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Most issues
Fewest issues
Complex pattern
Complex pattern
contaminatio/coinfection?
contaminatio/coinfection?
Convergent evolution
Convergent evolution
Lineages with convergent mutations
11
Convergent Trio 346/456/572
Convergent Trio 346/456/572
1
DeFLiRI
DeFLiRI
DeFLiRT
DeFLiRT
S:S31/F32-+S:R346T+S:F456L
16
DeFLuQE
DeFLuQE
S:S31-+S:F456L+S:Q493E
10
DeFViRT
DeFViRT
Deletions between S:180-190
Deletions between S:180-190
it is an umbrella that collects lineages with mutations in the S:180-190 area of the NTD
1
Deletions/Truncations/Frameshifted
Deletions/Truncations/Frameshifted
Lineage showing any deletions or stop codons or TRS changes.
DelRT
DelRT
S:S31-+S:R346T
Delta
Delta
1
Deltacron
Deltacron
designated
designated
Discussion
Discussion
2
Double Nuc mutations
Double Nuc mutations
2
duplicate
duplicate
DV.7.1 Spike
DV.7.1 Spike
EDITED
EDITED
EG.5.1
EG.5.1
Emerged in an undersampled area
Emerged in an undersampled area
Actual infection toll may be much larger than number of sequences suggest
22
Fake proposal to cope with recombinants here
Fake proposal to cope with recombinants here
FCS
FCS
FL.1.5.2 RBD
FL.1.5.2 RBD
FLip
FLip
= S:L455F / S:F456L
FLippeR
FLippeR
455-456-478
FLiRI
FLiRI
S:F456L+S:R346I
FLIRT combo
FLIRT combo
S:R346T+S:F456L+S:T572I
FLiRT
FLiRT
FLiRT is an Acronym for S:R346T + S:F456L
5
FLuQE
FLuQE
S:F456L+S:Q493E