robert_settlage_citations.bib

@article{Settlage1998,
  doi = {10.1002/(sici)1520-667x(1998)10:3<281::aid-mcs7>3.0.co;2-c},
  url = {https://doi.org/10.1002/(sici)1520-667x(1998)10:3<281::aid-mcs7>3.0.co;2-c},
  year = {1998},
  publisher = {Wiley},
  volume = {10},
  number = {3},
  pages = {281--285},
  author = {Robert E. Settlage and Paul S. Russo and Jeffrey Shabanowitz and Donald F. Hunt},
  title = {A novel $\mu$-{ESI} source for coupling capillary electrophoresis and mass spectrometry: Sequence determination of tumor peptides at the attomole level},
  journal = {Journal of Microcolumn Separations}
}

@article{Pieper1999,
  doi = {10.1084/jem.189.5.757},
  url = {https://doi.org/10.1084/jem.189.5.757},
  year = {1999},
  month = mar,
  publisher = {Rockefeller University Press},
  volume = {189},
  number = {5},
  pages = {757--766},
  author = {Rembert Pieper and Robert E. Christian and Monica I. Gonzales and Michael I. Nishimura and Gaorav Gupta and Robert E. Settlage and Jeffrey Shabanowitz and Steven A. Rosenberg and Donald F. Hunt and Suzanne L. Topalian},
  title = {Biochemical Identification of a Mutated Human Melanoma Antigen Recognized by {CD}4 T Cells},
  journal = {Journal of Experimental Medicine}
}

@article{Engelhard2007,
  doi = {10.1016/j.ijms.2006.08.009},
  url = {https://doi.org/10.1016/j.ijms.2006.08.009},
  year = {2007},
  month = jan,
  publisher = {Elsevier {BV}},
  volume = {259},
  number = {1-3},
  pages = {32--39},
  author = {Victor H. Engelhard},
  title = {The contributions of mass spectrometry to understanding of immune recognition by T lymphocytes},
  journal = {International Journal of Mass Spectrometry}
}

@article{Crotzer2000,
  doi = {10.4049/jimmunol.164.12.6120},
  url = {https://doi.org/10.4049/jimmunol.164.12.6120},
  year = {2000},
  month = jun,
  publisher = {The American Association of Immunologists},
  volume = {164},
  number = {12},
  pages = {6120--6129},
  author = {Victoria L. Crotzer and Robert E. Christian and Jill M. Brooks and Jeffrey Shabanowitz and Robert E. Settlage and Jarrod A. Marto and Forest M. White and Alan B. Rickinson and Donald F. Hunt and Victor H. Engelhard},
  title = {Immunodominance Among {EBV}-Derived Epitopes Restricted by {HLA}-B27 Does Not Correlate with Epitope Abundance in {EBV}-Transformed B-Lymphoblastoid Cell Lines},
  journal = {The Journal of Immunology}
}

@article{PesticDragovich2000,
  doi = {10.1126/science.290.5490.337},
  url = {https://doi.org/10.1126/science.290.5490.337},
  year = {2000},
  month = oct,
  publisher = {American Association for the Advancement of Science ({AAAS})},
  volume = {290},
  number = {5490},
  pages = {337--341},
  author = {Lidija Pestic-Dragovich and Ljuba Stojiljkovic and Anatoly A. Philimonenko and Grzegorz Nowak and Yunbo Ke and Robert E. Settlage and Jeffrey Shabanowitz and Donald F. Hunt and Pavel Hozak and Primal de Lanerolle},
  title = {A Myosin I Isoform in the Nucleus},
  journal = {Science}
}

@Article{pmid11680851,
   Author="Baginsky, S.  and Shteiman-Kotler, A.  and Liveanu, V.  and Yehudai-Resheff, S.  and Bellaoui, M.  and Settlage, R. E.  and Shabanowitz, J.  and Hunt, D. F.  and Schuster, G.  and Gruissem, W. ",
   Title="{{C}hloroplast {P}{N}{P}ase exists as a homo-multimer enzyme complex that is distinct from the {E}scherichia coli degradosome}",
   Journal="RNA",
   Year="2001",
   Volume="7",
   Number="10",
   Pages="1464--1475",
   Month="Oct"
}

@article{Dragon2002,
  doi = {10.1038/nature00769},
  url = {https://doi.org/10.1038/nature00769},
  year = {2002},
  month = jun,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {417},
  number = {6892},
  pages = {967--970},
  author = {Fran{\c{c}}ois Dragon and Jennifer E. G. Gallagher and Patricia A. Compagnone-Post and Brianna M. Mitchell and Kara A. Porwancher and Karen A. Wehner and Steven Wormsley and Robert E. Settlage and Jeffrey Shabanowitz and Yvonne Osheim and Ann L. Beyer and Donald F. Hunt and Susan J. Baserga},
  title = {A large nucleolar U3 ribonucleoprotein required for 18S ribosomal {RNA} biogenesis},
  journal = {Nature}
}

@article{Angenstein2002,
  doi = {10.1523/jneurosci.22-20-08827.2002},
  url = {https://doi.org/10.1523/jneurosci.22-20-08827.2002},
  year = {2002},
  month = oct,
  publisher = {Society for Neuroscience},
  volume = {22},
  number = {20},
  pages = {8827--8837},
  author = {Frank Angenstein and Anne M. Evans and Robert E. Settlage and Stewart T. Moran and Shuo-Chien Ling and Anna Y. Klintsova and Jeffrey Shabanowitz and Donald F. Hunt and William T. Greenough},
  title = {A Receptor for Activated C Kinase Is Part of Messenger Ribonucleoprotein Complexes Associated with {PolyA}-{mRNAs} in Neurons},
  journal = {The Journal of Neuroscience}
}

@article{Gioeli2002,
  doi = {10.1074/jbc.m204131200},
  url = {https://doi.org/10.1074/jbc.m204131200},
  year = {2002},
  month = aug,
  publisher = {Elsevier {BV}},
  volume = {277},
  number = {32},
  pages = {29304--29314},
  author = {Daniel Gioeli and Scott B. Ficarro and Jesse J. Kwiek and David Aaronson and Mathew Hancock and Andrew D. Catling and Forest M. White and Robert E. Christian and Robert E. Settlage and Jeffrey Shabanowitz and Donald F. Hunt and Michael J. Weber},
  title = {Androgen Receptor Phosphorylation},
  journal = {Journal of Biological Chemistry}
}

@article{Borer2002,
  doi = {10.1021/ed079p494},
  url = {https://doi.org/10.1021/ed079p494},
  year = {2002},
  month = apr,
  publisher = {American Chemical Society ({ACS})},
  volume = {79},
  number = {4},
  pages = {494},
  author = {L. L. Borer and J. G. Russell and R. E. Settlage and R. G. Bryant},
  title = {Experiments with Tris(ethylenediamine)cobalt({III}) Compounds: 59Co {NMR} and the Resolution of Enantiomeric [Co(en)3]3 Ion and Analysis by Formation of Diastereomeric Ion Pairs},
  journal = {Journal of Chemical Education}
}

@article{Thompson2004,
  doi = {10.1097/00002371-200405000-00001},
  url = {https://doi.org/10.1097/00002371-200405000-00001},
  year = {2004},
  publisher = {Ovid Technologies (Wolters Kluwer Health)},
  volume = {27},
  number = {3},
  pages = {177--183},
  author = {Lee W. Thompson and Kevin T. Hogan and Jennifer A. Caldwell and Richard A. Pierce and Ronald C. Hendrickson and Donna H. Deacon and Robert E. Settlage and Laurence H. Brinckerhoff and Victor H. Engelhard and Jeffrey Shabanowitz and Donald F. Hunt and Craig L. Slingluff},
  title = {Preventing the Spontaneous Modification of an {HLA}-A2-Restricted Peptide at an N-Terminal Glutamine or an Internal Cysteine Residue Enhances Peptide Antigenicity},
  journal = {Journal of Immunotherapy}
}

@article{Yang2005,
  doi = {10.1074/jbc.m505229200},
  url = {https://doi.org/10.1074/jbc.m505229200},
  year = {2005},
  month = oct,
  publisher = {Elsevier {BV}},
  volume = {280},
  number = {41},
  pages = {34447--34457},
  author = {Ching-Hui Yang and Jacek Szeliga and Jeremy Jordan and Shawn Faske and Zvjezdana Sever-Chroneos and Bre Dorsett and Robert E. Christian and Robert E. Settlage and Jeffrey Shabanowitz and Donald F. Hunt and Jeffrey A. Whitsett and Zissis C. Chroneos},
  title = {Identification of the Surfactant Protein A Receptor 210 as the Unconventional Myosin 18A},
  journal = {Journal of Biological Chemistry}
}

@article{Angenstein2005,
  doi = {10.1074/jbc.m412742200},
  url = {https://doi.org/10.1074/jbc.m412742200},
  year = {2005},
  month = feb,
  publisher = {Elsevier {BV}},
  volume = {280},
  number = {8},
  pages = {6496--6503},
  author = {Frank Angenstein and Anne M. Evans and Shuo-Chien Ling and Robert E. Settlage and Scott Ficarro and Franklin A. Carrero-Martinez and Jeffrey Shabanowitz and Donald F. Hunt and William T. Greenough},
  title = {Proteomic Characterization of Messenger Ribonucleoprotein Complexes Bound to Nontranslated or Translated Poly(A) {mRNAs} in the Rat Cerebral Cortex},
  journal = {Journal of Biological Chemistry}
}

@article{Yates2007,
  doi = {10.1016/j.ijms.2006.09.020},
  url = {https://doi.org/10.1016/j.ijms.2006.09.020},
  year = {2007},
  month = jan,
  publisher = {Elsevier {BV}},
  volume = {259},
  number = {1-3},
  pages = {174--183},
  author = {Nathan A. Yates and Ekaterina G. Deyanova and Wayne Geissler and Matthew C. Wiener and Jeffrey R. Sachs and Kenny K. Wong and Nancy A. Thornberry and Ranabir Sinha Roy and Robert E. Settlage and Ronald C. Hendrickson},
  title = {Identification of peptidase substrates in human plasma by {FTMS} based differential mass spectrometry},
  journal = {International Journal of Mass Spectrometry}
}

@article{Zhao2008,
  doi = {10.1021/pr800309z},
  url = {https://doi.org/10.1021/pr800309z},
  year = {2008},
  month = sep,
  publisher = {American Chemical Society ({ACS})},
  volume = {7},
  number = {10},
  pages = {4373--4383},
  author = {Xuemei Zhao and Ekaterina G. Deyanova and Laura S. Lubbers and Pete Zafian and Jenny J. Li and Andy Liaw and Qinghua Song and Yi Du and Robert E. Settlage and Gerry J. Hickey and Nathan A. Yates and Ronald C. Hendrickson},
  title = {Differential Mass Spectrometry of Rat Plasma Reveals Proteins That Are Responsive to 17$\beta$-Estradiol and a Selective Estrogen Receptor Modulator {PPT}},
  journal = {Journal of Proteome Research}
}

@article{Lee2008,
  doi = {10.1021/pr800510p},
  url = {https://doi.org/10.1021/pr800510p},
  year = {2008},
  month = oct,
  publisher = {American Chemical Society ({ACS})},
  volume = {7},
  number = {12},
  pages = {5177--5186},
  author = {Anita Y. H. Lee and Cloud P. Paweletz and Roy M. Pollock and Robert E. Settlage and Jonathan C. Cruz and J. Paul Secrist and Thomas A. Miller and Matthew G. Stanton and Astrid M. Kral and Nicole D. S. Ozerova and Fanyu Meng and Nathan A. Yates and Victoria Richon and Ronald C. Hendrickson},
  title = {Quantitative Analysis of Histone Deacetylase-1 Selective Histone Modifications by Differential Mass Spectrometry},
  journal = {Journal of Proteome Research}
}

@article{Paweletz2010,
  doi = {10.1021/pr900925d},
  url = {https://doi.org/10.1021/pr900925d},
  year = {2010},
  month = feb,
  publisher = {American Chemical Society ({ACS})},
  volume = {9},
  number = {3},
  pages = {1392--1401},
  author = {Cloud P. Paweletz and Matthew C. Wiener and Andrey Y. Bondarenko and Nathan A. Yates and Qinghua Song and Andy Liaw and Anita Y. H. Lee and Brandon T. Hunt and Ernst S. Henle and Fanyu Meng and Holly Funk Sleph and Marie Holahan and Sethu Sankaranarayanan and Adam J. Simon and Robert E. Settlage and Jeffrey R. Sachs and Mark Shearman and Alan B. Sachs and Jacquelynn J. Cook and Ronald C. Hendrickson},
  title = {Application of an End-to-End Biomarker Discovery Platform to Identify Target Engagement Markers in Cerebrospinal Fluid by High Resolution Differential Mass Spectrometry},
  journal = {Journal of Proteome Research}
}

@article{Friedman2011,
  doi = {10.1002/pmic.201000736},
  url = {https://doi.org/10.1002/pmic.201000736},
  year = {2011},
  month = mar,
  publisher = {Wiley},
  volume = {11},
  number = {8},
  pages = {1371--1381},
  author = {David B. Friedman and Tracy M. Andacht and Maureen K. Bunger and Allis S. Chien and David H. Hawke and Jeroen Krijgsveld and William S. Lane and Kathryn S. Lilley and Michael J. MacCoss and Robert L. Moritz and Robert E. Settlage and Nicholas E. Sherman and Susan T. Weintraub and H. Ewa Witkowska and Nathan A. Yates and Christoph W. Turck},
  title = {The {ABRF} Proteomics Research Group Studies: Educational exercises for qualitative and quantitative proteomic analyses},
  journal = {{PROTEOMICS}}
}

@article{Tae2011,
  doi = {10.1128/jb.06181-11},
  url = {https://doi.org/10.1128/jb.06181-11},
  year = {2011},
  month = nov,
  publisher = {American Society for Microbiology},
  volume = {193},
  number = {22},
  pages = {6410--6410},
  author = {Hongseok Tae and Shamira Shallom and Robert Settlage and Dale Preston and L. Garry Adams and Harold R. Garner},
  title = {Revised Genome Sequence of Brucella suis 1330},
  journal = {Journal of Bacteriology}
}

@article{Tae2012,
  doi = {10.1128/jb.06556-11},
  url = {https://doi.org/10.1128/jb.06556-11},
  year = {2012},
  month = feb,
  publisher = {American Society for Microbiology},
  volume = {194},
  number = {4},
  pages = {910--910},
  author = {Hongseok Tae and Shamira Shallom and Robert Settlage and Gregory N. Hawkins and L. Garry Adams and Harold R. Garner},
  title = {Complete Genome Sequence of Brucella suis {VBI}22,  Isolated from Bovine Milk},
  journal = {Journal of Bacteriology}
}

@article{Tae2012,
  doi = {10.1016/j.ygeno.2012.07.015},
  url = {https://doi.org/10.1016/j.ygeno.2012.07.015},
  year = {2012},
  month = nov,
  publisher = {Elsevier {BV}},
  volume = {100},
  number = {5},
  pages = {271--276},
  author = {Hongseok Tae and Robert E. Settlage and Shamira Shallom and Jasmin H. Bavarva and Dale Preston and Gregory N. Hawkins and L. Garry Adams and Harold R. Garner},
  title = {Improved variation calling via an iterative backbone remapping and local assembly method for bacterial genomes},
  journal = {Genomics}
}

@article{Radakovits2012,
  doi = {10.1038/ncomms1688},
  url = {https://doi.org/10.1038/ncomms1688},
  year = {2012},
  month = jan,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {3},
  number = {1},
  author = {Randor Radakovits and Robert E. Jinkerson and Susan I. Fuerstenberg and Hongseok Tae and Robert E. Settlage and Jeffrey L. Boore and Matthew C. Posewitz},
  title = {Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropsis gaditana},
  journal = {Nature Communications}
}

@article{Bavarva2013,
  doi = {10.1371/journal.pone.0067252},
  url = {https://doi.org/10.1371/journal.pone.0067252},
  year = {2013},
  month = jun,
  publisher = {Public Library of Science ({PLoS})},
  volume = {8},
  number = {6},
  pages = {e67252},
  author = {Jasmin H. Bavarva and Hongseok Tae and Robert E. Settlage and Harold R. Garner},
  editor = {Emmanuel Dias-Neto},
  title = {Characterizing the Genetic Basis for Nicotine Induced Cancer Development: A Transcriptome Sequencing Study},
  journal = {{PLoS} {ONE}}
}

@article{Tae2013,
  doi = {10.1093/bioinformatics/btt277},
  url = {https://doi.org/10.1093/bioinformatics/btt277},
  year = {2013},
  month = may,
  publisher = {Oxford University Press ({OUP})},
  volume = {29},
  number = {14},
  pages = {1734--1741},
  author = {Hongseok Tae and Kevin W. McMahon and Robert E. Settlage and Jasmin H. Bavarva and Harold R. Garner},
  title = {{ReviSTER}: an automated pipeline to revise misaligned reads to simple tandem repeats},
  journal = {Bioinformatics}
}

@article{Zhang2014,
  doi = {10.1186/s13099-014-0039-8},
  url = {https://doi.org/10.1186/s13099-014-0039-8},
  year = {2014},
  month = sep,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {6},
  number = {1},
  author = {Husen Zhang and Haifeng Wang and Megan Shepherd and Ke Wen and Guohua Li and Xingdong Yang and Jacob Kocher and Ernawati Giri-Rachman and Allan Dickerman and Robert Settlage and Lijuan Yuan},
  title = {Probiotics and virulent human rotavirus modulate the transplanted human gut microbiota in gnotobiotic pigs},
  journal = {Gut Pathogens}
}

@article{Jiang2014,
  doi = {10.1186/s13059-014-0459-2},
  url = {https://doi.org/10.1186/s13059-014-0459-2},
  year = {2014},
  month = sep,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {15},
  number = {9},
  author = {Xiaofang Jiang and Ashley Peery and A Brantley Hall and Atashi Sharma and Xiao-Guang Chen and Robert M Waterhouse and Aleksey Komissarov and Michelle M Riehle and Yogesh Shouche and Maria V Sharakhova and Dan Lawson and Nazzy Pakpour and Peter Arensburger and Victoria L M Davidson and Karin Eiglmeier and Scott Emrich and Phillip George and Ryan C Kennedy and Shrinivasrao P Mane and Gareth Maslen and Chioma Oringanje and Yumin Qi and Robert Settlage and Marta Tojo and Jose M C Tubio and Maria F Unger and Bo Wang and Kenneth D Vernick and Jose M C Ribeiro and Anthony A James and Kristin Michel and Michael A Riehle and Shirley Luckhart and Igor V Sharakhov and Zhijian Tu},
  title = {Genome analysis of a major urban malaria vector mosquito,  Anopheles stephensi},
  journal = {Genome Biology}
}

@article{Zhang2014,
  doi = {10.1038/ismej.2014.165},
  url = {https://doi.org/10.1038/ismej.2014.165},
  year = {2014},
  month = sep,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {9},
  number = {3},
  pages = {770--781},
  author = {Husen Zhang and Joshua B Sparks and Saikumar V Karyala and Robert Settlage and Xin M Luo},
  title = {Host adaptive immunity alters gut microbiota},
  journal = {The {ISME} Journal}
}

@article{Monson2014,
  doi = {10.1371/journal.pone.0100930},
  url = {https://doi.org/10.1371/journal.pone.0100930},
  year = {2014},
  month = jun,
  publisher = {Public Library of Science ({PLoS})},
  volume = {9},
  number = {6},
  pages = {e100930},
  author = {Melissa S. Monson and Robert E. Settlage and Kevin W. McMahon and Kristelle M. Mendoza and Sumit Rawal and Hani S. El-Nezami and Roger A. Coulombe and Kent M. Reed},
  editor = {Huaijun Zhou},
  title = {Response of the Hepatic Transcriptome to Aflatoxin B1 in Domestic Turkey (Meleagris gallopavo)},
  journal = {{PLoS} {ONE}}
}

@article{Dalloul2014,
  doi = {10.3382/ps.2013-03560},
  url = {https://doi.org/10.3382/ps.2013-03560},
  year = {2014},
  month = feb,
  publisher = {Elsevier {BV}},
  volume = {93},
  number = {2},
  pages = {479--484},
  author = {Rami A. Dalloul and Aleksey V. Zimin and Robert E. Settlage and Sungwon Kim and Kent M. Reed},
  title = {Next-generation sequencing strategies for characterizing the turkey genome},
  journal = {Poultry Science}
}

@article{Tae2013,
  doi = {10.1093/bioinformatics/btt595},
  url = {https://doi.org/10.1093/bioinformatics/btt595},
  year = {2013},
  month = oct,
  publisher = {Oxford University Press ({OUP})},
  volume = {30},
  number = {5},
  pages = {652--659},
  author = {Hongseok Tae and Dong-Yun Kim and John McCormick and Robert E. Settlage and Harold R. Garner},
  title = {Discretized Gaussian mixture for genotyping of microsatellite loci containing homopolymer runs},
  journal = {Bioinformatics}
}

@article{Monson2015,
  doi = {10.1007/s00251-014-0825-y},
  url = {https://doi.org/10.1007/s00251-014-0825-y},
  year = {2015},
  month = jan,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {67},
  number = {3},
  pages = {163--178},
  author = {Melissa S. Monson and Robert E. Settlage and Kristelle M. Mendoza and Sumit Rawal and Hani S. El-Nezami and Roger A. Coulombe and Kent M. Reed},
  title = {Modulation of the spleen transcriptome in domestic turkey (Meleagris gallopavo) in response to aflatoxin B1 and probiotics},
  journal = {Immunogenetics}
}

@article{Zhang2015,
  doi = {10.1007/s10048-014-0435-8},
  url = {https://doi.org/10.1007/s10048-014-0435-8},
  year = {2015},
  month = jan,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {16},
  number = {2},
  pages = {133--144},
  author = {Wei Zhang and Sungwon Kim and Robert Settlage and Wyatt McMahon and Lindsay H. Sumners and Paul B. Siegel and Benjamin J. Dorshorst and Mark A. Cline and Elizabeth R. Gilbert},
  title = {Hypothalamic differences in expression of genes involved in monoamine synthesis and signaling pathways after insulin injection in chickens from lines selected for high and low body weight},
  journal = {neurogenetics}
}

@article{Zalenskaya2015,
  doi = {10.1371/journal.pone.0128557},
  url = {https://doi.org/10.1371/journal.pone.0128557},
  year = {2015},
  month = jun,
  publisher = {Public Library of Science ({PLoS})},
  volume = {10},
  number = {6},
  pages = {e0128557},
  author = {Irina A. Zalenskaya and Theresa Joseph and Jasmin Bavarva and Nazita Yousefieh and Suzanne S. Jackson and Titilayo Fashemi and Hidemi S. Yamamoto and Robert Settlage and Raina N. Fichorova and Gustavo F. Doncel},
  editor = {J. Gerardo Garcia-Lerma},
  title = {Gene Expression Profiling of Human Vaginal Cells In Vitro Discriminates Compounds with Pro-Inflammatory and Mucosa-Altering Properties: Novel Biomarkers for Preclinical Testing of {HIV} Microbicide Candidates},
  journal = {{PLOS} {ONE}}
}

@article{Ding2015,
  doi = {10.2337/db14-1314},
  url = {https://doi.org/10.2337/db14-1314},
  year = {2015},
  month = jul,
  publisher = {American Diabetes Association},
  volume = {64},
  number = {10},
  pages = {3464--3474},
  author = {Jingzhong Ding and Lindsay M. Reynolds and Tanja Zeller and Christian M\"{u}ller and Kurt Lohman and Barbara J. Nicklas and Stephen B. Kritchevsky and Zhiqing Huang and Alberto de la Fuente and Nicola Soranzo and Robert E. Settlage and Chia-Chi Chuang and Timothy Howard and Ning Xu and Mark O. Goodarzi and Y.-D. Ida Chen and Jerome I. Rotter and David S. Siscovick and John S. Parks and Susan Murphy and David R. Jacobs and Wendy Post and Russell P. Tracy and Philipp S. Wild and Stefan Blankenberg and Ina Hoeschele and David Herrington and Charles E. McCall and Yongmei Liu},
  title = {Alterations of a Cellular Cholesterol Metabolism Network Are a Molecular Feature of Obesity-Related Type 2 Diabetes and Cardiovascular Disease},
  journal = {Diabetes}
}

@article{Liao2015,
  doi = {10.4049/jimmunol.1501157},
  url = {https://doi.org/10.4049/jimmunol.1501157},
  year = {2015},
  month = oct,
  publisher = {The American Association of Immunologists},
  volume = {195},
  number = {10},
  pages = {4578--4582},
  author = {Xiaofeng Liao and Song Li and Robert E. Settlage and Sha Sun and Jingjing Ren and Alec M. Reihl and Husen Zhang and Saikumar V. Karyala and Christopher M. Reilly and S. Ansar Ahmed and Xin M. Luo},
  title = {Cutting Edge: Plasmacytoid Dendritic Cells in Late-Stage Lupus Mice Defective in Producing {IFN}-$\alpha$},
  journal = {The Journal of Immunology}
}

@article{Hendrickson2015,
  doi = {10.1371/journal.pone.0135365},
  url = {https://doi.org/10.1371/journal.pone.0135365},
  year = {2015},
  month = aug,
  publisher = {Public Library of Science ({PLoS})},
  volume = {10},
  number = {8},
  pages = {e0135365},
  author = {Ronald C. Hendrickson and Anita Y. H. Lee and Qinghua Song and Andy Liaw and Matt Wiener and Cloud P. Paweletz and Jeffrey L. Seeburger and Jenny Li and Fanyu Meng and Ekaterina G. Deyanova and Matthew T. Mazur and Robert E. Settlage and Xuemei Zhao and Katie Southwick and Yi Du and Dan Holder and Jeffrey R. Sachs and Omar F. Laterza and Aimee Dallob and Derek L. Chappell and Karen Snyder and Vijay Modur and Elizabeth King and Catharine Joachim and Andrey Y. Bondarenko and Mark Shearman and Keith A. Soper and A. David Smith and William Z. Potter and Ken S. Koblan and Alan B. Sachs and Nathan A. Yates},
  editor = {Stephen D Ginsberg},
  title = {High Resolution Discovery Proteomics Reveals Candidate Disease Progression Markers of Alzheimer's Disease in Human Cerebrospinal Fluid},
  journal = {{PLOS} {ONE}}
}

@article{Davis2015,
  doi = {10.1016/j.cbpa.2015.09.001},
  url = {https://doi.org/10.1016/j.cbpa.2015.09.001},
  year = {2015},
  month = dec,
  publisher = {Elsevier {BV}},
  volume = {190},
  pages = {68--74},
  author = {Mary Davis and Renee Jessee and Matthew Close and Xiangping Fu and Robert Settlage and Guoqing Wang and Mark A. Cline and Elizabeth R. Gilbert},
  title = {Fasting for 21 days leads to changes in adipose tissue and liver physiology in juvenile checkered garter snakes ( Thamnophis marcianus )},
  journal = {Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology}
}

@article{Wang2015,
  doi = {10.1186/s12864-015-2076-1},
  url = {https://doi.org/10.1186/s12864-015-2076-1},
  year = {2015},
  month = oct,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {16},
  number = {1},
  author = {Zheng Wang and Dagmar H. Leary and Jinny Liu and Robert E. Settlage and Kenan P. Fears and Stella H. North and Anahita Mostaghim and Tara Essock-Burns and Sarah E. Haynes and Kathryn J. Wahl and Christopher M. Spillmann},
  title = {Molt-dependent transcriptomic analysis of cement proteins in the barnacle Amphibalanus amphitrite},
  journal = {{BMC} Genomics}
}

@article{Reed2016,
  doi = {10.1007/s00251-015-0893-7},
  url = {https://doi.org/10.1007/s00251-015-0893-7},
  year = {2016},
  month = jan,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {68},
  number = {3},
  pages = {219--229},
  author = {Kent M Reed and Kristelle M Mendoza and Robert E Settlage},
  title = {Targeted capture enrichment and sequencing identifies extensive nucleotide variation in the turkey {MHC}-B},
  journal = {Immunogenetics}
}

@article{Kang2016,
  doi = {10.1093/gbe/evw095},
  url = {https://doi.org/10.1093/gbe/evw095},
  year = {2016},
  month = apr,
  publisher = {Oxford University Press ({OUP})},
  volume = {8},
  number = {5},
  pages = {1482--1488},
  author = {Lin Kang and Robert Settlage and Wyatt McMahon and Katarzyna Michalak and Hongseok Tae and Harold R. Garner and Elizabeth A. Stacy and Donald K. Price and Pawel Michalak},
  title = {Genomic Signatures of Speciation in Sympatric and Allopatric Hawaiian Picture-Winged Drosophila},
  journal = {Genome Biology and Evolution}
}

@article{Mattison2017,
  doi = {10.1021/acs.jafc.6b04199},
  url = {https://doi.org/10.1021/acs.jafc.6b04199},
  year = {2017},
  month = feb,
  publisher = {American Chemical Society ({ACS})},
  volume = {65},
  number = {7},
  pages = {1443--1455},
  author = {Christopher P. Mattison and Ruhi Rai and Robert E. Settlage and Doug J. Hinchliffe and Crista Madison and John M. Bland and Suzanne Brashear and Charles J. Graham and Matthew R. Tarver and Christopher Florane and Peter J. Bechtel},
  title = {{RNA}-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes},
  journal = {Journal of Agricultural and Food Chemistry}
}

@article{Bishop2017,
  doi = {10.1021/acs.jproteome.6b00857},
  url = {https://doi.org/10.1021/acs.jproteome.6b00857},
  year = {2017},
  month = feb,
  publisher = {American Chemical Society ({ACS})},
  volume = {16},
  number = {4},
  pages = {1470--1482},
  author = {Barney M. Bishop and Melanie L. Juba and Paul S. Russo and Megan Devine and Stephanie M. Barksdale and Shaylyn Scott and Robert Settlage and Pawel Michalak and Kajal Gupta and Kent Vliet and Joel M. Schnur and Monique L. van Hoek},
  title = {Discovery of Novel Antimicrobial Peptides from Varanus komodoensis (Komodo Dragon) by Large-Scale Analyses and De-Novo-Assisted Sequencing Using Electron-Transfer Dissociation Mass Spectrometry},
  journal = {Journal of Proteome Research}
}

@article{Nichols2018,
  doi = {10.1186/s12860-018-0166-z},
  url = {https://doi.org/10.1186/s12860-018-0166-z},
  year = {2018},
  month = aug,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {19},
  number = {1},
  author = {Anne E. C. Nichols and Robert E. Settlage and Stephen R. Werre and Linda A. Dahlgren},
  title = {Novel roles for scleraxis in regulating adult tenocyte function},
  journal = {{BMC} Cell Biology}
}

@article{Todd2018,
  doi = {10.1128/msphere.00269-18},
  url = {https://doi.org/10.1128/msphere.00269-18},
  year = {2018},
  month = aug,
  publisher = {American Society for Microbiology},
  volume = {3},
  number = {4},
  author = {S. Michelle Todd and Robert E. Settlage and Kevin K. Lahmers and Daniel J. Slade},
  editor = {Sarah E. F. D{\textquotesingle}Orazio},
  title = {Fusobacterium Genomics Using {MinION} and Illumina Sequencing Enables Genome Completion and Correction},
  journal = {{mSphere}}
}

@article{Leng2019,
  doi = {10.1096/fj.201800574rr},
  url = {https://doi.org/10.1096/fj.201800574rr},
  year = {2019},
  month = mar,
  publisher = {Wiley},
  volume = {33},
  number = {6},
  pages = {7403--7416},
  author = {Xinyan Leng and Xu Ji and Yuguo Hou and Robert Settlage and Honglin Jiang},
  title = {Roles of the proteasome and inhibitor of {DNA} binding 1 protein in myoblast differentiation},
  journal = {The {FASEB} Journal}
}

@article{Ates2020,
  doi = {10.1242/dmm.041913},
  url = {https://doi.org/10.1242/dmm.041913},
  year = {2020},
  month = jan,
  publisher = {The Company of Biologists},
  author = {Kristin M. Ates and Tong Wang and Trevor Moreland and Rajalakshmi Veeranan-Karmegam and Manxiu Ma and Chelsi Jeter and Priya Anand and Wolfgang Wenzel and Hyung-Goo Kim and Lynne A. Wolfe and Joshi A. Stephen and David R. Adams and Thomas Markello and Cynthia J. Tifft and Robert Settlage and William A. Gahl and Graydon B. Gonsalvez and May Christine Malicdan and Heather Flanagan-Steet and Y. Albert Pan},
  title = {Deficiency in the endocytic adaptor proteins {PHETA}1/2 impair renal and craniofacial development},
  journal = {Disease Models and Mechanisms}
}

@article{Castro2020,
  doi = {10.1101/2020.03.13.991323},
  url = {https://doi.org/10.1101/2020.03.13.991323},
  year = {2020},
  month = mar,
  publisher = {Cold Spring Harbor Laboratory},
  author = {Ryan Castro and Thomas Taetzsch and Sydney K. Vaughan and Kerilyn Godbe and John Chappell and Robert Settlage and Gregorio Valdez},
  title = {Identification of a molecular fingerprint for synaptic glia}
}

@article{vanHoek2019,
  doi = {10.1186/s12864-019-6029-y},
  url = {https://doi.org/10.1186/s12864-019-6029-y},
  year = {2019},
  month = aug,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {20},
  number = {1},
  author = {Monique L. van Hoek and M. Dennis Prickett and Robert E. Settlage and Lin Kang and Pawel Michalak and Kent A. Vliet and Barney M. Bishop},
  title = {The Komodo dragon (Varanus komodoensis) genome and identification of innate immunity genes and clusters},
  journal = {{BMC} Genomics}
}

@incollection{Settlage2019,
  doi = {10.1007/978-3-030-34356-9_38},
  url = {https://doi.org/10.1007/978-3-030-34356-9_38},
  year = {2019},
  publisher = {Springer International Publishing},
  pages = {504--513},
  author = {Robert Settlage and Alan Chalker and Eric Franz and Doug Johnson and Steve Gallo and Edgar Moore and David Hudak},
  title = {Open {OnDemand}: {HPC} for Everyone},
  booktitle = {Lecture Notes in Computer Science}
}

@incollection{Settlage2020,
  doi = {10.1007/978-3-030-44728-1_11},
  url = {https://doi.org/10.1007/978-3-030-44728-1_11},
  year = {2020},
  publisher = {Springer International Publishing},
  pages = {179--189},
  author = {Robert Settlage and Srijith Rajamohan and Kevin Lahmers and Alan Chalker and Eric Franz and Steve Gallo and David Hudak},
  title = {Portals for Interactive Steering of {HPC} Workflows},
  booktitle = {Communications in Computer and Information Science}
}

@article{Patel2020,
  doi = {10.1016/j.expneurol.2020.113319},
  url = {https://doi.org/10.1016/j.expneurol.2020.113319},
  year = {2020},
  month = jul,
  publisher = {Elsevier {BV}},
  volume = {329},
  pages = {113319},
  author = {P.A. Patel and C. Liang and A. Arora and S. Vijayan and S. Ahuja and P.K. Wagley and R. Settlage and L.E.W. LaConte and H.P. Goodkin and I. Lazar and S. Srivastava and K. Mukherjee},
  title = {Haploinsufficiency of X-linked intellectual disability gene {CASK} induces post-transcriptional changes in synaptic and cellular metabolic pathways},
  journal = {Experimental Neurology}
}

@article{Castro2020,
  doi = {10.7554/elife.56935},
  url = {https://doi.org/10.7554/elife.56935},
  year = {2020},
  month = jun,
  publisher = {{eLife} Sciences Publications,  Ltd},
  volume = {9},
  author = {Ryan Castro and Thomas Taetzsch and Sydney K Vaughan and Kerilyn Godbe and John Chappell and Robert E Settlage and Gregorio Valdez},
  title = {Specific labeling of synaptic schwann cells reveals unique cellular and molecular features},
  journal = {{eLife}}
}

@inproceedings{Rajamohan2020,
  doi = {10.1145/3311790.3396627},
  url = {https://doi.org/10.1145/3311790.3396627},
  year = {2020},
  month = jul,
  publisher = {{ACM}},
  author = {Srijith Rajamohan and Robert E. Settlage},
  title = {Informing the On/Off-prem Cloud Discussion in Higher Education},
  booktitle = {Practice and Experience in Advanced Research Computing}
}

@article{Sheehan2020,
  doi = {10.1128/jb.00240-20},
  url = {https://doi.org/10.1128/jb.00240-20},
  year = {2020},
  month = sep,
  publisher = {American Society for Microbiology},
  volume = {202},
  number = {20},
  author = {Lauren M. Sheehan and James A. Budnick and Jaquille Fyffe-Blair and Kellie A. King and Robert E. Settlage and Clayton C. Caswell},
  editor = {Laurie E. Comstock},
  title = {The Endoribonuclease {RNase} E Coordinates Expression of {mRNAs} and Small Regulatory {RNAs} and Is Critical for the Virulence of Brucella abortus},
  journal = {Journal of Bacteriology}
}

@article{Taetzsch2020,
  doi = {10.1113/jp280405},
  url = {https://doi.org/10.1113/jp280405},
  year = {2020},
  month = oct,
  publisher = {Wiley},
  volume = {599},
  number = {1},
  pages = {171--192},
  author = {Thomas Taetzsch and Dillon Shapiro and Randa Eldosougi and Tracey Myers and Robert E. Settlage and Gregorio Valdez},
  title = {The {microRNA} {miR}-133b functions to slow Duchenne muscular dystrophy pathogenesis},
  journal = {The Journal of Physiology}
}

@article{Compton2020,
  doi = {10.1534/g3.120.401654},
  url = {https://doi.org/10.1534/g3.120.401654},
  year = {2020},
  month = oct,
  publisher = {Oxford University Press ({OUP})},
  volume = {10},
  number = {10},
  pages = {3811--3819},
  author = {Austin Compton and Jiangtao Liang and Chujia Chen and Varvara Lukyanchikova and Yumin Qi and Mark Potters and Robert Settlage and Dustin Miller and St{\'{e}}phane Deschamps and Chunhong Mao and Victor Llaca and Igor V Sharakhov and Zhijian Tu},
  title = {The Beginning of the End: A Chromosomal Assembly of the New World Malaria Mosquito Ends with a Novel Telomere},
  journal = {G3 Genes$\vert$Genomes$\vert$Genetics}
}

@book{2022,
  doi = {10.1007/978-981-16-1781-2},
  url = {https://doi.org/10.1007/978-981-16-1781-2},
  year = {2022},
  publisher = {Springer Singapore},
  editor = {Xin-She Yang and Simon Sherratt and Nilanjan Dey and Amit Joshi},
  title = {Proceedings of Sixth International Congress on Information and Communication Technology}
}

@article{Reed2021,
  doi = {10.1007/s00251-021-01217-6},
  url = {https://doi.org/10.1007/s00251-021-01217-6},
  year = {2021},
  month = may,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {73},
  number = {5},
  pages = {405--417},
  author = {Kent M. Reed and Robert E. Settlage},
  title = {Major histocompatibility complex genes and locus organization in the Komodo dragon (Varanus komodoensis)},
  journal = {Immunogenetics}
}

@article{Ji2021,
  doi = {10.1093/jas/skab273},
  url = {https://doi.org/10.1093/jas/skab273},
  year = {2021},
  month = sep,
  publisher = {Oxford University Press ({OUP})},
  volume = {99},
  number = {10},
  author = {Xu Ji and Huili Tong and Robert Settlage and Wen Yao and Honglin Jiang},
  title = {Establishment of a bovine rumen epithelial cell line},
  journal = {Journal of Animal Science}
}

@article{Gleason2021,
  doi = {10.3389/fanim.2021.745848},
  url = {https://doi.org/10.3389/fanim.2021.745848},
  year = {2021},
  month = oct,
  publisher = {Frontiers Media {SA}},
  volume = {2},
  author = {Claire B. Gleason and Robert E. Settlage and Linda M. Beckett and Robin R. White},
  title = {Characterizing Effects of Ingredients Differing in Ruminally Degradable Protein and Fiber Supplies on the Ovine Rumen Microbiome Using Next-Generation Sequencing},
  journal = {Frontiers in Animal Science}
}

@article{CastanedaGuzman2021,
  doi = {10.1038/s41597-021-01081-9},
  url = {https://doi.org/10.1038/s41597-021-01081-9},
  year = {2021},
  month = nov,
  publisher = {Springer Science and Business Media {LLC}},
  volume = {8},
  number = {1},
  author = {Mariana Castaneda-Guzman and Gabriel Mantilla-Saltos and Kris A. Murray and Robert Settlage and Luis E. Escobar},
  title = {A database of global coastal conditions},
  journal = {Scientific Data}
}

@article{Lyu2021,
  doi = {10.1093/jas/skab235.186},
  url = {https://doi.org/10.1093/jas/skab235.186},
  year = {2021},
  month = oct,
  publisher = {Oxford University Press ({OUP})},
  volume = {99},
  number = {Supplement{\_}3},
  pages = {103--103},
  author = {Pengcheng Lyu and Robert Settlage and Honglin Jiang},
  title = {192 Identification of Fos and {FosB} as Transcriptional Regulators of Bovine Satellite Cell Differentiation},
  journal = {Journal of Animal Science}
}