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Ensembl Upgrade to Rat Assembly mRatBN7.2 Breaks Export #12

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ACastanza opened this issue Dec 10, 2021 · 5 comments
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Ensembl Upgrade to Rat Assembly mRatBN7.2 Breaks Export #12

ACastanza opened this issue Dec 10, 2021 · 5 comments

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@ACastanza
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Ensembl 105 updated the rat genome assembly from Rnor_6.0 to mRatBN7.2. This causes the export to fail:
https://github.com/ACastanza/ensembl-genes/runs/4481560669?check_suite_focus=true

@ACastanza
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ACastanza commented Dec 10, 2021

@dhimmel
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dhimmel commented Dec 10, 2021

Thanks! So the new database is rattus_norvegicus_core_105_72.

@dhimmel
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dhimmel commented Dec 10, 2021

Also noting the ensembl 105 release notes which include:

Rat (Rattus norvegicus) has been updated from Rnor 6.0 to mRatBN7.1

But perhaps mRatBN7.1 is a typo and should be mRatBN7.2?

dhimmel pushed a commit that referenced this issue Dec 10, 2021
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dhimmel commented Dec 10, 2021

@ACastanza
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RGD is also saying 7.2 (https://rgd.mcw.edu/wg/news/new-rat-genome/) so I assume it's just a typo in their release notes

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