main.yml

name: Build and tests

on:
  push:
    branches: [ main, master, develop ]
    paths-ignore:
      - '**.md'
  workflow_dispatch:
 
jobs:

########################################################################################
  make:
    name: Make
    strategy:
      fail-fast: false
      matrix:
        machine: [ubuntu-latest]
        gmake_install_command: ['gmake --version']
        compiler: [12]
        include:
        - {machine: macOS-13, gmake_install_command: 'brew install make && gmake --version', compiler: 12}
        
    runs-on: ['${{ matrix.machine }}']   

    steps:
    - uses: actions/checkout@v4
      with:
        submodules: recursive

    - name: install gmake
      run: ${{ matrix.gmake_install_command }}    
    
    - name: get tags
      run: | 
        cd ./libs/igraph
        git fetch --prune --unshallow
        echo exit code $?
        git tag --list
      continue-on-error: true  
    
    - name: make
      run: | 
        gmake -j32 CXX=g++-${{matrix.compiler}} CC=gcc-${{matrix.compiler}} STATIC_LINK=true
        cp ./bin/clusty ./clusty-${{matrix.compiler}}
        gmake clean
    - name: tar artifacts
      run: tar -cvf clusty.tar ./clusty-${{matrix.compiler}} ./test/cmp.py ./test/vir61.*
    
    - uses: actions/upload-artifact@v4
      with:
        name: executable-artifact-${{ matrix.machine }}
        path: ./clusty.tar    

########################################################################################
  vir61-linkage:
    name: Vir61
    needs: make
    strategy:
      fail-fast: false
      matrix:
        machine: [ubuntu-latest, macOS-13]
        compiler: [12]
        algo: [single, complete]
        threshold: [95, 70]
     
    runs-on: ['${{ matrix.machine }}']    
    
    steps:
    - uses: actions/download-artifact@v4
      with:
        name: executable-artifact-${{ matrix.machine }}
        path: ./
        
    - name: untar artifacts
      run: tar -xf clusty.tar
    
    - name: help
      run: ./clusty-${{matrix.compiler}}
    
    - name: version
      run: ./clusty-${{matrix.compiler}} --version
    
    - name: ${{matrix.algo}}, ${{matrix.threshold}} (with representatives, reordered columns)
      run: |
        ./clusty-${{matrix.compiler}} --algo ${{matrix.algo}} --objects-file ./test/vir61.list --similarity --min ani 0.${{matrix.threshold}} --id-cols id2 id1 --distance-col ani ./test/vir61.ani vir61.${{matrix.algo}}.${{matrix.threshold}} --out-representatives
        python ./test/cmp.py vir61.${{matrix.algo}}.${{matrix.threshold}} ./test/vir61.${{matrix.algo}}.${{matrix.threshold}}.python.csv