1.0-18 compile error

[yuanjiayj]

error info. list below:

sf :
Version 1.0-14 installed in /home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4
Version 1.0-18 available at https://mirrors.tuna.tsinghua.edu.cn/CRAN
Update? (Yes/no/cancel)
试开URL’https://mirrors.tuna.tsinghua.edu.cn/CRAN/src/contrib/sf_1.0-18.tar.gz'
Content type 'application/octet-stream' length 3804756 bytes (3.6 MB)

downloaded 3.6 MB

• installing source package ‘sf’ ...
  ** 成功将‘sf’程序包解包并MD5和检查
  ** using staged installation
  configure: CC: gcc
  configure: CXX: g++ -std=gnu++17
  checking for gdal-config... /usr/bin/gdal-config
  checking gdal-config usability... yes
  configure: GDAL: 2.4.0
  checking GDAL version >= 2.0.1... yes
  checking for gcc... gcc
  checking whether the C compiler works... yes
  checking for C compiler default output file name... a.out
  checking for suffix of executables...
  checking whether we are cross compiling... no
  checking for suffix of object files... o
  checking whether the compiler supports GNU C... yes
  checking whether gcc accepts -g... yes
  checking for gcc option to enable C11 features... none needed
  checking for stdio.h... yes
  checking for stdlib.h... yes
  checking for string.h... yes
  checking for inttypes.h... yes
  checking for stdint.h... yes
  checking for strings.h... yes
  checking for sys/stat.h... yes
  checking for sys/types.h... yes
  checking for unistd.h... yes
  checking for gdal.h... yes
  checking GDAL: linking with --libs only... yes
  checking GDAL: /usr/share/gdal/pcs.csv readable... yes
  checking GDAL: checking whether PROJ is available for linking:... yes
  checking GDAL: checking whether PROJ is available for running:... yes
  configure: GDAL: 2.4.0
  configure: pkg-config proj exists, will use it
  checking for proj_api.h... yes
  configure: PROJ: 5.2.0
  checking for pj_init_plus in -lproj... yes
  checking PROJ: epsg found and readable... yes
  checking for geos-config... /usr/bin/geos-config
  checking geos-config usability... yes
  configure: GEOS: 3.7.1
  checking GEOS version >= 3.4.0... yes
  checking for geos_c.h... yes
  checking geos: linking with -L/usr/lib/mips64el-linux-gnuabi64 -lgeos_c... yes
  configure: Package CPP flags: -I/usr/include/gdal -I/usr/include
  configure: Package LIBS: -lproj -L/usr/lib -lgdal -L/usr/lib/mips64el-linux-gnuabi64 -lgeos_c
  configure: creating ./config.status
  config.status: creating src/Makevars
  ** libs
  using C++ compiler: ‘g++ (Uos 8.3.0.13-deepin1) 8.3.0’
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c bbox.cpp -o bbox.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gdal.cpp -o gdal.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gdal_geom.cpp -o gdal_geom.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gdal_read.cpp -o gdal_read.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gdal_read_stream.cpp -o gdal_read_stream.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gdal_utils.cpp -o gdal_utils.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gdal_write.cpp -o gdal_write.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c geos.cpp -o geos.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c hex.cpp -o hex.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c mdim.cpp -o mdim.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c ops.cpp -o ops.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c polygonize.cpp -o polygonize.o
  g++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/include/gdal -I/usr/include -I'/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c proj.cpp -o proj.o
  proj.cpp: In function ‘Rcpp::LogicalVector CPL_set_data_dir(Rcpp::CharacterVector, bool)’:
  proj.cpp:247:3: error: ‘proj_context_set_search_paths’ was not declared in this scope
  proj_context_set_search_paths(PJ_DEFAULT_CTX, 1, &cp);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  proj.cpp:247:3: note: suggested alternative: ‘proj_context_destroy’
  proj_context_set_search_paths(PJ_DEFAULT_CTX, 1, &cp);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  proj_context_destroy
  proj.cpp: In function ‘Rcpp::LogicalVector CPL_use_proj4_init_rules(Rcpp::IntegerVector)’:
  proj.cpp:261:2: error: ‘proj_context_use_proj4_init_rules’ was not declared in this scope
  proj_context_use_proj4_init_rules(PJ_DEFAULT_CTX, v[0]);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  proj.cpp:261:2: note: suggested alternative: ‘CPL_use_proj4_init_rules’
  proj_context_use_proj4_init_rules(PJ_DEFAULT_CTX, v[0]);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  CPL_use_proj4_init_rules
  proj.cpp: In function ‘Rcpp::List CPL_proj_is_valid(std::__cxx11::string)’:
  proj.cpp:277:2: error: ‘proj_context_use_proj4_init_rules’ was not declared in this scope
  proj_context_use_proj4_init_rules(PJ_DEFAULT_CTX, 1);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  proj.cpp:277:2: note: suggested alternative: ‘CPL_use_proj4_init_rules’
  proj_context_use_proj4_init_rules(PJ_DEFAULT_CTX, 1);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  CPL_use_proj4_init_rules
  proj.cpp: In function ‘Rcpp::NumericMatrix CPL_proj_direct(Rcpp::CharacterVector, Rcpp::NumericMatrix, bool, bool, bool)’:
  proj.cpp:314:2: error: ‘proj_context_use_proj4_init_rules’ was not declared in this scope
  proj_context_use_proj4_init_rules(PJ_DEFAULT_CTX, 1); // FIXME: needed?
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  proj.cpp:314:2: note: suggested alternative: ‘CPL_use_proj4_init_rules’
  proj_context_use_proj4_init_rules(PJ_DEFAULT_CTX, 1); // FIXME: needed?
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  CPL_use_proj4_init_rules
  proj.cpp:324:14: error: ‘proj_normalize_for_visualization’ was not declared in this scope
  PJ *NewP = proj_normalize_for_visualization(PJ_DEFAULT_CTX, P);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  make: *** [/usr/local/lib/R/etc/Makeconf:204：proj.o] 错误 1
  ERROR: compilation failed for package ‘sf’
• removing ‘/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/sf’
• restoring previous ‘/home/yuanjiayj/R/mips64el-unknown-linux-gnuabi64-library/4.4/sf’

下载的程序包在
‘/home/yuanjiayj/tmp/RtmpFebqNf/downloaded_packages’里
警告信息:
In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, :
安装程序包‘sf’时退出狀態的值不是0

[yuanjiayj]

so far ,I only can install 1.0-14 in my computer.

[edzer]

Looks like a broken proj install: any chance of updating it (it is now at version 9.3.1...), maybe along with gdal and geos?