From a3149a441379998ebbee45810f97ff376af2768b Mon Sep 17 00:00:00 2001 From: "Leonardo de Oliveira Martins (QIB)" Date: Fri, 22 Sep 2023 17:40:36 +0100 Subject: [PATCH] added coguk link and removed (unused) GISAID table --- data/README.md | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/data/README.md b/data/README.md index 33f90bb..174bb42 100644 --- a/data/README.md +++ b/data/README.md @@ -18,6 +18,4 @@ you have access, to the unaligned sequences at [GISAID](https://www.gisaid.org/) The files [04.sample_1_1k.names](04.sample_1_1k.names) and [04.sample_3_5k.names](04.sample_3_5k.names) contain the sequences names of the samples used in the manuscript, and can all be found in the reference alignment above. -The file [04.samples_1_and_3.gisaid.tsv](04.samples_1_and_3.gisaid.tsv) contains the GISAID ID for the subset of sequences in -the manuscript which were deposited to GISAID, noticing that in general only those with less than 10% uncertainty were -uploaded. +For the timing analyses, we used [the COGUK data set](https://www.cogconsortium.uk/) ("Unmasked alignment" available from [the archived version of 7th May 2023](https://webarchive.nationalarchives.gov.uk/ukgwa/20230507102210/https://www.cogconsortium.uk/priority-areas/data-linkage-analysis/public-data-analysis/))