diff --git a/.github/workflows/doc-deploy.yaml b/.github/workflows/doc-deploy.yaml index fb20c62..70b88eb 100644 --- a/.github/workflows/doc-deploy.yaml +++ b/.github/workflows/doc-deploy.yaml @@ -11,9 +11,9 @@ jobs: with: persist-credentials: false - name: Set up Python 3.10.5 - uses: actions/setup-python@v1 + uses: actions/setup-python@v4 with: - python-version: 3.10.5 + python-version: 3.10 - name: Install dependencies run: poetry install diff --git a/.github/workflows/push.yml b/.github/workflows/push.yml new file mode 100644 index 0000000..e5cad6c --- /dev/null +++ b/.github/workflows/push.yml @@ -0,0 +1,35 @@ +name: push +on: + push: + branches: [ main ] + +env: + IMAGE_NAME: pyro-risks + DOCKERHUB_USER: ${{ secrets.DOCKERHUB_LOGIN }} + +jobs: + docker: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - name: Build docker + run: docker compose build -t $DOCKERHUB_USER/$IMAGE_NAME:latest + - name: Login to DockerHub + uses: docker/login-action@v3 + with: + username: ${{ secrets.DOCKERHUB_LOGIN }} + password: ${{ secrets.DOCKERHUB_PW }} + - name: Push to hub + run: docker push $DOCKERHUB_USER/$IMAGE_NAME:latest + - name: Login to GHCR + uses: docker/login-action@v3 + with: + registry: ghcr.io + username: ${{ github.repository_owner }} + password: ${{ secrets.GITHUB_TOKEN }} + - name: Push to container registry + run: | + IMAGE_ID=ghcr.io/${{ github.repository_owner }}/$IMAGE_NAME + IMAGE_ID=$(echo $IMAGE_ID | tr '[A-Z]' '[a-z]') + docker tag $DOCKERHUB_USER/$IMAGE_NAME:latest $IMAGE_ID:latest + docker push $IMAGE_ID:latest \ No newline at end of file diff --git a/.github/workflows/scripts.yml b/.github/workflows/scripts.yml index e26d178..28a91b5 100644 --- a/.github/workflows/scripts.yml +++ b/.github/workflows/scripts.yml @@ -16,12 +16,18 @@ jobs: with: python-version: 3.10.5 + - uses: s-weigand/setup-conda@v1 + with: + activate-conda: false + - run: conda install conda-lock + - run: conda-lock install -n pyro-risks pyrorisks.conda-lock.yml + - run: conda activate pyro-risks + - name: Install Poetry uses: snok/install-poetry@v1 with: version: 1.8.1 - virtualenvs-create: true - virtualenvs-in-project: true + virtualenvs-create: false - name: Install dependencies run: poetry install diff --git a/Dockerfile b/Dockerfile index b9762d7..3390287 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,19 +1,42 @@ FROM python:3.10-buster +WORKDIR /app + +RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh && \ + /bin/bash /tmp/miniconda.sh -b -p /opt/conda && \ + rm /tmp/miniconda.sh + +ENV PATH=/opt/conda/bin:$PATH + +RUN conda install -c conda-forge conda-lock + +# Install and activate pyrorisks environment + +COPY pyrorisks.conda-lock.yml pyrorisks.conda-lock.yml + +RUN conda-lock install --name pyrorisks pyrorisks.conda-lock.yml && conda clean -a + +ENV CONDA_DEFAULT_ENV=pyrorisks +ENV PATH /opt/conda/envs/${CONDA_DEFAULT_ENV}/bin:$PATH +RUN echo "conda activate ${CONDA_DEFAULT_ENV}" >> ~/.bashrc + +# Install poetry RUN pip install poetry==1.8.1 +# Set environment variables for poetry ENV POETRY_NO_INTERACTION=1 \ POETRY_VIRTUALENVS_IN_PROJECT=1 \ - POETRY_VIRTUALENVS_CREATE=1 \ + POETRY_VIRTUALENVS_CREATE=0 \ POETRY_CACHE_DIR=/tmp/poetry_cache \ - VIRTUAL_ENV=/app/.venv \ - PATH="/app/.venv/bin:$PATH" - -WORKDIR /app + VIRTUAL_ENV=/opt/conda/envs/${CONDA_DEFAULT_ENV} \ + PATH="/opt/conda/envs/${CONDA_DEFAULT_ENV}/bin:$PATH" \ + PYTHONPATH="/opt/conda/envs/${CONDA_DEFAULT_ENV}/lib/python3.10/site-packages:${PYTHONPATH}" -COPY pyrorisks ./pyrorisks COPY app ./app -COPY build ./build +COPY pyrorisks ./pyrorisks COPY pyproject.toml poetry.lock README.md ./ +# Install pyrorisks package in pyrorisks conda environment RUN poetry install + +CMD ["bash"] diff --git a/app/api/routes/fwi.py b/app/api/routes/fwi.py new file mode 100644 index 0000000..c824fe1 --- /dev/null +++ b/app/api/routes/fwi.py @@ -0,0 +1,28 @@ +# Copyright (C) 2021-2022, Pyronear. + +# This program is licensed under the Apache License version 2. +# See LICENSE or go to for full license details. + +from typing import Dict, Any +from fastapi import APIRouter, Depends +from fastapi import HTTPException, status +from app.api.schemas import ScoreQueryParams, Score +from pyrorisks.platform_fwi.get_fwi_effis_score import get_fwi as _get_fwi + + +router = APIRouter() + + +@router.get( + path="/", + response_model=Score, + summary="Provide European Forest Fire Information System (EFFIS) Fire Weather Index (FWI) categories.", +) +async def get_fwi(query: ScoreQueryParams = Depends()) -> Dict[str, Any]: + results = _get_fwi(longitude=query.longitude, latitude=query.latitude, crs=query.crs) + if results is None: + raise HTTPException( + status_code=status.HTTP_404_NOT_FOUND, + detail=f"Fire Weather Index (FWI) for longitude {query.longitude} and latitude {query.latitude} was not found.", + ) + return results diff --git a/app/api/schemas.py b/app/api/schemas.py index 74bdf81..942d778 100644 --- a/app/api/schemas.py +++ b/app/api/schemas.py @@ -1,4 +1,4 @@ -# Copyright (C) 2021-2022, Pyronear. +# Copyright (C) 2020-2024, Pyronear. # This program is licensed under the Apache License version 2. # See LICENSE or go to for full license details. @@ -11,3 +11,22 @@ class RegionRisk(BaseModel): geocode: str = Field(..., examples=["01"]) score: float = Field(..., gt=0, lt=1, examples=[0.5]) explainability: Optional[str] = Field(None, examples=["weather"]) + + +class ScoreQueryParams(BaseModel): + longitude: float = Field(..., gt=-90.0, lt=90.0) + latitude: float = Field(..., gt=-180.0, lt=180.0) + crs: str = Field( + default="EPSG:4326", + examples=["EPSG:4326"], + description="Coordinate Reference System (CRS), Default to World Geodetic System CRS (EPSG:4326 / WGS84).", + ) + + +class Score(BaseModel): + longitude: float = Field(..., gt=-90.0, lt=90.0, examples=[2.638828]) + latitude: float = Field(..., gt=-180.0, lt=180.0, examples=[48.391842]) + crs: str = Field(..., examples=["EPSG:4326"], description="Coordinate Reference System (CRS).") + score: str = Field(..., examples=["fwi"], description="Score name.") + value: float = Field(..., examples=[2, 1], description="Score value.") + date: str = Field(..., examples=["2024-01-01"], description="Date in %Y-%m-%d format") diff --git a/app/config.py b/app/config.py deleted file mode 100644 index 45c32ef..0000000 --- a/app/config.py +++ /dev/null @@ -1,21 +0,0 @@ -# Copyright (C) 2021-2022, Pyronear. - -# This program is licensed under the Apache License version 2. -# See LICENSE or go to for full license details. - -import os -import secrets - - -PROJECT_NAME: str = "PyroRisk" -PROJECT_DESCRIPTION: str = "Wildfire risk estimation" -VERSION: str = "0.1.0a0" -DEBUG: bool = os.environ.get("DEBUG", "") != "False" -LOGO_URL: str = "https://pyronear.org/img/logo_letters.png" - - -SECRET_KEY: str = secrets.token_urlsafe(32) -if DEBUG: - # To keep the same Auth at every app loading in debug mode and not having to redo the auth. - debug_secret_key = "000000000000000000000000000000000000" - SECRET_KEY = debug_secret_key diff --git a/app/core/__init__.py b/app/core/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/core/config.py b/app/core/config.py new file mode 100644 index 0000000..bd1ec0f --- /dev/null +++ b/app/core/config.py @@ -0,0 +1,34 @@ +# Copyright (C) 2021-2024, Pyronear. + +# This program is licensed under the Apache License 2.0. +# See LICENSE or go to for full license details. + +from pydantic_settings import BaseSettings, SettingsConfigDict +from pydantic import field_validator +from typing import Optional + +__all__ = ["settings"] + + +class Settings(BaseSettings): + model_config = SettingsConfigDict(env_file="./../../.env") + + PROJECT_NAME: str = "Pyrorisks" + PROJECT_DESCRIPTION: str = "API for wildfire risk estimation" + LOGO_URL: str = "https://pyronear.org/img/logo_letters.png" + VERSION: str = "0.1.0" + DEBUG: bool = False + + @field_validator("DEBUG", mode="before") + @classmethod + def transform_debug(cls, value: str) -> bool: + return value != "False" + + S3_BUCKET_NAME: Optional[str] = None + S3_ACCESS_KEY: Optional[str] = None + S3_SECRET_KEY: Optional[str] = None + S3_REGION: Optional[str] = None + S3_ENDPOINT_URL: Optional[str] = None + + +settings = Settings() # type: ignore[call-arg] diff --git a/app/main.py b/app/main.py index 21fae27..166b1dd 100644 --- a/app/main.py +++ b/app/main.py @@ -7,19 +7,19 @@ from fastapi import FastAPI, Request from fastapi.openapi.utils import get_openapi -from app import config as cfg -from app.api.routes import risk +from app.core.config import settings +from app.api.routes import fwi app = FastAPI( - title=cfg.PROJECT_NAME, - description=cfg.PROJECT_DESCRIPTION, - debug=cfg.DEBUG, - version=cfg.VERSION, + title=settings.PROJECT_NAME, + description=settings.PROJECT_DESCRIPTION, + debug=settings.DEBUG, + version=settings.VERSION, ) # Routing 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cb1a624..bbc6f2b 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -1,5 +1,3 @@ -version: '3.7' - services: web: build: . @@ -9,5 +7,10 @@ services: ports: - ${PORT}:8000 environment: - - CDS_UID=${CDS_UID} - - CDS_API_KEY=${CDS_API_KEY} + - DEBUG=${DEBUG} + - S3_BUCKET_NAME=${S3_BUCKET_NAME} + - S3_ACCESS_KEY=${S3_ACCESS_KEY} + - S3_SECRET_KEY=${S3_SECRET_KEY} + - S3_REGION=${S3_REGION} + - S3_ENDPOINT_URL=${S3_ENDPOINT_URL} + platform: "linux/amd64" \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index 213b6de..9e86f1e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -59,6 +59,35 @@ doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphin test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] trio = ["trio (>=0.23)"] +[[package]] +name = "appnope" +version = "0.1.4" +description = "Disable App Nap on 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"^0.25" +pydantic-settings = "^2.3.4" +pydantic = "^2.8.2" [tool.poetry.group.docs.dependencies] @@ -90,6 +94,7 @@ module = [ "shapely", "shapely.geometry", "rasterio", + "rasterio.features", "cdsapi", "urllib3", "joblib", @@ -99,11 +104,23 @@ module = [ "pyrorisks", "requests", "boto3", - "pyro_risks.utils.fwi_helpers", - "pyro_risks.utils.s3" ] ignore_missing_imports = true [tool.black] line-length = 120 -target-version = ['py310'] \ No newline at end of file +target-version = ['py310'] + +[tool.conda-lock] +skip-non-conda-lock = true +channels = [ + 'conda-forge' +] +platforms = [ + 'linux-64', 'linux-aarch64', 'osx-64', 'osx-arm64', 'win-64', +] + +[tool.conda-lock.dependencies] +pip = "*" +python = "3.10.14" +rasterio = "1.3.10" diff --git a/pyrorisks.conda-lock.yml b/pyrorisks.conda-lock.yml new file mode 100644 index 0000000..5c208c0 --- /dev/null +++ b/pyrorisks.conda-lock.yml @@ -0,0 +1,11345 @@ +# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). DO NOT EDIT! +# +# A "lock file" contains a concrete list of package versions (with checksums) to be installed. Unlike +# e.g. `conda env create`, the resulting environment will not change as new package versions become +# available, unless you explicitly update the lock file. +# +# Install this environment as "YOURENV" with: +# conda-lock install -n YOURENV pyrorisks.conda-lock.yml +# To update a single package to the latest version compatible with the version constraints in the source: +# conda-lock lock --lockfile pyrorisks.conda-lock.yml --update PACKAGE +# To re-solve the entire environment, e.g. after changing a version constraint in the source file: +# conda-lock -f pyproject.toml --lockfile pyrorisks.conda-lock.yml +version: 1 +metadata: + content_hash: + linux-64: 80156c69eae1269dfb81febcc09ba24fb17f0ac5ada956fb960e16f0954fe26c + osx-arm64: 16cf561307bbd74954a285ef8301f79d994acb3381baac0894ef0ab8f4e20ced + osx-64: 7c53b84de10b03768e174b9b97e7ed7ed305fdf91575e2ccf37259746e28b00d + win-64: cc3bf9d5b3ea0d411415dcf56edc0b550c64360eb638908b12ee9ed1b790627d + linux-aarch64: 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9a17230f95733c04dc40a2b1e5491d74 + sha256: 768e30dc513568491818fb068ee867c57c514b553915536da09e5d10b4ebf3c3 + category: main + optional: false diff --git a/pyrorisks/platform_fwi/get_fwi_effis_score.py b/pyrorisks/platform_fwi/get_fwi_effis_score.py index 3f7e289..27e1423 100644 --- a/pyrorisks/platform_fwi/get_fwi_effis_score.py +++ b/pyrorisks/platform_fwi/get_fwi_effis_score.py @@ -1,9 +1,11 @@ from dotenv import load_dotenv import os -from datetime import date +import datetime import geopandas as gpd from shapely.geometry import Point, Polygon -from pyro_risks.utils.s3 import S3Bucket +from pyrorisks.utils.s3 import S3Bucket +from typing import Dict, Any, Optional +from pyrorisks.utils.fwi_helpers import FWIHelpers __all__ = ["get_score"] @@ -28,7 +30,7 @@ def get_score(lat, lon): aws_secret_key=os.environ["AWS_SECRET_KEY"], ) - retrieved_date = date.today().strftime("%Y-%m-%d") + retrieved_date = datetime.date.today().strftime("%Y-%m-%d") year, month, day = retrieved_date.split("-") json_content = s3.read_json_from_s3( @@ -40,3 +42,35 @@ def get_score(lat, lon): gdf["fwi_category_for_point"] = gdf.apply(lambda row: point_fwi_category(row, point_coords), axis=1) point_fwi_score = gdf.dropna().iloc[0]["fwi_category"] return point_fwi_score + + +def get_fwi( + longitude: float, latitude: float, crs: str = "EPSG:4326", date: Optional[str] = None +) -> Optional[Dict[str, Any]]: + today_date_str_url = datetime.date.today().strftime("%Y-%m-%d") if date is None else date + effis_tiff_file_url = ( + "https://ies-ows.jrc.ec.europa.eu/effis?LAYERS=ecmwf007.fwi&FORMAT=image/tiff&TRANSPARENT=true&SINGLETILE=false&SERVICE=wms&VERSION=1.1.1&REQUEST=GetMap&STYLES=&SRS=EPSG:4326&BBOX=-6.0,41.0,10.0,52.0&WIDTH=1600&HEIGHT=1200&TIME=" + + today_date_str_url + ) + fwi = FWIHelpers() + point = Point(longitude, latitude) + gdf_fwi = fwi.get_fwi(effis_tiff_file_url) + + if gdf_fwi is not None: + gdf_fwi["fwi_category"] = gdf_fwi.apply(lambda row: fwi.fwi_category(row["fwi_pixel_value"]), axis=1) + gdf_fwi["fwi_category_for_point"] = gdf_fwi.apply(lambda row: point_fwi_category(row, point), axis=1) + gdf_fwi = gdf_fwi.drop("fwi_pixel_value", axis=1) + point_fwi_score = gdf_fwi.dropna().iloc[0]["fwi_category"] + + results = { + "longitude": longitude, + "latitude": latitude, + "crs": crs, + "score": "fwi", + "value": float(point_fwi_score), + "date": today_date_str_url, + } + + else: + results = None + return results diff --git a/pyrorisks/platform_fwi/main.py b/pyrorisks/platform_fwi/main.py index c587dc8..0b1b9c4 100644 --- a/pyrorisks/platform_fwi/main.py +++ b/pyrorisks/platform_fwi/main.py @@ -5,8 +5,8 @@ from dotenv import load_dotenv # Pyro Risks Imports -from pyro_risks.utils.fwi_helpers import FWIHelpers -from pyro_risks.utils.s3 import S3Bucket +from pyrorisks.utils.fwi_helpers import FWIHelpers +from pyrorisks.utils.s3 import S3Bucket BASE_URL = "https://ies-ows.jrc.ec.europa.eu/effis" diff --git a/pyrorisks/utils/fwi_helpers.py b/pyrorisks/utils/fwi_helpers.py index 083428f..0753489 100644 --- a/pyrorisks/utils/fwi_helpers.py +++ b/pyrorisks/utils/fwi_helpers.py @@ -1,3 +1,4 @@ +from rasterio.features import shapes import rasterio import geopandas as gpd import requests @@ -40,7 +41,7 @@ def get_fwi(self, tiff_url: str) -> Optional[gpd.GeoDataFrame]: image = src.read(1) # first band results = ( {"properties": {"fwi_pixel_value": v}, "geometry": s} - for i, (s, v) in enumerate(rasterio.features.shapes(image, mask=mask, transform=data["transform"])) + for i, (s, v) in enumerate(shapes(image, mask=mask, transform=data["transform"])) ) geoms = list(results) diff --git a/test/test_core.py b/test/test_core.py index 4449e77..ada73b9 100644 --- a/test/test_core.py +++ b/test/test_core.py @@ -5,13 +5,13 @@ import unittest -import pyro_risks +import pyrorisks class CoreTester(unittest.TestCase): # Template unittest def test_version(self): - self.assertEqual(len(pyro_risks.__version__.split(".")), 3) + self.assertEqual(len(pyrorisks.__version__.split(".")), 3) if __name__ == "__main__":