diff --git a/.github/workflows/run_pipeline.yml b/.github/workflows/run_pipeline.yml
index 8403490..2697ab8 100644
--- a/.github/workflows/run_pipeline.yml
+++ b/.github/workflows/run_pipeline.yml
@@ -29,7 +29,7 @@ jobs:
       - name: Install and set up transvar
         run: |
           . transvar_env_vars.sh
-          bash install_transvar_dependencies.sh
+          sudo apt install -y samtools tabix
           bash set_up_transvar.sh
       - name: Update file
         run: |
diff --git a/.github/workflows/unit_tests.yml b/.github/workflows/unit_tests.yml
index 0e6a680..5bfb411 100644
--- a/.github/workflows/unit_tests.yml
+++ b/.github/workflows/unit_tests.yml
@@ -23,7 +23,7 @@ jobs:
       - name: Install and set up transvar
         run: |
           . transvar_env_vars.sh
-          bash install_transvar_dependencies.sh
+          sudo apt install -y samtools tabix
           bash set_up_transvar.sh
       - name: Run tests
         # -W because of transvar
diff --git a/Dockerfile b/Dockerfile
index 14044fa..00722b8 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -21,6 +21,6 @@ COPY ./*.sh /api/
 COPY ./config.json /api/
 COPY ./data /api/data
 
-RUN bash install_transvar_dependencies.sh
+RUN apt install -y samtools tabix
 
 CMD ["bash", "docker_start.sh"]