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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<div id="projectname">PISM, A Parallel Ice Sheet Model
 <span id="projectnumber">stable v2.1-1-g6902d5502 committed by Ed Bueler on 2023-12-20 08:38:27 -0800</span>
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<li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_bd6cf25b8a2a2d51ccf43c15340b9536.html">earth</a></li> </ul>
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<a href="BedDef_8cc.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// Copyright (C) 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2022, 2023 Constantine Khroulev</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">//</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// This file is part of PISM.</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">//</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// PISM is free software; you can redistribute it and/or modify it under the</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">// terms of the GNU General Public License as published by the Free Software</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// Foundation; either version 3 of the License, or (at your option) any later</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// version.</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">//</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// PISM is distributed in the hope that it will be useful, but WITHOUT ANY</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// FOR A PARTICULAR PURPOSE. See the GNU General Public License for more</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// details.</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">//</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// You should have received a copy of the GNU General Public License</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// along with PISM; if not, write to the Free Software</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span>  </div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include "pism/earth/BedDef.hh"</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="preprocessor">#include "pism/util/Grid.hh"</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="preprocessor">#include "pism/util/ConfigInterface.hh"</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="preprocessor">#include "pism/util/Context.hh"</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span>  </div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="keyword">namespace </span><a class="code" href="namespacepism.html">pism</a> {</div>
<div class="line"><a name="l00025"></a><span class="lineno"><a class="line" href="namespacepism_1_1bed.html"> 25</a></span> <span class="keyword">namespace </span>bed {</div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  </div>
<div class="line"><a name="l00027"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_a8ed0cb71c8e8b31e37f129ab3f9a37b3.html#a8ed0cb71c8e8b31e37f129ab3f9a37b3"> 27</a></span> <a class="code" href="classpism_1_1bed_1_1BedDef_a8ed0cb71c8e8b31e37f129ab3f9a37b3.html#a8ed0cb71c8e8b31e37f129ab3f9a37b3">BedDef::BedDef</a>(std::shared_ptr<const Grid> grid)</div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span>  : <a class="code" href="classpism_1_1Component.html">Component</a>(grid),</div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span>  m_wide_stencil(m_config->get_number(<span class="stringliteral">"grid.max_stencil_width"</span>)),</div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span>  m_topg(m_grid, <span class="stringliteral">"topg"</span>),</div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span>  m_topg_last(m_grid, <span class="stringliteral">"topg"</span>),</div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span>  m_uplift(m_grid, <span class="stringliteral">"dbdt"</span>)</div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> {</div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span>  </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>.<a class="code" href="classpism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4.html#af9eece42153cd03bfc8ba237ae5310c4">metadata</a>(0)</div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span>  .<a class="code" href="classpism_1_1VariableMetadata_a5e378cf7077ab00a808ef446a79dc34d.html#a5e378cf7077ab00a808ef446a79dc34d">long_name</a>(<span class="stringliteral">"bedrock surface elevation"</span>)</div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span>  .<a class="code" href="classpism_1_1VariableMetadata_ae73185be0693a8607b8e0f74558e11e4.html#ae73185be0693a8607b8e0f74558e11e4">units</a>(<span class="stringliteral">"m"</span>)</div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span>  .<a class="code" href="classpism_1_1VariableMetadata_a2b7791d4794fd3deb3838e75b495ce33.html#a2b7791d4794fd3deb3838e75b495ce33">standard_name</a>(<span class="stringliteral">"bedrock_altitude"</span>);</div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span>  </div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_a67a44c4008ee6989c1c0ac3ef8276fa4.html#a67a44c4008ee6989c1c0ac3ef8276fa4">m_topg_last</a>.<a class="code" href="classpism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4.html#af9eece42153cd03bfc8ba237ae5310c4">metadata</a>(0)</div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span>  .<a class="code" href="classpism_1_1VariableMetadata_a5e378cf7077ab00a808ef446a79dc34d.html#a5e378cf7077ab00a808ef446a79dc34d">long_name</a>(<span class="stringliteral">"bedrock surface elevation"</span>)</div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span>  .<a class="code" href="classpism_1_1VariableMetadata_ae73185be0693a8607b8e0f74558e11e4.html#ae73185be0693a8607b8e0f74558e11e4">units</a>(<span class="stringliteral">"m"</span>)</div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  .<a class="code" href="classpism_1_1VariableMetadata_a2b7791d4794fd3deb3838e75b495ce33.html#a2b7791d4794fd3deb3838e75b495ce33">standard_name</a>(<span class="stringliteral">"bedrock_altitude"</span>);</div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span>  </div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">m_uplift</a>.<a class="code" href="classpism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4.html#af9eece42153cd03bfc8ba237ae5310c4">metadata</a>(0)</div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span>  .<a class="code" href="classpism_1_1VariableMetadata_a5e378cf7077ab00a808ef446a79dc34d.html#a5e378cf7077ab00a808ef446a79dc34d">long_name</a>(<span class="stringliteral">"bedrock uplift rate"</span>)</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span>  .<a class="code" href="classpism_1_1VariableMetadata_ae73185be0693a8607b8e0f74558e11e4.html#ae73185be0693a8607b8e0f74558e11e4">units</a>(<span class="stringliteral">"m s-1"</span>)</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  .<a class="code" href="classpism_1_1VariableMetadata_a2b7791d4794fd3deb3838e75b495ce33.html#a2b7791d4794fd3deb3838e75b495ce33">standard_name</a>(<span class="stringliteral">"tendency_of_bedrock_altitude"</span>);</div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> }</div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span>  </div>
<div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_ac6be925d2b8a3a4994d10636df4954b9.html#ac6be925d2b8a3a4994d10636df4954b9"> 51</a></span> <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &<a class="code" href="classpism_1_1bed_1_1BedDef_ac6be925d2b8a3a4994d10636df4954b9.html#ac6be925d2b8a3a4994d10636df4954b9">BedDef::bed_elevation</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  <span class="keywordflow">return</span> <a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>;</div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> }</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span>  </div>
<div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_ab864f5da11db7bcae52e2bfe6fe7a8af.html#ab864f5da11db7bcae52e2bfe6fe7a8af"> 55</a></span> <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &<a class="code" href="classpism_1_1bed_1_1BedDef_ab864f5da11db7bcae52e2bfe6fe7a8af.html#ab864f5da11db7bcae52e2bfe6fe7a8af">BedDef::uplift</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span>  <span class="keywordflow">return</span> <a class="code" href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">m_uplift</a>;</div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> }</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  </div>
<div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_a432572d80406df7620308bfc1e6506de.html#a432572d80406df7620308bfc1e6506de"> 59</a></span> <span class="keywordtype">void</span> <a class="code" href="classpism_1_1bed_1_1BedDef_a432572d80406df7620308bfc1e6506de.html#a432572d80406df7620308bfc1e6506de">BedDef::define_model_state_impl</a>(<span class="keyword">const</span> <a class="code" href="classpism_1_1File.html">File</a> &output)<span class="keyword"> const </span>{</div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">m_uplift</a>.<a class="code" href="classpism_1_1array_1_1Array_a3e1a5859cef073a95e5e0cc5f1cc0fdb.html#a3e1a5859cef073a95e5e0cc5f1cc0fdb">define</a>(output, <a class="code" href="namespacepism_1_1io_a53ffb40793c398e10644fbd2ecda3e77.html#a53ffb40793c398e10644fbd2ecda3e77a6a72c64f82168bec6bf8b648a86648de">io::PISM_DOUBLE</a>);</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>.<a class="code" href="classpism_1_1array_1_1Array_a3e1a5859cef073a95e5e0cc5f1cc0fdb.html#a3e1a5859cef073a95e5e0cc5f1cc0fdb">define</a>(output, <a class="code" href="namespacepism_1_1io_a53ffb40793c398e10644fbd2ecda3e77.html#a53ffb40793c398e10644fbd2ecda3e77a6a72c64f82168bec6bf8b648a86648de">io::PISM_DOUBLE</a>);</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span> }</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  </div>
<div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_a18e5652bb7916fa9c4cdb5cfdaa5b906.html#a18e5652bb7916fa9c4cdb5cfdaa5b906"> 64</a></span> <span class="keywordtype">void</span> <a class="code" href="classpism_1_1bed_1_1BedDef_a18e5652bb7916fa9c4cdb5cfdaa5b906.html#a18e5652bb7916fa9c4cdb5cfdaa5b906">BedDef::write_model_state_impl</a>(<span class="keyword">const</span> <a class="code" href="classpism_1_1File.html">File</a> &output)<span class="keyword"> const </span>{</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">m_uplift</a>.<a class="code" href="classpism_1_1array_1_1Array_a4cdaeb827d166a076668d2ab86416793.html#a4cdaeb827d166a076668d2ab86416793">write</a>(output);</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>.<a class="code" href="classpism_1_1array_1_1Array_a4cdaeb827d166a076668d2ab86416793.html#a4cdaeb827d166a076668d2ab86416793">write</a>(output);</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> }</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span>  </div>
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_a1aa2959595826063e459b756abfb73af.html#a1aa2959595826063e459b756abfb73af"> 69</a></span> <a class="code" href="namespacepism_a6154a990ba873c6ca606d8a320c441ac.html#a6154a990ba873c6ca606d8a320c441ac">DiagnosticList</a> <a class="code" href="classpism_1_1bed_1_1BedDef_a1aa2959595826063e459b756abfb73af.html#a1aa2959595826063e459b756abfb73af">BedDef::diagnostics_impl</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <a class="code" href="namespacepism_a6154a990ba873c6ca606d8a320c441ac.html#a6154a990ba873c6ca606d8a320c441ac">DiagnosticList</a> result;</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span>  result = { { <span class="stringliteral">"dbdt"</span>, <a class="code" href="classpism_1_1Diagnostic_a2648c1bc92c5e333ecad30e9a5687ea9.html#a2648c1bc92c5e333ecad30e9a5687ea9">Diagnostic::wrap</a>(<a class="code" href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">m_uplift</a>) }, { <span class="stringliteral">"topg"</span>, <a class="code" href="classpism_1_1Diagnostic_a2648c1bc92c5e333ecad30e9a5687ea9.html#a2648c1bc92c5e333ecad30e9a5687ea9">Diagnostic::wrap</a>(<a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>) } };</div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  </div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  <span class="keywordflow">return</span> result;</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> }</div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  </div>
<div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_a66ef0bdfce3ede4f98d5bb1889691879.html#a66ef0bdfce3ede4f98d5bb1889691879"> 76</a></span> <span class="keywordtype">void</span> <a class="code" href="classpism_1_1bed_1_1BedDef_a66ef0bdfce3ede4f98d5bb1889691879.html#a66ef0bdfce3ede4f98d5bb1889691879">BedDef::init</a>(<span class="keyword">const</span> <a class="code" href="structpism_1_1InputOptions.html">InputOptions</a> &opts, <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &ice_thickness,</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &sea_level_elevation) {</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  this-><a class="code" href="classpism_1_1bed_1_1BedDef_a86f2efe7f454589ff3337cee6a8a85f1.html#a86f2efe7f454589ff3337cee6a8a85f1">init_impl</a>(opts, ice_thickness, sea_level_elevation);</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span> }</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span> <span class="comment"></span> </div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> <span class="comment">//! Initialize using provided bed elevation and uplift.</span></div>
<div class="line"><a name="l00082"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_a7c744cc807f2de03773ab25475fea2ad.html#a7c744cc807f2de03773ab25475fea2ad"> 82</a></span> <span class="comment"></span><span class="keywordtype">void</span> <a class="code" href="classpism_1_1bed_1_1BedDef_a7c744cc807f2de03773ab25475fea2ad.html#a7c744cc807f2de03773ab25475fea2ad">BedDef::bootstrap</a>(<span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &bed_elevation, <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &bed_uplift,</div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &ice_thickness,</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &sea_level_elevation) {</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  this-><a class="code" href="classpism_1_1bed_1_1BedDef_a594a537f262d96b47a7cc527607f092b.html#a594a537f262d96b47a7cc527607f092b">bootstrap_impl</a>(bed_elevation, bed_uplift, ice_thickness, sea_level_elevation);</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> }</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  </div>
<div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_a594a537f262d96b47a7cc527607f092b.html#a594a537f262d96b47a7cc527607f092b"> 88</a></span> <span class="keywordtype">void</span> <a class="code" href="classpism_1_1bed_1_1BedDef_a594a537f262d96b47a7cc527607f092b.html#a594a537f262d96b47a7cc527607f092b">BedDef::bootstrap_impl</a>(<span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &bed_elevation, <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &bed_uplift,</div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &ice_thickness,</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &sea_level_elevation) {</div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>.<a class="code" href="classpism_1_1array_1_1Array2D_a7b9a0d8a83d5379f1debdcefce0fffae.html#a7b9a0d8a83d5379f1debdcefce0fffae">copy_from</a>(<a class="code" href="classpism_1_1bed_1_1BedDef_ac6be925d2b8a3a4994d10636df4954b9.html#ac6be925d2b8a3a4994d10636df4954b9">bed_elevation</a>);</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">m_uplift</a>.<a class="code" href="classpism_1_1array_1_1Array2D_a7b9a0d8a83d5379f1debdcefce0fffae.html#a7b9a0d8a83d5379f1debdcefce0fffae">copy_from</a>(bed_uplift);</div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span>  </div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  <span class="comment">// suppress a compiler warning:</span></div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  (void)ice_thickness;</div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  (void)sea_level_elevation;</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span> }</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  </div>
<div class="line"><a name="l00099"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_a753c0498dee5ee7db6b2129a6de6db70.html#a753c0498dee5ee7db6b2129a6de6db70"> 99</a></span> <span class="keywordtype">void</span> <a class="code" href="classpism_1_1bed_1_1BedDef_a753c0498dee5ee7db6b2129a6de6db70.html#a753c0498dee5ee7db6b2129a6de6db70">BedDef::update</a>(<span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &ice_thickness, <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &sea_level_elevation,</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  <span class="keywordtype">double</span> t, <span class="keywordtype">double</span> dt) {</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  this-><a class="code" href="classpism_1_1bed_1_1BedDef_a5cb44d4b40e7c254751d3fce3f366c4c.html#a5cb44d4b40e7c254751d3fce3f366c4c">update_impl</a>(ice_thickness, sea_level_elevation, t, dt);</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span> }</div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span> <span class="comment"></span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span> <span class="comment">//! Initialize from the context (input file and the "variables" database).</span></div>
<div class="line"><a name="l00105"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_a86f2efe7f454589ff3337cee6a8a85f1.html#a86f2efe7f454589ff3337cee6a8a85f1"> 105</a></span> <span class="comment"></span><span class="keywordtype">void</span> <a class="code" href="classpism_1_1bed_1_1BedDef_a86f2efe7f454589ff3337cee6a8a85f1.html#a86f2efe7f454589ff3337cee6a8a85f1">BedDef::init_impl</a>(<span class="keyword">const</span> <a class="code" href="structpism_1_1InputOptions.html">InputOptions</a> &opts, <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &ice_thickness,</div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &sea_level_elevation) {</div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  (void)ice_thickness;</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span>  (void)sea_level_elevation;</div>
<div class="line"><a name="l00109"></a><span class="lineno"> 109</span>  </div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  <span class="keywordflow">switch</span> (opts.<a class="code" href="structpism_1_1InputOptions_a0fe5db51286e55c31b1575dc9ecc5d70.html#a0fe5db51286e55c31b1575dc9ecc5d70">type</a>) {</div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  <span class="keywordflow">case</span> <a class="code" href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa6aff4b43552f00d5cc331453ff4029bc">INIT_RESTART</a>:</div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <span class="comment">// read bed elevation and uplift rate from file</span></div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  <a class="code" href="classpism_1_1Component_a29575eba605feccf4403d6b4ff0954a4.html#a29575eba605feccf4403d6b4ff0954a4">m_log</a>->message(2, <span class="stringliteral">" reading bed topography and uplift from %s ... \n"</span>,</div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  opts.<a class="code" href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">filename</a>.c_str());</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  <span class="comment">// re-starting</span></div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>.<a class="code" href="classpism_1_1array_1_1Array_a0326efd779d857755513901da9a54992.html#a0326efd779d857755513901da9a54992">read</a>(opts.<a class="code" href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">filename</a>, opts.<a class="code" href="structpism_1_1InputOptions_ae33c7fb4ca1317444d959bc3e1514ba4.html#ae33c7fb4ca1317444d959bc3e1514ba4">record</a>); <span class="comment">// fails if not found!</span></div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">m_uplift</a>.<a class="code" href="classpism_1_1array_1_1Array_a0326efd779d857755513901da9a54992.html#a0326efd779d857755513901da9a54992">read</a>(opts.<a class="code" href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">filename</a>, opts.<a class="code" href="structpism_1_1InputOptions_ae33c7fb4ca1317444d959bc3e1514ba4.html#ae33c7fb4ca1317444d959bc3e1514ba4">record</a>); <span class="comment">// fails if not found!</span></div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span>  <span class="keywordflow">break</span>;</div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <span class="keywordflow">case</span> <a class="code" href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa260aa6280296d9fffc338c9ecdaba861">INIT_BOOTSTRAP</a>:</div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  <span class="comment">// bootstrapping</span></div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>.<a class="code" href="classpism_1_1array_1_1Array_aa7de6be7e8f785321df81d9fd6518a16.html#aa7de6be7e8f785321df81d9fd6518a16">regrid</a>(opts.<a class="code" href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">filename</a>, <a class="code" href="classpism_1_1io_1_1Default.html">io::Default</a>(<a class="code" href="classpism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84.html#a28f298fc2133baae8cebf9dedf3b4d84">m_config</a>->get_number(<span class="stringliteral">"bootstrapping.defaults.bed"</span>)));</div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">m_uplift</a>.<a class="code" href="classpism_1_1array_1_1Array_aa7de6be7e8f785321df81d9fd6518a16.html#aa7de6be7e8f785321df81d9fd6518a16">regrid</a>(opts.<a class="code" href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">filename</a>,</div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  <a class="code" href="classpism_1_1io_1_1Default.html">io::Default</a>(<a class="code" href="classpism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84.html#a28f298fc2133baae8cebf9dedf3b4d84">m_config</a>->get_number(<span class="stringliteral">"bootstrapping.defaults.uplift"</span>)));</div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <span class="keywordflow">break</span>;</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span>  <span class="keywordflow">case</span> <a class="code" href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa5059a278caac36d24acebb622448a8dd">INIT_OTHER</a>:</div>
<div class="line"><a name="l00126"></a><span class="lineno"> 126</span>  <span class="keywordflow">default</span>: {</div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <span class="comment">// do nothing</span></div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  }</div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  }</div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span>  </div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span>  <span class="comment">// process -regrid_file and -regrid_vars</span></div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  <a class="code" href="classpism_1_1Component_a7737874c03a58a03498a33dc464d2ee9.html#a7737874c03a58a03498a33dc464d2ee9">regrid</a>(<span class="stringliteral">"bed deformation"</span>, <a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>);</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <span class="comment">// uplift is not a part of the model state, but the user may want to take it from a -regrid_file</span></div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  <span class="comment">// during bootstrapping</span></div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span>  <a class="code" href="classpism_1_1Component_a7737874c03a58a03498a33dc464d2ee9.html#a7737874c03a58a03498a33dc464d2ee9">regrid</a>(<span class="stringliteral">"bed deformation"</span>, <a class="code" href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">m_uplift</a>);</div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  </div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  std::string uplift_file = <a class="code" href="classpism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84.html#a28f298fc2133baae8cebf9dedf3b4d84">m_config</a>->get_string(<span class="stringliteral">"bed_deformation.bed_uplift_file"</span>);</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <span class="keywordflow">if</span> (not uplift_file.empty()) {</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  <a class="code" href="classpism_1_1Component_a29575eba605feccf4403d6b4ff0954a4.html#a29575eba605feccf4403d6b4ff0954a4">m_log</a>->message(2, <span class="stringliteral">" reading bed uplift from %s ... \n"</span>, uplift_file.c_str());</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">m_uplift</a>.<a class="code" href="classpism_1_1array_1_1Array_aa7de6be7e8f785321df81d9fd6518a16.html#aa7de6be7e8f785321df81d9fd6518a16">regrid</a>(uplift_file, <a class="code" href="classpism_1_1io_1_1Default_a81301b55ee990a23a3b8f8acde39f417.html#a81301b55ee990a23a3b8f8acde39f417">io::Default::Nil</a>());</div>
<div class="line"><a name="l00141"></a><span class="lineno"> 141</span>  }</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  </div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  std::string correction_file = <a class="code" href="classpism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84.html#a28f298fc2133baae8cebf9dedf3b4d84">m_config</a>->get_string(<span class="stringliteral">"bed_deformation.bed_topography_delta_file"</span>);</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  <span class="keywordflow">if</span> (not correction_file.empty()) {</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_a9fdfd938a24c115b188d1fda6feba751.html#a9fdfd938a24c115b188d1fda6feba751">apply_topg_offset</a>(correction_file);</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  }</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span>  </div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span>  <span class="comment">// this should be the last thing we do here</span></div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_a67a44c4008ee6989c1c0ac3ef8276fa4.html#a67a44c4008ee6989c1c0ac3ef8276fa4">m_topg_last</a>.<a class="code" href="classpism_1_1array_1_1Array2D_a7b9a0d8a83d5379f1debdcefce0fffae.html#a7b9a0d8a83d5379f1debdcefce0fffae">copy_from</a>(<a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>);</div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span> }</div>
<div class="line"><a name="l00151"></a><span class="lineno"> 151</span> <span class="comment"></span> </div>
<div class="line"><a name="l00152"></a><span class="lineno"> 152</span> <span class="comment">/*!</span></div>
<div class="line"><a name="l00153"></a><span class="lineno"> 153</span> <span class="comment"> * Apply a correction to the bed topography by reading topg_delta from filename.</span></div>
<div class="line"><a name="l00154"></a><span class="lineno"> 154</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00155"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_a9fdfd938a24c115b188d1fda6feba751.html#a9fdfd938a24c115b188d1fda6feba751"> 155</a></span> <span class="keywordtype">void</span> <a class="code" href="classpism_1_1bed_1_1BedDef_a9fdfd938a24c115b188d1fda6feba751.html#a9fdfd938a24c115b188d1fda6feba751">BedDef::apply_topg_offset</a>(<span class="keyword">const</span> std::string &filename) {</div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <a class="code" href="classpism_1_1Component_a29575eba605feccf4403d6b4ff0954a4.html#a29575eba605feccf4403d6b4ff0954a4">m_log</a>->message(2, <span class="stringliteral">" Adding a bed topography correction read in from %s...\n"</span>, filename.c_str());</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  </div>
<div class="line"><a name="l00158"></a><span class="lineno"> 158</span>  <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> topg_delta(<a class="code" href="classpism_1_1Component_a745aa37bc1b5da6db5bfc280ecb3c811.html#a745aa37bc1b5da6db5bfc280ecb3c811">m_grid</a>, <span class="stringliteral">"topg_delta"</span>);</div>
<div class="line"><a name="l00159"></a><span class="lineno"> 159</span>  topg_delta.<a class="code" href="classpism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4.html#af9eece42153cd03bfc8ba237ae5310c4">metadata</a>(0).<a class="code" href="classpism_1_1VariableMetadata_a5e378cf7077ab00a808ef446a79dc34d.html#a5e378cf7077ab00a808ef446a79dc34d">long_name</a>(<span class="stringliteral">"bed topography correction"</span>).<a class="code" href="classpism_1_1VariableMetadata_ae73185be0693a8607b8e0f74558e11e4.html#ae73185be0693a8607b8e0f74558e11e4">units</a>(<span class="stringliteral">"meters"</span>);</div>
<div class="line"><a name="l00160"></a><span class="lineno"> 160</span>  </div>
<div class="line"><a name="l00161"></a><span class="lineno"> 161</span>  topg_delta.<a class="code" href="classpism_1_1array_1_1Array_aa7de6be7e8f785321df81d9fd6518a16.html#aa7de6be7e8f785321df81d9fd6518a16">regrid</a>(filename, <a class="code" href="classpism_1_1io_1_1Default_a81301b55ee990a23a3b8f8acde39f417.html#a81301b55ee990a23a3b8f8acde39f417">io::Default::Nil</a>());</div>
<div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  </div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  <a class="code" href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">m_topg</a>.<a class="code" href="classpism_1_1array_1_1Array2D_af08ea254dfc85146e15571ca7abcf411.html#af08ea254dfc85146e15571ca7abcf411">add</a>(1.0, topg_delta);</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span> }</div>
<div class="line"><a name="l00165"></a><span class="lineno"> 165</span> <span class="comment"></span> </div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span> <span class="comment">//! Compute bed uplift (dt is in seconds).</span></div>
<div class="line"><a name="l00167"></a><span class="lineno"><a class="line" href="classpism_1_1bed_1_1BedDef_af1638a648ee96fa9090d2c828116d2a2.html#af1638a648ee96fa9090d2c828116d2a2"> 167</a></span> <span class="comment"></span><span class="keywordtype">void</span> <a class="code" href="classpism_1_1bed_1_1BedDef_af1638a648ee96fa9090d2c828116d2a2.html#af1638a648ee96fa9090d2c828116d2a2">BedDef::compute_uplift</a>(<span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &bed, <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &bed_last,</div>
<div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  <span class="keywordtype">double</span> dt, <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &result) {</div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  bed.<a class="code" href="classpism_1_1array_1_1Array2D_af08ea254dfc85146e15571ca7abcf411.html#af08ea254dfc85146e15571ca7abcf411">add</a>(-1, bed_last, result);<span class="comment"></span></div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span> <span class="comment"> //! uplift = (topg - topg_last) / dt</span></div>
<div class="line"><a name="l00171"></a><span class="lineno"> 171</span> <span class="comment"></span> result.<a class="code" href="classpism_1_1array_1_1Array_a7b700739a7f5845c95fa33375a497901.html#a7b700739a7f5845c95fa33375a497901">scale</a>(1.0 / dt);</div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span> }</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  </div>
<div class="line"><a name="l00174"></a><span class="lineno"><a class="line" href="namespacepism_1_1bed_af59fee6cf94f3938156841623abbafd4.html#af59fee6cf94f3938156841623abbafd4"> 174</a></span> <span class="keywordtype">double</span> <a class="code" href="namespacepism_1_1bed_af59fee6cf94f3938156841623abbafd4.html#af59fee6cf94f3938156841623abbafd4">compute_load</a>(<span class="keywordtype">double</span> bed, <span class="keywordtype">double</span> ice_thickness, <span class="keywordtype">double</span> sea_level,</div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  <span class="keywordtype">double</span> ice_density, <span class="keywordtype">double</span> ocean_density) {</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span>  </div>
<div class="line"><a name="l00177"></a><span class="lineno"> 177</span>  <span class="keywordtype">double</span></div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  ice_load = ice_thickness,</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  ocean_depth = <a class="code" href="namespacepism_1_1array_a8957d08741c6f48d1e554ac7ea98530a.html#a8957d08741c6f48d1e554ac7ea98530a">std::max</a>(sea_level - bed, 0.0),</div>
<div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  ocean_load = (ocean_density / ice_density) * ocean_depth;</div>
<div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  </div>
<div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="comment">// this excludes the load of ice shelves</span></div>
<div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <span class="keywordflow">return</span> ice_load > ocean_load ? ice_load : 0.0;</div>
<div class="line"><a name="l00184"></a><span class="lineno"> 184</span> }</div>
<div class="line"><a name="l00185"></a><span class="lineno"> 185</span> <span class="comment"></span> </div>
<div class="line"><a name="l00186"></a><span class="lineno"> 186</span> <span class="comment">/*! Compute the load on the bedrock in units of ice-equivalent thickness.</span></div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span> <span class="comment"> *</span></div>
<div class="line"><a name="l00188"></a><span class="lineno"> 188</span> <span class="comment"> */</span></div>
<div class="line"><a name="l00189"></a><span class="lineno"><a class="line" href="namespacepism_1_1bed_a840c1cbc5c333a373156ac6c78f0ad71.html#a840c1cbc5c333a373156ac6c78f0ad71"> 189</a></span> <span class="keywordtype">void</span> <a class="code" href="namespacepism_1_1bed_af59fee6cf94f3938156841623abbafd4.html#af59fee6cf94f3938156841623abbafd4">compute_load</a>(<span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &bed_elevation,</div>
<div class="line"><a name="l00190"></a><span class="lineno"> 190</span>  <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &ice_thickness,</div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  <span class="keyword">const</span> <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &sea_level_elevation,</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span>  <a class="code" href="classpism_1_1array_1_1Scalar.html">array::Scalar</a> &result) {</div>
<div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  </div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <a class="code" href="classpism_1_1Config_a4dc1634c0eac358eb86303633024f810.html#a4dc1634c0eac358eb86303633024f810">Config::ConstPtr</a> config = result.<a class="code" href="classpism_1_1array_1_1Array_a982fca110a5d7011f681b928b20e3577.html#a982fca110a5d7011f681b928b20e3577">grid</a>()->ctx()->config();</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  </div>
<div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  <span class="keyword">const</span> <span class="keywordtype">double</span></div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  ice_density = config->get_number(<span class="stringliteral">"constants.ice.density"</span>),</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  ocean_density = config->get_number(<span class="stringliteral">"constants.sea_water.density"</span>);</div>
<div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  </div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  <a class="code" href="classpism_1_1array_1_1AccessScope.html">array::AccessScope</a> list{&bed_elevation, &ice_thickness, &sea_level_elevation, &result};</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  </div>
<div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <span class="keywordflow">for</span> (<span class="keyword">auto</span> p = result.<a class="code" href="classpism_1_1array_1_1Array_a982fca110a5d7011f681b928b20e3577.html#a982fca110a5d7011f681b928b20e3577">grid</a>()->points(); p; p.next()) {</div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  <span class="keyword">const</span> <span class="keywordtype">int</span> i = p.i(), j = p.j();</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span>  </div>
<div class="line"><a name="l00205"></a><span class="lineno"> 205</span>  result(i, j) = <a class="code" href="namespacepism_1_1bed_af59fee6cf94f3938156841623abbafd4.html#af59fee6cf94f3938156841623abbafd4">compute_load</a>(bed_elevation(i, j),</div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  ice_thickness(i, j),</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  sea_level_elevation(i, j),</div>
<div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  ice_density, ocean_density);</div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  }</div>
<div class="line"><a name="l00210"></a><span class="lineno"> 210</span> }</div>
<div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  </div>
<div class="line"><a name="l00212"></a><span class="lineno"> 212</span> } <span class="comment">// end of namespace bed</span></div>
<div class="line"><a name="l00213"></a><span class="lineno"> 213</span> } <span class="comment">// end of namespace pism</span></div>
<div class="ttc" id="aclasspism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84_html_a28f298fc2133baae8cebf9dedf3b4d84"><div class="ttname"><a href="classpism_1_1Component_a28f298fc2133baae8cebf9dedf3b4d84.html#a28f298fc2133baae8cebf9dedf3b4d84">pism::Component::m_config</a></div><div class="ttdeci">const Config::ConstPtr m_config</div><div class="ttdoc">configuration database used by this component</div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00158">Component.hh:158</a></div></div>
<div class="ttc" id="aclasspism_1_1Component_a29575eba605feccf4403d6b4ff0954a4_html_a29575eba605feccf4403d6b4ff0954a4"><div class="ttname"><a href="classpism_1_1Component_a29575eba605feccf4403d6b4ff0954a4.html#a29575eba605feccf4403d6b4ff0954a4">pism::Component::m_log</a></div><div class="ttdeci">const Logger::ConstPtr m_log</div><div class="ttdoc">logger (for easy access)</div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00162">Component.hh:162</a></div></div>
<div class="ttc" id="aclasspism_1_1Component_a745aa37bc1b5da6db5bfc280ecb3c811_html_a745aa37bc1b5da6db5bfc280ecb3c811"><div class="ttname"><a href="classpism_1_1Component_a745aa37bc1b5da6db5bfc280ecb3c811.html#a745aa37bc1b5da6db5bfc280ecb3c811">pism::Component::m_grid</a></div><div class="ttdeci">const std::shared_ptr< const Grid > m_grid</div><div class="ttdoc">grid used by this component</div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00156">Component.hh:156</a></div></div>
<div class="ttc" id="aclasspism_1_1Component_a7737874c03a58a03498a33dc464d2ee9_html_a7737874c03a58a03498a33dc464d2ee9"><div class="ttname"><a href="classpism_1_1Component_a7737874c03a58a03498a33dc464d2ee9.html#a7737874c03a58a03498a33dc464d2ee9">pism::Component::regrid</a></div><div class="ttdeci">void regrid(const std::string &module_name, array::Array &variable, RegriddingFlag flag=NO_REGRID_WITHOUT_REGRID_VARS)</div><div class="ttdef"><b>Definition:</b> <a href="Component_8cc_source.html#l00159">Component.cc:159</a></div></div>
<div class="ttc" id="aclasspism_1_1Component_html"><div class="ttname"><a href="classpism_1_1Component.html">pism::Component</a></div><div class="ttdoc">A class defining a common interface for most PISM sub-models.</div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00118">Component.hh:118</a></div></div>
<div class="ttc" id="aclasspism_1_1Config_a4dc1634c0eac358eb86303633024f810_html_a4dc1634c0eac358eb86303633024f810"><div class="ttname"><a href="classpism_1_1Config_a4dc1634c0eac358eb86303633024f810.html#a4dc1634c0eac358eb86303633024f810">pism::Config::ConstPtr</a></div><div class="ttdeci">std::shared_ptr< const Config > ConstPtr</div><div class="ttdef"><b>Definition:</b> <a href="ConfigInterface_8hh_source.html#l00056">ConfigInterface.hh:56</a></div></div>
<div class="ttc" id="aclasspism_1_1Diagnostic_a2648c1bc92c5e333ecad30e9a5687ea9_html_a2648c1bc92c5e333ecad30e9a5687ea9"><div class="ttname"><a href="classpism_1_1Diagnostic_a2648c1bc92c5e333ecad30e9a5687ea9.html#a2648c1bc92c5e333ecad30e9a5687ea9">pism::Diagnostic::wrap</a></div><div class="ttdeci">static Ptr wrap(const T &input)</div><div class="ttdef"><b>Definition:</b> <a href="Diagnostic_8hh_source.html#l00160">Diagnostic.hh:160</a></div></div>
<div class="ttc" id="aclasspism_1_1File_html"><div class="ttname"><a href="classpism_1_1File.html">pism::File</a></div><div class="ttdoc">High-level PISM I/O class.</div><div class="ttdef"><b>Definition:</b> <a href="File_8hh_source.html#l00055">File.hh:56</a></div></div>
<div class="ttc" id="aclasspism_1_1VariableMetadata_a2b7791d4794fd3deb3838e75b495ce33_html_a2b7791d4794fd3deb3838e75b495ce33"><div class="ttname"><a href="classpism_1_1VariableMetadata_a2b7791d4794fd3deb3838e75b495ce33.html#a2b7791d4794fd3deb3838e75b495ce33">pism::VariableMetadata::standard_name</a></div><div class="ttdeci">VariableMetadata & standard_name(const std::string &input)</div><div class="ttdef"><b>Definition:</b> <a href="VariableMetadata_8hh_source.html#l00119">VariableMetadata.hh:119</a></div></div>
<div class="ttc" id="aclasspism_1_1VariableMetadata_a5e378cf7077ab00a808ef446a79dc34d_html_a5e378cf7077ab00a808ef446a79dc34d"><div class="ttname"><a href="classpism_1_1VariableMetadata_a5e378cf7077ab00a808ef446a79dc34d.html#a5e378cf7077ab00a808ef446a79dc34d">pism::VariableMetadata::long_name</a></div><div class="ttdeci">VariableMetadata & long_name(const std::string &input)</div><div class="ttdef"><b>Definition:</b> <a href="VariableMetadata_8hh_source.html#l00115">VariableMetadata.hh:115</a></div></div>
<div class="ttc" id="aclasspism_1_1VariableMetadata_ae73185be0693a8607b8e0f74558e11e4_html_ae73185be0693a8607b8e0f74558e11e4"><div class="ttname"><a href="classpism_1_1VariableMetadata_ae73185be0693a8607b8e0f74558e11e4.html#ae73185be0693a8607b8e0f74558e11e4">pism::VariableMetadata::units</a></div><div class="ttdeci">VariableMetadata & units(const std::string &input)</div><div class="ttdef"><b>Definition:</b> <a href="VariableMetadata_8hh_source.html#l00123">VariableMetadata.hh:123</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1AccessScope_html"><div class="ttname"><a href="classpism_1_1array_1_1AccessScope.html">pism::array::AccessScope</a></div><div class="ttdoc">Makes sure that we call begin_access() and end_access() for all accessed array::Arrays.</div><div class="ttdef"><b>Definition:</b> <a href="Array_8hh_source.html#l00065">Array.hh:65</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array2D_a7b9a0d8a83d5379f1debdcefce0fffae_html_a7b9a0d8a83d5379f1debdcefce0fffae"><div class="ttname"><a href="classpism_1_1array_1_1Array2D_a7b9a0d8a83d5379f1debdcefce0fffae.html#a7b9a0d8a83d5379f1debdcefce0fffae">pism::array::Array2D::copy_from</a></div><div class="ttdeci">void copy_from(const Array2D< T > &source)</div><div class="ttdef"><b>Definition:</b> <a href="Array2D_8hh_source.html#l00073">Array2D.hh:73</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array2D_af08ea254dfc85146e15571ca7abcf411_html_af08ea254dfc85146e15571ca7abcf411"><div class="ttname"><a href="classpism_1_1array_1_1Array2D_af08ea254dfc85146e15571ca7abcf411.html#af08ea254dfc85146e15571ca7abcf411">pism::array::Array2D::add</a></div><div class="ttdeci">void add(double alpha, const Array2D< T > &x)</div><div class="ttdef"><b>Definition:</b> <a href="Array2D_8hh_source.html#l00065">Array2D.hh:65</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_a0326efd779d857755513901da9a54992_html_a0326efd779d857755513901da9a54992"><div class="ttname"><a href="classpism_1_1array_1_1Array_a0326efd779d857755513901da9a54992.html#a0326efd779d857755513901da9a54992">pism::array::Array::read</a></div><div class="ttdeci">void read(const std::string &filename, unsigned int time)</div><div class="ttdef"><b>Definition:</b> <a href="Array_8cc_source.html#l00809">Array.cc:809</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_a3e1a5859cef073a95e5e0cc5f1cc0fdb_html_a3e1a5859cef073a95e5e0cc5f1cc0fdb"><div class="ttname"><a href="classpism_1_1array_1_1Array_a3e1a5859cef073a95e5e0cc5f1cc0fdb.html#a3e1a5859cef073a95e5e0cc5f1cc0fdb">pism::array::Array::define</a></div><div class="ttdeci">void define(const File &file, io::Type default_type) const</div><div class="ttdoc">Define variables corresponding to an Array in a file opened using file.</div><div class="ttdef"><b>Definition:</b> <a href="Array_8cc_source.html#l00540">Array.cc:540</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_a4cdaeb827d166a076668d2ab86416793_html_a4cdaeb827d166a076668d2ab86416793"><div class="ttname"><a href="classpism_1_1array_1_1Array_a4cdaeb827d166a076668d2ab86416793.html#a4cdaeb827d166a076668d2ab86416793">pism::array::Array::write</a></div><div class="ttdeci">void write(const std::string &filename) const</div><div class="ttdef"><b>Definition:</b> <a href="Array_8cc_source.html#l00800">Array.cc:800</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_a7b700739a7f5845c95fa33375a497901_html_a7b700739a7f5845c95fa33375a497901"><div class="ttname"><a href="classpism_1_1array_1_1Array_a7b700739a7f5845c95fa33375a497901.html#a7b700739a7f5845c95fa33375a497901">pism::array::Array::scale</a></div><div class="ttdeci">void scale(double alpha)</div><div class="ttdoc">Result: v <- v * alpha. Calls VecScale.</div><div class="ttdef"><b>Definition:</b> <a href="Array_8cc_source.html#l00253">Array.cc:253</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_a982fca110a5d7011f681b928b20e3577_html_a982fca110a5d7011f681b928b20e3577"><div class="ttname"><a href="classpism_1_1array_1_1Array_a982fca110a5d7011f681b928b20e3577.html#a982fca110a5d7011f681b928b20e3577">pism::array::Array::grid</a></div><div class="ttdeci">std::shared_ptr< const Grid > grid() const</div><div class="ttdef"><b>Definition:</b> <a href="Array_8cc_source.html#l00132">Array.cc:132</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_aa7de6be7e8f785321df81d9fd6518a16_html_aa7de6be7e8f785321df81d9fd6518a16"><div class="ttname"><a href="classpism_1_1array_1_1Array_aa7de6be7e8f785321df81d9fd6518a16.html#aa7de6be7e8f785321df81d9fd6518a16">pism::array::Array::regrid</a></div><div class="ttdeci">void regrid(const std::string &filename, io::Default default_value)</div><div class="ttdef"><b>Definition:</b> <a href="Array_8cc_source.html#l00814">Array.cc:814</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4_html_af9eece42153cd03bfc8ba237ae5310c4"><div class="ttname"><a href="classpism_1_1array_1_1Array_af9eece42153cd03bfc8ba237ae5310c4.html#af9eece42153cd03bfc8ba237ae5310c4">pism::array::Array::metadata</a></div><div class="ttdeci">SpatialVariableMetadata & metadata(unsigned int N=0)</div><div class="ttdoc">Returns a reference to the SpatialVariableMetadata object containing metadata for the compoment N.</div><div class="ttdef"><b>Definition:</b> <a href="Array_8cc_source.html#l00553">Array.cc:553</a></div></div>
<div class="ttc" id="aclasspism_1_1array_1_1Scalar_html"><div class="ttname"><a href="classpism_1_1array_1_1Scalar.html">pism::array::Scalar</a></div><div class="ttdef"><b>Definition:</b> <a href="Scalar_8hh_source.html#l00031">Scalar.hh:31</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a18e5652bb7916fa9c4cdb5cfdaa5b906_html_a18e5652bb7916fa9c4cdb5cfdaa5b906"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a18e5652bb7916fa9c4cdb5cfdaa5b906.html#a18e5652bb7916fa9c4cdb5cfdaa5b906">pism::bed::BedDef::write_model_state_impl</a></div><div class="ttdeci">virtual void write_model_state_impl(const File &output) const</div><div class="ttdoc">The default (empty implementation).</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00064">BedDef.cc:64</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a1aa2959595826063e459b756abfb73af_html_a1aa2959595826063e459b756abfb73af"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a1aa2959595826063e459b756abfb73af.html#a1aa2959595826063e459b756abfb73af">pism::bed::BedDef::diagnostics_impl</a></div><div class="ttdeci">virtual DiagnosticList diagnostics_impl() const</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00069">BedDef.cc:69</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a432572d80406df7620308bfc1e6506de_html_a432572d80406df7620308bfc1e6506de"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a432572d80406df7620308bfc1e6506de.html#a432572d80406df7620308bfc1e6506de">pism::bed::BedDef::define_model_state_impl</a></div><div class="ttdeci">virtual void define_model_state_impl(const File &output) const</div><div class="ttdoc">The default (empty implementation).</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00059">BedDef.cc:59</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a594a537f262d96b47a7cc527607f092b_html_a594a537f262d96b47a7cc527607f092b"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a594a537f262d96b47a7cc527607f092b.html#a594a537f262d96b47a7cc527607f092b">pism::bed::BedDef::bootstrap_impl</a></div><div class="ttdeci">virtual void bootstrap_impl(const array::Scalar &bed_elevation, const array::Scalar &bed_uplift, const array::Scalar &ice_thickness, const array::Scalar &sea_level_elevation)</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00088">BedDef.cc:88</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a5cb44d4b40e7c254751d3fce3f366c4c_html_a5cb44d4b40e7c254751d3fce3f366c4c"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a5cb44d4b40e7c254751d3fce3f366c4c.html#a5cb44d4b40e7c254751d3fce3f366c4c">pism::bed::BedDef::update_impl</a></div><div class="ttdeci">virtual void update_impl(const array::Scalar &ice_thickness, const array::Scalar &sea_level_elevation, double t, double dt)=0</div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a66ef0bdfce3ede4f98d5bb1889691879_html_a66ef0bdfce3ede4f98d5bb1889691879"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a66ef0bdfce3ede4f98d5bb1889691879.html#a66ef0bdfce3ede4f98d5bb1889691879">pism::bed::BedDef::init</a></div><div class="ttdeci">void init(const InputOptions &opts, const array::Scalar &ice_thickness, const array::Scalar &sea_level_elevation)</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00076">BedDef.cc:76</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a67a44c4008ee6989c1c0ac3ef8276fa4_html_a67a44c4008ee6989c1c0ac3ef8276fa4"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a67a44c4008ee6989c1c0ac3ef8276fa4.html#a67a44c4008ee6989c1c0ac3ef8276fa4">pism::bed::BedDef::m_topg_last</a></div><div class="ttdeci">array::Scalar2 m_topg_last</div><div class="ttdoc">bed elevation at the time of the last update</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8hh_source.html#l00083">BedDef.hh:83</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a753c0498dee5ee7db6b2129a6de6db70_html_a753c0498dee5ee7db6b2129a6de6db70"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a753c0498dee5ee7db6b2129a6de6db70.html#a753c0498dee5ee7db6b2129a6de6db70">pism::bed::BedDef::update</a></div><div class="ttdeci">void update(const array::Scalar &ice_thickness, const array::Scalar &sea_level_elevation, double t, double dt)</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00099">BedDef.cc:99</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a7c744cc807f2de03773ab25475fea2ad_html_a7c744cc807f2de03773ab25475fea2ad"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a7c744cc807f2de03773ab25475fea2ad.html#a7c744cc807f2de03773ab25475fea2ad">pism::bed::BedDef::bootstrap</a></div><div class="ttdeci">void bootstrap(const array::Scalar &bed_elevation, const array::Scalar &bed_uplift, const array::Scalar &ice_thickness, const array::Scalar &sea_level_elevation)</div><div class="ttdoc">Initialize using provided bed elevation and uplift.</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00082">BedDef.cc:82</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc_html_a81f07e00ef5de3b7deec999b4febabcc"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a81f07e00ef5de3b7deec999b4febabcc.html#a81f07e00ef5de3b7deec999b4febabcc">pism::bed::BedDef::m_topg</a></div><div class="ttdeci">array::Scalar2 m_topg</div><div class="ttdoc">current bed elevation</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8hh_source.html#l00080">BedDef.hh:80</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a86f2efe7f454589ff3337cee6a8a85f1_html_a86f2efe7f454589ff3337cee6a8a85f1"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a86f2efe7f454589ff3337cee6a8a85f1.html#a86f2efe7f454589ff3337cee6a8a85f1">pism::bed::BedDef::init_impl</a></div><div class="ttdeci">virtual void init_impl(const InputOptions &opts, const array::Scalar &ice_thickness, const array::Scalar &sea_level_elevation)</div><div class="ttdoc">Initialize from the context (input file and the "variables" database).</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00105">BedDef.cc:105</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a8ed0cb71c8e8b31e37f129ab3f9a37b3_html_a8ed0cb71c8e8b31e37f129ab3f9a37b3"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a8ed0cb71c8e8b31e37f129ab3f9a37b3.html#a8ed0cb71c8e8b31e37f129ab3f9a37b3">pism::bed::BedDef::BedDef</a></div><div class="ttdeci">BedDef(std::shared_ptr< const Grid > g)</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00027">BedDef.cc:27</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_a9fdfd938a24c115b188d1fda6feba751_html_a9fdfd938a24c115b188d1fda6feba751"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_a9fdfd938a24c115b188d1fda6feba751.html#a9fdfd938a24c115b188d1fda6feba751">pism::bed::BedDef::apply_topg_offset</a></div><div class="ttdeci">virtual void apply_topg_offset(const std::string &filename)</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00155">BedDef.cc:155</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a_html_aae163c699051ee20349b893a343d1a2a"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_aae163c699051ee20349b893a343d1a2a.html#aae163c699051ee20349b893a343d1a2a">pism::bed::BedDef::m_uplift</a></div><div class="ttdeci">array::Scalar m_uplift</div><div class="ttdoc">bed uplift rate</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8hh_source.html#l00086">BedDef.hh:86</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_ab864f5da11db7bcae52e2bfe6fe7a8af_html_ab864f5da11db7bcae52e2bfe6fe7a8af"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_ab864f5da11db7bcae52e2bfe6fe7a8af.html#ab864f5da11db7bcae52e2bfe6fe7a8af">pism::bed::BedDef::uplift</a></div><div class="ttdeci">const array::Scalar & uplift() const</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00055">BedDef.cc:55</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_ac6be925d2b8a3a4994d10636df4954b9_html_ac6be925d2b8a3a4994d10636df4954b9"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_ac6be925d2b8a3a4994d10636df4954b9.html#ac6be925d2b8a3a4994d10636df4954b9">pism::bed::BedDef::bed_elevation</a></div><div class="ttdeci">const array::Scalar & bed_elevation() const</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00051">BedDef.cc:51</a></div></div>
<div class="ttc" id="aclasspism_1_1bed_1_1BedDef_af1638a648ee96fa9090d2c828116d2a2_html_af1638a648ee96fa9090d2c828116d2a2"><div class="ttname"><a href="classpism_1_1bed_1_1BedDef_af1638a648ee96fa9090d2c828116d2a2.html#af1638a648ee96fa9090d2c828116d2a2">pism::bed::BedDef::compute_uplift</a></div><div class="ttdeci">void compute_uplift(const array::Scalar &bed, const array::Scalar &bed_last, double dt, array::Scalar &result)</div><div class="ttdoc">Compute bed uplift (dt is in seconds).</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00167">BedDef.cc:167</a></div></div>
<div class="ttc" id="aclasspism_1_1io_1_1Default_a81301b55ee990a23a3b8f8acde39f417_html_a81301b55ee990a23a3b8f8acde39f417"><div class="ttname"><a href="classpism_1_1io_1_1Default_a81301b55ee990a23a3b8f8acde39f417.html#a81301b55ee990a23a3b8f8acde39f417">pism::io::Default::Nil</a></div><div class="ttdeci">static Default Nil()</div><div class="ttdef"><b>Definition:</b> <a href="IO__Flags_8hh_source.html#l00097">IO_Flags.hh:97</a></div></div>
<div class="ttc" id="aclasspism_1_1io_1_1Default_html"><div class="ttname"><a href="classpism_1_1io_1_1Default.html">pism::io::Default</a></div><div class="ttdef"><b>Definition:</b> <a href="IO__Flags_8hh_source.html#l00091">IO_Flags.hh:91</a></div></div>
<div class="ttc" id="anamespacepism_1_1array_a8957d08741c6f48d1e554ac7ea98530a_html_a8957d08741c6f48d1e554ac7ea98530a"><div class="ttname"><a href="namespacepism_1_1array_a8957d08741c6f48d1e554ac7ea98530a.html#a8957d08741c6f48d1e554ac7ea98530a">pism::array::max</a></div><div class="ttdeci">double max(const array::Scalar &input)</div><div class="ttdoc">Finds maximum over all the values in an array::Scalar object. Ignores ghosts.</div><div class="ttdef"><b>Definition:</b> <a href="Scalar_8cc_source.html#l00165">Scalar.cc:165</a></div></div>
<div class="ttc" id="anamespacepism_1_1bed_af59fee6cf94f3938156841623abbafd4_html_af59fee6cf94f3938156841623abbafd4"><div class="ttname"><a href="namespacepism_1_1bed_af59fee6cf94f3938156841623abbafd4.html#af59fee6cf94f3938156841623abbafd4">pism::bed::compute_load</a></div><div class="ttdeci">double compute_load(double bed, double ice_thickness, double sea_level, double ice_density, double ocean_density)</div><div class="ttdef"><b>Definition:</b> <a href="BedDef_8cc_source.html#l00174">BedDef.cc:174</a></div></div>
<div class="ttc" id="anamespacepism_1_1io_a53ffb40793c398e10644fbd2ecda3e77_html_a53ffb40793c398e10644fbd2ecda3e77a6a72c64f82168bec6bf8b648a86648de"><div class="ttname"><a href="namespacepism_1_1io_a53ffb40793c398e10644fbd2ecda3e77.html#a53ffb40793c398e10644fbd2ecda3e77a6a72c64f82168bec6bf8b648a86648de">pism::io::PISM_DOUBLE</a></div><div class="ttdeci">@ PISM_DOUBLE</div><div class="ttdef"><b>Definition:</b> <a href="IO__Flags_8hh_source.html#l00053">IO_Flags.hh:52</a></div></div>
<div class="ttc" id="anamespacepism_a56e80801555b7f36f4dd28941739654a_html_a56e80801555b7f36f4dd28941739654aa260aa6280296d9fffc338c9ecdaba861"><div class="ttname"><a href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa260aa6280296d9fffc338c9ecdaba861">pism::INIT_BOOTSTRAP</a></div><div class="ttdeci">@ INIT_BOOTSTRAP</div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00056">Component.hh:56</a></div></div>
<div class="ttc" id="anamespacepism_a56e80801555b7f36f4dd28941739654a_html_a56e80801555b7f36f4dd28941739654aa5059a278caac36d24acebb622448a8dd"><div class="ttname"><a href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa5059a278caac36d24acebb622448a8dd">pism::INIT_OTHER</a></div><div class="ttdeci">@ INIT_OTHER</div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00056">Component.hh:56</a></div></div>
<div class="ttc" id="anamespacepism_a56e80801555b7f36f4dd28941739654a_html_a56e80801555b7f36f4dd28941739654aa6aff4b43552f00d5cc331453ff4029bc"><div class="ttname"><a href="namespacepism_a56e80801555b7f36f4dd28941739654a.html#a56e80801555b7f36f4dd28941739654aa6aff4b43552f00d5cc331453ff4029bc">pism::INIT_RESTART</a></div><div class="ttdeci">@ INIT_RESTART</div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00056">Component.hh:56</a></div></div>
<div class="ttc" id="anamespacepism_a6154a990ba873c6ca606d8a320c441ac_html_a6154a990ba873c6ca606d8a320c441ac"><div class="ttname"><a href="namespacepism_a6154a990ba873c6ca606d8a320c441ac.html#a6154a990ba873c6ca606d8a320c441ac">pism::DiagnosticList</a></div><div class="ttdeci">std::map< std::string, Diagnostic::Ptr > DiagnosticList</div><div class="ttdef"><b>Definition:</b> <a href="Diagnostic_8hh_source.html#l00125">Diagnostic.hh:125</a></div></div>
<div class="ttc" id="anamespacepism_html"><div class="ttname"><a href="namespacepism.html">pism</a></div><div class="ttdef"><b>Definition:</b> <a href="AgeColumnSystem_8cc_source.html#l00023">AgeColumnSystem.cc:23</a></div></div>
<div class="ttc" id="astructpism_1_1InputOptions_a0fe5db51286e55c31b1575dc9ecc5d70_html_a0fe5db51286e55c31b1575dc9ecc5d70"><div class="ttname"><a href="structpism_1_1InputOptions_a0fe5db51286e55c31b1575dc9ecc5d70.html#a0fe5db51286e55c31b1575dc9ecc5d70">pism::InputOptions::type</a></div><div class="ttdeci">InitializationType type</div><div class="ttdoc">initialization type</div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00061">Component.hh:61</a></div></div>
<div class="ttc" id="astructpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5_html_a2dc298f0e83b951fa1df5eab910639e5"><div class="ttname"><a href="structpism_1_1InputOptions_a2dc298f0e83b951fa1df5eab910639e5.html#a2dc298f0e83b951fa1df5eab910639e5">pism::InputOptions::filename</a></div><div class="ttdeci">std::string filename</div><div class="ttdoc">name of the input file (if applicable)</div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00063">Component.hh:63</a></div></div>
<div class="ttc" id="astructpism_1_1InputOptions_ae33c7fb4ca1317444d959bc3e1514ba4_html_ae33c7fb4ca1317444d959bc3e1514ba4"><div class="ttname"><a href="structpism_1_1InputOptions_ae33c7fb4ca1317444d959bc3e1514ba4.html#ae33c7fb4ca1317444d959bc3e1514ba4">pism::InputOptions::record</a></div><div class="ttdeci">unsigned int record</div><div class="ttdoc">index of the record to re-start from</div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00065">Component.hh:65</a></div></div>
<div class="ttc" id="astructpism_1_1InputOptions_html"><div class="ttname"><a href="structpism_1_1InputOptions.html">pism::InputOptions</a></div><div class="ttdef"><b>Definition:</b> <a href="Component_8hh_source.html#l00058">Component.hh:58</a></div></div>
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