paths.txt

Rosetta Input/Output Paths (order essential)
path is first '/', './',or  '../' to next whitespace, must end with '/'
INPUT PATHS:
pdb1	                        ./
pdb2                            ./
alternate data files            ./
fragments                       ./
structure dssp,ssa (dat,jones)  ./
sequence fasta,dat,jones        ./
constraints                     ./
starting structure              ./
data files                      //www/cgi-bin/ProScan/rosetta2.3/rosetta_database/
OUTPUT PATHS:
movie                           ./
pdb path                        ./
score                           ./
status                          ./
user                            ./
FRAGMENTS: (use '*****' in place of pdb name and chain)
2                                      number of valid fragment files
3                                      frag file 1 size
aa*****03_05.???_v1_3                               name
9                                      frag file 2 size
aa*****09_05.???_v1_3                               name
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CVS information:
$Revision: 20460 $
$Date: 2008-02-18 23:02:35 -0500 (Mon, 18 Feb 2008) $
$Author: possu $
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