diff --git a/README.textile b/README.textile index 4e3ef4a..3a71dbd 100644 --- a/README.textile +++ b/README.textile @@ -2,7 +2,7 @@ .:: SPREAD 2::. =================== *Spatial Phylogenetic Reconstruction of EvolutionAry Dynamics 2* -Version: 2.0.0 alpha, 2015 +Version: 0.0.1, 2015 Authors: Filip Bielejec, Andrew Rambaut, Marc A. Suchard & Philippe 'The Wise' Lemey Homepage: http://rega.kuleuven.be/cev/ecv/software/spread License: LGPL diff --git a/src/app/Spread2App.java b/src/app/Spread2App.java index c29b05c..7ec26a2 100644 --- a/src/app/Spread2App.java +++ b/src/app/Spread2App.java @@ -2,8 +2,6 @@ import java.util.Locale; -import exceptions.ArgumentException; - /** * @author Andrew Rambaut * @author Filip Bielejec diff --git a/src/data/SpreadData.java b/src/data/SpreadData.java index f6273af..d93cbde 100644 --- a/src/data/SpreadData.java +++ b/src/data/SpreadData.java @@ -5,7 +5,6 @@ import data.structure.Layer; import data.structure.Location; -import data.structure.TimeLine; /** * @author Andrew Rambaut @@ -14,13 +13,13 @@ */ public class SpreadData { - private final TimeLine timeLine; +// private final TimeLine timeLine; private final LinkedList locations; private final LinkedList layers; public SpreadData(LinkedList locations, LinkedList layers) { - this.timeLine = null; // TODO +// this.timeLine = null; // TODO this.locations = locations; this.layers = layers; diff --git a/src/renderers/kml/KmlRenderer.java b/src/renderers/kml/KmlRenderer.java index 68c34ea..9739600 100644 --- a/src/renderers/kml/KmlRenderer.java +++ b/src/renderers/kml/KmlRenderer.java @@ -12,12 +12,6 @@ import java.util.Map; import java.util.Map.Entry; -import org.joda.time.DateTime; -import org.joda.time.Duration; -import org.joda.time.Interval; -import org.joda.time.LocalDate; -import org.joda.time.Period; - import kmlframework.kml.AltitudeModeEnum; import kmlframework.kml.Document; import kmlframework.kml.Feature; @@ -31,10 +25,14 @@ import kmlframework.kml.Point; import kmlframework.kml.PolyStyle; import kmlframework.kml.StyleSelector; -import kmlframework.kml.TimePrimitive; import kmlframework.kml.TimeSpan; + +import org.joda.time.DateTime; +import org.joda.time.Duration; +import org.joda.time.Interval; +import org.joda.time.LocalDate; + import parsers.DiscreteColorsParser; -import parsers.TimeParser; import renderers.Renderer; import settings.rendering.KmlRendererSettings; import utils.Trait; @@ -647,10 +645,6 @@ private Feature generateLine( LinkedList coords = getIntermediateCoords(startCoordinate, endCoordinate, sliceCount); - - // TODO time intervals - - String startTime = line.getStartTime(); DateTime startDate = new DateTime(startTime); diff --git a/src/utils/Utils.java b/src/utils/Utils.java index e8ba44a..1be4c25 100644 --- a/src/utils/Utils.java +++ b/src/utils/Utils.java @@ -17,7 +17,6 @@ import jebl.evolution.trees.RootedTree; import data.structure.Coordinate; import exceptions.AnalysisException; -import exceptions.ArgumentException; public class Utils {