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config.yaml
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data_files:
ALDOB: MPRA/Patwardhan_SupplementaryData/trivariate.tab
ECR11: MPRA/Patwardhan_SupplementaryData/trivariate.tab
BCL11A: MPRA/GRCh38_ALL.tsv
F9: MPRA/GRCh38_ALL.tsv
FOXE1: MPRA/GRCh38_ALL.tsv
GP1BA: MPRA/GRCh38_ALL.tsv
HBB: MPRA/GRCh38_ALL.tsv
HBG1: MPRA/GRCh38_ALL.tsv
HNF4A: MPRA/GRCh38_ALL.tsv
IRF4: MPRA/GRCh38_ALL.tsv
IRF6: MPRA/GRCh38_ALL.tsv
LDLR: MPRA/GRCh38_ALL.tsv
LDLR.2: MPRA/GRCh38_ALL.tsv
MSMB: MPRA/GRCh38_ALL.tsv
MYCrs11986220: MPRA/GRCh38_ALL.tsv
MYCrs6983267: MPRA/GRCh38_ALL.tsv
PKLR-24h: MPRA/GRCh38_ALL.tsv
PKLR-48h: MPRA/GRCh38_ALL.tsv
RET: MPRA/GRCh38_ALL.tsv
SORT1: MPRA/GRCh38_ALL.tsv
SORT1.2: MPRA/GRCh38_ALL.tsv
SORT1-flip: MPRA/GRCh38_ALL.tsv
TCF7L2: MPRA/GRCh38_ALL.tsv
TERT-GAa: MPRA/GRCh38_ALL.tsv
TERT-GBM: MPRA/GRCh38_ALL.tsv
TERT-GSc: MPRA/GRCh38_ALL.tsv
TERT-HEK: MPRA/GRCh38_ALL.tsv
UC88: MPRA/GRCh38_ALL.tsv
ZFAND3: MPRA/GRCh38_ALL.tsv
ZRSh-13: MPRA/GRCh38_ALL.tsv
ZRSh-13h2: MPRA/GRCh38_ALL.tsv
promoters : [
TERT-GAa, TERT-GBM, TERT-GSc, TERT-HEK, LDLR, LDLR.2, HBB, HBG1, HNF4A,
MSMB, PKLR-24h, PKLR-48h, F9, FOXE1, GP1BB
]
enhancers: [
SORT1, SORT1.2, SORT1-flip ZRSh-13, ZRSh-13h2, BCL11A, IRF4, IRF6,
MYCrs6983267, MYCrs11986220, RET, TCF7L2, ZFAND3, UC88
]