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Can't download GRCh38.99 database #558

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sunrain1234 opened this issue Aug 27, 2024 · 1 comment
Open

Can't download GRCh38.99 database #558

sunrain1234 opened this issue Aug 27, 2024 · 1 comment

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@sunrain1234
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Describe the bug
A clear and concise description of what the bug is.
I cannot download GRCh38 database using snpEff.

To Reproduce

  1. SnpEff version: v5.1
  2. Genome version: GRCh38
  3. SnpEff full command line: java -Xmx4g -jar snpEff.jar download -c snpEff.config -v GRCh38.99
  4. Output / Error message: Please include a full VCF line output

00:00:00 SnpEff version SnpEff 5.1 (build 2022-01-21 06:23), by Pablo Cingolani
00:00:00 Command: 'download'
00:00:00 Reading configuration file 'snpEff.config'. Genome: 'GRCh38.99'
00:00:00 Reading config file: /home/u41546/software/snpEff/snpEff.config
00:00:01 done
00:00:01 Downloading database for 'GRCh38.99'
00:00:01 Downloading from 'https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_GRCh38.99.zip' to local file '/tmp/snpEff_v5_1_GRCh38.99.zip'
00:00:01 Connecting to https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_GRCh38.99.zip
00:00:01 Connecting to https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_GRCh38.99.zip, using proxy: false
00:00:01 ERROR while connecting to https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_GRCh38.99.zip
00:00:01 Downloading from 'https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_GRCh38.99.zip' to local file '/tmp/snpEff_v5_0_GRCh38.99.zip'
00:00:01 Connecting to https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_GRCh38.99.zip
00:00:01 Connecting to https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_GRCh38.99.zip, using proxy: false
00:00:01 ERROR while connecting to https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_GRCh38.99.zip
FATAL ERROR: Failed to download database from [https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_GRCh38.99.zip, https://snpeff.blob.core.windows.net/databases/v5_0/snpEff_v5_0_GRCh38.99.zip]

Expected behavior
A clear and concise description of what you expected to happen (show program's output)

Data
Sample data. No need to add the full genomic dataset, but a few input lines enough to reproduce the conditions.
WARNING: Always attach the data files such as VCF lines.

Additional context
Add any other context about the problem here.

@jgarces02
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jgarces02 commented Jan 11, 2025

Hi, did you solve this?

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