Merge CLI flags with flags found in config file. #232
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I believe the desired behavior is to merge these flags so that users can specify both CLI flags and a config file simultaneously. As it stands, when a config file is specified, it's flags will replace (and erase) any flags passed through CLI.
Note, I had to upgrade Typescript by a few minor versions because I was getting a TS build error
Cannot find name 'Omit'.
, and I saw that TS 3.0 didn't support it. So I bumped TS to 3.5 and everything seemed to be working. We'll see what travis says.Fixes #150.