PLEASE HELP!! Unable to compile with gcc 11.4.0

[princesswinnie1122]

Hello, I'm installing ADIOS2 for LAMMPS...but kept on failing the installation process.
Below are the details. Please let me know if I missing anything! Thanks a lot!

• The compiler I use (source ~/.bashrc)

  gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
  Copyright (C) 2021 Free Software Foundation, Inc.
  This is free software; see the source for copying conditions.  There is NO
  warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
  

  scteam06@head:~/lammps/build/ADIOS-2.8.0/build$ which mpicc
  /home/scteam06/openmpi/bin/mpicc
  

• Configuration:

  C=mpicc CXX=mpicxx FC=mpifort \
  cmake .. \
  -DMPI_Fortran_COMPILER=mpifort \
  -DCMAKE_Fortran_COMPILER=mpifort \
  -DCMAKE_C_COMPILER=mpicc \
  -DCMAKE_CXX_COMPILER=mpicxx \
  -DCMAKE_CXX_FLAGS="-O3 -fpic" \
  -DADIOS2_USE_MPI=ON \
  -DADIOS2_USE_Endian_Reverse=ON \
  -DADIOS2_USE_Fortran=ON \
  -DADIOS2_RUN_INSTALL_TEST=OFF \
  -DCMAKE_FIND_ROOT_PATH_MODE_LIBRARY=ONLY \
  -DCMAKE_FIND_ROOT_PATH_MODE_INCLUDE=ONLY \
  -DCMAKE_INSTALL_PREFIX=$BUILD/$ADIOS
  

  Result log:
  cmake_configure.log

• Installation (where I'm stuck)

  make -j
  

  Result log:
  make_build.log

• Dependencies I've built (all with openmpi also):
  

• How I set the paths:

  export HDF5_DIR=/home/scteam06/lammps/opt/hdf5-1.8.18
  export PNETCDF_DIR=/home/scteam06/lammps/opt/pnetcdf-1.12.3
  export NETCDF_DIR=/home/scteam06/lammps/opt/netcdf-c-4.8.1
  export NETCDF_FORTRAN_DIR=/home/scteam06/lammps/opt/netcdf-fortran-4.6.1
  
  export PATH=$HDF5_DIR/bin:$PNETCDF_DIR/bin:$NETCDF_DIR/bin:$PATH
  export LD_LIBRARY_PATH=$HDF5_DIR/lib:$PNETCDF_DIR/lib:$NETCDF_DIR/lib:$LD_LIBRARY_PATH
  export C_INCLUDE_PATH=$HDF5_DIR/include:$PNETCDF_DIR/include:$NETCDF_DIR/include:$C_INCLUDE_PATH
  export CPLUS_INCLUDE_PATH=$HDF5_DIR/include:$PNETCDF_DIR/include:$NETCDF_DIR/include:$CPLUS_INCLUDE_PATH
  export LIBRARY_PATH=$HDF5_DIR/lib:$PNETCDF_DIR/lib:$NETCDF_DIR/lib:$LIBRARY_PATH
  

[vicentebolea]

Adios 2.8 is now unmaintained and unsupported, is it possible to try adios 2.10 or 2.9?

C=mpicc CXX=mpicxx FC=mpifort
cmake ..
-DMPI_Fortran_COMPILER=mpifort
-DCMAKE_Fortran_COMPILER=mpifort
-DCMAKE_C_COMPILER=mpicc
-DCMAKE_CXX_COMPILER=mpicxx
-DCMAKE_CXX_FLAGS="-O3 -fpic"
-DADIOS2_USE_MPI=ON
-DADIOS2_USE_Endian_Reverse=ON
-DADIOS2_USE_Fortran=ON
-DADIOS2_RUN_INSTALL_TEST=OFF
-DCMAKE_FIND_ROOT_PATH_MODE_LIBRARY=ONLY
-DCMAKE_FIND_ROOT_PATH_MODE_INCLUDE=ONLY
-DCMAKE_INSTALL_PREFIX=$BUILD/$ADIOS

You can probably let go most of these options and remain only:

-DADIOS2_USE_MPI=ON \
-DADIOS2_USE_Endian_Reverse=ON \
-DADIOS2_USE_Fortran=ON \
-DADIOS2_RUN_INSTALL_TEST=OFF \
-DCMAKE_INSTALL_PREFIX=$BUILD/$ADIOS

Also you should only need to set the _DIR vars for find_package.

Also Gcc 11.4.0 is tricky, another version might help. If you just need adios2 installed you can use Spack to install it.