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    • Python
      MIT License
      011878Updated Nov 1, 2024Nov 1, 2024
    • DeepEM

      Public
      Deep Learning for EM Connectomics
      Python
      MIT License
      11003Updated Nov 1, 2024Nov 1, 2024
    • Company webpage
      HTML
      0000Updated Oct 11, 2024Oct 11, 2024
    • Shell
      MIT License
      6000Updated Sep 17, 2024Sep 17, 2024
    • Synaptor

      Public
      Processing voxelwise outputs for Connectomics
      Python
      Other
      5000Updated Aug 27, 2024Aug 27, 2024
    • Augmentor

      Public
      Data augmentation for training 3D convolutional nets
      Jupyter Notebook
      GNU General Public License v3.0
      7000Updated May 24, 2024May 24, 2024
    • waterz

      Public
      Simple watershed and agglomeration library for affinity graphs.
      C++
      20000Updated May 6, 2024May 6, 2024
    • abiss

      Public
      Affinity based image segmentation system
      C++
      GNU General Public License v3.0
      1000Updated Apr 25, 2024Apr 25, 2024
    • lsd

      Public
      🌈
      Python
      MIT License
      29000Updated Apr 22, 2024Apr 22, 2024
    • A simple wrapper around some kombu functionality
      Python
      0010Updated Apr 14, 2024Apr 14, 2024
    • seuron

      Public
      Python
      MIT License
      6010Updated Mar 7, 2024Mar 7, 2024
    • Multiplatform 3D numpy image browser based viewer with voxel painting.
      JavaScript
      GNU Lesser General Public License v2.1
      1000Updated Feb 21, 2024Feb 21, 2024
    • Visualize, share and annotate your large 3D images online
      TypeScript
      GNU Affero General Public License v3.0
      23000Updated Jan 30, 2024Jan 30, 2024
    • Some basic utilities to standardize use of provenance files
      Python
      Apache License 2.0
      0001Updated Dec 27, 2023Dec 27, 2023
    • rigidity

      Public
      Python
      0000Updated Dec 12, 2023Dec 12, 2023
    • chunkflow

      Public
      Compose chunk operators to create pipeline for distributed computation
      Python
      Apache License 2.0
      8000Updated Nov 5, 2023Nov 5, 2023
    • Chunked graph structure used for human proof-reading in Python
      Python
      Mozilla Public License 2.0
      10000Updated Sep 21, 2023Sep 21, 2023
    • A specification that python filesystems should adhere to.
      Python
      BSD 3-Clause "New" or "Revised" License
      359000Updated Aug 9, 2023Aug 9, 2023
    • igneous

      Public
      Python cloud pipeline for Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Remapping, and more.
      Python
      GNU General Public License v3.0
      17010Updated Jun 30, 2023Jun 30, 2023
    • WebGL-based viewer for volumetric data
      TypeScript
      Apache License 2.0
      295000Updated Jun 16, 2023Jun 16, 2023
    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      Python
      MIT License
      55000Updated Jun 8, 2023Jun 8, 2023
    • Library for reading and writing large multi-dimensional arrays.
      C++
      Other
      120000Updated Mar 23, 2023Mar 23, 2023
    • Some happy little volumes
      Python
      Apache License 2.0
      0000Updated Mar 22, 2023Mar 22, 2023
    • DataProvider for Python3
      Jupyter Notebook
      MIT License
      5000Updated Mar 21, 2023Mar 21, 2023
    • Go
      0000Updated Mar 6, 2023Mar 6, 2023
    • Smarty
      2110Updated Mar 5, 2023Mar 5, 2023
    • samwise

      Public
      Tools for running interruptible jobs in containers
      Python
      0010Updated Feb 28, 2023Feb 28, 2023
    • Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.
      Python
      BSD 3-Clause "New" or "Revised" License
      8000Updated Feb 9, 2023Feb 9, 2023
    • Read and write Neuroglancer datasets programmatically.
      Python
      BSD 3-Clause "New" or "Revised" License
      47000Updated Feb 3, 2023Feb 3, 2023
    • corgie

      Public
      Command line tool for registration of very large 3D volumes.
      Python
      Apache License 2.0
      3011Updated Jan 27, 2023Jan 27, 2023