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    • cytolib

      Public
      c++ library for representing and interacting the gated cytometry data structure
      C++
      GNU Affero General Public License v3.0
      1112100Updated Dec 24, 2024Dec 24, 2024
    • openCyto

      Public
      A package that provides data analysis pipeline for flow cytometry.
      R
      GNU Affero General Public License v3.0
      2977612Updated Nov 7, 2024Nov 7, 2024
    • flowCore

      Public
      Core flow cytometry infrastructure
      R
      2544351Updated Aug 22, 2024Aug 22, 2024
    • MIMOSA2

      Public
      Baseline Adjusted Positivity Calls for Intracellular Cytokine Staining Data
      R
      2000Updated Aug 15, 2024Aug 15, 2024
    • flowWorkspace
      R
      GNU Affero General Public License v3.0
      2145481Updated Mar 16, 2024Mar 16, 2024
    • ggcyto

      Public
      Visualize Cytometry data with ggplot2
      HTML
      MIT License
      1356210Updated Mar 2, 2024Mar 2, 2024
    • CytoML

      Public
      A GatingML Interface for Cross Platform Cytometry Data Sharing
      HTML
      GNU Affero General Public License v3.0
      1429510Updated Jan 17, 2024Jan 17, 2024
    • flowClust

      Public
      Bayesian flowClust
      R
      8990Updated Jan 15, 2024Jan 15, 2024
    • cytoUtils

      Public
      Helper tools for cytometry
      C++
      1210Updated Dec 19, 2023Dec 19, 2023
    • An R Interface to the ImmuneSpace database portal
      R
      112401Updated Nov 28, 2023Nov 28, 2023
    • MAST

      Public
      Tools and methods for analysis of single cell assay data in R
      R
      57228341Updated Sep 27, 2023Sep 27, 2023
    • FAUST

      Public
      Full annotation using shape-constrained trees
      C++
      GNU General Public License v3.0
      52547Updated Sep 15, 2023Sep 15, 2023
    • flowStats

      Public
      flowStats: algorithms for flow cytometry data analysis using BioConductor tools
      R
      1013181Updated Jul 19, 2023Jul 19, 2023
    • bundled Protocol buffers library as an R package
      R
      Other
      3360Updated Jul 10, 2023Jul 10, 2023
    • cytoqc

      Public
      A Quality Control tool for cytometry
      R
      Other
      3651Updated Feb 8, 2023Feb 8, 2023
    • LabKey Modules for ImmuneSpace
      JavaScript
      Artistic License 2.0
      5500Updated Jan 25, 2023Jan 25, 2023
    • UITesting

      Public
      ImmuneSpace UI Testing
      R
      2200Updated Dec 14, 2022Dec 14, 2022
    • Utilities for processing and analyzing HIPC gene expression data in ImmuneSpace
      R
      1100Updated Dec 14, 2022Dec 14, 2022
    • Tools and functions for generating useful artifacts for ImmuneSpace Reports and APIs
      R
      1000Updated Dec 14, 2022Dec 14, 2022
    • Utility Package for ImmuneSpace Maintenance
      R
      0000Updated Dec 13, 2022Dec 13, 2022
    • Analyte Explorer Pre-processing Scripts
      R
      GNU General Public License v3.0
      0000Updated Dec 13, 2022Dec 13, 2022
    • HIPC ImmuneSignatures
      HTML
      4120Updated Dec 7, 2022Dec 7, 2022
    • HIPC ImmuneSignatures2
      R
      1100Updated Dec 5, 2022Dec 5, 2022
    • R interface to generate leukocyte cell classifications from cell surface markers using the decision tree from Maecker et al. (2012)
      Haskell
      GNU Lesser General Public License v3.0
      0000Updated Oct 5, 2022Oct 5, 2022
    • ImmPortR

      Public
      R wrapper around the ImmPort API and its download tool
      R
      GNU General Public License v3.0
      0100Updated Sep 1, 2022Sep 1, 2022
    • flowViz

      Public
      Visualization for flow cytometry
      R
      0930Updated Aug 17, 2022Aug 17, 2022
    • ncdfFlow

      Public
      A package that provides ncdf based storage for flow cytometry data.
      R
      7231Updated Jul 1, 2022Jul 1, 2022
    • COMPASS

      Public
      Combinatorial Polyfunctionality Analysis of Single Cells
      R
      116152Updated Mar 22, 2022Mar 22, 2022
    • HTML
      0100Updated Mar 18, 2022Mar 18, 2022
    • Processing workflow for COVID-19 single cell data
      R
      41730Updated Dec 23, 2021Dec 23, 2021