Skip to content

@CGATOxford CGAT

Change the repository type filter

All

    Repositories list

    18 repositories

    • UMI-tools

      Public
      Tools for handling Unique Molecular Identifiers in NGS data sets
      Python
      •
      MIT License
      •190•487•14•3•Updated Oct 16, 2024Oct 16, 2024

    • UMI-tools_pipelines

      Public
      Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication
      Jupyter Notebook
      •5•10•1•0•Updated Jun 13, 2022Jun 13, 2022

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.3k•0•0•0•Updated Nov 1, 2019Nov 1, 2019

    • dashboard

      Public
      Dashboard to monitor projects and software development within the CGAT group (www.cgat.org)
      JavaScript
      •
      MIT License
      •59•4•0•0•Updated Nov 19, 2018Nov 19, 2018

    • cgat

      Public
      Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •66•124•6•0•Updated Nov 8, 2018Nov 8, 2018

    • CGATCore

      Public
      Further development of the CGATCore has moved to a new repository. Please see
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Nov 8, 2018Nov 8, 2018

    • CGATPipelines

      Public
      Collection of CGAT NGS Pipelines
      Python
      •
      MIT License
      •18•43•8•1•Updated Nov 8, 2018Nov 8, 2018

    • Notebooks

      Public
      ipython Notebooks
      Jupyter Notebook
      •0•0•0•0•Updated Oct 9, 2018Oct 9, 2018

    • CGATTests

      Public
      Test scripts and configuration for Jenkins CI testing of workflows
      Python
      •
      MIT License
      •1•1•0•0•Updated Jun 8, 2018Jun 8, 2018

    • DanQ_tensorflow

      Public
      tensorflow adaptation of DanQ
      Jupyter Notebook
      •0•2•1•0•Updated Dec 12, 2017Dec 12, 2017

    • python-hpc

      Public
      Fork of the training material for the course: "Python for HPC" originally created by http://www.archer.ac.uk/ and adapted by http://www.arc.ox.ac.uk/
      Jupyter Notebook
      •1•2•0•0•Updated Dec 4, 2017Dec 4, 2017

    • genserv-zope

      Public
      Scripts for building the genserv web server
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2017Apr 10, 2017

    • Pipeline_iCLIP

      Public
      iCLIP analysis pipeline created for project 028
      Python
      •1•0•0•0•Updated Nov 3, 2016Nov 3, 2016

    • conda-recipes

      Public
      build and test recipes for conda
      Shell
      •
      Other
      •374•0•0•0•Updated May 13, 2016May 13, 2016

    • proj029

      Public
      Scripts for proj029
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Mar 9, 2016Mar 9, 2016

    • Optic

      Public
      Comparative genomics code for Optic, Gpipe and other projects.
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 22, 2015Sep 22, 2015

    • CGATViewer

      Public
      A script to display genomic data
      Python
      •
      Other
      •1•0•5•0•Updated Apr 16, 2015Apr 16, 2015

    • scholar.py

      Public
      A parser for Google Scholar, written in Python
      Python
      •777•1•0•0•Updated Jan 9, 2015Jan 9, 2015