test.yaml

# name: Test

# on:
#   push:
#     branches: [ main ]
#   pull_request:

# jobs:
#   build:
#     uses: openproblems-bio/actions/.github/workflows/test.yml@main


name: test

on:
  pull_request:
  push:
    branches:
      - main

jobs:

  # phase 1
  list:
    env:
      s3_bucket: s3://openproblems-data/resources_test/grn/
    runs-on: ubuntu-latest

    outputs:
      matrix: ${{ steps.set_matrix.outputs.matrix }}
      cache_key: ${{ steps.cache.outputs.cache_key }}

    steps:
    - uses: actions/checkout@v4
      with:
        fetch-depth: 0 

    - uses: viash-io/viash-actions/setup@v6

    - uses: viash-io/viash-actions/project/sync-and-cache-s3@v6
      id: cache
      with:
        s3_bucket: $s3_bucket
        dest_path: resources
        cache_key_prefix: resources__

    - id: ns_list
      uses: viash-io/viash-actions/ns-list@v6
      with:
        platform: docker
        format: json

    - id: ns_list_filtered
      uses: viash-io/viash-actions/project/detect-changed-components@v6
      with:
        input_file: "${{ steps.ns_list.outputs.output_file }}"

    - id: set_matrix
      run: |
        echo "matrix=$(jq -c '[ .[] | 
          { 
            "name": (.functionality.namespace + "/" + .functionality.name),
            "config": .info.config
          }
        ]' ${{ steps.ns_list_filtered.outputs.output_file }} )" >> $GITHUB_OUTPUT

  # phase 2
  viash_test:
    needs: list
    if: ${{ needs.list.outputs.matrix != '[]' && needs.list.outputs.matrix != '' }}
    runs-on: ubuntu-latest

    strategy:
      fail-fast: false
      matrix:
        component: ${{ fromJson(needs.list.outputs.matrix) }}

    steps:
    # Remove unnecessary files to free up space. Otherwise, we get 'no space left on device.'
    - uses: data-intuitive/reclaim-the-bytes@v2
    
    - uses: actions/checkout@v4

    - uses: viash-io/viash-actions/setup@v6

    # use cache
    - name: Cache resources data
      uses: actions/cache@v4
      timeout-minutes: 10
      with:
        path: resources
        key: ${{ needs.list.outputs.cache_key }}

    - name: Run test
      timeout-minutes: 30
      run: |
        VIASH_TEMP=$RUNNER_TEMP/viash viash test \
          "${{ matrix.component.config }}" \
          --cpus 2 \
          --memory "5gb"