conda-environment.yaml

channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - _ipython_minor_entry_point=8.7.0=h0c17e10_0
  - _r-mutex=1.0.1=anacondar_1
  - anyio=3.6.2=pyhd8ed1ab_0
  - appnope=0.1.3=pyhd8ed1ab_0
  - argcomplete=1.12.3=pyhd8ed1ab_0
  - argon2-cffi=21.3.0=pyhd8ed1ab_0
  - argon2-cffi-bindings=21.2.0=py311h5547dcb_3
  - asttokens=2.2.1=pyhd8ed1ab_0
  - attrs=22.1.0=pyh71513ae_1
  - backcall=0.2.0=pyh9f0ad1d_0
  - backports=1.0=pyhd8ed1ab_3
  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
  - beautifulsoup4=4.11.1=pyha770c72_0
  - bioconductor-annotate=1.76.0=r42hdfd78af_0
  - bioconductor-annotationdbi=1.60.0=r42hdfd78af_0
  - bioconductor-beachmat=2.14.0=r42hb890f52_0
  - bioconductor-biobase=2.58.0=r42h3be46a4_0
  - bioconductor-biocfilecache=2.6.0=r42hdfd78af_0
  - bioconductor-biocgenerics=0.44.0=r42hdfd78af_0
  - bioconductor-biocparallel=1.32.5=r42hb890f52_0
  - bioconductor-biocsingular=1.14.0=r42hb890f52_0
  - bioconductor-biomart=2.54.0=r42hdfd78af_0
  - bioconductor-biostrings=2.66.0=r42h3be46a4_0
  - bioconductor-complexheatmap=2.14.0=r42hdfd78af_0
  - bioconductor-cytolib=2.10.0=r42hb890f52_0
  - bioconductor-data-packages=20221112=hdfd78af_0
  - bioconductor-delayedarray=0.24.0=r42h4c50009_1
  - bioconductor-delayedmatrixstats=1.20.0=r42hdfd78af_0
  - bioconductor-deseq2=1.38.0=r42hc0ef7c4_1
  - bioconductor-edger=3.40.0=r42hb890f52_0
  - bioconductor-flowcore=2.10.0=r42hb890f52_0
  - bioconductor-genefilter=1.80.0=r42h238a2e4_0
  - bioconductor-geneplotter=1.76.0=r42hdfd78af_0
  - bioconductor-genomeinfodb=1.34.1=r42hdfd78af_0
  - bioconductor-genomeinfodbdata=1.2.9=r42hdfd78af_0
  - bioconductor-genomicranges=1.50.0=r42h4c50009_1
  - bioconductor-graph=1.76.0=r42h4c50009_1
  - bioconductor-gseabase=1.60.0=r42hdfd78af_0
  - bioconductor-gsva=1.46.0=r42h4c50009_1
  - bioconductor-hdf5array=1.26.0=r42h4bb2b61_2
  - bioconductor-iranges=2.32.0=r42h3be46a4_0
  - bioconductor-keggrest=1.38.0=r42hdfd78af_0
  - bioconductor-limma=3.54.0=r42h3be46a4_0
  - bioconductor-matrixgenerics=1.10.0=r42hdfd78af_0
  - bioconductor-rhdf5=2.42.0=r42hb890f52_0
  - bioconductor-rhdf5filters=1.10.0=r42hb890f52_0
  - bioconductor-rhdf5lib=1.20.0=r42h3be46a4_0
  - bioconductor-rprotobuflib=2.10.0=r42hb890f52_0
  - bioconductor-s4vectors=0.36.0=r42h3be46a4_0
  - bioconductor-scaledmatrix=1.6.0=r42hdfd78af_0
  - bioconductor-singlecellexperiment=1.20.0=r42hdfd78af_0
  - bioconductor-singscore=1.18.0=r42hdfd78af_0
  - bioconductor-sparsematrixstats=1.10.0=r42hb890f52_0
  - bioconductor-summarizedexperiment=1.28.0=r42hdfd78af_0
  - bioconductor-xvector=0.38.0=r42h3be46a4_0
  - bioconductor-zlibbioc=1.44.0=r42h3be46a4_0
  - bleach=5.0.1=pyhd8ed1ab_0
  - brotli=1.0.9=hb7f2c08_9
  - brotli-bin=1.0.9=hb7f2c08_9
  - brotli-python=1.0.9=py311h814d153_9
  - bwidget=1.9.14=h694c41f_1
  - bzip2=1.0.8=h0d85af4_4
  - c-ares=1.18.1=h0d85af4_0
  - ca-certificates=2024.2.2=h8857fd0_0
  - cairo=1.16.0=h904041c_1014
  - cctools_osx-64=973.0.1=hcc6d90d_11
  - certifi=2024.2.2=pyhd8ed1ab_0
  - cffi=1.15.1=py311ha86e640_3
  - charset-normalizer=3.2.0=pyhd8ed1ab_0
  - clang=14.0.6=h694c41f_0
  - clang-14=14.0.6=default_h55ffa42_0
  - clang_osx-64=14.0.6=h3113cd8_4
  - clangxx=14.0.6=default_h55ffa42_0
  - clangxx_osx-64=14.0.6=h6f97653_4
  - comm=0.1.2=pyhd8ed1ab_0
  - compiler-rt=14.0.6=h613da45_0
  - compiler-rt_osx-64=14.0.6=hab78ec2_0
  - contourpy=1.1.0=py311h5fe6e05_0
  - curl=7.87.0=h6df9250_0
  - cycler=0.11.0=pyhd8ed1ab_0
  - dart-sass=1.58.3=h694c41f_1
  - debugpy=1.6.4=py311h814d153_0
  - decorator=5.1.1=pyhd8ed1ab_0
  - defusedxml=0.7.1=pyhd8ed1ab_0
  - deno=1.28.2=he996c65_0
  - deno-dom=0.1.35=h08cba0f_1
  - entrypoints=0.4=pyhd8ed1ab_0
  - esbuild=0.19.2=h694c41f_0
  - executing=1.2.0=pyhd8ed1ab_0
  - expat=2.5.0=hf0c8a7f_0
  - flit-core=3.8.0=pyhd8ed1ab_0
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  - font-ttf-inconsolata=3.000=h77eed37_0
  - font-ttf-source-code-pro=2.038=h77eed37_0
  - font-ttf-ubuntu=0.83=hab24e00_0
  - fontconfig=2.14.1=h5bb23bf_0
  - fonts-conda-ecosystem=1=0
  - fonts-conda-forge=1=0
  - fonttools=4.42.1=py311h2725bcf_0
  - freetype=2.12.1=h3f81eb7_1
  - fribidi=1.0.10=hbcb3906_0
  - geos=3.11.1=hf0c8a7f_0
  - gettext=0.21.1=h8a4c099_0
  - gfortran_impl_osx-64=11.3.0=h1f927f5_27
  - gfortran_osx-64=11.3.0=h18f7dce_0
  - glib=2.74.1=hbc0c0cd_1
  - glib-tools=2.74.1=hbc0c0cd_1
  - glpk=5.0=h3cb5acd_0
  - gmp=6.2.1=h2e338ed_0
  - graphite2=1.3.13=h2e338ed_1001
  - greenlet=3.0.0=py311hd39e593_1
  - gsl=2.7=h93259b0_0
  - gst-plugins-base=1.21.2=h37e1711_0
  - gstreamer=1.21.2=h1d18e73_0
  - harfbuzz=6.0.0=h08f8713_0
  - icu=70.1=h96cf925_0
  - idna=3.4=pyhd8ed1ab_0
  - importlib-metadata=5.2.0=pyha770c72_0
  - importlib_resources=5.10.1=pyhd8ed1ab_0
  - ipykernel=6.19.3=pyh736e0ef_0
  - ipython=8.7.0=pyhd1c38e8_0
  - ipython_genutils=0.2.0=py_1
  - ipywidgets=8.0.3=pyhd8ed1ab_0
  - isl=0.25=hb486fe8_0
  - jedi=0.18.2=pyhd8ed1ab_0
  - jinja2=3.1.2=pyhd8ed1ab_1
  - jpeg=9e=hac89ed1_2
  - jq=1.6=hc929b4f_1000
  - jsonschema=4.17.3=pyhd8ed1ab_0
  - jupyter=1.0.0=py311h6eed73b_8
  - jupyter_client=7.4.8=pyhd8ed1ab_0
  - jupyter_console=6.4.4=pyhd8ed1ab_0
  - jupyter_core=5.1.0=py311h6eed73b_0
  - jupyter_events=0.4.0=pyhd8ed1ab_0
  - jupyter_server=2.0.1=pyhd8ed1ab_0
  - jupyter_server_terminals=0.4.2=pyhd8ed1ab_0
  - jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
  - jupyterlab_widgets=3.0.4=pyhd8ed1ab_0
  - kiwisolver=1.4.5=py311h5fe6e05_0
  - krb5=1.20.1=h049b76e_0
  - lcms2=2.15=h29502cd_0
  - ld64_osx-64=609=hfd63004_11
  - lerc=4.0.0=hb486fe8_0
  - libblas=3.9.0=16_osx64_openblas
  - libbrotlicommon=1.0.9=hb7f2c08_9
  - libbrotlidec=1.0.9=hb7f2c08_9
  - libbrotlienc=1.0.9=hb7f2c08_9
  - libcblas=3.9.0=16_osx64_openblas
  - libclang=13.0.1=default_he082bbe_0
  - libclang-cpp14=14.0.6=default_h55ffa42_0
  - libclang13=15.0.3=default_hc4b5f92_0
  - libcurl=7.87.0=h6df9250_0
  - libcxx=16.0.6=hd57cbcb_0
  - libdeflate=1.14=hb7f2c08_0
  - libedit=3.1.20191231=h0678c8f_2
  - libev=4.33=haf1e3a3_1
  - libffi=3.4.2=h0d85af4_5
  - libgfortran=5.0.0=11_3_0_h97931a8_27
  - libgfortran-devel_osx-64=11.3.0=h824d247_27
  - libgfortran5=11.3.0=h082f757_27
  - libgit2=1.5.1=h805edec_0
  - libglib=2.74.1=h4c723e1_1
  - libiconv=1.17=hac89ed1_0
  - liblapack=3.9.0=16_osx64_openblas
  - libllvm13=13.0.1=h64f94b2_2
  - libllvm14=14.0.6=h5b596cc_1
  - libllvm15=15.0.7=h7001e86_0
  - libnghttp2=1.51.0=he2ab024_0
  - libogg=1.3.4=h35c211d_1
  - libopenblas=0.3.21=openmp_h429af6e_3
  - libopus=1.3.1=hc929b4f_1
  - libpng=1.6.39=ha978bb4_0
  - libpq=15.2=h3640bf0_0
  - libsodium=1.0.18=hbcb3906_1
  - libsqlite=3.40.0=ha978bb4_0
  - libssh2=1.10.0=h47af595_3
  - libtiff=4.5.0=h6268bbc_0
  - libv8=8.9.83=h20b7c8e_2
  - libvorbis=1.3.7=h046ec9c_0
  - libwebp-base=1.2.4=h775f41a_0
  - libxcb=1.13=h0d85af4_1004
  - libxml2=2.10.3=hb9e07b5_0
  - libxslt=1.1.37=h5d22bc9_0
  - libzlib=1.2.13=hfd90126_4
  - llvm-openmp=15.0.6=h61d9ccf_0
  - llvm-tools=14.0.6=h5b596cc_1
  - lxml=4.9.2=py311h9f2bb26_0
  - make=4.3=h22f3db7_1
  - markupsafe=2.1.1=py311h5547dcb_2
  - matplotlib=3.7.2=py311h6eed73b_0
  - matplotlib-base=3.7.2=py311haff9b01_0
  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
  - mistune=2.0.4=pyhd8ed1ab_0
  - mpc=1.2.1=hbb51d92_0
  - mpfr=4.1.0=h0f52abe_1
  - munkres=1.1.4=pyh9f0ad1d_0
  - mysql-common=8.0.31=hc4b2c72_0
  - mysql-libs=8.0.31=h8658499_0
  - nbclassic=0.4.8=pyhd8ed1ab_0
  - nbclient=0.7.2=pyhd8ed1ab_0
  - nbconvert=7.2.6=pyhd8ed1ab_0
  - nbconvert-core=7.2.6=pyhd8ed1ab_0
  - nbconvert-pandoc=7.2.6=pyhd8ed1ab_0
  - nbformat=5.7.0=pyhd8ed1ab_0
  - ncurses=6.3=h96cf925_1
  - nest-asyncio=1.5.6=pyhd8ed1ab_0
  - nlopt=2.7.1=py311hdcae639_3
  - notebook=6.5.2=pyha770c72_1
  - notebook-shim=0.2.2=pyhd8ed1ab_0
  - npx=0.1.1=pyhd8ed1ab_0
  - nspr=4.35=hea0b92c_0
  - nss=3.78=ha8197d3_0
  - numpy=1.25.2=py311hc44ba51_0
  - oniguruma=6.9.8=hac89ed1_0
  - openjpeg=2.5.0=h13ac156_2
  - openssl=3.1.5=hd75f5a5_0
  - packaging=22.0=pyhd8ed1ab_0
  - pandas=2.1.0=py311hab14417_0
  - pandoc=3.1.1=h9d075a6_0
  - pandocfilters=1.5.0=pyhd8ed1ab_0
  - pango=1.50.12=hbd9bf65_1
  - parso=0.8.3=pyhd8ed1ab_0
  - patsy=0.5.3=pyhd8ed1ab_0
  - pcre2=10.40=h1c4e4bc_0
  - pexpect=4.8.0=pyh1a96a4e_2
  - pickleshare=0.7.5=py_1003
  - pillow=9.4.0=py311h5bae705_1
  - pip=22.3.1=pyhd8ed1ab_0
  - pixman=0.40.0=hbcb3906_0
  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
  - platformdirs=2.6.0=pyhd8ed1ab_0
  - ply=3.11=py_1
  - pooch=1.7.0=pyha770c72_3
  - prometheus_client=0.15.0=pyhd8ed1ab_0
  - prompt-toolkit=3.0.36=pyha770c72_0
  - prompt_toolkit=3.0.36=hd8ed1ab_0
  - psutil=5.9.4=py311h5547dcb_0
  - pthread-stubs=0.4=hc929b4f_1001
  - ptyprocess=0.7.0=pyhd3deb0d_0
  - pure_eval=0.2.2=pyhd8ed1ab_0
  - pycparser=2.21=pyhd8ed1ab_0
  - pygments=2.13.0=pyhd8ed1ab_0
  - pyparsing=3.0.9=pyhd8ed1ab_0
  - pyqt=5.15.7=py311h8771221_2
  - pyqt5-sip=12.11.0=py311h78fa98d_2
  - pyrsistent=0.19.2=py311h5547dcb_0
  - pysocks=1.7.1=pyha2e5f31_6
  - pyteomics=4.6.2=pyh7cba7a3_0
  - python=3.11.0=he7542f4_1_cpython
  - python-dateutil=2.8.2=pyhd8ed1ab_0
  - python-fastjsonschema=2.16.2=pyhd8ed1ab_0
  - python-json-logger=2.0.1=pyh9f0ad1d_0
  - python-tzdata=2023.3=pyhd8ed1ab_0
  - python_abi=3.11=3_cp311
  - pytz=2023.3=pyhd8ed1ab_0
  - pyyaml=6.0=py311h5547dcb_5
  - pyzmq=24.0.1=py311habfacb3_1
  - qt-main=5.15.6=haeff654_5
  - qtconsole=5.4.0=pyhd8ed1ab_0
  - qtconsole-base=5.4.0=pyha770c72_0
  - qtpy=2.3.0=pyhd8ed1ab_0
  - quarto=1.3.450=h694c41f_0
  - r-abind=1.4_5=r42hc72bb7e_1004
  - r-anytime=0.3.9=r42h49197e3_1
  - r-askpass=1.1=r42h815d134_3
  - r-assertthat=0.2.1=r42hc72bb7e_3
  - r-backports=1.4.1=r42h815d134_1
  - r-base=4.2.2=h841e2fe_3
  - r-base64enc=0.1_3=r42h815d134_1005
  - r-beeswarm=0.4.0=r42h815d134_2
  - r-bh=1.81.0_1=r42hc72bb7e_0
  - r-bigd=0.2.0=r42hc72bb7e_0
  - r-bit=4.0.5=r42h815d134_0
  - r-bit64=4.0.5=r42h815d134_1
  - r-bitops=1.0_7=r42h815d134_1
  - r-blob=1.2.3=r42hc72bb7e_1
  - r-boot=1.3_28.1=r42hc72bb7e_0
  - r-brew=1.0_8=r42hc72bb7e_1
  - r-brio=1.1.3=r42h815d134_1
  - r-broom=1.0.2=r42hc72bb7e_0
  - r-broom.helpers=1.12.0=r42hc72bb7e_0
  - r-bslib=0.4.2=r42hc72bb7e_0
  - r-cachem=1.0.6=r42h815d134_1
  - r-callr=3.7.3=r42hc72bb7e_0
  - r-car=3.1_1=r42hc72bb7e_0
  - r-cardata=3.0_5=r42hc72bb7e_1
  - r-caret=6.0_93=r42h815d134_1
  - r-catools=1.18.2=r42h49197e3_1
  - r-cellranger=1.1.0=r42hc72bb7e_1005
  - r-circlize=0.4.15=r42hc72bb7e_2
  - r-class=7.3_20=r42h815d134_1
  - r-cli=3.4.1=r42h49197e3_1
  - r-clipr=0.8.0=r42hc72bb7e_1
  - r-clock=0.6.1=r42h49197e3_1
  - r-clue=0.3_64=r42h6dc245f_1
  - r-cluster=2.1.4=r42h1e4e481_0
  - r-codetools=0.2_18=r42hc72bb7e_1
  - r-collections=0.3.7=r42h815d134_0
  - r-colorspace=2.0_3=r42h815d134_1
  - r-commonmark=1.8.1=r42h815d134_0
  - r-conflicted=1.1.0=r42hc72bb7e_1
  - r-conquer=1.3.1=r42h6fb8f7f_0
  - r-corrplot=0.92=r42hc72bb7e_1
  - r-cowplot=1.1.1=r42hc72bb7e_1
  - r-cpp11=0.4.3=r42hc72bb7e_0
  - r-crayon=1.5.2=r42hc72bb7e_1
  - r-credentials=1.3.2=r42hc72bb7e_1
  - r-crosstalk=1.2.0=r42hc72bb7e_1
  - r-curl=4.3.3=r42h815d134_1
  - r-cyclocomp=1.1.0=r42hc72bb7e_1005
  - r-data.table=1.14.6=r42h557251b_0
  - r-dbi=1.1.3=r42hc72bb7e_1
  - r-dbplyr=2.2.1=r42hc72bb7e_1
  - r-deldir=1.0_6=r42h1e4e481_1
  - r-desc=1.4.2=r42hc72bb7e_1
  - r-devtools=2.4.5=r42hc72bb7e_1
  - r-dials=1.1.0=r42hc72bb7e_1
  - r-dicedesign=1.9=r42h815d134_1
  - r-diffobj=0.3.5=r42h815d134_1
  - r-digest=0.6.31=r42h49197e3_0
  - r-doparallel=1.0.17=r42hc72bb7e_2
  - r-downlit=0.4.2=r42hc72bb7e_1
  - r-dplyr=1.0.10=r42h49197e3_1
  - r-dqrng=0.3.0=r42h49197e3_1
  - r-drc=3.0_1=r42ha770c72_1004
  - r-dt=0.27=r42hc72bb7e_0
  - r-dtplyr=1.2.2=r42hc72bb7e_2
  - r-e1071=1.7_12=r42h49197e3_0
  - r-ellipsis=0.3.2=r42h815d134_1
  - r-emmeans=1.8.3=r42hc72bb7e_0
  - r-estimability=1.4.1=r42hc72bb7e_1
  - r-evaluate=0.19=r42hc72bb7e_0
  - r-fansi=1.0.3=r42h815d134_1
  - r-farver=2.1.1=r42h49197e3_1
  - r-fastmap=1.1.0=r42h49197e3_1
  - r-filelock=1.0.2=r42h815d134_1003
  - r-fitdistrplus=1.1_8=r42hc72bb7e_1
  - r-fnn=1.1.3.1=r42h49197e3_1
  - r-fontawesome=0.4.0=r42hc72bb7e_0
  - r-forcats=0.5.2=r42hc72bb7e_1
  - r-foreach=1.5.2=r42hc72bb7e_1
  - r-foreign=0.8_84=r42h815d134_0
  - r-formatr=1.14=r42hc72bb7e_0
  - r-fs=1.5.2=r42h49197e3_2
  - r-furrr=0.3.1=r42hc72bb7e_1
  - r-futile.logger=1.4.3=r42hc72bb7e_1004
  - r-futile.options=1.0.1=r42hc72bb7e_1003
  - r-future=1.30.0=r42hc72bb7e_0
  - r-future.apply=1.10.0=r42hc72bb7e_0
  - r-gargle=1.2.1=r42hc72bb7e_1
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