CytoTIL15 Manuscript - Analyses and data

Analyses and intermediate data files used for the CytoTIL15 manuscript.

Set up for analyses

The (mini)conda environment that has been used for the analyses is available as a YAML file: conda-environment.yaml.

The analysis notebooks minimally require the environment defined by following packages:

Once the conda enviroment is ready and activated, a standard Jupyter notebook environment is all required to replicate the computational analyses:

$ jupyter notebook

All data required for the analyses is included in the repository.