diff --git a/.github/workflows/auto-pr-ontobot.yml b/.github/workflows/auto-pr-ontobot.yml index dfef4be3a7..a868732955 100644 --- a/.github/workflows/auto-pr-ontobot.yml +++ b/.github/workflows/auto-pr-ontobot.yml @@ -47,7 +47,7 @@ jobs: - name: Install dependencies run: | - pip install ontobot-change-agent==0.3.11 + pip install ontobot-change-agent - name: Run ochange id: ochange @@ -55,7 +55,8 @@ jobs: ochange process-issue ${{ env.resource }} \ -r ${{ steps.gh-script-repo.outputs.result }} \ -n ${{ steps.gh-script-issue.outputs.result }} \ - -g ${{ secrets.GH_TOKEN }} + -g ${{ secrets.GH_TOKEN }} \ + -p UBERON - name: Create Pull Request uses: peter-evans/create-pull-request@v4 diff --git a/.gitignore b/.gitignore index bd2f91d38d..05b083ca9e 100644 --- a/.gitignore +++ b/.gitignore @@ -204,6 +204,7 @@ uberon-base.obo uberon-basic.* uberon-full.* uberon-simple.* +common-anatomy.* patterns/definitions.owl patterns/pattern.owl subsets/*.json diff --git a/docs/uberon-editor-sop.md b/docs/uberon-editor-sop.md index 9cf407f84c..d8669d0c5d 100644 --- a/docs/uberon-editor-sop.md +++ b/docs/uberon-editor-sop.md @@ -74,6 +74,64 @@ Note: `develops from` does not necessarily the subject directly develops from th Sometimes it is useful to define a grouping classes that automatically classify other terms, for example the term "small intestine Peyer's patch" has a logical definition that can be used to automatically classify terms for Peyer's patch in various parts of the small intestine (duodenum, ilium etc). In these case, it is important to use an established pattern (or to extend the established patterns if this is needed). Established patterns are documented in DOSDP templates - see: < add link to templates or to MD doc generated from them> +## Cross-references to the literature +Assertions in textual definitions, evidence provided in comments, and synonyms should be backed up by citing the appropriate literature. + +Citations are made by cross-references, that is by adding `http://www.geneontology.org/formats/oboInOwl#hasDbXref` annotations to the definition, comment, and synonym annotations. Add one such annotation per reference, using the CURIE syntax with well-known prefixes: + +* `PMID:1234567` for a PubMed identifier; +* `doi:xx.yyyy/...` for a DOI; +* `ISBN:...` for a ISBN. + +If the main source for an assertion is a term in another ontology, the short identifier for that term may be used as a cross-reference. For example, `WBbt:0006799` to cross-reference a term in the _C. elegans_ Gross Anatomy Ontology. + +ORCID identifiers may also be used when the only available source for an assertion is an individual researcher. This should be done sparingly. + +**Technical details of adding a cross-reference using Protégé**: + +For CURIEs and ORCIDs: In the "Create Annotation" window, select the annotation property **database_cross_reference**. + +For CURIEs: Enter the CURIE, using the [bioregistry OBO context](https://bioregistry.io/context/obo) prefix ([link to prefixmap](https://github.com/biopragmatics/bioregistry/blob/main/exports/contexts/obo.context.jsonld)), as a Value on the "Literal" tab. Leave Datatype empty. + +In cases where more than one CURIE is available for a resource, either is acceptable, but using the more semantically specific identifier is recommended. For example, when both a PMID and a doi are available for a resource, using the PMID is recommended since it indicates the cross-reference points to a paper, as opposed to a doi which could point to any digital object. + +For ORCIDs: Enter the ORCID as an IRI in the IRI field on the "IRI Editor" tab, for example `https://orcid.org/0000-0002-7356-1779`. + +For URLs: In the "Create Annotation" window, select the annotation property **seeAlso** (`rdfs:seeAlso`). Enter the URL as a literal string with Datatype `xsd:anyURI` selected. +DO NOT use database_cross_reference with a value that is a URL. + +To restate, in all cases above except ORCIDs, the values are entered as literal strings. An ORCID MUST BE entered as an IRI. + +The above instructions apply whether the cross-reference is added to another annotation (e.g., annotating a text defintion or comment) or adding to the overall class (i.e., not an annotation of another annotation). + +## Synonyms + +Extensive addition of synonyms helps “findability” of terms when searching. Synonyms can and should be added liberally. Of note, the intention of the ontology is not meant to record how a synonym is used in all specific sources in which it appears. Rather an editor, after doing due diligence in researching the terms/synonyms, must determine how a term is used at the present moment in the scientific community. + +Guidelines on the type of synonyms: + +1. Use an _exact_ synonym only when the label and the synonym can be used interchangeably without dispute and refer to the same concept. + +Example: the terms “aorta wall”, “aortic wall” and “wall of aorta” all refer to the exact same concept and would be considered exact synonyms. Terms that may refer to other concepts, especially within the biomedical domain, should not be annotated as exact synonyms, including abbreviations. + +2. A synonym that is an abbreviation should be annotated as a _related_ synonym and with property type “abbreviation” (technically: the synonym annotation assertion axiom should itself be annotated with a `http://www.geneontology.org/formats/oboInOwl#hasSynonymType` property with value `http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION`). + +Example: “BA” is a related synonym for both 'basilar artery' and 'bed nucleus of the accessory olfactory tract' at the time of this writing. Additionally, within the biomedical domain, it can also represent 'brachial artery' or 'Bone Age', two other distinct concepts with separate OBO ontology terms. + +3. Exact synonyms should be unique across the ontology. In other words, if class _A_ has synonym “X”, “X” should not be an exact synonym for any other Uberon term. + +4. Be mindful of the “directionality” of the _narrow_ and _broad_ types of synonyms. They qualify the _synonym_, not the original term. + +Example: stating that “trunk wall” is a narrow synonym of 'body wall' means that “trunk wall“ refers to a narrower (i.e., more specific) concept than 'body wall', not the other way around. + +5. The _related_ synonym type should be used for cases where the overlap between the synonym and the term label may be unclear, disputable or not true in all scenarios or contexts, but you want the term to be findable when searching. This includes abbreviations, which should be annotated as _related_ synonyms with synonym type “abbreviation” (see point 1 above). + +6. If a synonym includes a mix of abbreviations and words, the annotation property 'has related synonym' with has_synonym_type "abbreviation" should still be used unless there is enough context within the synonym itself to make it clear that the synonym refers only to the concept being annotated. + +Example: “DG granule cell layer” would be an exact synonym of 'dentate gyrus granule cell layer', even though “DG” (in this case) is an abbreviation for “dentate gyrus”. Note that without this context “DG” should not be considered an exact synonym for "dentate gyrus" as “DG” could also mean, among many things, the CHEBI term "DG" (7-deazaguanine). + +Compare the previous example to “EC layer 1”, which should be a _related_ synonym (with synonym type "abbreviation") of 'entorhinal cortex layer 1', where there is not enough context to confidently determine what "EC" stands for. + ## General Tips Changes to classifications of terms from the 2x, 3x and 4x range, or anything higher up in the hierarchy (e.g. 2 levels above leaf nodes) can create unintended consequences to the ontology (e.g. due to , and it’s best to get a senior ontologist to review (e.g. @cmungall) diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 84a536a80a..4a755541d7 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -62,7 +62,7 @@ PATTERN_RELEASE_FILES= $(PATTERNDIR)/definitions.owl $(PATTERNDIR)/pattern. FORMATS = $(sort owl obo json owl) FORMATS_INCL_TSV = $(sort $(FORMATS) tsv) -RELEASE_ARTEFACTS = $(sort $(ONT)-base $(ONT)-full $(ONT)-simple $(ONT)-basic ext basic composite-metazoan composite-metazoan-basic composite-vertebrate composite-vertebrate-basic ) +RELEASE_ARTEFACTS = $(sort $(ONT)-base $(ONT)-full $(ONT)-simple $(ONT)-basic ext basic composite-metazoan composite-metazoan-basic composite-vertebrate composite-vertebrate-basic common-anatomy ) # ---------------------------------------- # Top-level targets @@ -703,6 +703,12 @@ composite-vertebrate-basic.json: composite-vertebrate-basic.owl $(ROBOT) annotate --input $< --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) \ convert --check false -f json -o $@.tmp.json &&\ mv $@.tmp.json $@ +common-anatomy.obo: common-anatomy.owl + $(ROBOT) convert --input $< --check false -f obo $(OBO_FORMAT_OPTIONS) -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@ && rm $@.tmp.obo +common-anatomy.json: common-anatomy.owl + $(ROBOT) annotate --input $< --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) \ + convert --check false -f json -o $@.tmp.json &&\ + mv $@.tmp.json $@ # ---------------------------------------- # Release artefacts: main release artefacts # ---------------------------------------- @@ -791,6 +797,9 @@ composite-vertebrate.owl: composite-vertebrate-basic.owl: echo "ERROR: You have configured a custom release artefact ($@); this release artefact needs to be define in uberon.Makefile!" && false + +common-anatomy.owl: + echo "ERROR: You have configured a custom release artefact ($@); this release artefact needs to be define in uberon.Makefile!" && false # ---------------------------------------- # Debugging Tools # ---------------------------------------- diff --git a/src/ontology/bridge/cl-bridge-to-aao.obo b/src/ontology/bridge/cl-bridge-to-aao.obo index cf6c5cb24f..5db38f50f4 100644 --- a/src/ontology/bridge/cl-bridge-to-aao.obo +++ b/src/ontology/bridge/cl-bridge-to-aao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-aao -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to aao" xsd:string property_value: dc-description "Equivalence axioms between AAO and CL. Note that AAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string diff --git a/src/ontology/bridge/cl-bridge-to-aao.owl b/src/ontology/bridge/cl-bridge-to-aao.owl index 92796917ea..b74fa6289d 100644 --- a/src/ontology/bridge/cl-bridge-to-aao.owl +++ b/src/ontology/bridge/cl-bridge-to-aao.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Erik Segerdell Paula Mabee CL editors diff --git a/src/ontology/bridge/cl-bridge-to-aeo.obo b/src/ontology/bridge/cl-bridge-to-aeo.obo index faf9698002..c34704bdfd 100644 --- a/src/ontology/bridge/cl-bridge-to-aeo.obo +++ b/src/ontology/bridge/cl-bridge-to-aeo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-aeo -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-aeo.owl b/src/ontology/bridge/cl-bridge-to-aeo.owl index 00b0e0a36e..d928d21bb1 100644 --- a/src/ontology/bridge/cl-bridge-to-aeo.owl +++ b/src/ontology/bridge/cl-bridge-to-aeo.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-bila.obo b/src/ontology/bridge/cl-bridge-to-bila.obo index 71390049b2..cb340b1ec3 100644 --- a/src/ontology/bridge/cl-bridge-to-bila.obo +++ b/src/ontology/bridge/cl-bridge-to-bila.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-bila -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/src/ontology/bridge/cl-bridge-to-bila.owl b/src/ontology/bridge/cl-bridge-to-bila.owl index 121f8ea848..afd0a8245c 100644 --- a/src/ontology/bridge/cl-bridge-to-bila.owl +++ b/src/ontology/bridge/cl-bridge-to-bila.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-bspo.obo b/src/ontology/bridge/cl-bridge-to-bspo.obo index 0d29157eab..23bbecce97 100644 --- a/src/ontology/bridge/cl-bridge-to-bspo.obo +++ b/src/ontology/bridge/cl-bridge-to-bspo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-bspo -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/src/ontology/bridge/cl-bridge-to-bspo.owl b/src/ontology/bridge/cl-bridge-to-bspo.owl index 964037741b..f1dd5f4f83 100644 --- a/src/ontology/bridge/cl-bridge-to-bspo.owl +++ b/src/ontology/bridge/cl-bridge-to-bspo.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-caro.obo b/src/ontology/bridge/cl-bridge-to-caro.obo index bcaf343b08..f61aa482bf 100644 --- a/src/ontology/bridge/cl-bridge-to-caro.obo +++ b/src/ontology/bridge/cl-bridge-to-caro.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-caro -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-caro.owl b/src/ontology/bridge/cl-bridge-to-caro.owl index 7c4cb37c6c..6ae72b9f7e 100644 --- a/src/ontology/bridge/cl-bridge-to-caro.owl +++ b/src/ontology/bridge/cl-bridge-to-caro.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-dhba.obo b/src/ontology/bridge/cl-bridge-to-dhba.obo index acb38548b7..785a05f6ee 100644 --- a/src/ontology/bridge/cl-bridge-to-dhba.obo +++ b/src/ontology/bridge/cl-bridge-to-dhba.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-dhba -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-dhba.owl b/src/ontology/bridge/cl-bridge-to-dhba.owl index adaac85ddb..3d3bbb46b1 100644 --- a/src/ontology/bridge/cl-bridge-to-dhba.owl +++ b/src/ontology/bridge/cl-bridge-to-dhba.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-efo.obo b/src/ontology/bridge/cl-bridge-to-efo.obo index 3cc90244d5..d1d82eb533 100644 --- a/src/ontology/bridge/cl-bridge-to-efo.obo +++ b/src/ontology/bridge/cl-bridge-to-efo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-efo -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-efo.owl b/src/ontology/bridge/cl-bridge-to-efo.owl index bccb702c4c..f403f19a95 100644 --- a/src/ontology/bridge/cl-bridge-to-efo.owl +++ b/src/ontology/bridge/cl-bridge-to-efo.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa.obo b/src/ontology/bridge/cl-bridge-to-ehdaa.obo index 444abdcff7..4e731b5380 100644 --- a/src/ontology/bridge/cl-bridge-to-ehdaa.obo +++ b/src/ontology/bridge/cl-bridge-to-ehdaa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-ehdaa -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa.owl b/src/ontology/bridge/cl-bridge-to-ehdaa.owl index d0585c7f48..fe58b4342a 100644 --- a/src/ontology/bridge/cl-bridge-to-ehdaa.owl +++ b/src/ontology/bridge/cl-bridge-to-ehdaa.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa2.obo b/src/ontology/bridge/cl-bridge-to-ehdaa2.obo index 0390da3eba..efe1f8268d 100644 --- a/src/ontology/bridge/cl-bridge-to-ehdaa2.obo +++ b/src/ontology/bridge/cl-bridge-to-ehdaa2.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-ehdaa2 -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to ehdaa2" xsd:string property_value: dc-description "Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA" xsd:string diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl index a745b40478..92f3772daa 100644 --- a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl +++ b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Jonathan Bard CL editors Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA diff --git a/src/ontology/bridge/cl-bridge-to-emapa.obo b/src/ontology/bridge/cl-bridge-to-emapa.obo index 74a6cbcc75..1596341cf5 100644 --- a/src/ontology/bridge/cl-bridge-to-emapa.obo +++ b/src/ontology/bridge/cl-bridge-to-emapa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-emapa -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to emapa" xsd:string property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and CL" xsd:string diff --git a/src/ontology/bridge/cl-bridge-to-emapa.owl b/src/ontology/bridge/cl-bridge-to-emapa.owl index 0a847b592c..79d37c0660 100644 --- a/src/ontology/bridge/cl-bridge-to-emapa.owl +++ b/src/ontology/bridge/cl-bridge-to-emapa.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Anne Niknejad Aurelie Comte CL editors diff --git a/src/ontology/bridge/cl-bridge-to-ev.obo b/src/ontology/bridge/cl-bridge-to-ev.obo index a6fb228c60..76258269cd 100644 --- a/src/ontology/bridge/cl-bridge-to-ev.obo +++ b/src/ontology/bridge/cl-bridge-to-ev.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-ev -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-ev.owl b/src/ontology/bridge/cl-bridge-to-ev.owl index 50e51d9a02..89d4f60a5a 100644 --- a/src/ontology/bridge/cl-bridge-to-ev.owl +++ b/src/ontology/bridge/cl-bridge-to-ev.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-fbbt.obo b/src/ontology/bridge/cl-bridge-to-fbbt.obo index ed02052172..30a269a508 100644 --- a/src/ontology/bridge/cl-bridge-to-fbbt.obo +++ b/src/ontology/bridge/cl-bridge-to-fbbt.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-fbbt -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to fbbt" xsd:string property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and CL. Note that currently CL focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future CL may bridge via the arthropod anatomy ontology" xsd:string @@ -256,8 +256,8 @@ intersection_of: part_of NCBITaxon:7227 [Term] id: FBbt:00004903 ! -property_value: IAO:0000589 "follicle stem cell (drosophila)" xsd:string -intersection_of: CL:0000441 ! follicle stem cell +property_value: IAO:0000589 "follicle stem cell (sensu Arthropoda) (drosophila)" xsd:string +intersection_of: CL:0000441 ! follicle stem cell (sensu Arthropoda) intersection_of: part_of NCBITaxon:7227 [Term] diff --git a/src/ontology/bridge/cl-bridge-to-fbbt.owl b/src/ontology/bridge/cl-bridge-to-fbbt.owl index d1964f2ff6..46cb589a4f 100644 --- a/src/ontology/bridge/cl-bridge-to-fbbt.owl +++ b/src/ontology/bridge/cl-bridge-to-fbbt.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + David Osumi-Sutherland CL editors Taxonomic equivalence axioms between the drosophila anatomy ontology and CL. Note that currently CL focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future CL may bridge via the arthropod anatomy ontology @@ -1189,7 +1189,7 @@ - follicle stem cell (drosophila) + follicle stem cell (sensu Arthropoda) (drosophila) FBbt:00004903 diff --git a/src/ontology/bridge/cl-bridge-to-fbdv.obo b/src/ontology/bridge/cl-bridge-to-fbdv.obo index fa1649b64a..7472ac49d7 100644 --- a/src/ontology/bridge/cl-bridge-to-fbdv.obo +++ b/src/ontology/bridge/cl-bridge-to-fbdv.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-fbdv -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-fbdv.owl b/src/ontology/bridge/cl-bridge-to-fbdv.owl index 95e42d71d4..f06cd03c5f 100644 --- a/src/ontology/bridge/cl-bridge-to-fbdv.owl +++ b/src/ontology/bridge/cl-bridge-to-fbdv.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-fma.obo b/src/ontology/bridge/cl-bridge-to-fma.obo index ba117b54cf..cc5d4d8bcd 100644 --- a/src/ontology/bridge/cl-bridge-to-fma.obo +++ b/src/ontology/bridge/cl-bridge-to-fma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-fma -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to fma" xsd:string property_value: dc-description "Taxonomic equivalence axioms between the FMA and CL" xsd:string @@ -4263,6 +4263,18 @@ property_value: IAO:0000589 "cochlea auditory hair cell (post-embryonic human)" intersection_of: CL:4023120 ! cochlea auditory hair cell intersection_of: part_of NCBITaxon:9606 +[Term] +id: FMA:84155 ! +property_value: IAO:0000589 "intermediate cell of urothelium (post-embryonic human)" xsd:string +intersection_of: CL:4030055 ! intermediate cell of urothelium +intersection_of: part_of NCBITaxon:9606 + +[Term] +id: FMA:84149 ! +property_value: IAO:0000589 "umbrella cell of urothelium (post-embryonic human)" xsd:string +intersection_of: CL:4030056 ! umbrella cell of urothelium +intersection_of: part_of NCBITaxon:9606 + [Term] id: FMA:ENTITY name: FMA entity diff --git a/src/ontology/bridge/cl-bridge-to-fma.owl b/src/ontology/bridge/cl-bridge-to-fma.owl index fb40bc34e3..de0b1a510d 100644 --- a/src/ontology/bridge/cl-bridge-to-fma.owl +++ b/src/ontology/bridge/cl-bridge-to-fma.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Onard Mejino Terry Hayamizu CL editors @@ -4442,6 +4442,18 @@ + + + + + + + + + + + + @@ -16366,6 +16378,26 @@ + + + + + + + + + + + + + + + umbrella cell of urothelium (post-embryonic human) + FMA:84149 + + + + @@ -16386,6 +16418,26 @@ + + + + + + + + + + + + + + + intermediate cell of urothelium (post-embryonic human) + FMA:84155 + + + + diff --git a/src/ontology/bridge/cl-bridge-to-go.obo b/src/ontology/bridge/cl-bridge-to-go.obo index 1b78e61407..f7307e483d 100644 --- a/src/ontology/bridge/cl-bridge-to-go.obo +++ b/src/ontology/bridge/cl-bridge-to-go.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-go -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-go.owl b/src/ontology/bridge/cl-bridge-to-go.owl index b78919d495..3d20d570d3 100644 --- a/src/ontology/bridge/cl-bridge-to-go.owl +++ b/src/ontology/bridge/cl-bridge-to-go.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-hao.obo b/src/ontology/bridge/cl-bridge-to-hao.obo index e768da0f1f..1724bacfdf 100644 --- a/src/ontology/bridge/cl-bridge-to-hao.obo +++ b/src/ontology/bridge/cl-bridge-to-hao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-hao -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-hao.owl b/src/ontology/bridge/cl-bridge-to-hao.owl index 1361d67c30..ff75b6d4fb 100644 --- a/src/ontology/bridge/cl-bridge-to-hao.owl +++ b/src/ontology/bridge/cl-bridge-to-hao.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-hba.obo b/src/ontology/bridge/cl-bridge-to-hba.obo index 54b1fcd7ba..e12d2b367b 100644 --- a/src/ontology/bridge/cl-bridge-to-hba.obo +++ b/src/ontology/bridge/cl-bridge-to-hba.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-hba -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-hba.owl b/src/ontology/bridge/cl-bridge-to-hba.owl index e34e9dff80..95b6058a5b 100644 --- a/src/ontology/bridge/cl-bridge-to-hba.owl +++ b/src/ontology/bridge/cl-bridge-to-hba.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-hsapdv.obo b/src/ontology/bridge/cl-bridge-to-hsapdv.obo index 24ed7f76de..15ec4f51ea 100644 --- a/src/ontology/bridge/cl-bridge-to-hsapdv.obo +++ b/src/ontology/bridge/cl-bridge-to-hsapdv.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-hsapdv -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-hsapdv.owl b/src/ontology/bridge/cl-bridge-to-hsapdv.owl index e85f10038f..a450469f6c 100644 --- a/src/ontology/bridge/cl-bridge-to-hsapdv.owl +++ b/src/ontology/bridge/cl-bridge-to-hsapdv.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-ma.obo b/src/ontology/bridge/cl-bridge-to-ma.obo index 65d0d83960..f1d9b6a439 100644 --- a/src/ontology/bridge/cl-bridge-to-ma.obo +++ b/src/ontology/bridge/cl-bridge-to-ma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-ma -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to ma" xsd:string property_value: dc-description "Taxonomic equivalence axioms between adult moouse anatomy and CL" xsd:string diff --git a/src/ontology/bridge/cl-bridge-to-ma.owl b/src/ontology/bridge/cl-bridge-to-ma.owl index 83943ef868..32fbd0f790 100644 --- a/src/ontology/bridge/cl-bridge-to-ma.owl +++ b/src/ontology/bridge/cl-bridge-to-ma.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + George Gkoutos CL editors Terry Hayamizu diff --git a/src/ontology/bridge/cl-bridge-to-mfo.obo b/src/ontology/bridge/cl-bridge-to-mfo.obo index f231091829..25b520d91f 100644 --- a/src/ontology/bridge/cl-bridge-to-mfo.obo +++ b/src/ontology/bridge/cl-bridge-to-mfo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-mfo -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-mfo.owl b/src/ontology/bridge/cl-bridge-to-mfo.owl index 2126d4f0d9..cef0027e73 100644 --- a/src/ontology/bridge/cl-bridge-to-mfo.owl +++ b/src/ontology/bridge/cl-bridge-to-mfo.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-mmusdv.obo b/src/ontology/bridge/cl-bridge-to-mmusdv.obo index ab389fecbd..33d8a55644 100644 --- a/src/ontology/bridge/cl-bridge-to-mmusdv.obo +++ b/src/ontology/bridge/cl-bridge-to-mmusdv.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-mmusdv -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-mmusdv.owl b/src/ontology/bridge/cl-bridge-to-mmusdv.owl index 443cfd0510..1ef4dad48d 100644 --- a/src/ontology/bridge/cl-bridge-to-mmusdv.owl +++ b/src/ontology/bridge/cl-bridge-to-mmusdv.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-ncit.obo b/src/ontology/bridge/cl-bridge-to-ncit.obo index aeb714f8c6..67f23f253c 100644 --- a/src/ontology/bridge/cl-bridge-to-ncit.obo +++ b/src/ontology/bridge/cl-bridge-to-ncit.obo @@ -1,7 +1,27 @@ ontology: uberon/bridge/cl-bridge-to-ncit -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI +[Term] +id: NCIT:C12482 ! +property_value: IAO:0000589 "fibroblast (NCIT)" xsd:string +is_a: CL:0000057 ! fibroblast + +[Term] +id: NCIT:C12597 ! +property_value: IAO:0000589 "germ cell (NCIT)" xsd:string +is_a: CL:0000586 ! germ cell + +[Term] +id: NCIT:C12529 ! +property_value: IAO:0000589 "leukocyte (NCIT)" xsd:string +is_a: CL:0000738 ! leukocyte + +[Term] +id: NCIT:C32210 ! +property_value: IAO:0000589 "bladder urothelial cell (NCIT)" xsd:string +is_a: CL:1001428 ! bladder urothelial cell + [Term] id: NCIT:C32429 ! property_value: IAO:0000589 "decidual cell (NCIT)" xsd:string diff --git a/src/ontology/bridge/cl-bridge-to-ncit.owl b/src/ontology/bridge/cl-bridge-to-ncit.owl index d68ee98173..cf3852f558 100644 --- a/src/ontology/bridge/cl-bridge-to-ncit.owl +++ b/src/ontology/bridge/cl-bridge-to-ncit.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 @@ -314,6 +314,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + @@ -326,6 +350,36 @@ + + + + + fibroblast (NCIT) + NCIT:C12482 + + + + + + + + + leukocyte (NCIT) + NCIT:C12529 + + + + + + + + + germ cell (NCIT) + NCIT:C12597 + + + + @@ -336,6 +390,16 @@ + + + + + bladder urothelial cell (NCIT) + NCIT:C32210 + + + + diff --git a/src/ontology/bridge/cl-bridge-to-og.obo b/src/ontology/bridge/cl-bridge-to-og.obo index 5a73625613..2a77230e58 100644 --- a/src/ontology/bridge/cl-bridge-to-og.obo +++ b/src/ontology/bridge/cl-bridge-to-og.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-og -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/src/ontology/bridge/cl-bridge-to-og.owl b/src/ontology/bridge/cl-bridge-to-og.owl index 6470ede72e..a78263049e 100644 --- a/src/ontology/bridge/cl-bridge-to-og.owl +++ b/src/ontology/bridge/cl-bridge-to-og.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-oges.obo b/src/ontology/bridge/cl-bridge-to-oges.obo index b630c2a209..c5edcfb924 100644 --- a/src/ontology/bridge/cl-bridge-to-oges.obo +++ b/src/ontology/bridge/cl-bridge-to-oges.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-oges -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/src/ontology/bridge/cl-bridge-to-oges.owl b/src/ontology/bridge/cl-bridge-to-oges.owl index 16503a1137..63006e2fce 100644 --- a/src/ontology/bridge/cl-bridge-to-oges.owl +++ b/src/ontology/bridge/cl-bridge-to-oges.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-olatdv.obo b/src/ontology/bridge/cl-bridge-to-olatdv.obo index ce44a6e7e0..45b8e15c7b 100644 --- a/src/ontology/bridge/cl-bridge-to-olatdv.obo +++ b/src/ontology/bridge/cl-bridge-to-olatdv.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-olatdv -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-olatdv.owl b/src/ontology/bridge/cl-bridge-to-olatdv.owl index 0652a5e0ea..30f5172936 100644 --- a/src/ontology/bridge/cl-bridge-to-olatdv.owl +++ b/src/ontology/bridge/cl-bridge-to-olatdv.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-pba.obo b/src/ontology/bridge/cl-bridge-to-pba.obo index da77825eb3..3debffa2e1 100644 --- a/src/ontology/bridge/cl-bridge-to-pba.obo +++ b/src/ontology/bridge/cl-bridge-to-pba.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-pba -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-pba.owl b/src/ontology/bridge/cl-bridge-to-pba.owl index 46f9028f61..f2cd921f28 100644 --- a/src/ontology/bridge/cl-bridge-to-pba.owl +++ b/src/ontology/bridge/cl-bridge-to-pba.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-sctid.obo b/src/ontology/bridge/cl-bridge-to-sctid.obo index cf7367ab50..2952424cb2 100644 --- a/src/ontology/bridge/cl-bridge-to-sctid.obo +++ b/src/ontology/bridge/cl-bridge-to-sctid.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-sctid -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to SNOMED-CT" xsd:string property_value: dc-description "Rough subclass axioms between SNOMED-CT and CL. Note that in SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree." xsd:string diff --git a/src/ontology/bridge/cl-bridge-to-sctid.owl b/src/ontology/bridge/cl-bridge-to-sctid.owl index b412837ef3..544225212d 100644 --- a/src/ontology/bridge/cl-bridge-to-sctid.owl +++ b/src/ontology/bridge/cl-bridge-to-sctid.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + OBOL CL editors Rough subclass axioms between SNOMED-CT and CL. Note that in SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree. diff --git a/src/ontology/bridge/cl-bridge-to-spd.obo b/src/ontology/bridge/cl-bridge-to-spd.obo index 14ba68826c..9073877345 100644 --- a/src/ontology/bridge/cl-bridge-to-spd.obo +++ b/src/ontology/bridge/cl-bridge-to-spd.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-spd -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-spd.owl b/src/ontology/bridge/cl-bridge-to-spd.owl index 2b178e4ba3..31d2db152e 100644 --- a/src/ontology/bridge/cl-bridge-to-spd.owl +++ b/src/ontology/bridge/cl-bridge-to-spd.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-tads.obo b/src/ontology/bridge/cl-bridge-to-tads.obo index 23889a131c..c3fe7d22cc 100644 --- a/src/ontology/bridge/cl-bridge-to-tads.obo +++ b/src/ontology/bridge/cl-bridge-to-tads.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-tads -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-tads.owl b/src/ontology/bridge/cl-bridge-to-tads.owl index 4e502eb9eb..ba82287c4b 100644 --- a/src/ontology/bridge/cl-bridge-to-tads.owl +++ b/src/ontology/bridge/cl-bridge-to-tads.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-tao.obo b/src/ontology/bridge/cl-bridge-to-tao.obo index 23bad4d990..fbf08178d7 100644 --- a/src/ontology/bridge/cl-bridge-to-tao.obo +++ b/src/ontology/bridge/cl-bridge-to-tao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-tao -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to tao" xsd:string property_value: dc-description "Taxonomic equivalence axioms between TAO and CL. Note that TAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string diff --git a/src/ontology/bridge/cl-bridge-to-tao.owl b/src/ontology/bridge/cl-bridge-to-tao.owl index cc9b39b60c..eda265a242 100644 --- a/src/ontology/bridge/cl-bridge-to-tao.owl +++ b/src/ontology/bridge/cl-bridge-to-tao.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Paula Mabee Wasila Dahdul CL editors diff --git a/src/ontology/bridge/cl-bridge-to-tgma.obo b/src/ontology/bridge/cl-bridge-to-tgma.obo index b21a9a4a20..56b0b188f1 100644 --- a/src/ontology/bridge/cl-bridge-to-tgma.obo +++ b/src/ontology/bridge/cl-bridge-to-tgma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-tgma -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-tgma.owl b/src/ontology/bridge/cl-bridge-to-tgma.owl index 074d52667e..f9dfbbfc81 100644 --- a/src/ontology/bridge/cl-bridge-to-tgma.owl +++ b/src/ontology/bridge/cl-bridge-to-tgma.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-vsao.obo b/src/ontology/bridge/cl-bridge-to-vsao.obo index 0b60ad40f3..50026d217a 100644 --- a/src/ontology/bridge/cl-bridge-to-vsao.obo +++ b/src/ontology/bridge/cl-bridge-to-vsao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-vsao -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to vsao" xsd:string property_value: dc-description "Equivalence axioms between VSAO and CL. Note that VSAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string diff --git a/src/ontology/bridge/cl-bridge-to-vsao.owl b/src/ontology/bridge/cl-bridge-to-vsao.owl index 9f83d2ac6b..acea2f6825 100644 --- a/src/ontology/bridge/cl-bridge-to-vsao.owl +++ b/src/ontology/bridge/cl-bridge-to-vsao.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Alexander Diehl Paula Mabee CL editors diff --git a/src/ontology/bridge/cl-bridge-to-wbbt.obo b/src/ontology/bridge/cl-bridge-to-wbbt.obo index 2ed406b5e1..48366c0b90 100644 --- a/src/ontology/bridge/cl-bridge-to-wbbt.obo +++ b/src/ontology/bridge/cl-bridge-to-wbbt.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-wbbt -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-wbbt.owl b/src/ontology/bridge/cl-bridge-to-wbbt.owl index 2951cbd423..855906e240 100644 --- a/src/ontology/bridge/cl-bridge-to-wbbt.owl +++ b/src/ontology/bridge/cl-bridge-to-wbbt.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-wbls.obo b/src/ontology/bridge/cl-bridge-to-wbls.obo index 7e2eb745d1..87e21fca59 100644 --- a/src/ontology/bridge/cl-bridge-to-wbls.obo +++ b/src/ontology/bridge/cl-bridge-to-wbls.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-wbls -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-wbls.owl b/src/ontology/bridge/cl-bridge-to-wbls.owl index b105c10e37..2778f29b49 100644 --- a/src/ontology/bridge/cl-bridge-to-wbls.owl +++ b/src/ontology/bridge/cl-bridge-to-wbls.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/cl-bridge-to-xao.obo b/src/ontology/bridge/cl-bridge-to-xao.obo index 55df352ddd..995abef7f0 100644 --- a/src/ontology/bridge/cl-bridge-to-xao.obo +++ b/src/ontology/bridge/cl-bridge-to-xao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-xao -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to xao" xsd:string property_value: dc-description "Taxonomic equivalence axioms between XAO and CL" xsd:string diff --git a/src/ontology/bridge/cl-bridge-to-xao.owl b/src/ontology/bridge/cl-bridge-to-xao.owl index 931d7f43b7..2713c68935 100644 --- a/src/ontology/bridge/cl-bridge-to-xao.owl +++ b/src/ontology/bridge/cl-bridge-to-xao.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Erik Segerdell VG Ponferrada CL editors diff --git a/src/ontology/bridge/cl-bridge-to-zfa.obo b/src/ontology/bridge/cl-bridge-to-zfa.obo index a3273a5608..f0957552c7 100644 --- a/src/ontology/bridge/cl-bridge-to-zfa.obo +++ b/src/ontology/bridge/cl-bridge-to-zfa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-zfa -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to zfa" xsd:string property_value: dc-description "Taxonomic equivalence axioms between ZFA and CL" xsd:string diff --git a/src/ontology/bridge/cl-bridge-to-zfa.owl b/src/ontology/bridge/cl-bridge-to-zfa.owl index d0cec725aa..af0bf9bded 100644 --- a/src/ontology/bridge/cl-bridge-to-zfa.owl +++ b/src/ontology/bridge/cl-bridge-to-zfa.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Ceri Van Slyke Melissa Haendel Yvonne Bradford diff --git a/src/ontology/bridge/cl-bridge-to-zfs.obo b/src/ontology/bridge/cl-bridge-to-zfs.obo index d4515173f4..6916df5ec2 100644 --- a/src/ontology/bridge/cl-bridge-to-zfs.obo +++ b/src/ontology/bridge/cl-bridge-to-zfs.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-zfs -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/cl-bridge-to-zfs.owl b/src/ontology/bridge/cl-bridge-to-zfs.owl index 44d57f4af5..05b14d80fe 100644 --- a/src/ontology/bridge/cl-bridge-to-zfs.owl +++ b/src/ontology/bridge/cl-bridge-to-zfs.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-aao.obo b/src/ontology/bridge/uberon-bridge-to-aao.obo index 749440079f..8a337351ce 100644 --- a/src/ontology/bridge/uberon-bridge-to-aao.obo +++ b/src/ontology/bridge/uberon-bridge-to-aao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-aao -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to aao" xsd:string property_value: dc-description "Equivalence axioms between AAO and Uberon. Note that AAO is in the process of being merged into the core Uberon, so this mapping will become deprecated" xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-aao.owl b/src/ontology/bridge/uberon-bridge-to-aao.owl index b93eb8aad8..c8335fdde6 100644 --- a/src/ontology/bridge/uberon-bridge-to-aao.owl +++ b/src/ontology/bridge/uberon-bridge-to-aao.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Erik Segerdell Paula Mabee David Blackburn diff --git a/src/ontology/bridge/uberon-bridge-to-aeo.obo b/src/ontology/bridge/uberon-bridge-to-aeo.obo index c1a27b087c..8c8bda643a 100644 --- a/src/ontology/bridge/uberon-bridge-to-aeo.obo +++ b/src/ontology/bridge/uberon-bridge-to-aeo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-aeo -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-aeo.owl b/src/ontology/bridge/uberon-bridge-to-aeo.owl index c33f55c1cf..447be33c8f 100644 --- a/src/ontology/bridge/uberon-bridge-to-aeo.owl +++ b/src/ontology/bridge/uberon-bridge-to-aeo.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-bila.obo b/src/ontology/bridge/uberon-bridge-to-bila.obo index a45dc471da..ffafd9624e 100644 --- a/src/ontology/bridge/uberon-bridge-to-bila.obo +++ b/src/ontology/bridge/uberon-bridge-to-bila.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-bila -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-bila.owl b/src/ontology/bridge/uberon-bridge-to-bila.owl index c6f0c17712..eb00ab7d94 100644 --- a/src/ontology/bridge/uberon-bridge-to-bila.owl +++ b/src/ontology/bridge/uberon-bridge-to-bila.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-bspo.obo b/src/ontology/bridge/uberon-bridge-to-bspo.obo index eda74927d4..ef0fcf7989 100644 --- a/src/ontology/bridge/uberon-bridge-to-bspo.obo +++ b/src/ontology/bridge/uberon-bridge-to-bspo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-bspo -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/src/ontology/bridge/uberon-bridge-to-bspo.owl b/src/ontology/bridge/uberon-bridge-to-bspo.owl index e83b220f4e..b8b73d7a01 100644 --- a/src/ontology/bridge/uberon-bridge-to-bspo.owl +++ b/src/ontology/bridge/uberon-bridge-to-bspo.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-caro.obo b/src/ontology/bridge/uberon-bridge-to-caro.obo index 6cae4c3975..8991798c10 100644 --- a/src/ontology/bridge/uberon-bridge-to-caro.obo +++ b/src/ontology/bridge/uberon-bridge-to-caro.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-caro -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-caro.owl b/src/ontology/bridge/uberon-bridge-to-caro.owl index 59a4b0014a..ef2f114195 100644 --- a/src/ontology/bridge/uberon-bridge-to-caro.owl +++ b/src/ontology/bridge/uberon-bridge-to-caro.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-dhba.obo b/src/ontology/bridge/uberon-bridge-to-dhba.obo index b5d415a6c3..7a0fa924d3 100644 --- a/src/ontology/bridge/uberon-bridge-to-dhba.obo +++ b/src/ontology/bridge/uberon-bridge-to-dhba.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-dhba -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-dhba.owl b/src/ontology/bridge/uberon-bridge-to-dhba.owl index 13dd7092cc..d77a6dd7b3 100644 --- a/src/ontology/bridge/uberon-bridge-to-dhba.owl +++ b/src/ontology/bridge/uberon-bridge-to-dhba.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-efo.obo b/src/ontology/bridge/uberon-bridge-to-efo.obo index 900fb5d30c..f00f419dbc 100644 --- a/src/ontology/bridge/uberon-bridge-to-efo.obo +++ b/src/ontology/bridge/uberon-bridge-to-efo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-efo -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-efo.owl b/src/ontology/bridge/uberon-bridge-to-efo.owl index dc8cb4f590..50a5655c20 100644 --- a/src/ontology/bridge/uberon-bridge-to-efo.owl +++ b/src/ontology/bridge/uberon-bridge-to-efo.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-ehdaa.obo b/src/ontology/bridge/uberon-bridge-to-ehdaa.obo index 72c06e1b7c..ac19197f16 100644 --- a/src/ontology/bridge/uberon-bridge-to-ehdaa.obo +++ b/src/ontology/bridge/uberon-bridge-to-ehdaa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-ehdaa -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-ehdaa.owl b/src/ontology/bridge/uberon-bridge-to-ehdaa.owl index c743a2795f..f6f79283cb 100644 --- a/src/ontology/bridge/uberon-bridge-to-ehdaa.owl +++ b/src/ontology/bridge/uberon-bridge-to-ehdaa.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-ehdaa2.obo b/src/ontology/bridge/uberon-bridge-to-ehdaa2.obo index 5b08d6a7ae..6dcd16180e 100644 --- a/src/ontology/bridge/uberon-bridge-to-ehdaa2.obo +++ b/src/ontology/bridge/uberon-bridge-to-ehdaa2.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-ehdaa2 -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to ehdaa2" xsd:string property_value: dc-description "Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA" xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl index c45ff89830..1193d37186 100644 --- a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl +++ b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Jonathan Bard Uberon editors Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA diff --git a/src/ontology/bridge/uberon-bridge-to-emapa.obo b/src/ontology/bridge/uberon-bridge-to-emapa.obo index 0ca0474a40..f33f1703e2 100644 --- a/src/ontology/bridge/uberon-bridge-to-emapa.obo +++ b/src/ontology/bridge/uberon-bridge-to-emapa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-emapa -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to emapa" xsd:string property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and Uberon" xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-emapa.owl b/src/ontology/bridge/uberon-bridge-to-emapa.owl index 175846bf2f..1fc2fa2883 100644 --- a/src/ontology/bridge/uberon-bridge-to-emapa.owl +++ b/src/ontology/bridge/uberon-bridge-to-emapa.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Anne Niknejad Aurelie Comte Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-ev.obo b/src/ontology/bridge/uberon-bridge-to-ev.obo index 12b3d69815..2cf1cd0dc3 100644 --- a/src/ontology/bridge/uberon-bridge-to-ev.obo +++ b/src/ontology/bridge/uberon-bridge-to-ev.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-ev -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-ev.owl b/src/ontology/bridge/uberon-bridge-to-ev.owl index 6daa5f0ccc..d8227b5bc3 100644 --- a/src/ontology/bridge/uberon-bridge-to-ev.owl +++ b/src/ontology/bridge/uberon-bridge-to-ev.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-fbbt.obo b/src/ontology/bridge/uberon-bridge-to-fbbt.obo index 6a451f0cd5..d4eafde2db 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbbt.obo +++ b/src/ontology/bridge/uberon-bridge-to-fbbt.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-fbbt -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to fbbt" xsd:string property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and Uberon. Note that currently Uberon focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future Uberon may bridge via the arthropod anatomy ontology" xsd:string @@ -578,6 +578,12 @@ property_value: IAO:0000589 "pupa (drosophila)" xsd:string intersection_of: UBERON:0003143 ! pupa intersection_of: part_of NCBITaxon:7227 +[Term] +id: FBbt:00004482 ! +property_value: IAO:0000589 "insect head capsule (drosophila)" xsd:string +intersection_of: UBERON:0003153 ! insect head capsule +intersection_of: part_of NCBITaxon:7227 + [Term] id: FBbt:00004492 ! property_value: IAO:0000589 "arthropod occiput (drosophila)" xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-fbbt.owl b/src/ontology/bridge/uberon-bridge-to-fbbt.owl index 031916f631..bc24673b7a 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbbt.owl +++ b/src/ontology/bridge/uberon-bridge-to-fbbt.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + David Osumi-Sutherland Uberon editors Taxonomic equivalence axioms between the drosophila anatomy ontology and Uberon. Note that currently Uberon focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future Uberon may bridge via the arthropod anatomy ontology @@ -3613,6 +3613,26 @@ + + + + + + + + + + + + + + + insect head capsule (drosophila) + FBbt:00004482 + + + + @@ -8177,6 +8197,12 @@ + + + + + + diff --git a/src/ontology/bridge/uberon-bridge-to-fbdv.obo b/src/ontology/bridge/uberon-bridge-to-fbdv.obo index 8cb144eaca..7b6a776ed6 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbdv.obo +++ b/src/ontology/bridge/uberon-bridge-to-fbdv.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-fbdv -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-fbdv.owl b/src/ontology/bridge/uberon-bridge-to-fbdv.owl index e11654d92b..e9bd6b5c02 100644 --- a/src/ontology/bridge/uberon-bridge-to-fbdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-fbdv.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-fma.obo b/src/ontology/bridge/uberon-bridge-to-fma.obo index 71de8c5ae3..f7a3c04534 100644 --- a/src/ontology/bridge/uberon-bridge-to-fma.obo +++ b/src/ontology/bridge/uberon-bridge-to-fma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-fma -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to fma" xsd:string property_value: dc-description "Taxonomic equivalence axioms between the FMA and Uberon" xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-fma.owl b/src/ontology/bridge/uberon-bridge-to-fma.owl index d8a8207bde..432b7ec71a 100644 --- a/src/ontology/bridge/uberon-bridge-to-fma.owl +++ b/src/ontology/bridge/uberon-bridge-to-fma.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Onard Mejino Terry Hayamizu Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-go.obo b/src/ontology/bridge/uberon-bridge-to-go.obo index ee40646bde..6ceff18b1d 100644 --- a/src/ontology/bridge/uberon-bridge-to-go.obo +++ b/src/ontology/bridge/uberon-bridge-to-go.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-go -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-go.owl b/src/ontology/bridge/uberon-bridge-to-go.owl index f6660ec7c6..e50c765f70 100644 --- a/src/ontology/bridge/uberon-bridge-to-go.owl +++ b/src/ontology/bridge/uberon-bridge-to-go.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-hao.obo b/src/ontology/bridge/uberon-bridge-to-hao.obo index 49ea213d1c..9f025d7600 100644 --- a/src/ontology/bridge/uberon-bridge-to-hao.obo +++ b/src/ontology/bridge/uberon-bridge-to-hao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-hao -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-hao.owl b/src/ontology/bridge/uberon-bridge-to-hao.owl index 0197791038..cb38356b8f 100644 --- a/src/ontology/bridge/uberon-bridge-to-hao.owl +++ b/src/ontology/bridge/uberon-bridge-to-hao.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-hba.obo b/src/ontology/bridge/uberon-bridge-to-hba.obo index 6a502b08bc..8dfab2a05d 100644 --- a/src/ontology/bridge/uberon-bridge-to-hba.obo +++ b/src/ontology/bridge/uberon-bridge-to-hba.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-hba -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-hba.owl b/src/ontology/bridge/uberon-bridge-to-hba.owl index 7ff55887e8..e77cefbe01 100644 --- a/src/ontology/bridge/uberon-bridge-to-hba.owl +++ b/src/ontology/bridge/uberon-bridge-to-hba.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-hsapdv.obo b/src/ontology/bridge/uberon-bridge-to-hsapdv.obo index 3d5eec3034..424610e07c 100644 --- a/src/ontology/bridge/uberon-bridge-to-hsapdv.obo +++ b/src/ontology/bridge/uberon-bridge-to-hsapdv.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-hsapdv -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl index d76779879e..6dd36689ec 100644 --- a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-ma.obo b/src/ontology/bridge/uberon-bridge-to-ma.obo index 36f895a459..5055c47ff4 100644 --- a/src/ontology/bridge/uberon-bridge-to-ma.obo +++ b/src/ontology/bridge/uberon-bridge-to-ma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-ma -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to ma" xsd:string property_value: dc-description "Taxonomic equivalence axioms between adult moouse anatomy and Uberon" xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-ma.owl b/src/ontology/bridge/uberon-bridge-to-ma.owl index 0222339e80..e22d53c2f0 100644 --- a/src/ontology/bridge/uberon-bridge-to-ma.owl +++ b/src/ontology/bridge/uberon-bridge-to-ma.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + George Gkoutos Terry Hayamizu Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-mfo.obo b/src/ontology/bridge/uberon-bridge-to-mfo.obo index aa3230c536..85e4aff132 100644 --- a/src/ontology/bridge/uberon-bridge-to-mfo.obo +++ b/src/ontology/bridge/uberon-bridge-to-mfo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-mfo -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-mfo.owl b/src/ontology/bridge/uberon-bridge-to-mfo.owl index d04dae956f..f79beaac10 100644 --- a/src/ontology/bridge/uberon-bridge-to-mfo.owl +++ b/src/ontology/bridge/uberon-bridge-to-mfo.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-mmusdv.obo b/src/ontology/bridge/uberon-bridge-to-mmusdv.obo index 90e073b062..e914aaa0df 100644 --- a/src/ontology/bridge/uberon-bridge-to-mmusdv.obo +++ b/src/ontology/bridge/uberon-bridge-to-mmusdv.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-mmusdv -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl index 396f61cbb3..b3533b1652 100644 --- a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-ncit.obo b/src/ontology/bridge/uberon-bridge-to-ncit.obo index dd7fb881d7..d17f1ed93f 100644 --- a/src/ontology/bridge/uberon-bridge-to-ncit.obo +++ b/src/ontology/bridge/uberon-bridge-to-ncit.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-ncit -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-ncit.owl b/src/ontology/bridge/uberon-bridge-to-ncit.owl index 91c7f48599..b758da664e 100644 --- a/src/ontology/bridge/uberon-bridge-to-ncit.owl +++ b/src/ontology/bridge/uberon-bridge-to-ncit.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-og.obo b/src/ontology/bridge/uberon-bridge-to-og.obo index c08c8fcb4e..c937e666bd 100644 --- a/src/ontology/bridge/uberon-bridge-to-og.obo +++ b/src/ontology/bridge/uberon-bridge-to-og.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-og -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/src/ontology/bridge/uberon-bridge-to-og.owl b/src/ontology/bridge/uberon-bridge-to-og.owl index c83eb3f875..645c29a437 100644 --- a/src/ontology/bridge/uberon-bridge-to-og.owl +++ b/src/ontology/bridge/uberon-bridge-to-og.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-oges.obo b/src/ontology/bridge/uberon-bridge-to-oges.obo index 69374a82dd..3a1a706d7d 100644 --- a/src/ontology/bridge/uberon-bridge-to-oges.obo +++ b/src/ontology/bridge/uberon-bridge-to-oges.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-oges -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-oges.owl b/src/ontology/bridge/uberon-bridge-to-oges.owl index e0eba59813..fcab07537b 100644 --- a/src/ontology/bridge/uberon-bridge-to-oges.owl +++ b/src/ontology/bridge/uberon-bridge-to-oges.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-olatdv.obo b/src/ontology/bridge/uberon-bridge-to-olatdv.obo index 9c27733a1b..abf128fb57 100644 --- a/src/ontology/bridge/uberon-bridge-to-olatdv.obo +++ b/src/ontology/bridge/uberon-bridge-to-olatdv.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-olatdv -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-olatdv.owl b/src/ontology/bridge/uberon-bridge-to-olatdv.owl index 78a1dee4a6..e472ec9337 100644 --- a/src/ontology/bridge/uberon-bridge-to-olatdv.owl +++ b/src/ontology/bridge/uberon-bridge-to-olatdv.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-pba.obo b/src/ontology/bridge/uberon-bridge-to-pba.obo index 6dc80af3ca..64d821f2af 100644 --- a/src/ontology/bridge/uberon-bridge-to-pba.obo +++ b/src/ontology/bridge/uberon-bridge-to-pba.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-pba -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-pba.owl b/src/ontology/bridge/uberon-bridge-to-pba.owl index f8c0a76d15..6a5656d31b 100644 --- a/src/ontology/bridge/uberon-bridge-to-pba.owl +++ b/src/ontology/bridge/uberon-bridge-to-pba.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-sctid.obo b/src/ontology/bridge/uberon-bridge-to-sctid.obo index 0dc36d194e..62805c1aa0 100644 --- a/src/ontology/bridge/uberon-bridge-to-sctid.obo +++ b/src/ontology/bridge/uberon-bridge-to-sctid.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-sctid -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to SNOMED-CT" xsd:string property_value: dc-description "Rough subclass axioms between SNOMED-CT and Uberon. Note that in SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree." xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-sctid.owl b/src/ontology/bridge/uberon-bridge-to-sctid.owl index 657cb9ed8f..ca42656ac2 100644 --- a/src/ontology/bridge/uberon-bridge-to-sctid.owl +++ b/src/ontology/bridge/uberon-bridge-to-sctid.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + OBOL Uberon editors Rough subclass axioms between SNOMED-CT and Uberon. Note that in SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree. diff --git a/src/ontology/bridge/uberon-bridge-to-spd.obo b/src/ontology/bridge/uberon-bridge-to-spd.obo index 91d0675c4f..56eacf552a 100644 --- a/src/ontology/bridge/uberon-bridge-to-spd.obo +++ b/src/ontology/bridge/uberon-bridge-to-spd.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-spd -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-spd.owl b/src/ontology/bridge/uberon-bridge-to-spd.owl index cdc0d15681..d6f66cbb65 100644 --- a/src/ontology/bridge/uberon-bridge-to-spd.owl +++ b/src/ontology/bridge/uberon-bridge-to-spd.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-tads.obo b/src/ontology/bridge/uberon-bridge-to-tads.obo index 597dddee51..193b69bde0 100644 --- a/src/ontology/bridge/uberon-bridge-to-tads.obo +++ b/src/ontology/bridge/uberon-bridge-to-tads.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-tads -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-tads.owl b/src/ontology/bridge/uberon-bridge-to-tads.owl index fa62ecf9b7..cd4e9ffbae 100644 --- a/src/ontology/bridge/uberon-bridge-to-tads.owl +++ b/src/ontology/bridge/uberon-bridge-to-tads.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-tao.obo b/src/ontology/bridge/uberon-bridge-to-tao.obo index 6eb4cd96c4..1b44ec8303 100644 --- a/src/ontology/bridge/uberon-bridge-to-tao.obo +++ b/src/ontology/bridge/uberon-bridge-to-tao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-tao -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to tao" xsd:string property_value: dc-description "Taxonomic equivalence axioms between TAO and Uberon. Note that TAO is in the process of being merged into the core Uberon, so this mapping will become deprecated" xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-tao.owl b/src/ontology/bridge/uberon-bridge-to-tao.owl index 310a8392c3..72cb0c3a2c 100644 --- a/src/ontology/bridge/uberon-bridge-to-tao.owl +++ b/src/ontology/bridge/uberon-bridge-to-tao.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Paula Mabee Wasila Dahdul Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-tgma.obo b/src/ontology/bridge/uberon-bridge-to-tgma.obo index 8a2222d3d5..d2507d943b 100644 --- a/src/ontology/bridge/uberon-bridge-to-tgma.obo +++ b/src/ontology/bridge/uberon-bridge-to-tgma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-tgma -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-tgma.owl b/src/ontology/bridge/uberon-bridge-to-tgma.owl index 80e141f5a4..a08a56cd71 100644 --- a/src/ontology/bridge/uberon-bridge-to-tgma.owl +++ b/src/ontology/bridge/uberon-bridge-to-tgma.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-vsao.obo b/src/ontology/bridge/uberon-bridge-to-vsao.obo index 692dd5f761..c1860ce474 100644 --- a/src/ontology/bridge/uberon-bridge-to-vsao.obo +++ b/src/ontology/bridge/uberon-bridge-to-vsao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-vsao -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to vsao" xsd:string property_value: dc-description "Equivalence axioms between VSAO and Uberon. Note that VSAO is in the process of being merged into the core Uberon, so this mapping will become deprecated" xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-vsao.owl b/src/ontology/bridge/uberon-bridge-to-vsao.owl index c4765c2f02..b40ab10cf8 100644 --- a/src/ontology/bridge/uberon-bridge-to-vsao.owl +++ b/src/ontology/bridge/uberon-bridge-to-vsao.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Paula Mabee Alex Decechi Melissa Haendel diff --git a/src/ontology/bridge/uberon-bridge-to-wbbt.obo b/src/ontology/bridge/uberon-bridge-to-wbbt.obo index 3736b516f2..25131dcae9 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbbt.obo +++ b/src/ontology/bridge/uberon-bridge-to-wbbt.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-wbbt -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-wbbt.owl b/src/ontology/bridge/uberon-bridge-to-wbbt.owl index 024537cab5..f0a4b413d2 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbbt.owl +++ b/src/ontology/bridge/uberon-bridge-to-wbbt.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-wbls.obo b/src/ontology/bridge/uberon-bridge-to-wbls.obo index 4aae4e6eb6..38b0b8b0ed 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbls.obo +++ b/src/ontology/bridge/uberon-bridge-to-wbls.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-wbls -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-wbls.owl b/src/ontology/bridge/uberon-bridge-to-wbls.owl index 18446f3ad8..7ef3ed684f 100644 --- a/src/ontology/bridge/uberon-bridge-to-wbls.owl +++ b/src/ontology/bridge/uberon-bridge-to-wbls.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/bridge/uberon-bridge-to-xao.obo b/src/ontology/bridge/uberon-bridge-to-xao.obo index b79324d063..8c35d0c75a 100644 --- a/src/ontology/bridge/uberon-bridge-to-xao.obo +++ b/src/ontology/bridge/uberon-bridge-to-xao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-xao -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to xao" xsd:string property_value: dc-description "Taxonomic equivalence axioms between XAO and Uberon" xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-xao.owl b/src/ontology/bridge/uberon-bridge-to-xao.owl index 3ea80a56bc..3b8156d064 100644 --- a/src/ontology/bridge/uberon-bridge-to-xao.owl +++ b/src/ontology/bridge/uberon-bridge-to-xao.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Erik Segerdell VG Ponferrada Uberon editors diff --git a/src/ontology/bridge/uberon-bridge-to-zfa.obo b/src/ontology/bridge/uberon-bridge-to-zfa.obo index 786f02f6c7..8f91c2bc4a 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfa.obo +++ b/src/ontology/bridge/uberon-bridge-to-zfa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-zfa -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to zfa" xsd:string property_value: dc-description "Taxonomic equivalence axioms between ZFA and Uberon" xsd:string diff --git a/src/ontology/bridge/uberon-bridge-to-zfa.owl b/src/ontology/bridge/uberon-bridge-to-zfa.owl index 0f92ab5582..4e60d06b6f 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfa.owl +++ b/src/ontology/bridge/uberon-bridge-to-zfa.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Ceri Van Slyke Melissa Haendel Yvonne Bradford diff --git a/src/ontology/bridge/uberon-bridge-to-zfs.obo b/src/ontology/bridge/uberon-bridge-to-zfs.obo index adf7c25d8d..b64524292e 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfs.obo +++ b/src/ontology/bridge/uberon-bridge-to-zfs.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-zfs -data-version: 2023-05-23 +data-version: 2023-06-27 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/src/ontology/bridge/uberon-bridge-to-zfs.owl b/src/ontology/bridge/uberon-bridge-to-zfs.owl index 78175b6aea..1c5b08c813 100644 --- a/src/ontology/bridge/uberon-bridge-to-zfs.owl +++ b/src/ontology/bridge/uberon-bridge-to-zfs.owl @@ -13,7 +13,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + http://purl.obolibrary.org/obo/uberon/references/reference_0000026 diff --git a/src/ontology/components/mappings.owl b/src/ontology/components/mappings.owl index 9c6816245d..43f1b6f8dc 100644 --- a/src/ontology/components/mappings.owl +++ b/src/ontology/components/mappings.owl @@ -349,21 +349,9 @@ FBbt:00001787 - - FBbt:00001789 - FBbt:00001790 - - FBbt:00001791 - - - FBbt:00001792 - - - FBbt:00001809 - FBbt:00001842 @@ -511,6 +499,9 @@ FBbt:00004481 + + FBbt:00004482 + FBbt:00004492 diff --git a/src/ontology/diffs/uberon-diff.md b/src/ontology/diffs/uberon-diff.md index b217da1a09..770aa562dc 100644 --- a/src/ontology/diffs/uberon-diff.md +++ b/src/ontology/diffs/uberon-diff.md @@ -2,12 +2,12 @@ ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/uberon.owl` -- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2023-04-19/uberon.owl` +- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2023-05-23/uberon.owl` - Loaded from: `file:/work/src/ontology/diffs/uberon-lastbuild.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/uberon.owl` -- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2023-05-23/uberon.owl` +- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2023-06-27/uberon.owl` - Loaded from: `file:/work/src/ontology/diffs/../../../uberon.owl` ### Ontology imports @@ -16,10381 +16,13643 @@ ### Ontology annotations #### Removed -- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2023-04-19" +- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2023-05-23" #### Added -- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2023-05-23" +- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2023-06-27" -### (R)-adrenaline `http://purl.obolibrary.org/obo/CHEBI_28918` +### ({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate `http://purl.obolibrary.org/obo/CHEBI_237958` #### Added -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C9H13NO3" +- [({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate](http://purl.obolibrary.org/obo/CHEBI_237958) [label](http://www.w3.org/2000/01/rdf-schema#label) "({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [mass](http://purl.obolibrary.org/obo/chebi/mass) "183.20440" +- [({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate](http://purl.obolibrary.org/obo/CHEBI_237958) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#2_STAR) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00788" +- [({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate](http://purl.obolibrary.org/obo/CHEBI_237958) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NIST_Chemistry_WebBook" +- [({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate](http://purl.obolibrary.org/obo/CHEBI_237958) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:237958" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "epinephrinum" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" +- Class: [({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate](http://purl.obolibrary.org/obo/CHEBI_237958) - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [INN](http://purl.obolibrary.org/obo/chebi#INN) +- [({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate](http://purl.obolibrary.org/obo/CHEBI_237958) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [label](http://www.w3.org/2000/01/rdf-schema#label) "(R)-adrenaline" +- [({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate](http://purl.obolibrary.org/obo/CHEBI_237958) SubClassOf [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:28918" +- [({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate](http://purl.obolibrary.org/obo/CHEBI_237958) SubClassOf [adenosine 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37096) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:2368277" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" +- [({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate](http://purl.obolibrary.org/obo/CHEBI_237958) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [nutraceutical](http://purl.obolibrary.org/obo/CHEBI_50733) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Primatene" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [BRAND_NAME](http://purl.obolibrary.org/obo/chebi#BRAND_NAME) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" +### 1H-purine `http://purl.obolibrary.org/obo/CHEBI_35586` -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:51-43-4" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "KEGG COMPOUND" +#### Added +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "120.04360" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22905594" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "KDCGOANMDULRCW-UHFFFAOYSA-N" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KNApSAcK:C00029643" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H4N4" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21963816" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(R)-(-)-Adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adrenalin" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NIST_Chemistry_WebBook" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "c1nc2c[nH]cnc2n1" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "4-[(1R)-1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Epipen" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_DRUG" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [label](http://www.w3.org/2000/01/rdf-schema#label) "1H-purine" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [BRAND_NAME](http://purl.obolibrary.org/obo/chebi#BRAND_NAME) +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35586" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23185846" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [mass](http://purl.obolibrary.org/obo/chebi/mass) "120.11210" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(R)-(-)-Epinephrine" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Gmelin:2379911" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Gmelin" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "epinephrine" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "1H-purine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [INN](http://purl.obolibrary.org/obo/chebi#INN) +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The 1H-tautomer of purine." -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(-)-3,4-dihydroxy-alpha-((methylamino)methyl)benzyl alcohol" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NIST_Chemistry_WebBook" +- Class: [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(-)-(R)-epinephrine" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The R-enantiomer of adrenaline. It is a hormone secreted by the adrenal glands resulting in the 'fight-or-flight' response." +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) SubClassOf [purine](http://purl.obolibrary.org/obo/CHEBI_35584) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Epipen" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [BRAND_NAME](http://purl.obolibrary.org/obo/chebi#BRAND_NAME) +- [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(R)-(-)-adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +### 3H-purine `http://purl.obolibrary.org/obo/CHEBI_35588` -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "CNC[C@H](O)c1ccc(O)c(O)c1" +#### Added +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reaxys:1210196" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Reaxys" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H4N4" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22569014" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "KDCGOANMDULRCW-UHFFFAOYSA-N" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "L-Adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22115931" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [label](http://www.w3.org/2000/01/rdf-schema#label) "3H-purine" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(R)-(-)-Adnephrine" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "3H-purine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adrenalin" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_DRUG" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [BRAND_NAME](http://purl.obolibrary.org/obo/chebi#BRAND_NAME) +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Epinephrine" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:51-43-4" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "NIST Chemistry WebBook" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23130169" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:6149478" - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22826982" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:7178185" - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HMDB:HMDB0000068" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "120.04360" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:D00095" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "c1nc2cnc[nH]c2n1" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:51-43-4" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ChemIDplus" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [mass](http://purl.obolibrary.org/obo/chebi/mass) "120.11222" + +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The 3H-tautomer of purine." -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "UCTWMZQNUQWSLP-VIFPVBQESA-N" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:7296170" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "epinephrine" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [INN](http://purl.obolibrary.org/obo/chebi#INN) +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35588" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- Class: [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "4-[(1R)-1-Hydroxy-2-(methylamino)ethyl]-1,2-benzenediol" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:1942" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22940899" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22623754" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) SubClassOf [purine](http://purl.obolibrary.org/obo/CHEBI_35584) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23164182" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29438107" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +### 6-aminopurines `http://purl.obolibrary.org/obo/CHEBI_20706` -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22425731" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +#### Added +- [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:20706" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" +- [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank:DB00668" +- [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18325983" +- [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:1646334" - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22895980" +- [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:7342604" - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22405854" +- [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) [label](http://www.w3.org/2000/01/rdf-schema#label) "6-aminopurines" + +- [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18524423" - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reaxys:2368277" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Reaxys" +- [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any compound having 6-aminopurine (adenine) as part of its structure." -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:23928" +- [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "6-aminopurines" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "183.08954" +- Class: [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C9H13NO3/c1-10-5-9(13)6-2-3-7(11)8(12)4-6/h2-4,9-13H,5H2,1H3/t9-/m0/s1" +- [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) SubClassOf [aminopurine](http://purl.obolibrary.org/obo/CHEBI_22527) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22898765" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Epinephrin" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +### 7H-purine `http://purl.obolibrary.org/obo/CHEBI_17258` -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:L-EPINEPHRINE" +#### Added +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [mass](http://purl.obolibrary.org/obo/chebi/mass) "120.11222" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22429969" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:14968" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "levoepinephrine" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPHAR" +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The 7H-tautomer of purine." -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:8639" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Drug_Central:1028" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "DrugCentral" +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "120.04360" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23066296" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HMDB:HMDB0001366" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(R)-(-)-Epirenamine" +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Purine base" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Epipen JR" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [BRAND_NAME](http://purl.obolibrary.org/obo/chebi#BRAND_NAME) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H4N4" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "KDCGOANMDULRCW-UHFFFAOYSA-N" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(-)-adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPHAR" +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "epinefrina" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [label](http://www.w3.org/2000/01/rdf-schema#label) "7H-purine" + +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reaxys:3200" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Reaxys" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [INN](http://purl.obolibrary.org/obo/chebi#INN) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)" -- Class: [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:17258" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [vasodilator agent](http://purl.obolibrary.org/obo/CHEBI_35620) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Purine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [vasoconstrictor agent](http://purl.obolibrary.org/obo/CHEBI_50514) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "7H-purine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [alpha-adrenergic agonist](http://purl.obolibrary.org/obo/CHEBI_35569) + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [sympathomimetic agent](http://purl.obolibrary.org/obo/CHEBI_35524) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [mouse metabolite](http://purl.obolibrary.org/obo/CHEBI_75771) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C15587" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [hormone](http://purl.obolibrary.org/obo/CHEBI_24621) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:3200" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Gmelin:601779" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Gmelin" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [beta-adrenergic agonist](http://purl.obolibrary.org/obo/CHEBI_35522) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "c1ncc2[nH]cnc2n1" -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [adrenergic agonist](http://purl.obolibrary.org/obo/CHEBI_37886) +- Class: [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [mydriatic agent](http://purl.obolibrary.org/obo/CHEBI_50513) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) SubClassOf [purine](http://purl.obolibrary.org/obo/CHEBI_35584) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [is_enantiomer_of](http://purl.obolibrary.org/obo/chebi#is_enantiomer_of) some [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) -- [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) SubClassOf [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) +- [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) -### (R)-adrenaline(1+) `http://purl.obolibrary.org/obo/CHEBI_71406` +### 9H-purine `http://purl.obolibrary.org/obo/CHEBI_35589` #### Added -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [charge](http://purl.obolibrary.org/obo/chebi/charge) "+1" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "120.04360" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:71406" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35589" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "C[NH2+]C[C@H](O)c1ccc(O)c(O)c1" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "9H-purine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(R)-adrenaline cation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "UCTWMZQNUQWSLP-VIFPVBQESA-O" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H4N4" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "184.09682" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "9H-purine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C9H13NO3/c1-10-5-9(13)6-2-3-7(11)8(12)4-6/h2-4,9-13H,5H2,1H3/p+1/t9-/m0/s1" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:120-73-0" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "NIST Chemistry WebBook" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [label](http://www.w3.org/2000/01/rdf-schema#label) "9H-purine" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An organic cation that is the conjugate acid of (R)-adrenaline, obtained by protonation of the amino group; major species at pH 7.3." +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "L-epinephrine cation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Gmelin:3120" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Gmelin" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(R)-adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:606899" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [label](http://www.w3.org/2000/01/rdf-schema#label) "(R)-adrenaline(1+)" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [mass](http://purl.obolibrary.org/obo/chebi/mass) "184.21240" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [mass](http://purl.obolibrary.org/obo/chebi/mass) "120.11222" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "c1ncc2nc[nH]c2n1" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "L-epinephrine(1+)" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C9H14NO3" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "(2R)-2-(3,4-dihydroxyphenyl)-2-hydroxy-N-methylethanaminium" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "KDCGOANMDULRCW-UHFFFAOYSA-N" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The 9H-tautomer of purine." -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:L-EPINEPHRINE" +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Purine" -- Class: [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) +- Class: [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) SubClassOf [ammonium ion derivative](http://purl.obolibrary.org/obo/CHEBI_35274) +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [1H-purine](http://purl.obolibrary.org/obo/CHEBI_35586) -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [human metabolite](http://purl.obolibrary.org/obo/CHEBI_77746) +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [3H-purine](http://purl.obolibrary.org/obo/CHEBI_35588) -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) SubClassOf [is_tautomer_of](http://purl.obolibrary.org/obo/chebi#is_tautomer_of) some [7H-purine](http://purl.obolibrary.org/obo/CHEBI_17258) -- [(R)-adrenaline(1+)](http://purl.obolibrary.org/obo/CHEBI_71406) SubClassOf [organic cation](http://purl.obolibrary.org/obo/CHEBI_25697) +- [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) SubClassOf [purine](http://purl.obolibrary.org/obo/CHEBI_35584) -### (S)-adrenaline `http://purl.obolibrary.org/obo/CHEBI_40751` +### ADP `http://purl.obolibrary.org/obo/CHEBI_16761` #### Added -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "427.02942" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:40751" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The S-enantiomer of adrenaline." +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:40553" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C9H13NO3" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ADENOSINE-5'-DIPHOSPHATE" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PDBeChem" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PDBeChem:ALE" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:G11113" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:40743" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine 5'-(trihydrogen diphosphate)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reaxys:2938799" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "Reaxys" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "5'-adenylphosphoric acid" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "CNC[C@@H](O)c1ccc(O)c(O)c1" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13222" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PDBeChem:ADP" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [label](http://www.w3.org/2000/01/rdf-schema#label) "(S)-adrenaline" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:16295522" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(S)-4-(1-hydroxy-2-(methylamino)ethyl)pyrocatechol" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adenosine 5'-diphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(S)-(+)-adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C10H15N5O10P2" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "d-epinephrine" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADP" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "d-adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "H3adp" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(+)-adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPHAR" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "COMe:MOL000173" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "183.08954" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:22244" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C9H13NO3/c1-10-5-9(13)6-2-3-7(11)8(12)4-6/h2-4,9-13H,5H2,1H3/t9-/m1/s1" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:16761" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:30615" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "XTWYTFMLZFPYCI-KQYNXXCUSA-N" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:150-05-0" - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ChemIDplus" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [mass](http://purl.obolibrary.org/obo/chebi/mass) "183.20446" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:67722" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "(S)-adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank:DB03431" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:2938799" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:58-64-0" - [source](http://www.geneontology.org/formats/oboInOwl#source) "ChemIDplus" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "4-[(1S)-1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:2342" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:20398-34-9" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "KEGG COMPOUND" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "UCTWMZQNUQWSLP-SECBINFHSA-N" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Gmelin:88452" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Gmelin" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(+)-3,4-dihydroxy-alpha-((methylamino)methyl)benzyl alcohol" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A purine ribonucleoside 5'-diphosphate having adenine as the nucleobase." -- Class: [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [label](http://www.w3.org/2000/01/rdf-schema#label) "ADP" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) SubClassOf [is_enantiomer_of](http://purl.obolibrary.org/obo/chebi#is_enantiomer_of) some [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) SubClassOf [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:58-64-0" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "KEGG COMPOUND" -### 4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol `http://purl.obolibrary.org/obo/CHEBI_194548` +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [mass](http://purl.obolibrary.org/obo/chebi/mass) "427.20110" -#### Added -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C9H13NO3" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KNApSAcK:C00019353" -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [label](http://www.w3.org/2000/01/rdf-schema#label) "4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O" -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "CNCC(O)C1=CC(O)=C(O)C=C1" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reaxys:67722" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Reaxys" -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00008" -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A catecholamine in which the aminoethyl side-chain is hydroxy-substituted at C-1 and methylated on nitrogen." +- Class: [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C9H13NO3/c1-10-5-9(13)6-2-3-7(11)8(12)4-6/h2-4,9-13H,5H2,1H3" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "183.08954" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) SubClassOf [adenosine 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37096) -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [mass](http://purl.obolibrary.org/obo/chebi/mass) "183.207" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [human metabolite](http://purl.obolibrary.org/obo/CHEBI_77746) -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "UCTWMZQNUQWSLP-UHFFFAOYSA-N" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [fundamental metabolite](http://purl.obolibrary.org/obo/CHEBI_78675) -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" +- [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) SubClassOf [purine ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37038) - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:194548" +### ADP binding `http://purl.obolibrary.org/obo/GO_0043531` -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +#### Added +- [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to ADP, adenosine 5'-diphosphate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:jl" -- Class: [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) +- [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0043531" -- [4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol](http://purl.obolibrary.org/obo/CHEBI_194548) SubClassOf [catecholamine](http://purl.obolibrary.org/obo/CHEBI_33567) +- [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine diphosphate binding" -### B cell `http://purl.obolibrary.org/obo/CL_0000236` +- [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine 5'-diphosphate binding" -#### Added -- [B cell](http://purl.obolibrary.org/obo/CL_0000236) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) [label](http://www.w3.org/2000/01/rdf-schema#label) "ADP binding" +- Class: [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) -### BRAND_NAME `http://purl.obolibrary.org/obo/chebi#BRAND_NAME` +- [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216)) -#### Added -- AnnotationProperty: [BRAND_NAME](http://purl.obolibrary.org/obo/chebi#BRAND_NAME) +- [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) SubClassOf [anion binding](http://purl.obolibrary.org/obo/GO_0043168) -- [BRAND_NAME](http://purl.obolibrary.org/obo/chebi#BRAND_NAME) SubPropertyOf: [synonym_type_property](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) +- [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -### C1 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006469` +### ADP biosynthetic process `http://purl.obolibrary.org/obo/GO_0006172` #### Added -- [C1 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006469) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [C1 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006469) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADP biosynthesis" -### C2 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006489` +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADP formation" -#### Added -- [C2 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006489) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) [label](http://www.w3.org/2000/01/rdf-schema#label) "ADP biosynthetic process" -- [C2 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006489) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADP anabolism" +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006172" -### C3 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006488` +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of ADP, adenosine 5'-diphosphate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" -#### Added -- [C3 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006488) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADP synthesis" -- [C3 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006488) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216)) -### C4 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006490` +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -#### Added -- [C4 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006490) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) SubClassOf [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) -- [C4 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006490) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ADP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006172) SubClassOf [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) -### C5 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006491` +### ADP catabolic process `http://purl.obolibrary.org/obo/GO_0046032` #### Added -- [C5 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006491) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) [label](http://www.w3.org/2000/01/rdf-schema#label) "ADP catabolic process" + +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADP catabolism" -- [C5 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006491) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADP degradation" +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of ADP, adenosine 5'-diphosphate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -### C6 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006492` +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046032" -#### Added -- [C6 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006492) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADP breakdown" -- [C6 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006492) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- Class: [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) -### C7 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006493` +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216)) -#### Added -- [C7 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006493) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) SubClassOf [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) -- [C7 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006493) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) SubClassOf [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) +- [ADP catabolic process](http://purl.obolibrary.org/obo/GO_0046032) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -### C8 segment of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0006470` -#### Added -- [C8 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006470) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### ADP metabolic process `http://purl.obolibrary.org/obo/GO_0046031` -- [C8 segment of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0006470) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +#### Added +- [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) [label](http://www.w3.org/2000/01/rdf-schema#label) "ADP metabolic process" +- [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### CNS interneuron `http://purl.obolibrary.org/obo/CL_0000402` -#### Removed -- [CNS interneuron](http://purl.obolibrary.org/obo/CL_0000402) SubClassOf [interneuron](http://purl.obolibrary.org/obo/CL_0000099) - - [is_inferred](http://www.geneontology.org/formats/oboInOwl#is_inferred) "true" +- [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046031" -- [CNS interneuron](http://purl.obolibrary.org/obo/CL_0000402) SubClassOf [CNS neuron (sensu Vertebrata)](http://purl.obolibrary.org/obo/CL_0000117) +- [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADP metabolism" -#### Added -- [CNS interneuron](http://purl.obolibrary.org/obo/CL_0000402) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving ADP, adenosine 5'-diphosphate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [CNS interneuron](http://purl.obolibrary.org/obo/CL_0000402) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) -- [CNS interneuron](http://purl.obolibrary.org/obo/CL_0000402) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Interneurons are commonly described as being only found in the central nervous system. However, in CL we define 'interneuron' more broadly as any neuron that is neither a motor neuron nor a sensory neuron, regardless of its location, so we need this term to refer strictly to interneurons of the central nervous system." +- [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216)) -- [CNS interneuron](http://purl.obolibrary.org/obo/CL_0000402) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An interneuron that has its cell body in a central nervous system." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1016/B978-0-12-817424-1.00001-X" +- [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) SubClassOf [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) -- [CNS interneuron](http://purl.obolibrary.org/obo/CL_0000402) SubClassOf [interneuron](http://purl.obolibrary.org/obo/CL_0000099) +- [ADP metabolic process](http://purl.obolibrary.org/obo/GO_0046031) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -### Golgi disassembly `http://purl.obolibrary.org/obo/GO_0090166` +### ADP transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015217` #### Added -- [Golgi disassembly](http://purl.obolibrary.org/obo/GO_0090166) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Golgi apparatus disassembly" - +- [ADP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015217) [label](http://www.w3.org/2000/01/rdf-schema#label) "ADP transmembrane transporter activity" -### Golgi inheritance `http://purl.obolibrary.org/obo/GO_0048313` +- [ADP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015217) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015217" -#### Added -- [Golgi inheritance](http://purl.obolibrary.org/obo/GO_0048313) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Golgi apparatus inheritance" +- [ADP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015217) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- [ADP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015217) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of ADP, adenosine diphosphate, from one side of a membrane to the other." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" -### Golgi membrane `http://purl.obolibrary.org/obo/GO_0000139` +- Class: [ADP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015217) -#### Added -- [Golgi membrane](http://purl.obolibrary.org/obo/GO_0000139) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Golgi apparatus membrane" +- [ADP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015217) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216)) +- [ADP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015217) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [ADP transport](http://purl.obolibrary.org/obo/GO_0015866) -### Golgi membrane fusion `http://purl.obolibrary.org/obo/GO_0036504` +- [ADP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015217) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -#### Added -- [Golgi membrane fusion](http://purl.obolibrary.org/obo/GO_0036504) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Golgi apparatus membrane fusion" +- [ADP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015217) SubClassOf [organic anion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0008514) -### Golgi organization `http://purl.obolibrary.org/obo/GO_0007030` +### ADP transport `http://purl.obolibrary.org/obo/GO_0015866` #### Added -- [Golgi organization](http://purl.obolibrary.org/obo/GO_0007030) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Golgi apparatus organization" +- [ADP transport](http://purl.obolibrary.org/obo/GO_0015866) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015866" +- [ADP transport](http://purl.obolibrary.org/obo/GO_0015866) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### Golgi reassembly `http://purl.obolibrary.org/obo/GO_0090168` +- [ADP transport](http://purl.obolibrary.org/obo/GO_0015866) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" -#### Added -- [Golgi reassembly](http://purl.obolibrary.org/obo/GO_0090168) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Golgi apparatus reassembly" +- [ADP transport](http://purl.obolibrary.org/obo/GO_0015866) [label](http://www.w3.org/2000/01/rdf-schema#label) "ADP transport" +- Class: [ADP transport](http://purl.obolibrary.org/obo/GO_0015866) -### His-Purkinje system cell `http://purl.obolibrary.org/obo/CL_0010007` -#### Removed -- [His-Purkinje system cell](http://purl.obolibrary.org/obo/CL_0010007) SubClassOf [native cell](http://purl.obolibrary.org/obo/CL_0000003) +- [ADP transport](http://purl.obolibrary.org/obo/GO_0015866) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216)) -#### Added -- [His-Purkinje system cell](http://purl.obolibrary.org/obo/CL_0010007) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [ADP transport](http://purl.obolibrary.org/obo/GO_0015866) SubClassOf [organic anion transport](http://purl.obolibrary.org/obo/GO_0015711) +- [ADP transport](http://purl.obolibrary.org/obo/GO_0015866) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -### Leydig cell `http://purl.obolibrary.org/obo/CL_0000178` + +### ADP(2-) `http://purl.obolibrary.org/obo/CHEBI_87518` #### Added -- [Leydig cell](http://purl.obolibrary.org/obo/CL_0000178) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "5'-O-{[(hydroxyphosphinato)oxy]phosphinato}adenosine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -### Mueller cell `http://purl.obolibrary.org/obo/CL_0000636` + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -#### Added -- [Mueller cell](http://purl.obolibrary.org/obo/CL_0000636) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:87518" +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "425.01486" -### RO_0002206 `http://purl.obolibrary.org/obo/RO_0002206` +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) [IAO_0000114](http://purl.obolibrary.org/obo/IAO_0000114) [IAO_0000125](http://purl.obolibrary.org/obo/IAO_0000125) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reaxys:7558006" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Reaxys" -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "RO:0002206" +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C10H13N5O10P2" -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) [example of usage](http://purl.obolibrary.org/obo/IAO_0000112) "'neural crest cell' SubClassOf expresses some 'Wnt1 gene'" +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [label](http://www.w3.org/2000/01/rdf-schema#label) "ADP(2-)" -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process" +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/p-2/t4-,6-,7-,10-/m1/s1" -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) [shorthand](http://www.geneontology.org/formats/oboInOwl#shorthand) "expressed_in" +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "XTWYTFMLZFPYCI-KQYNXXCUSA-L" -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) [IAO_0000117](http://purl.obolibrary.org/obo/IAO_0000117) [0000-0002-6601-2165](https://orcid.org/0000-0002-6601-2165) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An organophosphate oxoanion obtained by deprotonation of two of the three diphosphate OH groups of adenosine 5'-diphosphate." -- ObjectProperty: [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [mass](http://purl.obolibrary.org/obo/chebi/mass) "425.18630" -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) InverseOf [RO_0002292](http://purl.obolibrary.org/obo/RO_0002292) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [charge](http://purl.obolibrary.org/obo/chebi/charge) "-2" -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) Domain [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) or [material entity](http://purl.obolibrary.org/obo/BFO_0000040) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP(O)([O-])=O)[C@@H](O)[C@H]1O" -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) Domain [continuant](http://purl.obolibrary.org/obo/BFO_0000002) +- Class: [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) Range [material anatomical entity](http://purl.obolibrary.org/obo/CARO_0000006) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) SubClassOf [organophosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_58945) -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) SubPropertyOf: [RO_0002330](http://purl.obolibrary.org/obo/RO_0002330) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) o [part_of](http://purl.obolibrary.org/obo/BFO_0000050) SubPropertyOf: [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) +- [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) -### RO_0002292 `http://purl.obolibrary.org/obo/RO_0002292` +### ADP(3-) `http://purl.obolibrary.org/obo/CHEBI_456216` #### Added -- [RO_0002292](http://purl.obolibrary.org/obo/RO_0002292) [IAO_0000114](http://purl.obolibrary.org/obo/IAO_0000114) [IAO_0000125](http://purl.obolibrary.org/obo/IAO_0000125) +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/p-3/t4-,6-,7-,10-/m1/s1" -- [RO_0002292](http://purl.obolibrary.org/obo/RO_0002292) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Inverse of 'expressed in'" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [RO_0002292](http://purl.obolibrary.org/obo/RO_0002292) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "RO:0002292" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [charge](http://purl.obolibrary.org/obo/chebi/charge) "-3" -- [RO_0002292](http://purl.obolibrary.org/obo/RO_0002292) [shorthand](http://www.geneontology.org/formats/oboInOwl#shorthand) "expresses" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A nucleoside 5'-diphosphate(3-) arising from deprotonation of all three diphosphate OH groups of adenosine 5'-diphosphate (ADP); major species present at pH 7.3." -- [RO_0002292](http://purl.obolibrary.org/obo/RO_0002292) [IAO_0000117](http://purl.obolibrary.org/obo/IAO_0000117) [0000-0002-6601-2165](https://orcid.org/0000-0002-6601-2165) +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "5'-O-[(phosphonatooxy)phosphinato]adenosine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- ObjectProperty: [RO_0002292](http://purl.obolibrary.org/obo/RO_0002292) +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:3783669" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" -- [RO_0002292](http://purl.obolibrary.org/obo/RO_0002292) SubPropertyOf: [RO_0002330](http://purl.obolibrary.org/obo/RO_0002330) +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "424.00759" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ADP trianion" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### RO_0002330 `http://purl.obolibrary.org/obo/RO_0002330` +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:456216" -#### Added -- [RO_0002330](http://purl.obolibrary.org/obo/RO_0002330) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "RO:0002330" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [label](http://www.w3.org/2000/01/rdf-schema#label) "ADP(3-)" -- [RO_0002330](http://purl.obolibrary.org/obo/RO_0002330) [IAO_0000117](http://purl.obolibrary.org/obo/IAO_0000117) [0000-0002-6601-2165](https://orcid.org/0000-0002-6601-2165) +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ADP" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -- [RO_0002330](http://purl.obolibrary.org/obo/RO_0002330) [shorthand](http://www.geneontology.org/formats/oboInOwl#shorthand) "genomically_related_to" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Gmelin:341336" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Gmelin" -- [RO_0002330](http://purl.obolibrary.org/obo/RO_0002330) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts." +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C10H12N5O10P2" -- [RO_0002330](http://purl.obolibrary.org/obo/RO_0002330) [curator notes](http://purl.obolibrary.org/obo/IAO_0000232) "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving the genome of an organism" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- ObjectProperty: [RO_0002330](http://purl.obolibrary.org/obo/RO_0002330) +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [mass](http://purl.obolibrary.org/obo/chebi/mass) "424.17730" -- [RO_0002330](http://purl.obolibrary.org/obo/RO_0002330) Domain [continuant](http://purl.obolibrary.org/obo/BFO_0000002) +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine 5'-diphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [RO_0002330](http://purl.obolibrary.org/obo/RO_0002330) Range [continuant](http://purl.obolibrary.org/obo/BFO_0000002) + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O" -### Schwann cell `http://purl.obolibrary.org/obo/CL_0002573` -#### Removed -- [Schwann cell](http://purl.obolibrary.org/obo/CL_0002573) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A glial cell that ensheathes axons of neuron in the peripheral nervous system and are necessary for their maintainance and function." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "XTWYTFMLZFPYCI-KQYNXXCUSA-K" -- [Schwann cell](http://purl.obolibrary.org/obo/CL_0002573) EquivalentTo [glial cell](http://purl.obolibrary.org/obo/CL_0000125) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [peripheral nervous system](http://purl.obolibrary.org/obo/UBERON_0000010)) +- Class: [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -#### Added -- [Schwann cell](http://purl.obolibrary.org/obo/CL_0002573) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "A myelinating Schwann cell wraps around a single axon. Myelination occurs in larger diameter axons, while a process called ensheathment occurs on smaller diameter axons in which a single cell wraps around multiple small, unmyelinated axons separating them with a thin layer of cytoplasm. The structure formed is called a Remak bundle." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:16807057" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [human metabolite](http://purl.obolibrary.org/obo/CHEBI_77746) -- [Schwann cell](http://purl.obolibrary.org/obo/CL_0002573) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A glial cell that myelinates or ensheathes axons in the peripheral nervous system." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:16807057" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [fundamental metabolite](http://purl.obolibrary.org/obo/CHEBI_78675) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [ADP](http://purl.obolibrary.org/obo/CHEBI_16761) + +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [ADP(2-)](http://purl.obolibrary.org/obo/CHEBI_87518) +- [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) SubClassOf [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) -### Virchow's lymph node `http://purl.obolibrary.org/obo/UBERON_8480058` + +### ATP `http://purl.obolibrary.org/obo/CHEBI_15422` #### Added -- [Virchow's lymph node](http://purl.obolibrary.org/obo/UBERON_8480058) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Lymph node that is the most proximal of the left supraclavicular lymph nodes. It receives afferent lymphatic drainage from the left head, neck, chest, abdomen, pelvis, and bilateral lower extremities, and drains into the jugulo-subclavian venous junction via the thoracic duct." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:32310560" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:56-65-5" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ChemIDplus" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:31335020" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13236" -- [Virchow's lymph node](http://purl.obolibrary.org/obo/UBERON_8480058) [label](http://www.w3.org/2000/01/rdf-schema#label) "Virchow's lymph node" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ADENOSINE-5'-TRIPHOSPHATE" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PDBeChem" -- [Virchow's lymph node](http://purl.obolibrary.org/obo/UBERON_8480058) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine 5'-(tetrahydrogen triphosphate)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [Virchow's lymph node](http://purl.obolibrary.org/obo/UBERON_8480058) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480058" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -- [Virchow's lymph node](http://purl.obolibrary.org/obo/UBERON_8480058) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [Virchow's lymph node](http://purl.obolibrary.org/obo/UBERON_8480058) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Troisier sign" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:32310560" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C10H16N5O13P3" -- [Virchow's lymph node](http://purl.obolibrary.org/obo/UBERON_8480058) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Virchow's node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:32310560" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:40938" -- [Virchow's lymph node](http://purl.obolibrary.org/obo/UBERON_8480058) [date](http://purl.org/dc/terms/date) "2023-05-11T12:23:20Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adenosine 5'-triphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- Class: [Virchow's lymph node](http://purl.obolibrary.org/obo/UBERON_8480058) +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:10841" -- [Virchow's lymph node](http://purl.obolibrary.org/obo/UBERON_8480058) SubClassOf [left supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480056) +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "H4atp" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -### _:genid2147663126 -#### Removed -- _:genid2147663126 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Epicondyle" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [label](http://www.w3.org/2000/01/rdf-schema#label) "ATP" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adenosine triphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" -### _:genid2147663127 -#### Removed -- _:genid2147663127 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:73010" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00002" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:56-65-5" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "KEGG COMPOUND" -### _:genid2147663128 -#### Removed -- _:genid2147663128 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Atlas_(anatomy)#Vertebral_foramen" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "ZKHQWZAMYRWXGA-KQYNXXCUSA-N" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:2359" -### _:genid2147663129 -#### Removed -- _:genid2147663129 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Node_of_ranvier" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PDBeChem:ATP" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:10789" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KNApSAcK:C00001491" -### _:genid2147663130 -#### Removed -- _:genid2147663130 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0003832" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:15422" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reaxys:73010" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Reaxys" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Gmelin:34857" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Gmelin" -### _:genid2147663131 -#### Removed -- _:genid2147663131 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/119" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank:DB00171" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [mass](http://purl.obolibrary.org/obo/chebi/mass) "507.18100" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HMDB:HMDB0000538" -### _:genid2147663132 -#### Removed -- _:genid2147663132 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Septum_secondum" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Drug_Central:91" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "DrugCentral" -- _:genid2147663132 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003285" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "506.99575" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ATP" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:D08646" -### _:genid2147663133 -#### Removed -- _:genid2147663133 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Patent:US3079379" -- _:genid2147663133 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Adenosine_triphosphate" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:22249" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -### _:genid2147663134 -#### Removed -- _:genid2147663134 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22622577" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An adenosine 5'-phosphate in which the 5'-phosphate is a triphosphate group. It is involved in the transportation of chemical energy during metabolic pathways." +- Class: [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [micronutrient](http://purl.obolibrary.org/obo/CHEBI_27027) -### _:genid2147663135 -#### Removed -- _:genid2147663135 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Gastric_juice" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [fundamental metabolite](http://purl.obolibrary.org/obo/CHEBI_78675) +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) SubClassOf [adenosine 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37096) +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [cofactor](http://purl.obolibrary.org/obo/CHEBI_23357) -### _:genid2147663136 -#### Removed -- _:genid2147663136 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376" +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) SubClassOf [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) +- [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [nutraceutical](http://purl.obolibrary.org/obo/CHEBI_50733) -### _:genid2147663137 -#### Removed -- _:genid2147663137 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1734" +### ATP binding `http://purl.obolibrary.org/obo/GO_0005524` +#### Added +- [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0005524" -### _:genid2147663138 -#### Removed -- _:genid2147663138 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Aquatic_predation#Lunge_feeding" +- [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-265682" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "KCNJ11 tetramer:ABCC8 tetramer binds 4xATP, closing the channel" +- [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Mg-ATP binding" +- [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) [label](http://www.w3.org/2000/01/rdf-schema#label) "ATP binding" -### _:genid2147663139 -#### Removed -- _:genid2147663139 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021729" +- [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "MgATP binding" +- [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -### _:genid2147663140 -#### Removed -- _:genid2147663140 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0064792" +- Class: [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) -- _:genid2147663140 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007733" +- [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616)) +- [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) +- [ATP binding](http://purl.obolibrary.org/obo/GO_0005524) SubClassOf [anion binding](http://purl.obolibrary.org/obo/GO_0043168) -### _:genid2147663141 -#### Removed -- _:genid2147663141 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_26" +### ATP biosynthetic process `http://purl.obolibrary.org/obo/GO_0006754` +#### Added +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ATP formation" -### _:genid2147663142 -#### Removed -- _:genid2147663142 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006754" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [label](http://www.w3.org/2000/01/rdf-schema#label) "ATP biosynthetic process" -### _:genid2147663143 -#### Removed -- _:genid2147663143 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pronucleus" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "ATP regeneration" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0006758" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -### _:genid2147663144 -#### Removed -- _:genid2147663144 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20566102" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -- _:genid2147663144 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20557782" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0006759" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ATP synthesis" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ATP anabolism" -### _:genid2147663145 -#### Removed -- _:genid2147663145 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Coat_(animal)" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ATP biosynthesis" +- Class: [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616)) -### _:genid2147663146 -#### Removed -- _:genid2147663146 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Anal_gland" +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) SubClassOf [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) +- [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) SubClassOf [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) -### _:genid2147663147 -#### Removed -- _:genid2147663147 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0089570" +### ATP hydrolysis activity `http://purl.obolibrary.org/obo/GO_0016887` +#### Added +- [ATP hydrolysis activity](http://purl.obolibrary.org/obo/GO_0016887) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [hydrogenphosphate](http://purl.obolibrary.org/obo/CHEBI_43474) -### _:genid2147663148 -#### Removed -- _:genid2147663148 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003227" +- [ATP hydrolysis activity](http://purl.obolibrary.org/obo/GO_0016887) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) +- [ATP hydrolysis activity](http://purl.obolibrary.org/obo/GO_0016887) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) +- [ATP hydrolysis activity](http://purl.obolibrary.org/obo/GO_0016887) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -### _:genid2147663149 -#### Removed -- _:genid2147663149 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0006943" +- [ATP hydrolysis activity](http://purl.obolibrary.org/obo/GO_0016887) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [water](http://purl.obolibrary.org/obo/CHEBI_15377) +### ATP metabolic process `http://purl.obolibrary.org/obo/GO_0046034` -### _:genid2147663150 -#### Removed -- _:genid2147663150 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pancreaticoduodenal_artery" +#### Added +- [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" +- [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ATP metabolism" -### _:genid2147663151 -#### Removed -- _:genid2147663151 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009994" +- [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) [label](http://www.w3.org/2000/01/rdf-schema#label) "ATP metabolic process" +- [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046034" +- Class: [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) -### _:genid2147663152 -#### Removed -- _:genid2147663152 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pterion" +- [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616)) +- [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) +- [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) SubClassOf [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) -### _:genid2147663153 -#### Removed -- _:genid2147663153 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Intermediate_filament" +### ATP transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0005347` +#### Added +- [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0005347" -### _:genid2147663154 -#### Removed -- _:genid2147663154 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +- [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" +- [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0005348" +- [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -### _:genid2147663155 -#### Removed -- _:genid2147663155 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009990" +- [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) [label](http://www.w3.org/2000/01/rdf-schema#label) "ATP transmembrane transporter activity" +- [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-9717392" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "CALHM1:CALHM3 transports ATP from the cytosol to the extracellular region" +- Class: [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) -### _:genid2147663156 -#### Removed -- _:genid2147663156 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3515562&group_id=76834&atid=994726" +- [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616)) +- [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) SubClassOf [organic anion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0008514) +- [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) -### _:genid2147663157 -#### Removed -- _:genid2147663157 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Rattlesnake#Rattle" +- [ATP transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005347) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [ATP transport](http://purl.obolibrary.org/obo/GO_0015867) +### ATP transport `http://purl.obolibrary.org/obo/GO_0015867` -### _:genid2147663158 -#### Removed -- _:genid2147663158 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://people.eku.edu/ritchisong/feather_evolution.htm" +#### Added +- [ATP transport](http://purl.obolibrary.org/obo/GO_0015867) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" +- [ATP transport](http://purl.obolibrary.org/obo/GO_0015867) [label](http://www.w3.org/2000/01/rdf-schema#label) "ATP transport" +- [ATP transport](http://purl.obolibrary.org/obo/GO_0015867) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015867" -### _:genid2147663159 -#### Removed -- _:genid2147663159 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Digestive_system_of_gastropods#Hepatopancreas" +- [ATP transport](http://purl.obolibrary.org/obo/GO_0015867) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- Class: [ATP transport](http://purl.obolibrary.org/obo/GO_0015867) +- [ATP transport](http://purl.obolibrary.org/obo/GO_0015867) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616)) -### _:genid2147663160 -#### Removed -- _:genid2147663160 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009999" +- [ATP transport](http://purl.obolibrary.org/obo/GO_0015867) SubClassOf [organic anion transport](http://purl.obolibrary.org/obo/GO_0015711) +- [ATP transport](http://purl.obolibrary.org/obo/GO_0015867) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) -### _:genid2147663161 -#### Removed -- _:genid2147663161 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009946" +### ATP(3-) `http://purl.obolibrary.org/obo/CHEBI_57299` +#### Added +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [mass](http://purl.obolibrary.org/obo/chebi/mass) "504.15720" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ribonucleoside triphosphate oxoanion that is the trianion of adenosine 5'-triphosphate arising from deprotonation of three of the four free triphosphate OH groups." -### _:genid2147663162 -#### Removed -- _:genid2147663162 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [label](http://www.w3.org/2000/01/rdf-schema#label) "ATP(3-)" -- _:genid2147663162 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/p-3/t4-,6-,7-,10-/m1/s1" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C10H13N5O13P3" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:9535056" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" -### _:genid2147663163 -#### Removed -- _:genid2147663163 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3214" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP(O)([O-])=O)[C@@H](O)[C@H]1O" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [charge](http://purl.obolibrary.org/obo/chebi/charge) "-3" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### _:genid2147663164 -#### Removed -- _:genid2147663164 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Lumbar_spinal_cord" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:57299" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "ZKHQWZAMYRWXGA-KQYNXXCUSA-K" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "503.97392" -### _:genid2147663165 -#### Removed -- _:genid2147663165 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- Class: [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) -### _:genid2147663166 -#### Removed -- _:genid2147663166 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Trapezoid_bone" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [cofactor](http://purl.obolibrary.org/obo/CHEBI_23357) +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [human metabolite](http://purl.obolibrary.org/obo/CHEBI_77746) +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [fundamental metabolite](http://purl.obolibrary.org/obo/CHEBI_78675) -### _:genid2147663167 -#### Removed -- _:genid2147663167 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Facial_skeleton" +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) SubClassOf [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate](http://purl.obolibrary.org/obo/CHEBI_237958) +- [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [ATP](http://purl.obolibrary.org/obo/CHEBI_15422) -### _:genid2147663168 -#### Removed -- _:genid2147663168 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3218" +### ATP(4-) `http://purl.obolibrary.org/obo/CHEBI_30616` +#### Added +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### _:genid2147663169 -#### Removed -- _:genid2147663169 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23027930" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C10H12N5O13P3" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "atp" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:30616" -### _:genid2147663170 -#### Removed -- _:genid2147663170 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "ZKHQWZAMYRWXGA-KQYNXXCUSA-J" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:3581767" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ATP" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -### _:genid2147663171 -#### Removed -- _:genid2147663171 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Neurofilament" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [mass](http://purl.obolibrary.org/obo/chebi/mass) "503.14946" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [charge](http://purl.obolibrary.org/obo/chebi/charge) "-4" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A nucleoside triphosphate(4-) obtained by global deprotonation of the triphosphate OH groups of ATP; major species present at pH 7.3." -### _:genid2147663172 -#### Removed -- _:genid2147663172 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021751" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine 5'-triphosphate(4-)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -### _:genid2147663173 -#### Removed -- _:genid2147663173 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0034076" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Gmelin:342798" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Gmelin" -- _:genid2147663173 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007735" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [label](http://www.w3.org/2000/01/rdf-schema#label) "ATP(4-)" -- _:genid2147663173 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007196" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/p-4/t4-,6-,7-,10-/m1/s1" -- _:genid2147663173 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0002482" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "502.96664" +- Class: [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) -### _:genid2147663174 -#### Removed -- _:genid2147663174 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://dev.biologists.org/content/128/22/4573.full" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [cofactor](http://purl.obolibrary.org/obo/CHEBI_23357) +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [human metabolite](http://purl.obolibrary.org/obo/CHEBI_77746) +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [ATP(3-)](http://purl.obolibrary.org/obo/CHEBI_57299) -### _:genid2147663175 -#### Removed -- _:genid2147663175 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Adductor_muscles_of_the_hip" +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) SubClassOf [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) +- [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [fundamental metabolite](http://purl.obolibrary.org/obo/CHEBI_78675) -### _:genid2147663176 +### ATP-dependent peptidase activity `http://purl.obolibrary.org/obo/GO_0004176` #### Removed -- _:genid2147663176 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0061249" +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0004280" +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ATP-dependent proteolysis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0004176" -### _:genid2147663177 -#### Removed -- _:genid2147663177 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3580301&group_id=76834&atid=1205376" +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the hydrolysis of peptide bonds, driven by ATP hydrolysis." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/21612"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-9698929" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "pPR-AP:pAP cleaves the MCP:pPR-AP:pAP Complex" -### _:genid2147663178 -#### Removed -- _:genid2147663178 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Persistent_left_superior_vena_cava" +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) [label](http://www.w3.org/2000/01/rdf-schema#label) "ATP-dependent peptidase activity" +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- Class: [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) -### _:genid2147663179 -#### Removed -- _:genid2147663179 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009364" +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) EquivalentTo [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) and ([has part](http://purl.obolibrary.org/obo/BFO_0000051) some [ATP hydrolysis activity](http://purl.obolibrary.org/obo/GO_0016887)) +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [ATP hydrolysis activity](http://purl.obolibrary.org/obo/GO_0016887) +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) SubClassOf [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) -### _:genid2147663180 -#### Removed -- _:genid2147663180 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/1264" +- [ATP-dependent peptidase activity](http://purl.obolibrary.org/obo/GO_0004176) SubClassOf [ATP-dependent activity](http://purl.obolibrary.org/obo/GO_0140657) -### _:genid2147663181 -#### Removed -- _:genid2147663181 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3220" +### Archaea `http://purl.obolibrary.org/obo/NCBITaxon_2157` + +#### Added +- [Archaea](http://purl.obolibrary.org/obo/NCBITaxon_2157) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36748408" +- [Archaea](http://purl.obolibrary.org/obo/NCBITaxon_2157) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:32628106" -### _:genid2147663182 +### Atg12 conjugating enzyme activity `http://purl.obolibrary.org/obo/GO_0061651` #### Removed -- _:genid2147663182 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009989" +- [Atg12 conjugating enzyme activity](http://purl.obolibrary.org/obo/GO_0061651) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "E2" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" + +- [Atg12 conjugating enzyme activity](http://purl.obolibrary.org/obo/GO_0061651) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Isoenergetic transfer of Atg12 from one protein to another via the reaction X-Atg12 + Y -> Y-Atg12 + X, where both the X-Atg12 and Y-Atg12 linkages are thioester bonds between the C-terminal amino acid of Atg12 and a sulfhydryl side group of a cysteine residue." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" +#### Added +- [Atg12 conjugating enzyme activity](http://purl.obolibrary.org/obo/GO_0061651) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Isoenergetic transfer of Atg12 from one protein to another via the reaction X-Atg12 + Y = Y-Atg12 + X, where both the X-Atg12 and Y-Atg12 linkages are thioester bonds between the C-terminal amino acid of Atg12 and a sulfhydryl side group of a cysteine residue." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" + +- [Atg12 conjugating enzyme activity](http://purl.obolibrary.org/obo/GO_0061651) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "E2" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" -### _:genid2147663183 +### Atg12 ligase activity `http://purl.obolibrary.org/obo/GO_0061660` #### Removed -- _:genid2147663183 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072166" +- [Atg12 ligase activity](http://purl.obolibrary.org/obo/GO_0061660) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "E3" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" + +- [Atg12 ligase activity](http://purl.obolibrary.org/obo/GO_0061660) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the transfer of Atg12 to a substrate protein via the reaction X-Atg12 + S --> X + S-Atg12, where X is either an E2 or E3 enzyme, the X-Atg12 linkage is a thioester bond, and the S-Atg12 linkage is an isopeptide bond between the C-terminal amino acid of Atg12 and the epsilon-amino group of lysine residues in the substrate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" + +#### Added +- [Atg12 ligase activity](http://purl.obolibrary.org/obo/GO_0061660) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "E3" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" +- [Atg12 ligase activity](http://purl.obolibrary.org/obo/GO_0061660) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the transfer of Atg12 to a substrate protein via the reaction X-Atg12 + S = X + S-Atg12, where X is either an E2 or E3 enzyme, the X-Atg12 linkage is a thioester bond, and the S-Atg12 linkage is an isopeptide bond between the C-terminal amino acid of Atg12 and the epsilon-amino group of lysine residues in the substrate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" -### _:genid2147663184 +### Atg12 transferase activity `http://purl.obolibrary.org/obo/GO_0019777` #### Removed -- _:genid2147663184 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ZFIN:cvs" +- [Atg12 transferase activity](http://purl.obolibrary.org/obo/GO_0019777) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the transfer of ATG12 from one protein to another via the reaction X-ATG12 + Y --> Y-ATG12 + X, where both X-ATG12 and Y-ATG12 are covalent linkages." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- _:genid2147663184 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:dph" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12826404" -- _:genid2147663184 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Hypoblast" +#### Added +- [Atg12 transferase activity](http://purl.obolibrary.org/obo/GO_0019777) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the transfer of ATG12 from one protein to another via the reaction X-ATG12 + Y = Y-ATG12 + X, where both X-ATG12 and Y-ATG12 are covalent linkages." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- _:genid2147663184 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/p/geneontology/ontology-requests/9676/" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12826404" +### B cell `http://purl.obolibrary.org/obo/CL_0000236` -### _:genid2147663185 -#### Removed -- _:genid2147663185 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" +#### Added +- [B cell](http://purl.obolibrary.org/obo/CL_0000236) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) +### Bacteria `http://purl.obolibrary.org/obo/NCBITaxon_2` -### _:genid2147663186 -#### Removed -- _:genid2147663186 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:Wasila" +#### Added +- [Bacteria](http://purl.obolibrary.org/obo/NCBITaxon_2) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36748408" +- [Bacteria](http://purl.obolibrary.org/obo/NCBITaxon_2) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:32628106" -### _:genid2147663187 +### Brodmann (1909) area 44 `http://purl.obolibrary.org/obo/UBERON_0006481` #### Removed -- _:genid2147663187 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021729" +- [Brodmann (1909) area 44](http://purl.obolibrary.org/obo/UBERON_0006481) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Brodmann area 44, or BA44, is part of the frontal cortex in the human brain. Situated just anterior to premotor cortex and on the lateral surface, inferior to BA9. This area is also known as pars opercularis (of the inferior frontal gyrus), and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. In the human it corresponds approximately to the opercular part of inferior frontal gyrus (H). Thus, it is bounded caudally by the inferior precentral sulcus (H) and rostrally by the anterior ascending limb of lateral sulcus (H). It surrounds the diagonal sulcus (H). In the depth of the lateral sulcus it borders on the insula. Cytoarchitectonically it is bounded caudally and dorsally by the agranular frontal area 6, dorsally by the granular frontal area 9 and rostrally by the triangular area 45 (Brodmann-1909)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_44" -- _:genid2147663187 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000021" +#### Added +- [Brodmann (1909) area 44](http://purl.obolibrary.org/obo/UBERON_0006481) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Broca's area is a region of the inferior frontal gyrus (in the dominant cerebral hemisphere, usually on the left side) that is composed of parts of Brodmanns' areas 44 and 45." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-1572-1316" +- [Brodmann (1909) area 44](http://purl.obolibrary.org/obo/UBERON_0006481) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/obophenotype/uberon/issues/2917"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### _:genid2147663188 +### CA1 field of hippocampus `http://purl.obolibrary.org/obo/UBERON_0003881` #### Removed -- _:genid2147663188 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376" +- [CA1 field of hippocampus](http://purl.obolibrary.org/obo/UBERON_0003881) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regio i hippocampi proprii" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:74042" -- _:genid2147663188 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:14595018" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [latin term](http://purl.obolibrary.org/obo/uberon/core#LATIN) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:TA" +- [CA1 field of hippocampus](http://purl.obolibrary.org/obo/UBERON_0003881) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regio i cornus ammonis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:74042" -### _:genid2147663189 -#### Removed -- _:genid2147663189 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0060682" - - - -### _:genid2147663190 -#### Removed -- _:genid2147663190 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://people.eku.edu/ritchisong/feather_evolution.htm" - + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [latin term](http://purl.obolibrary.org/obo/uberon/core#LATIN) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:TA" -### _:genid2147663191 -#### Removed -- _:genid2147663191 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:External_sphincter_muscle_of_male_urethra" - -- _:genid2147663191 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:External_sphincter_muscle_of_female_urethra" +#### Added +- [CA1 field of hippocampus](http://purl.obolibrary.org/obo/UBERON_0003881) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regio I cornus ammonis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:74042" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [latin term](http://purl.obolibrary.org/obo/uberon/core#LATIN) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:TA" -### _:genid2147663192 -#### Removed -- _:genid2147663192 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Primordial_phallus" +- [CA1 field of hippocampus](http://purl.obolibrary.org/obo/UBERON_0003881) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regio I hippocampi proprii" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:74042" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [latin term](http://purl.obolibrary.org/obo/uberon/core#LATIN) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:TA" -### _:genid2147663193 -#### Removed -- _:genid2147663193 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3221" +### CHEBI_46858 `http://purl.obolibrary.org/obo/CHEBI_46858` +#### Added +- Class: [CHEBI_46858](http://purl.obolibrary.org/obo/CHEBI_46858) -### _:genid2147663194 -#### Removed -- _:genid2147663194 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" +### CHEBI_82620 `http://purl.obolibrary.org/obo/CHEBI_82620` +#### Added +- Class: [CHEBI_82620](http://purl.obolibrary.org/obo/CHEBI_82620) -### _:genid2147663195 -#### Removed -- _:genid2147663195 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1732" +### D-ribofuranose `http://purl.obolibrary.org/obo/CHEBI_47013` +#### Added +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:1904878" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" -### _:genid2147663196 -#### Removed -- _:genid2147663196 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003291" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:46999" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [mass](http://purl.obolibrary.org/obo/chebi/mass) "150.12990" -### _:genid2147663197 -#### Removed -- _:genid2147663197 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribofuranose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:50-69-1" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "KEGG COMPOUND" -### _:genid2147663198 -#### Removed -- _:genid2147663198 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Articular" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- _:genid2147663198 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/98" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H10O5" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:4233" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "150.05282" -### _:genid2147663199 -#### Removed -- _:genid2147663199 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9506998" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:613-83-2" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ChemIDplus" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Gmelin:364108" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Gmelin" -### _:genid2147663200 -#### Removed -- _:genid2147663200 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_9" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:47013" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reaxys:1904878" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Reaxys" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(3R,4S,5R)-5-(hydroxymethyl)tetrahydrofuran-2,3,4-triol" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -### _:genid2147663201 -#### Removed -- _:genid2147663201 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Eparterial_bronchus" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [label](http://www.w3.org/2000/01/rdf-schema#label) "D-ribofuranose" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "D-Ribose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Patent:US2152662" -### _:genid2147663202 -#### Removed -- _:genid2147663202 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Temporomandibular_joint#Ligaments" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GlyGen:G31080DL" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -### _:genid2147663203 -#### Removed -- _:genid2147663203 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0000864" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00121" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "HMFHBZSHGGEWLO-SOOFDHNKSA-N" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5?/m1/s1" -### _:genid2147663204 -#### Removed -- _:genid2147663204 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Dorsal_digital_arteries#" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "OC[C@H]1OC(O)[C@H](O)[C@@H]1O" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "D-ribose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GlyTouCan:G31080DL" -### _:genid2147663205 -#### Removed -- _:genid2147663205 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ribofuranose having D-configuration." +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "WURCS=2.0/1,1,0/[a222h-1x_1-4]/1/" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GlyTouCan" +- Class: [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) -### _:genid2147663206 -#### Removed -- _:genid2147663206 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009996" +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) SubClassOf [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) +- [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) SubClassOf [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) -### _:genid2147663207 -#### Removed -- _:genid2147663207 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0005289" +### D-ribose `http://purl.obolibrary.org/obo/CHEBI_16988` +#### Added +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24404872" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribo-pentose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -### _:genid2147663208 -#### Removed -- _:genid2147663208 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23027930" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "D-Rib" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "JCBN" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -### _:genid2147663209 -#### Removed -- _:genid2147663209 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/7" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ribose in which the chiral carbon atom furthest away from the aldehyde group (C4') has the same configuration as in D-glyceraldehyde." -- _:genid2147663209 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/6" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "150.05282" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -### _:genid2147663210 -#### Removed -- _:genid2147663210 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pisiform_joint" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [label](http://www.w3.org/2000/01/rdf-schema#label) "D-ribose" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:16988" -### _:genid2147663211 -#### Removed -- _:genid2147663211 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021728" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13011" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24752650" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:21078" -### _:genid2147663212 -#### Removed -- _:genid2147663212 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H10O5" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [mass](http://purl.obolibrary.org/obo/chebi/mass) "150.12990" -### _:genid2147663213 -#### Removed -- _:genid2147663213 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Corpus_cavernosum" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank:DB01936" +- Class: [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [fundamental metabolite](http://purl.obolibrary.org/obo/CHEBI_78675) -### _:genid2147663214 -#### Removed -- _:genid2147663214 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Internal_spermatic_fascia" +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) SubClassOf [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [human metabolite](http://purl.obolibrary.org/obo/CHEBI_77746) +- [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) SubClassOf [is_enantiomer_of](http://purl.obolibrary.org/obo/chebi#is_enantiomer_of) some [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) -### _:genid2147663215 -#### Removed -- _:genid2147663215 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_28" +### D-ribose biosynthetic process `http://purl.obolibrary.org/obo/GO_0019302` +#### Added +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribose synthesis" -### _:genid2147663216 -#### Removed -- _:genid2147663216 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003226" +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribose formation" +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribose anabolism" -### _:genid2147663217 -#### Removed -- _:genid2147663217 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0061214" +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0019302" +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribose biosynthesis" +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of D-ribose, (ribo-pentose)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -### _:genid2147663218 -#### Removed -- _:genid2147663218 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0003350" +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) [label](http://www.w3.org/2000/01/rdf-schema#label) "D-ribose biosynthetic process" +- Class: [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988)) -### _:genid2147663219 -#### Removed -- _:genid2147663219 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009997" +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) SubClassOf [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) +- [D-ribose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019302) SubClassOf [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) -### _:genid2147663220 -#### Removed -- _:genid2147663220 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Common_plantar_digital_arteries" +### D-ribose catabolic process `http://purl.obolibrary.org/obo/GO_0019303` +#### Added +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0019303" -### _:genid2147663221 -#### Removed -- _:genid2147663221 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0010003" +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribose breakdown" +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) [label](http://www.w3.org/2000/01/rdf-schema#label) "D-ribose catabolic process" +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribose catabolism" -### _:genid2147663222 -#### Removed -- _:genid2147663222 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of D-ribose (ribo-pentose)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribose degradation" -### _:genid2147663223 -#### Removed -- _:genid2147663223 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072003" +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:RIBOKIN-PWY" +- Class: [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988)) -### _:genid2147663224 -#### Removed -- _:genid2147663224 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UBERON:CL_meeting_20110725" +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) -- _:genid2147663224 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html" +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) SubClassOf [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) +- [D-ribose catabolic process](http://purl.obolibrary.org/obo/GO_0019303) SubClassOf [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) -### _:genid2147663225 -#### Removed -- _:genid2147663225 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pouch_(marsupial)" +### D-ribose metabolic process `http://purl.obolibrary.org/obo/GO_0006014` +#### Added +- [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006014" +- [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) [label](http://www.w3.org/2000/01/rdf-schema#label) "D-ribose metabolic process" -### _:genid2147663226 -#### Removed -- _:genid2147663226 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Proper_plantar_digital_arteries" +- [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "D-ribose metabolism" +- [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving D-ribose (ribo-pentose). As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -### _:genid2147663227 -#### Removed -- _:genid2147663227 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009993" +- Class: [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) +- [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988)) +- [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) SubClassOf [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) -### _:genid2147663228 -#### Removed -- _:genid2147663228 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" +- [D-ribose metabolic process](http://purl.obolibrary.org/obo/GO_0006014) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) +### D-ribose transmembrane transport `http://purl.obolibrary.org/obo/GO_0015752` -### _:genid2147663229 -#### Removed -- _:genid2147663229 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009988" +#### Added +- [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) [label](http://www.w3.org/2000/01/rdf-schema#label) "D-ribose transmembrane transport" +- [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The process in which D-ribose is transported across a lipid bilayer, from one side of a membrane to the other. As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" +- [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "D-ribose transport" -### _:genid2147663230 -#### Removed -- _:genid2147663230 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EFO:0000240" +- [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015752" +- [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- Class: [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) -### _:genid2147663231 -#### Removed -- _:genid2147663231 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Flight_feather" +- [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988)) +- [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) SubClassOf [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) +- [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) -### _:genid2147663232 -#### Removed -- _:genid2147663232 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003225" +- [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) SubClassOf [results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020) +### D-ribose transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015591` -### _:genid2147663233 -#### Removed -- _:genid2147663233 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +#### Added +- [D-ribose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015591) [label](http://www.w3.org/2000/01/rdf-schema#label) "D-ribose transmembrane transporter activity" +- [D-ribose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015591) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of D-ribose from one side of a membrane to the other. As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0815340729" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mtg_transport" -### _:genid2147663234 -#### Removed -- _:genid2147663234 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Hamate_bone" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" +- [D-ribose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015591) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015591" +- [D-ribose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015591) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -### _:genid2147663235 -#### Removed -- _:genid2147663235 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Superior_olivary_complex#Dorsal_periolivary_nucleus_.28DPO.29" +- Class: [D-ribose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015591) +- [D-ribose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015591) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988)) +- [D-ribose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015591) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) -### _:genid2147663236 -#### Removed -- _:genid2147663236 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072165" +- [D-ribose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015591) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [D-ribose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015752) +- [D-ribose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015591) SubClassOf [pentose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015146) -### _:genid2147663237 +### Elasmobranchii `http://purl.obolibrary.org/obo/NCBITaxon_7778` #### Removed -- _:genid2147663237 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMCID:PMC2093943" +- [Elasmobranchii](http://purl.obolibrary.org/obo/NCBITaxon_7778) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "sharks and rays" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [blast_name](http://purl.obolibrary.org/obo/ncbitaxon#blast_name) +#### Added +- [Elasmobranchii](http://purl.obolibrary.org/obo/NCBITaxon_7778) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "sharks & rays" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [blast_name](http://purl.obolibrary.org/obo/ncbitaxon#blast_name) -### _:genid2147663238 -#### Removed -- _:genid2147663238 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Capitate_bone" +### G protein-coupled ADP receptor activity `http://purl.obolibrary.org/obo/GO_0001621` +#### Added +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0045032" -### _:genid2147663239 -#### Removed -- _:genid2147663239 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "platelet ADP receptor activity" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0001621" +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Combining with ADP and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -### _:genid2147663240 -#### Removed -- _:genid2147663240 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003224" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:signaling" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11196645" +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "ADP-activated nucleotide receptor activity" -### _:genid2147663241 -#### Removed -- _:genid2147663241 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) [label](http://www.w3.org/2000/01/rdf-schema#label) "G protein-coupled ADP receptor activity" +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "K101 receptor" +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "ADP receptor activity" -### _:genid2147663242 -#### Removed -- _:genid2147663242 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ADP-activated adenosine receptor activity" -- _:genid2147663242 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +- Class: [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) EquivalentTo [G protein-coupled receptor activity](http://purl.obolibrary.org/obo/GO_0004930) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216)) +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [ADP binding](http://purl.obolibrary.org/obo/GO_0043531) -### _:genid2147663243 -#### Removed -- _:genid2147663243 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_18" +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) SubClassOf [G protein-coupled receptor activity](http://purl.obolibrary.org/obo/GO_0004930) +- [G protein-coupled ADP receptor activity](http://purl.obolibrary.org/obo/GO_0001621) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -### _:genid2147663244 -#### Removed -- _:genid2147663244 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:alex" +### G protein-coupled ATP receptor activity `http://purl.obolibrary.org/obo/GO_0045031` +#### Added +- [G protein-coupled ATP receptor activity](http://purl.obolibrary.org/obo/GO_0045031) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- [G protein-coupled ATP receptor activity](http://purl.obolibrary.org/obo/GO_0045031) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0045031" -### _:genid2147663245 -#### Removed -- _:genid2147663245 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://orcid.org/0000-0002-6601-2165" +- [G protein-coupled ATP receptor activity](http://purl.obolibrary.org/obo/GO_0045031) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Combining with ATP and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- [G protein-coupled ATP receptor activity](http://purl.obolibrary.org/obo/GO_0045031) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ATP-activated adenosine receptor activity" +- [G protein-coupled ATP receptor activity](http://purl.obolibrary.org/obo/GO_0045031) [label](http://www.w3.org/2000/01/rdf-schema#label) "G protein-coupled ATP receptor activity" -### _:genid2147663246 -#### Removed -- _:genid2147663246 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Iris_muscle" +- [G protein-coupled ATP receptor activity](http://purl.obolibrary.org/obo/GO_0045031) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "ATP-activated nucleotide receptor activity" +- Class: [G protein-coupled ATP receptor activity](http://purl.obolibrary.org/obo/GO_0045031) +- [G protein-coupled ATP receptor activity](http://purl.obolibrary.org/obo/GO_0045031) EquivalentTo [G protein-coupled receptor activity](http://purl.obolibrary.org/obo/GO_0004930) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616)) -### _:genid2147663247 -#### Removed -- _:genid2147663247 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Snout" +- [G protein-coupled ATP receptor activity](http://purl.obolibrary.org/obo/GO_0045031) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) +- [G protein-coupled ATP receptor activity](http://purl.obolibrary.org/obo/GO_0045031) SubClassOf [G protein-coupled receptor activity](http://purl.obolibrary.org/obo/GO_0004930) -### _:genid2147663248 -#### Removed -- _:genid2147663248 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" +### G protein-coupled adenosine receptor activity `http://purl.obolibrary.org/obo/GO_0001609` +#### Added +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "A3 adenosine receptor activity, G-protein coupled" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "G protein coupled A3 adenosine receptor activity" -### _:genid2147663249 -#### Removed -- _:genid2147663249 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_39" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0001610" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0001613" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0001612" -### _:genid2147663250 -#### Removed -- _:genid2147663250 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Trapezium_(bone)" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "P1 receptor" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "A2B adenosine receptor activity, G protein coupled" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "G-protein-coupled A1 adenosine receptor activity" -### _:genid2147663251 -#### Removed -- _:genid2147663251 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Enteric_ganglia" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Combining with adenosine and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:bf" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -### _:genid2147663252 -#### Removed -- _:genid2147663252 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "A2A adenosine receptor activity, G protein coupled" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "G-protein-coupled A2B adenosine receptor activity" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "A2A adenosine receptor activity, G-protein coupled" -### _:genid2147663253 -#### Removed -- _:genid2147663253 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0001611" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "adenosine nucleotide receptor" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [label](http://www.w3.org/2000/01/rdf-schema#label) "G protein-coupled adenosine receptor activity" -### _:genid2147663254 -#### Removed -- _:genid2147663254 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/1161" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "G protein coupled A2B adenosine receptor activity" -- _:genid2147663254 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1755" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "A3 adenosine receptor activity, G protein coupled" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "A2B adenosine receptor activity, G-protein coupled" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "G protein coupled A2A adenosine receptor activity" -### _:genid2147663255 -#### Removed -- _:genid2147663255 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0010002" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "G protein coupled adenosine receptor activity" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "G protein coupled A1 adenosine receptor activity" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "G-protein-coupled A2A adenosine receptor activity" -### _:genid2147663256 -#### Removed -- _:genid2147663256 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0000606" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0008501" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "A1 adenosine receptor activity, G-protein coupled" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine receptor activity, G protein coupled" -### _:genid2147663257 -#### Removed -- _:genid2147663257 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3223" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "G-protein coupled adenosine receptor activity" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine receptor activity, G-protein coupled" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:bf" -### _:genid2147663258 -#### Removed -- _:genid2147663258 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:alex" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "A1 adenosine receptor activity, G protein coupled" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "G-protein-coupled A3 adenosine receptor activity" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0001609" -### _:genid2147663259 -#### Removed -- _:genid2147663259 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855" +- Class: [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) EquivalentTo [G protein-coupled receptor activity](http://purl.obolibrary.org/obo/GO_0004930) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335)) +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) SubClassOf [G protein-coupled receptor activity](http://purl.obolibrary.org/obo/GO_0004930) -### _:genid2147663260 -#### Removed -- _:genid2147663260 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23153189" +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) +- [G protein-coupled adenosine receptor activity](http://purl.obolibrary.org/obo/GO_0001609) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) -### _:genid2147663261 -#### Removed -- _:genid2147663261 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" +### G protein-coupled adenosine receptor signaling pathway `http://purl.obolibrary.org/obo/GO_0001973` +#### Added +- [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "adenosine receptor signaling pathway" -### _:genid2147663262 -#### Removed -- _:genid2147663262 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/mouse-anatomy-ontology/issues/56" +- [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The series of molecular signals generated as a consequence of a receptor binding to extracellular adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" +- [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "P1 receptor signaling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" +- [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine receptor signalling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -### _:genid2147663263 -#### Removed -- _:genid2147663263 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Sclera#Histology" +- [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0001973" +- [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine receptor signaling pathway, G-protein coupled" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" +- [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) [label](http://www.w3.org/2000/01/rdf-schema#label) "G protein-coupled adenosine receptor signaling pathway" -### _:genid2147663264 -#### Removed -- _:genid2147663264 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://www.embryology.ch/anglais/turinary/urinhaute03.html" +- Class: [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) +- [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) SubClassOf [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) -### _:genid2147843011 +### G protein-coupled purinergic nucleotide receptor activity `http://purl.obolibrary.org/obo/GO_0045028` #### Added -- _:genid2147843011 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Intermediate_filament" +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purinergic nucleotide receptor activity, G protein coupled" +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Combining with a purine nucleotide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -### _:genid2147843012 - -#### Added -- _:genid2147843012 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Trapezoid_bone" - + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -### _:genid2147843013 +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "G-protein coupled purinergic nucleotide receptor activity" -#### Added -- _:genid2147843013 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Node_of_ranvier" +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "G protein coupled purinergic nucleotide receptor activity" -### _:genid2147843014 +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "P2Y receptor" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -#### Added -- _:genid2147843014 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072165" +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0045028" +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purinergic nucleotide receptor activity, G-protein coupled" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:bf" -### _:genid2147843015 +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) [label](http://www.w3.org/2000/01/rdf-schema#label) "G protein-coupled purinergic nucleotide receptor activity" -#### Added -- _:genid2147843015 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://people.eku.edu/ritchisong/feather_evolution.htm" +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "P2Y" +- Class: [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) -### _:genid2147843016 +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) EquivalentTo [G protein-coupled receptor activity](http://purl.obolibrary.org/obo/GO_0004930) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395)) -#### Added -- _:genid2147843016 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Trapezium_(bone)" +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) SubClassOf [G protein-coupled receptor activity](http://purl.obolibrary.org/obo/GO_0004930) +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) SubClassOf [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) -### _:genid2147843017 +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) -#### Added -- _:genid2147843017 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009994" +- [G protein-coupled purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0045028) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) -### _:genid2147843018 +### G protein-coupled purinergic nucleotide receptor signaling pathway `http://purl.obolibrary.org/obo/GO_0035589` #### Added -- _:genid2147843018 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009364" +- [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2010-10-22T11:18:59Z" +- [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "P2Y receptor signaling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -### _:genid2147843019 - -#### Added -- _:genid2147843019 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Primordial_phallus" +- [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" +- [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) [label](http://www.w3.org/2000/01/rdf-schema#label) "G protein-coupled purinergic nucleotide receptor signaling pathway" -### _:genid2147843020 +- [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "G-protein coupled purinergic nucleotide receptor signaling pathway" -#### Added -- _:genid2147843020 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" +- [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "G-protein coupled purinergic nucleotide receptor signalling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -### _:genid2147843021 +- [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0035589" -#### Added -- _:genid2147843021 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:alex" +- [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A G protein-coupled receptor signaling pathway initiated by an extracellular purine nucleotide binding to its receptor, and ending with the regulation of a downstream cellular process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:BHF" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -### _:genid2147843022 +- Class: [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) -#### Added -- _:genid2147843022 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +- [G protein-coupled purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035589) SubClassOf [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) -### _:genid2147843023 +### G protein-coupled purinergic receptor signaling pathway `http://purl.obolibrary.org/obo/GO_0035588` #### Added -- _:genid2147843023 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Neurofilament" +- [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0035588" + +- [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "G-protein coupled purinergic receptor signalling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" -### _:genid2147843024 +- [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "G-protein coupled purinergic receptor signaling pathway" -#### Added -- _:genid2147843024 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009989" +- [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) [label](http://www.w3.org/2000/01/rdf-schema#label) "G protein-coupled purinergic receptor signaling pathway" +- [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A G protein-coupled receptor signaling pathway initiated by an extracellular purine or purine derivative binding to its receptor, and ending with the regulation of a downstream cellular process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:BHF" -### _:genid2147843025 + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -#### Added -- _:genid2147843025 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Articular" +- [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- _:genid2147843025 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/98" +- [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2010-10-22T11:11:53Z" +- Class: [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) -### _:genid2147843026 +- [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) SubClassOf [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) -#### Added -- _:genid2147843026 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" +- [G protein-coupled purinergic receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035588) SubClassOf [G protein-coupled receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0007186) -### _:genid2147843027 +### GCIs #### Added -- _:genid2147843027 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +- [organogenesis stage](http://purl.obolibrary.org/obo/UBERON_0000111) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [Tetrapoda](http://purl.obolibrary.org/obo/NCBITaxon_32523)) SubClassOf [preceded by](http://purl.obolibrary.org/obo/BFO_0000062) some [neurula stage](http://purl.obolibrary.org/obo/UBERON_0000110) -### _:genid2147843028 +### L-glutamate transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0005313` #### Added -- _:genid2147843028 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009999" +- [L-glutamate transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005313) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [L-glutamate(1-)](http://purl.obolibrary.org/obo/CHEBI_29985) -### _:genid2147843029 +### L-ribose `http://purl.obolibrary.org/obo/CHEBI_46997` #### Added -- _:genid2147843029 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://people.eku.edu/ritchisong/feather_evolution.htm" +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [mass](http://purl.obolibrary.org/obo/chebi/mass) "150.130" +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### _:genid2147843030 +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:46997" -#### Added -- _:genid2147843030 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UBERON:CL_meeting_20110725" +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H10O5" -- _:genid2147843030 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html" +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "150.05282" +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [label](http://www.w3.org/2000/01/rdf-schema#label) "L-ribose" -### _:genid2147843031 +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -#### Added -- _:genid2147843031 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009946" +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ribose in which the chiral carbon atom furthest away from the aldehyde group (C4') has the same configuration as in L-glyceraldehyde." +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "L-ribo-pentose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -### _:genid2147843032 + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -#### Added -- _:genid2147843032 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Hamate_bone" +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "L-Rib" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "JCBN" +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### _:genid2147843033 +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "L-ribose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -#### Added -- _:genid2147843033 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072166" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- Class: [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) -### _:genid2147843034 +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) SubClassOf [is_enantiomer_of](http://purl.obolibrary.org/obo/chebi#is_enantiomer_of) some [D-ribose](http://purl.obolibrary.org/obo/CHEBI_16988) -#### Added -- _:genid2147843034 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Corpus_cavernosum" +- [L-ribose](http://purl.obolibrary.org/obo/CHEBI_46997) SubClassOf [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) -### _:genid2147843035 +### N-glycosyl compound `http://purl.obolibrary.org/obo/CHEBI_21731` #### Added -- _:genid2147843035 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Gastric_juice" +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to a nitrogen atom, thus creating a C-N bond." +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:21731" -### _:genid2147843036 +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "glycosylamine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -#### Added -- _:genid2147843036 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) [label](http://www.w3.org/2000/01/rdf-schema#label) "N-glycosyl compound" -### _:genid2147843037 +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "N-glycosyl compounds" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -#### Added -- _:genid2147843037 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003291" +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "glycosylamines" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -### _:genid2147843038 +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "N-glycosides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -#### Added -- _:genid2147843038 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003226" +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "N-glycoside" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### _:genid2147843039 +- Class: [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) -#### Added -- _:genid2147843039 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/6" +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) SubClassOf [organonitrogen compound](http://purl.obolibrary.org/obo/CHEBI_35352) -- _:genid2147843039 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/7" +- [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) SubClassOf [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) -### _:genid2147843040 +### RO_0002252 `http://purl.obolibrary.org/obo/RO_0002252` #### Added -- _:genid2147843040 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003224" +- [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) [RO_0004036](http://purl.obolibrary.org/obo/RO_0004036) [part_of](http://purl.obolibrary.org/obo/BFO_0000050) +- [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "RO:0002252" -### _:genid2147843041 +- [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) [shorthand](http://www.geneontology.org/formats/oboInOwl#shorthand) "connecting_branch_of" -#### Added -- _:genid2147843041 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:dph" +- [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "b connecting-branch-of s iff b is connected to s, and there exists some tree-like structure t such that the mereological sum of b plus s is either the same as t or a branching-part-of t." -- _:genid2147843041 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ZFIN:cvs" +- [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) [see also](http://www.w3.org/2000/01/rdf-schema#seeAlso) [2212](https://github.com/obophenotype/uberon/issues/2212) -- _:genid2147843041 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Hypoblast" +- [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) [example of usage](http://purl.obolibrary.org/obo/IAO_0000112) "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is connecting branch of S, and B1-1 as a connecting branch of B1." -- _:genid2147843041 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/p/geneontology/ontology-requests/9676/" +- ObjectProperty: [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) +- [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) InverseOf [RO_0002253](http://purl.obolibrary.org/obo/RO_0002253) -### _:genid2147843042 +- [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) SubPropertyOf: [connected to](http://purl.obolibrary.org/obo/RO_0002170) -#### Added -- _:genid2147843042 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009990" +- [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) SubPropertyOf: [in branching relationship with](http://purl.obolibrary.org/obo/RO_0002375) -### _:genid2147843043 +### RO_0002253 `http://purl.obolibrary.org/obo/RO_0002253` #### Added -- _:genid2147843043 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pisiform_joint" +- [RO_0002253](http://purl.obolibrary.org/obo/RO_0002253) [shorthand](http://www.geneontology.org/formats/oboInOwl#shorthand) "has_connecting_branch" +- [RO_0002253](http://purl.obolibrary.org/obo/RO_0002253) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "inverse of connecting branch of" -### _:genid2147843044 +- [RO_0002253](http://purl.obolibrary.org/obo/RO_0002253) [RO_0004036](http://purl.obolibrary.org/obo/RO_0004036) [has part](http://purl.obolibrary.org/obo/BFO_0000051) -#### Added -- _:genid2147843044 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EFO:0000240" +- [RO_0002253](http://purl.obolibrary.org/obo/RO_0002253) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "RO:0002253" +- [RO_0002253](http://purl.obolibrary.org/obo/RO_0002253) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [defined by inverse](http://purl.obolibrary.org/obo/RO_0002259) -### _:genid2147843045 +- ObjectProperty: [RO_0002253](http://purl.obolibrary.org/obo/RO_0002253) -#### Added -- _:genid2147843045 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_9" +- [RO_0002253](http://purl.obolibrary.org/obo/RO_0002253) SubPropertyOf: [in branching relationship with](http://purl.obolibrary.org/obo/RO_0002375) -### _:genid2147843046 +### T cell `http://purl.obolibrary.org/obo/CL_0000084` #### Added -- _:genid2147843046 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_39" +- [T cell](http://purl.obolibrary.org/obo/CL_0000084) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### _:genid2147843047 +### _:genid2147663394 +#### Removed +- _:genid2147663394 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Neurofilament" -#### Added -- _:genid2147843047 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021729" -- _:genid2147843047 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000021" +### _:genid2147663395 +#### Removed +- _:genid2147663395 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Articular" -### _:genid2147843048 +- _:genid2147663395 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/98" -#### Added -- _:genid2147843048 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0005289" -### _:genid2147843049 +### _:genid2147663396 +#### Removed +- _:genid2147663396 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" -#### Added -- _:genid2147843049 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Flight_feather" -### _:genid2147843050 +### _:genid2147663397 +#### Removed +- _:genid2147663397 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Adductor_muscles_of_the_hip" -#### Added -- _:genid2147843050 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22622577" -### _:genid2147843051 +### _:genid2147663398 +#### Removed +- _:genid2147663398 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Internal_spermatic_fascia" -#### Added -- _:genid2147843051 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Capitate_bone" -### _:genid2147843052 +### _:genid2147663399 +#### Removed +- _:genid2147663399 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0003350" -#### Added -- _:genid2147843052 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" -### _:genid2147843053 +### _:genid2147663400 +#### Removed +- _:genid2147663400 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Facial_skeleton" -#### Added -- _:genid2147843053 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Digestive_system_of_gastropods#Hepatopancreas" -### _:genid2147843054 +### _:genid2147663401 +#### Removed +- _:genid2147663401 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pancreaticoduodenal_artery" -#### Added -- _:genid2147843054 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0061249" -### _:genid2147843055 +### _:genid2147663402 +#### Removed +- _:genid2147663402 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003227" -#### Added -- _:genid2147843055 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Superior_olivary_complex#Dorsal_periolivary_nucleus_.28DPO.29" -### _:genid2147843056 +### _:genid2147663403 +#### Removed +- _:genid2147663403 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3214" -#### Added -- _:genid2147843056 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pronucleus" -### _:genid2147843057 +### _:genid2147663404 +#### Removed +- _:genid2147663404 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Iris_muscle" -#### Added -- _:genid2147843057 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3580301&group_id=76834&atid=1205376" -### _:genid2147843058 +### _:genid2147663405 +#### Removed +- _:genid2147663405 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003225" -#### Added -- _:genid2147843058 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/mouse-anatomy-ontology/issues/56" -### _:genid2147843059 +### _:genid2147663406 +#### Removed +- _:genid2147663406 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -#### Added -- _:genid2147843059 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:Wasila" -### _:genid2147843060 +### _:genid2147663407 +#### Removed +- _:genid2147663407 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://dev.biologists.org/content/128/22/4573.full" -#### Added -- _:genid2147843060 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" -### _:genid2147843061 +### _:genid2147663408 +#### Removed +- _:genid2147663408 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Septum_secondum" -#### Added -- _:genid2147843061 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Enteric_ganglia" +- _:genid2147663408 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003285" -### _:genid2147843062 -#### Added -- _:genid2147843062 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Atlas_(anatomy)#Vertebral_foramen" +### _:genid2147663409 +#### Removed +- _:genid2147663409 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Snout" -### _:genid2147843063 -#### Added -- _:genid2147843063 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://orcid.org/0000-0002-6601-2165" +### _:genid2147663410 +#### Removed +- _:genid2147663410 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Persistent_left_superior_vena_cava" -### _:genid2147843064 -#### Added -- _:genid2147843064 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0000864" +### _:genid2147663411 +#### Removed +- _:genid2147663411 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pouch_(marsupial)" -### _:genid2147843065 -#### Added -- _:genid2147843065 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +### _:genid2147663412 +#### Removed +- _:genid2147663412 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/1161" +- _:genid2147663412 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1755" -### _:genid2147843066 -#### Added -- _:genid2147843066 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20566102" -- _:genid2147843066 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20557782" +### _:genid2147663413 +#### Removed +- _:genid2147663413 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Proper_plantar_digital_arteries" -### _:genid2147843067 -#### Added -- _:genid2147843067 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3220" +### _:genid2147663414 +#### Removed +- _:genid2147663414 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Anal_gland" -### _:genid2147843068 -#### Added -- _:genid2147843068 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_26" +### _:genid2147663415 +#### Removed +- _:genid2147663415 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021751" -### _:genid2147843069 -#### Added -- _:genid2147843069 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:External_sphincter_muscle_of_female_urethra" +### _:genid2147663416 +#### Removed +- _:genid2147663416 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23153189" -- _:genid2147843069 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:External_sphincter_muscle_of_male_urethra" -### _:genid2147843070 +### _:genid2147663417 +#### Removed +- _:genid2147663417 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3221" -#### Added -- _:genid2147843070 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009997" -### _:genid2147843071 +### _:genid2147663418 +#### Removed +- _:genid2147663418 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm" -#### Added -- _:genid2147843071 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1734" -### _:genid2147843072 +### _:genid2147663419 +#### Removed +- _:genid2147663419 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_18" -#### Added -- _:genid2147843072 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMCID:PMC2093943" -### _:genid2147843073 +### _:genid2147663420 +#### Removed +- _:genid2147663420 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009993" -#### Added -- _:genid2147843073 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0006943" -### _:genid2147843074 +### _:genid2147663421 +#### Removed +- _:genid2147663421 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/119" -#### Added -- _:genid2147843074 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Coat_(animal)" -### _:genid2147843075 +### _:genid2147663422 +#### Removed +- _:genid2147663422 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0006943" -#### Added -- _:genid2147843075 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009993" -### _:genid2147843076 +### _:genid2147663423 +#### Removed +- _:genid2147663423 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Coat_(animal)" -#### Added -- _:genid2147843076 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/119" -### _:genid2147843077 +### _:genid2147663424 +#### Removed +- _:genid2147663424 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -#### Added -- _:genid2147843077 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0010003" -### _:genid2147843078 +### _:genid2147663425 +#### Removed +- _:genid2147663425 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021728" -#### Added -- _:genid2147843078 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -### _:genid2147843079 +### _:genid2147663426 +#### Removed +- _:genid2147663426 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0010003" -#### Added -- _:genid2147843079 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -### _:genid2147843080 +### _:genid2147663427 +#### Removed +- _:genid2147663427 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -#### Added -- _:genid2147843080 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021728" -### _:genid2147843081 +### _:genid2147663428 +#### Removed +- _:genid2147663428 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1734" -#### Added -- _:genid2147843081 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_18" -### _:genid2147843082 +### _:genid2147663429 +#### Removed +- _:genid2147663429 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMCID:PMC2093943" -#### Added -- _:genid2147843082 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3221" -### _:genid2147843083 +### _:genid2147663430 +#### Removed +- _:genid2147663430 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" -#### Added -- _:genid2147843083 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm" -### _:genid2147843084 +### _:genid2147663431 +#### Removed +- _:genid2147663431 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0010002" -#### Added -- _:genid2147843084 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009988" -### _:genid2147843085 +### _:genid2147663432 +#### Removed +- _:genid2147663432 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" -#### Added -- _:genid2147843085 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376" -### _:genid2147843086 +### _:genid2147663433 +#### Removed +- _:genid2147663433 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021729" -#### Added -- _:genid2147843086 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Lumbar_spinal_cord" +- _:genid2147663433 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000021" -### _:genid2147843087 -#### Added -- _:genid2147843087 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021751" +### _:genid2147663434 +#### Removed +- _:genid2147663434 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_9" -### _:genid2147843088 -#### Added -- _:genid2147843088 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23153189" +### _:genid2147663435 +#### Removed +- _:genid2147663435 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/6" +- _:genid2147663435 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/7" -### _:genid2147843089 -#### Added -- _:genid2147843089 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Proper_plantar_digital_arteries" +### _:genid2147663436 +#### Removed +- _:genid2147663436 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003224" -### _:genid2147843090 -#### Added -- _:genid2147843090 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Anal_gland" +### _:genid2147663437 +#### Removed +- _:genid2147663437 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003291" -### _:genid2147843091 -#### Added -- _:genid2147843091 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3515562&group_id=76834&atid=994726" +### _:genid2147663438 +#### Removed +- _:genid2147663438 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pisiform_joint" -### _:genid2147843092 - -#### Added -- _:genid2147843092 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0000606" -### _:genid2147843093 +### _:genid2147663439 +#### Removed +- _:genid2147663439 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EFO:0000240" -#### Added -- _:genid2147843093 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855" -### _:genid2147843094 +### _:genid2147663440 +#### Removed +- _:genid2147663440 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ZFIN:cvs" -#### Added -- _:genid2147843094 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" +- _:genid2147663440 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/p/geneontology/ontology-requests/9676/" +- _:genid2147663440 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:dph" -### _:genid2147843095 +- _:genid2147663440 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Hypoblast" -#### Added -- _:genid2147843095 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Temporomandibular_joint#Ligaments" -### _:genid2147843096 +### _:genid2147663441 +#### Removed +- _:genid2147663441 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009990" -#### Added -- _:genid2147843096 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0089570" -### _:genid2147843097 +### _:genid2147663442 +#### Removed +- _:genid2147663442 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_39" -#### Added -- _:genid2147843097 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Eparterial_bronchus" -### _:genid2147843098 +### _:genid2147663443 +#### Removed +- _:genid2147663443 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" -#### Added -- _:genid2147843098 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376" -- _:genid2147843098 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:14595018" +### _:genid2147663444 +#### Removed +- _:genid2147663444 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" -### _:genid2147843099 -#### Added -- _:genid2147843099 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0061214" +### _:genid2147663445 +#### Removed +- _:genid2147663445 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Epicondyle" -### _:genid2147843100 -#### Added -- _:genid2147843100 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:alex" +### _:genid2147663446 +#### Removed +- _:genid2147663446 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -### _:genid2147843101 -#### Added -- _:genid2147843101 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Rattlesnake#Rattle" +### _:genid2147663447 +#### Removed +- _:genid2147663447 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003226" -### _:genid2147843102 -#### Added -- _:genid2147843102 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23027930" +### _:genid2147663448 +#### Removed +- _:genid2147663448 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072166" -### _:genid2147843103 -#### Added -- _:genid2147843103 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" +### _:genid2147663449 +#### Removed +- _:genid2147663449 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Corpus_cavernosum" -### _:genid2147843104 -#### Added -- _:genid2147843104 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Common_plantar_digital_arteries" +### _:genid2147663450 +#### Removed +- _:genid2147663450 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009946" -### _:genid2147843105 -#### Added -- _:genid2147843105 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" +### _:genid2147663451 +#### Removed +- _:genid2147663451 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Hamate_bone" -### _:genid2147843106 -#### Added -- _:genid2147843106 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" +### _:genid2147663452 +#### Removed +- _:genid2147663452 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Gastric_juice" -### _:genid2147843107 -#### Added -- _:genid2147843107 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072003" +### _:genid2147663453 +#### Removed +- _:genid2147663453 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:External_sphincter_muscle_of_female_urethra" -### _:genid2147843108 +- _:genid2147663453 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:External_sphincter_muscle_of_male_urethra" -#### Added -- _:genid2147843108 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0034076" -- _:genid2147843108 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007735" -- _:genid2147843108 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0002482" +### _:genid2147663454 +#### Removed +- _:genid2147663454 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20566102" -- _:genid2147843108 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007196" +- _:genid2147663454 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20557782" -### _:genid2147843109 -#### Added -- _:genid2147843109 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Epicondyle" +### _:genid2147663455 +#### Removed +- _:genid2147663455 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3220" -### _:genid2147843110 -#### Added -- _:genid2147843110 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +### _:genid2147663456 +#### Removed +- _:genid2147663456 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Enteric_ganglia" -### _:genid2147843111 -#### Added -- _:genid2147843111 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1732" +### _:genid2147663457 +#### Removed +- _:genid2147663457 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:Wasila" -### _:genid2147843112 -#### Added -- _:genid2147843112 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007733" +### _:genid2147663458 +#### Removed +- _:genid2147663458 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" -- _:genid2147843112 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0064792" -### _:genid2147843113 +### _:genid2147663459 +#### Removed +- _:genid2147663459 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Digestive_system_of_gastropods#Hepatopancreas" -#### Added -- _:genid2147843113 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Dorsal_digital_arteries#" -### _:genid2147843114 +### _:genid2147663460 +#### Removed +- _:genid2147663460 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Atlas_(anatomy)#Vertebral_foramen" -#### Added -- _:genid2147843114 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021729" -### _:genid2147843115 +### _:genid2147663461 +#### Removed +- _:genid2147663461 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://orcid.org/0000-0002-6601-2165" -#### Added -- _:genid2147843115 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0003832" -### _:genid2147843116 +### _:genid2147663462 +#### Removed +- _:genid2147663462 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_26" -#### Added -- _:genid2147843116 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009996" -### _:genid2147843117 +### _:genid2147663463 +#### Removed +- _:genid2147663463 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/mouse-anatomy-ontology/issues/56" -#### Added -- _:genid2147843117 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -### _:genid2147843118 +### _:genid2147663464 +#### Removed +- _:genid2147663464 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Superior_olivary_complex#Dorsal_periolivary_nucleus_.28DPO.29" -#### Added -- _:genid2147843118 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -- _:genid2147843118 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +### _:genid2147663465 +#### Removed +- _:genid2147663465 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pronucleus" -### _:genid2147843119 -#### Added -- _:genid2147843119 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23027930" +### _:genid2147663466 +#### Removed +- _:genid2147663466 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22622577" -### _:genid2147843120 -#### Added -- _:genid2147843120 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_28" +### _:genid2147663467 +#### Removed +- _:genid2147663467 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0005289" -### _:genid2147843121 -#### Added -- _:genid2147843121 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pterion" +### _:genid2147663468 +#### Removed +- _:genid2147663468 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Flight_feather" -### _:genid2147843122 -#### Added -- _:genid2147843122 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -- _:genid2147843122 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +### _:genid2147663469 +#### Removed +- _:genid2147663469 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0061249" -### _:genid2147843123 -#### Added -- _:genid2147843123 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3218" +### _:genid2147663470 +#### Removed +- _:genid2147663470 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Capitate_bone" -### _:genid2147843124 -#### Added -- _:genid2147843124 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3223" +### _:genid2147663471 +#### Removed +- _:genid2147663471 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" -### _:genid2147843125 -#### Added -- _:genid2147843125 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0060682" +### _:genid2147663472 +#### Removed +- _:genid2147663472 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3580301&group_id=76834&atid=1205376" -### _:genid2147843126 -#### Added -- _:genid2147843126 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://www.embryology.ch/anglais/turinary/urinhaute03.html" +### _:genid2147663473 +#### Removed +- _:genid2147663473 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Aquatic_predation#Lunge_feeding" -### _:genid2147843127 -#### Added -- _:genid2147843127 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/1264" +### _:genid2147663474 +#### Removed +- _:genid2147663474 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/1264" -### _:genid2147843128 -#### Added -- _:genid2147843128 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Sclera#Histology" +### _:genid2147663475 +#### Removed +- _:genid2147663475 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Sclera#Histology" -### _:genid2147843129 -#### Added -- _:genid2147843129 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +### _:genid2147663476 +#### Removed +- _:genid2147663476 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -- _:genid2147843129 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +- _:genid2147663476 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -### _:genid2147843130 -#### Added -- _:genid2147843130 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Aquatic_predation#Lunge_feeding" +### _:genid2147663477 +#### Removed +- _:genid2147663477 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3218" -### _:genid2147843131 -#### Added -- _:genid2147843131 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" +### _:genid2147663478 +#### Removed +- _:genid2147663478 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pterion" -### _:genid2147843132 -#### Added -- _:genid2147843132 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Adductor_muscles_of_the_hip" +### _:genid2147663479 +#### Removed +- _:genid2147663479 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0003832" -### _:genid2147843133 -#### Added -- _:genid2147843133 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Internal_spermatic_fascia" +### _:genid2147663480 +#### Removed +- _:genid2147663480 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009996" -### _:genid2147843134 -#### Added -- _:genid2147843134 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0003350" +### _:genid2147663481 +#### Removed +- _:genid2147663481 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +- _:genid2147663481 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -### _:genid2147843135 -#### Added -- _:genid2147843135 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" +### _:genid2147663482 +#### Removed +- _:genid2147663482 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Dorsal_digital_arteries#" -### _:genid2147843136 -#### Added -- _:genid2147843136 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0010002" +### _:genid2147663483 +#### Removed +- _:genid2147663483 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_28" -### _:genid2147843137 -#### Added -- _:genid2147843137 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Facial_skeleton" +### _:genid2147663484 +#### Removed +- _:genid2147663484 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -### _:genid2147843138 -#### Added -- _:genid2147843138 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pancreaticoduodenal_artery" +### _:genid2147663485 +#### Removed +- _:genid2147663485 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -### _:genid2147843139 +- _:genid2147663485 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -#### Added -- _:genid2147843139 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003227" -### _:genid2147843140 +### _:genid2147663486 +#### Removed +- _:genid2147663486 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1732" -#### Added -- _:genid2147843140 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3214" -### _:genid2147843141 +### _:genid2147663487 +#### Removed +- _:genid2147663487 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0064792" -#### Added -- _:genid2147843141 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/1161" +- _:genid2147663487 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007733" -- _:genid2147843141 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1755" -### _:genid2147843142 +### _:genid2147663488 +#### Removed +- _:genid2147663488 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009997" -#### Added -- _:genid2147843142 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://dev.biologists.org/content/128/22/4573.full" -### _:genid2147843143 +### _:genid2147663489 +#### Removed +- _:genid2147663489 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0000864" -#### Added -- _:genid2147843143 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Septum_secondum" -- _:genid2147843143 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003285" +### _:genid2147663490 +#### Removed +- _:genid2147663490 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -### _:genid2147843144 -#### Added -- _:genid2147843144 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Snout" +### _:genid2147663491 +#### Removed +- _:genid2147663491 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021729" -### _:genid2147843145 -#### Added -- _:genid2147843145 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Iris_muscle" +### _:genid2147663492 +#### Removed +- _:genid2147663492 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23027930" -### _:genid2147843146 -#### Added -- _:genid2147843146 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003225" +### _:genid2147663493 +#### Removed +- _:genid2147663493 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009989" -### _:genid2147843147 -#### Added -- _:genid2147843147 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +### _:genid2147663494 +#### Removed +- _:genid2147663494 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://people.eku.edu/ritchisong/feather_evolution.htm" -### _:genid2147843148 -#### Added -- _:genid2147843148 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Persistent_left_superior_vena_cava" +### _:genid2147663495 +#### Removed +- _:genid2147663495 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UBERON:CL_meeting_20110725" -### _:genid2147843149 +- _:genid2147663495 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html" -#### Added -- _:genid2147843149 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pouch_(marsupial)" -### abdominal external oblique muscle `http://purl.obolibrary.org/obo/UBERON_0005442` +### _:genid2147663496 +#### Removed +- _:genid2147663496 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -#### Added -- [abdominal external oblique muscle](http://purl.obolibrary.org/obo/UBERON_0005442) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [abdominal external oblique muscle](http://purl.obolibrary.org/obo/UBERON_0005442) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### _:genid2147663497 +#### Removed +- _:genid2147663497 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009999" -### abductor hallucis muscle `http://purl.obolibrary.org/obo/UBERON_0008464` -#### Added -- [abductor hallucis muscle](http://purl.obolibrary.org/obo/UBERON_0008464) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [abductor hallucis muscle](http://purl.obolibrary.org/obo/UBERON_0008464) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663498 +#### Removed +- _:genid2147663498 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:alex" -### abductor pollicis brevis muscle `http://purl.obolibrary.org/obo/UBERON_0008465` -#### Added -- [abductor pollicis brevis muscle](http://purl.obolibrary.org/obo/UBERON_0008465) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663499 +#### Removed +- _:genid2147663499 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -- [abductor pollicis brevis muscle](http://purl.obolibrary.org/obo/UBERON_0008465) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### acetylcholine uptake `http://purl.obolibrary.org/obo/GO_0051630` +### _:genid2147663500 #### Removed -- [acetylcholine uptake](http://purl.obolibrary.org/obo/GO_0051630) SubClassOf [import into cell](http://purl.obolibrary.org/obo/GO_0098657) +- _:genid2147663500 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" -### actin-mediated cell contraction `http://purl.obolibrary.org/obo/GO_0070252` +### _:genid2147663501 #### Removed -- [actin-mediated cell contraction](http://purl.obolibrary.org/obo/GO_0070252) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" - -- [actin-mediated cell contraction](http://purl.obolibrary.org/obo/GO_0070252) [label](http://www.w3.org/2000/01/rdf-schema#label) "actin-mediated cell contraction" +- _:genid2147663501 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072165" -- [actin-mediated cell contraction](http://purl.obolibrary.org/obo/GO_0070252) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0070252" -- [actin-mediated cell contraction](http://purl.obolibrary.org/obo/GO_0070252) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The actin filament-based process in which cytoplasmic actin filaments slide past one another resulting in contraction of all or part of the cell body." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- Class: [actin-mediated cell contraction](http://purl.obolibrary.org/obo/GO_0070252) +### _:genid2147663502 +#### Removed +- _:genid2147663502 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://people.eku.edu/ritchisong/feather_evolution.htm" -- [actin-mediated cell contraction](http://purl.obolibrary.org/obo/GO_0070252) SubClassOf [actin filament-based movement](http://purl.obolibrary.org/obo/GO_0030048) +### _:genid2147663503 +#### Removed +- _:genid2147663503 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Trapezoid_bone" -### adductor brevis `http://purl.obolibrary.org/obo/UBERON_0000368` -#### Added -- [adductor brevis](http://purl.obolibrary.org/obo/UBERON_0000368) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [adductor brevis](http://purl.obolibrary.org/obo/UBERON_0000368) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663504 +#### Removed +- _:genid2147663504 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Node_of_ranvier" -### adductor hallucis muscle `http://purl.obolibrary.org/obo/UBERON_0014379` -#### Added -- [adductor hallucis muscle](http://purl.obolibrary.org/obo/UBERON_0014379) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663505 +#### Removed +- _:genid2147663505 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009364" -- [adductor hallucis muscle](http://purl.obolibrary.org/obo/UBERON_0014379) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### adductor longus `http://purl.obolibrary.org/obo/UBERON_0000303` +### _:genid2147663506 +#### Removed +- _:genid2147663506 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Primordial_phallus" -#### Added -- [adductor longus](http://purl.obolibrary.org/obo/UBERON_0000303) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [adductor longus](http://purl.obolibrary.org/obo/UBERON_0000303) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663507 +#### Removed +- _:genid2147663507 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Trapezium_(bone)" -### adductor magnus `http://purl.obolibrary.org/obo/UBERON_0000370` -#### Added -- [adductor magnus](http://purl.obolibrary.org/obo/UBERON_0000370) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [adductor magnus](http://purl.obolibrary.org/obo/UBERON_0000370) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### _:genid2147663508 +#### Removed +- _:genid2147663508 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009994" -### adductor pollicis muscle `http://purl.obolibrary.org/obo/UBERON_0002962` -#### Added -- [adductor pollicis muscle](http://purl.obolibrary.org/obo/UBERON_0002962) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### _:genid2147663509 +#### Removed +- _:genid2147663509 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Intermediate_filament" -- [adductor pollicis muscle](http://purl.obolibrary.org/obo/UBERON_0002962) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### adrenaline `http://purl.obolibrary.org/obo/CHEBI_33568` +### _:genid2147663510 #### Removed -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [mass](http://purl.obolibrary.org/obo/chebi/mass) "183.20446" +- _:genid2147663510 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://www.embryology.ch/anglais/turinary/urinhaute03.html" -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A catecholamine in which the aminoethyl side-chain is hydroxy-substituted at C-1 and methylated on nitrogen." - -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "UCTWMZQNUQWSLP-UHFFFAOYSA-N" +### _:genid2147663511 +#### Removed +- _:genid2147663511 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3223" -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "CNCC(O)c1ccc(O)c(O)c1" -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C9H13NO3/c1-10-5-9(13)6-2-3-7(11)8(12)4-6/h2-4,9-13H,5H2,1H3" -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) SubClassOf [catecholamine](http://purl.obolibrary.org/obo/CHEBI_33567) +### _:genid2147663512 +#### Removed +- _:genid2147663512 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0060682" -#### Added -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "rac-4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A racemate comprising equimolar amounts of (R)-adrenaline and (S)-adrenaline." +### _:genid2147663513 +#### Removed +- _:genid2147663513 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Temporomandibular_joint#Ligaments" -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "rac-adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [mass](http://purl.obolibrary.org/obo/chebi/mass) "183.207" -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "racemic adrenaline" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +### _:genid2147663514 +#### Removed +- _:genid2147663514 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0089570" -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [(R)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_28918) -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) SubClassOf [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) -- [adrenaline](http://purl.obolibrary.org/obo/CHEBI_33568) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [(S)-adrenaline](http://purl.obolibrary.org/obo/CHEBI_40751) +### _:genid2147663515 +#### Removed +- _:genid2147663515 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0061214" -### alveolar process of maxilla `http://purl.obolibrary.org/obo/UBERON_0004527` -#### Added -- [alveolar process of maxilla](http://purl.obolibrary.org/obo/UBERON_0004527) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663516 +#### Removed +- _:genid2147663516 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072003" -- [alveolar process of maxilla](http://purl.obolibrary.org/obo/UBERON_0004527) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### alveolar sac `http://purl.obolibrary.org/obo/UBERON_0002169` +### _:genid2147663517 +#### Removed +- _:genid2147663517 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0034076" -#### Added -- [alveolar sac](http://purl.obolibrary.org/obo/UBERON_0002169) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [alveolus of lung](http://purl.obolibrary.org/obo/UBERON_0002299) +- _:genid2147663517 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007735" +- _:genid2147663517 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0002482" -### alveolus of lung `http://purl.obolibrary.org/obo/UBERON_0002299` -#### Removed -- [alveolus of lung](http://purl.obolibrary.org/obo/UBERON_0002299) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [alveolar sac](http://purl.obolibrary.org/obo/UBERON_0002169) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "FMA" +- _:genid2147663517 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007196" -#### Added -- [alveolus of lung](http://purl.obolibrary.org/obo/UBERON_0002299) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [pulmonary acinus](http://purl.obolibrary.org/obo/UBERON_0008874) -### amacrine cell `http://purl.obolibrary.org/obo/CL_0000561` +### _:genid2147663518 +#### Removed +- _:genid2147663518 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" -#### Added -- [amacrine cell](http://purl.obolibrary.org/obo/CL_0000561) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) -### amygdala excitatory neuron `http://purl.obolibrary.org/obo/CL_4023039` +### _:genid2147663519 #### Removed -- [amygdala excitatory neuron](http://purl.obolibrary.org/obo/CL_4023039) [label](http://www.w3.org/2000/01/rdf-schema#label) "amgydala excitatory neuron" +- _:genid2147663519 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Common_plantar_digital_arteries" -#### Added -- [amygdala excitatory neuron](http://purl.obolibrary.org/obo/CL_4023039) [label](http://www.w3.org/2000/01/rdf-schema#label) "amygdala excitatory neuron" -- [amygdala excitatory neuron](http://purl.obolibrary.org/obo/CL_4023039) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [amygdala excitatory neuron](http://purl.obolibrary.org/obo/CL_4023039) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### _:genid2147663520 +#### Removed +- _:genid2147663520 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Rattlesnake#Rattle" -### anconeus muscle `http://purl.obolibrary.org/obo/UBERON_0002989` -#### Added -- [anconeus muscle](http://purl.obolibrary.org/obo/UBERON_0002989) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663521 +#### Removed +- _:genid2147663521 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23027930" -- [anconeus muscle](http://purl.obolibrary.org/obo/UBERON_0002989) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### angioblastic mesenchymal cell `http://purl.obolibrary.org/obo/CL_0000566` +### _:genid2147663522 +#### Removed +- _:genid2147663522 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" -#### Added -- [angioblastic mesenchymal cell](http://purl.obolibrary.org/obo/CL_0000566) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [angioblastic mesenchymal cell](http://purl.obolibrary.org/obo/CL_0000566) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663523 +#### Removed +- _:genid2147663523 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009988" -### anterior abdominal wall muscle `http://purl.obolibrary.org/obo/UBERON_0002461` -#### Added -- [anterior abdominal wall muscle](http://purl.obolibrary.org/obo/UBERON_0002461) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [anterior abdominal wall muscle](http://purl.obolibrary.org/obo/UBERON_0002461) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663524 +#### Removed +- _:genid2147663524 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376" -### anterior digastric muscle `http://purl.obolibrary.org/obo/UBERON_0010943` -#### Added -- [anterior digastric muscle](http://purl.obolibrary.org/obo/UBERON_0010943) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663525 +#### Removed +- _:genid2147663525 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:alex" -- [anterior digastric muscle](http://purl.obolibrary.org/obo/UBERON_0010943) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### anterior nasal spine of maxilla `http://purl.obolibrary.org/obo/UBERON_0035139` +### _:genid2147663526 +#### Removed +- _:genid2147663526 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Eparterial_bronchus" -#### Added -- [anterior nasal spine of maxilla](http://purl.obolibrary.org/obo/UBERON_0035139) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [anterior nasal spine of maxilla](http://purl.obolibrary.org/obo/UBERON_0035139) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147663527 +#### Removed +- _:genid2147663527 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376" -### anterior sector of right lobe of liver `http://purl.obolibrary.org/obo/UBERON_8600016` +- _:genid2147663527 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:14595018" -#### Added -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) [label](http://www.w3.org/2000/01/rdf-schema#label) "anterior sector of right lobe of liver" -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600016" -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The anterior sector of the right lobe of the liver." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30992874" +### _:genid2147663528 +#### Removed +- _:genid2147663528 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855" -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "liver right medial lobe" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-6443-9376" -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "medial sector of right lobe of liver" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24453062" +### _:genid2147663529 +#### Removed +- _:genid2147663529 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "right hepatic anterior sector" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30487943" -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) [date](http://purl.org/dc/terms/date) "2023-05-15T10:52:39Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +### _:genid2147663530 +#### Removed +- _:genid2147663530 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3515562&group_id=76834&atid=994726" -- Class: [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) SubClassOf [anatomical entity](http://purl.obolibrary.org/obo/CARO_0000000) -- [anterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600016) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [right lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001114) +### _:genid2147663531 +#### Removed +- _:genid2147663531 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0000606" -### anterolateral ligament of knee `http://purl.obolibrary.org/obo/UBERON_0014899` -#### Added -- [anterolateral ligament of knee](http://purl.obolibrary.org/obo/UBERON_0014899) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### _:genid2147663532 +#### Removed +- _:genid2147663532 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Lumbar_spinal_cord" -- [anterolateral ligament of knee](http://purl.obolibrary.org/obo/UBERON_0014899) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### apex of cervical spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0014622` +### _:genid2147845005 #### Added -- [apex of cervical spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014622) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845005 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021729" -- [apex of cervical spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014622) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845005 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000021" -### apex of lumbar spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0014632` +### _:genid2147845006 #### Added -- [apex of lumbar spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014632) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845006 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/119" -- [apex of lumbar spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014632) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### apex of thoracic spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0014611` +### _:genid2147845007 #### Added -- [apex of thoracic spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014611) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [apex of thoracic spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014611) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845007 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009994" -### appendicular skeleton `http://purl.obolibrary.org/obo/UBERON_0002091` +### _:genid2147845008 #### Added -- [appendicular skeleton](http://purl.obolibrary.org/obo/UBERON_0002091) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845008 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -- [appendicular skeleton](http://purl.obolibrary.org/obo/UBERON_0002091) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### arm bone `http://purl.obolibrary.org/obo/UBERON_0003460` +### _:genid2147845009 #### Added -- [arm bone](http://purl.obolibrary.org/obo/UBERON_0003460) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [arm bone](http://purl.obolibrary.org/obo/UBERON_0003460) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845009 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Eparterial_bronchus" -### articular chondrocyte `http://purl.obolibrary.org/obo/CL_1001607` -#### Removed -- [articular chondrocyte](http://purl.obolibrary.org/obo/CL_1001607) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [articular chondrocyte](http://purl.obolibrary.org/obo/CL_1001607) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147845010 +#### Added +- _:genid2147845010 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" -### astrocyte `http://purl.obolibrary.org/obo/CL_0000127` +### _:genid2147845011 #### Added -- [astrocyte](http://purl.obolibrary.org/obo/CL_0000127) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [astrocyte](http://purl.obolibrary.org/obo/CL_0000127) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845011 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Temporomandibular_joint#Ligaments" -### astrocyte of the cerebral cortex `http://purl.obolibrary.org/obo/CL_0002605` +### _:genid2147845012 #### Added -- [astrocyte of the cerebral cortex](http://purl.obolibrary.org/obo/CL_0002605) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845012 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Primordial_phallus" -- [astrocyte of the cerebral cortex](http://purl.obolibrary.org/obo/CL_0002605) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### astrocyte of the forebrain `http://purl.obolibrary.org/obo/CL_0012000` +### _:genid2147845013 #### Added -- [astrocyte of the forebrain](http://purl.obolibrary.org/obo/CL_0012000) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [astrocyte of the forebrain](http://purl.obolibrary.org/obo/CL_0012000) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845013 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3515562&group_id=76834&atid=994726" -### axial skeleton plus cranial skeleton `http://purl.obolibrary.org/obo/UBERON_0005944` +### _:genid2147845014 #### Added -- [axial skeleton plus cranial skeleton](http://purl.obolibrary.org/obo/UBERON_0005944) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845014 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Capitate_bone" -- [axial skeleton plus cranial skeleton](http://purl.obolibrary.org/obo/UBERON_0005944) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### biceps femoris `http://purl.obolibrary.org/obo/UBERON_0001374` +### _:genid2147845015 #### Added -- [biceps femoris](http://purl.obolibrary.org/obo/UBERON_0001374) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [biceps femoris](http://purl.obolibrary.org/obo/UBERON_0001374) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845015 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021729" -### blood lymphocyte `http://purl.obolibrary.org/obo/CL_4030029` +### _:genid2147845016 #### Added -- [blood lymphocyte](http://purl.obolibrary.org/obo/CL_4030029) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- _:genid2147845016 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009999" -### blood_and_immune_upper_slim `http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim` +### _:genid2147845017 #### Added -- AnnotationProperty: [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- _:genid2147845017 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Intermediate_filament" -- [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) SubPropertyOf: [subset_property](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) - -### body of mandible `http://purl.obolibrary.org/obo/UBERON_0011309` +### _:genid2147845018 #### Added -- [body of mandible](http://purl.obolibrary.org/obo/UBERON_0011309) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [body of mandible](http://purl.obolibrary.org/obo/UBERON_0011309) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845018 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0010002" -### bone cell `http://purl.obolibrary.org/obo/CL_0001035` +### _:genid2147845019 #### Added -- [bone cell](http://purl.obolibrary.org/obo/CL_0001035) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [bone cell](http://purl.obolibrary.org/obo/CL_0001035) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845019 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0061214" -### brachialis muscle `http://purl.obolibrary.org/obo/UBERON_0001506` +### _:genid2147845020 #### Added -- [brachialis muscle](http://purl.obolibrary.org/obo/UBERON_0001506) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845020 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021728" -- [brachialis muscle](http://purl.obolibrary.org/obo/UBERON_0001506) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### brachioradialis `http://purl.obolibrary.org/obo/UBERON_0011011` +### _:genid2147845021 #### Added -- [brachioradialis](http://purl.obolibrary.org/obo/UBERON_0011011) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [brachioradialis](http://purl.obolibrary.org/obo/UBERON_0011011) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845021 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Epicondyle" -### brain vascular cell `http://purl.obolibrary.org/obo/CL_4023072` +### _:genid2147845022 #### Added -- [brain vascular cell](http://purl.obolibrary.org/obo/CL_4023072) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845022 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0005289" -- [brain vascular cell](http://purl.obolibrary.org/obo/CL_4023072) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### bronchial submucosal gland ciliated duct `http://purl.obolibrary.org/obo/UBERON_8600010` +### _:genid2147845023 #### Added -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) [label](http://www.w3.org/2000/01/rdf-schema#label) "bronchial submucosal gland ciliated duct" +- _:genid2147845023 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0061249" + -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-9185-3994](https://orcid.org/0000-0002-9185-3994) +### _:genid2147845024 -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) [date](http://purl.org/dc/terms/date) "2023-05-02T08:07:56Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +#### Added +- _:genid2147845024 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3580301&group_id=76834&atid=1205376" -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600010" +### _:genid2147845025 -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ciliated duct part of a bronchial submucosal gland." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30864819" +#### Added +- _:genid2147845025 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Aquatic_predation#Lunge_feeding" -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -- Class: [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) +### _:genid2147845026 -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) EquivalentTo [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [bronchus submucosal gland](http://purl.obolibrary.org/obo/UBERON_8410043)) +#### Added +- _:genid2147845026 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072003" -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) SubClassOf [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [bronchus submucosal gland](http://purl.obolibrary.org/obo/UBERON_8410043) +### _:genid2147845027 -- [bronchial submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600010) SubClassOf [endoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004119) +#### Added +- _:genid2147845027 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855" -### bronchiolar smooth muscle cell `http://purl.obolibrary.org/obo/CL_4033017` +### _:genid2147845028 #### Added -- [bronchiolar smooth muscle cell](http://purl.obolibrary.org/obo/CL_4033017) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845028 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pancreaticoduodenal_artery" -- [bronchiolar smooth muscle cell](http://purl.obolibrary.org/obo/CL_4033017) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### bronchodilator agent `http://purl.obolibrary.org/obo/CHEBI_35523` +### _:genid2147845029 #### Added -- [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- _:genid2147845029 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Flight_feather" -- [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "bronchodilator" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +### _:genid2147845030 -- [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "broncholytic agent" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +#### Added +- _:genid2147845030 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/1264" -- [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35523" -- [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An agent that causes an increase in the expansion of a bronchus or bronchial tubes." +### _:genid2147845031 -- [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) [label](http://www.w3.org/2000/01/rdf-schema#label) "bronchodilator agent" +#### Added +- _:genid2147845031 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMCID:PMC2093943" -- [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "bronchodilator agents" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- Class: [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) +### _:genid2147845032 -- [bronchodilator agent](http://purl.obolibrary.org/obo/CHEBI_35523) SubClassOf [drug](http://purl.obolibrary.org/obo/CHEBI_23888) +#### Added +- _:genid2147845032 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://people.eku.edu/ritchisong/feather_evolution.htm" -### buccinator muscle `http://purl.obolibrary.org/obo/UBERON_0001582` +### _:genid2147845033 #### Added -- [buccinator muscle](http://purl.obolibrary.org/obo/UBERON_0001582) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [buccinator muscle](http://purl.obolibrary.org/obo/UBERON_0001582) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845033 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Digestive_system_of_gastropods#Hepatopancreas" -### bulbospongiosus muscle `http://purl.obolibrary.org/obo/UBERON_0011389` +### _:genid2147845034 #### Added -- [bulbospongiosus muscle](http://purl.obolibrary.org/obo/UBERON_0011389) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845034 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23027930" -- [bulbospongiosus muscle](http://purl.obolibrary.org/obo/UBERON_0011389) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### calcaneus `http://purl.obolibrary.org/obo/UBERON_0001450` +### _:genid2147845035 #### Added -- [calcaneus](http://purl.obolibrary.org/obo/UBERON_0001450) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [calcaneus](http://purl.obolibrary.org/obo/UBERON_0001450) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845035 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Corpus_cavernosum" -### capitulum of humerus `http://purl.obolibrary.org/obo/UBERON_0010853` +### _:genid2147845036 #### Added -- [capitulum of humerus](http://purl.obolibrary.org/obo/UBERON_0010853) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845036 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Articular" -- [capitulum of humerus](http://purl.obolibrary.org/obo/UBERON_0010853) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845036 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/98" -### cardiac endomysium `http://purl.obolibrary.org/obo/UBERON_0011897` -#### Removed -- [cardiac endomysium](http://purl.obolibrary.org/obo/UBERON_0011897) SubClassOf [thoracic segment connective tissue](http://purl.obolibrary.org/obo/UBERON_0003837) +### _:genid2147845037 +#### Added +- _:genid2147845037 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_39" -### cardiac muscle tissue `http://purl.obolibrary.org/obo/UBERON_0001133` -#### Removed -- [cardiac muscle tissue](http://purl.obolibrary.org/obo/UBERON_0001133) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [heart](http://purl.obolibrary.org/obo/UBERON_0000948) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ZFA" +### _:genid2147845038 #### Added -- [cardiac muscle tissue](http://purl.obolibrary.org/obo/UBERON_0001133) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [primary circulatory organ](http://purl.obolibrary.org/obo/UBERON_0007100) +- _:genid2147845038 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003226" -### cardiac septum cell `http://purl.obolibrary.org/obo/CL_2000022` -#### Removed -- [cardiac septum cell](http://purl.obolibrary.org/obo/CL_2000022) SubClassOf [native cell](http://purl.obolibrary.org/obo/CL_0000003) +### _:genid2147845039 #### Added -- [cardiac septum cell](http://purl.obolibrary.org/obo/CL_2000022) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- _:genid2147845039 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Persistent_left_superior_vena_cava" -### cardiac valve cell `http://purl.obolibrary.org/obo/CL_1000147` -#### Removed -- [cardiac valve cell](http://purl.obolibrary.org/obo/CL_1000147) SubClassOf [native cell](http://purl.obolibrary.org/obo/CL_0000003) +### _:genid2147845040 #### Added -- [cardiac valve cell](http://purl.obolibrary.org/obo/CL_1000147) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- _:genid2147845040 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Proper_plantar_digital_arteries" -### cardiocyte `http://purl.obolibrary.org/obo/CL_0002494` -#### Removed -- [cardiocyte](http://purl.obolibrary.org/obo/CL_0002494) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +### _:genid2147845041 +#### Added +- _:genid2147845041 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376" -### cartilage of bronchus `http://purl.obolibrary.org/obo/UBERON_0001956` +### _:genid2147845042 #### Added -- [cartilage of bronchus](http://purl.obolibrary.org/obo/UBERON_0001956) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845042 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://people.eku.edu/ritchisong/feather_evolution.htm" -- [cartilage of bronchus](http://purl.obolibrary.org/obo/UBERON_0001956) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### _:genid2147845043 + +#### Added +- _:genid2147845043 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0089570" -### cartilage of main bronchus `http://purl.obolibrary.org/obo/UBERON_0001102` -#### Removed -- [cartilage of main bronchus](http://purl.obolibrary.org/obo/UBERON_0001102) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [cartilage of main bronchus](http://purl.obolibrary.org/obo/UBERON_0001102) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### _:genid2147845044 +#### Added +- _:genid2147845044 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3214" -### catecholamine uptake `http://purl.obolibrary.org/obo/GO_0090493` -#### Removed -- [catecholamine uptake](http://purl.obolibrary.org/obo/GO_0090493) SubClassOf [import into cell](http://purl.obolibrary.org/obo/GO_0098657) +### _:genid2147845045 +#### Added +- _:genid2147845045 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -### catecholaminergic neuron `http://purl.obolibrary.org/obo/CL_4033050` +### _:genid2147845046 #### Added -- [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) [label](http://www.w3.org/2000/01/rdf-schema#label) "catecholaminergic neuron" - -- [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) [date](http://purl.org/dc/terms/date) "2023-05-18T12:07:45Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- _:genid2147845046 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" -- [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -- [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A neuron that releases catecholamine as a neurotransmitter." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0521442516" +### _:genid2147845047 - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12094209" +#### Added +- _:genid2147845047 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009989" -- [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Frequently used when describing the developing nervous system in zebrafish. A catecholaminergic neuron expresses tyrosine hydroxylase (TH), tyrosine hydroxylase 2 (TH2), aromatic amino acid decarboxylase (AADC), dopamine b-hydroxylase (DBH), and phenylethanolamine-N-methyl transferase (PEMT), which are enzymes necessary for catecholamine synthesis." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:10191060" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-2244-7917" +### _:genid2147845048 - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:34880760" +#### Added +- _:genid2147845048 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12128258" -- Class: [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) +### _:genid2147845049 -- [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) EquivalentTo [neuron](http://purl.obolibrary.org/obo/CL_0000540) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some [catecholamine secretion, neurotransmission](http://purl.obolibrary.org/obo/GO_0160043)) +#### Added +- _:genid2147845049 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Node_of_ranvier" -- [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) SubClassOf [capable of](http://purl.obolibrary.org/obo/RO_0002215) some [catecholamine secretion, neurotransmission](http://purl.obolibrary.org/obo/GO_0160043) -- [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) SubClassOf [neuron](http://purl.obolibrary.org/obo/CL_0000540) +### _:genid2147845050 -- [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) SubClassOf [secretory cell](http://purl.obolibrary.org/obo/CL_0000151) +#### Added +- _:genid2147845050 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009988" -### caudal ganglionic eminence derived interneuron `http://purl.obolibrary.org/obo/CL_4023064` +### _:genid2147845051 #### Added -- [caudal ganglionic eminence derived interneuron](http://purl.obolibrary.org/obo/CL_4023064) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845051 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003227" -- [caudal ganglionic eminence derived interneuron](http://purl.obolibrary.org/obo/CL_4023064) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### caudal vertebra `http://purl.obolibrary.org/obo/UBERON_0001095` +### _:genid2147845052 #### Added -- [caudal vertebra](http://purl.obolibrary.org/obo/UBERON_0001095) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [caudal vertebra](http://purl.obolibrary.org/obo/UBERON_0001095) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845052 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Dorsal_digital_arteries#" -### celiac lymph node `http://purl.obolibrary.org/obo/UBERON_0002508` +### _:genid2147845053 #### Added -- [celiac lymph node](http://purl.obolibrary.org/obo/UBERON_0002508) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "celiac axis lymph node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:34207898" +- _:genid2147845053 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12796587" +- _:genid2147845053 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -- [celiac lymph node](http://purl.obolibrary.org/obo/UBERON_0002508) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "coeliac axis lymph node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:33532471" - -### cellular anatomical entity `http://purl.obolibrary.org/obo/GO_0110165` +### _:genid2147845054 #### Added -- [cellular anatomical entity](http://purl.obolibrary.org/obo/GO_0110165) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_pir](http://purl.obolibrary.org/obo/go#goslim_pir) +- _:genid2147845054 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Iris_muscle" -### cellular response to epinephrine stimulus `http://purl.obolibrary.org/obo/GO_0071872` -#### Removed -- [cellular response to epinephrine stimulus](http://purl.obolibrary.org/obo/GO_0071872) SubClassOf [cellular response to catecholamine stimulus](http://purl.obolibrary.org/obo/GO_0071870) +### _:genid2147845055 #### Added -- [cellular response to epinephrine stimulus](http://purl.obolibrary.org/obo/GO_0071872) SubClassOf [cellular response to chemical stimulus](http://purl.obolibrary.org/obo/GO_0070887) +- _:genid2147845055 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Enteric_ganglia" -### cerebellar inhibitory GABAergic interneuron `http://purl.obolibrary.org/obo/CL_4023057` +### _:genid2147845056 #### Added -- [cerebellar inhibitory GABAergic interneuron](http://purl.obolibrary.org/obo/CL_4023057) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845056 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -- [cerebellar inhibitory GABAergic interneuron](http://purl.obolibrary.org/obo/CL_4023057) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### cerebral cortex GABAergic interneuron development `http://purl.obolibrary.org/obo/GO_0021894` -#### Removed -- [cerebral cortex GABAergic interneuron development](http://purl.obolibrary.org/obo/GO_0021894) SubClassOf [forebrain neuron development](http://purl.obolibrary.org/obo/GO_0021884) +### _:genid2147845057 #### Added -- [cerebral cortex GABAergic interneuron development](http://purl.obolibrary.org/obo/GO_0021894) SubClassOf [central nervous system neuron development](http://purl.obolibrary.org/obo/GO_0021954) +- _:genid2147845057 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009946" -### cerebral cortex GABAergic interneuron differentiation `http://purl.obolibrary.org/obo/GO_0021892` -#### Removed -- [cerebral cortex GABAergic interneuron differentiation](http://purl.obolibrary.org/obo/GO_0021892) SubClassOf [forebrain neuron differentiation](http://purl.obolibrary.org/obo/GO_0021879) +### _:genid2147845058 +#### Added +- _:genid2147845058 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0010003" -### cerebral cortex neuron `http://purl.obolibrary.org/obo/CL_0010012` +### _:genid2147845059 #### Added -- [cerebral cortex neuron](http://purl.obolibrary.org/obo/CL_0010012) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845059 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_28" -- [cerebral cortex neuron](http://purl.obolibrary.org/obo/CL_0010012) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0002726` +### _:genid2147845060 #### Added -- [cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0002726) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0002726) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845060 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009990" -### cervical spinal cord dorsal column `http://purl.obolibrary.org/obo/UBERON_0005841` +### _:genid2147845061 #### Added -- [cervical spinal cord dorsal column](http://purl.obolibrary.org/obo/UBERON_0005841) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845061 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pronucleus" -- [cervical spinal cord dorsal column](http://purl.obolibrary.org/obo/UBERON_0005841) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### cervical spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0014620` +### _:genid2147845062 #### Added -- [cervical spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014620) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [cervical spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014620) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845062 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009364" -### cervical spinal cord gray commissure `http://purl.obolibrary.org/obo/UBERON_0029626` +### _:genid2147845063 #### Added -- [cervical spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0029626) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845063 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0000606" -- [cervical spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0029626) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### cervical spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0014613` +### _:genid2147845064 #### Added -- [cervical spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0014613) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [cervical spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0014613) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845064 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:Wasila" -### cervical spinal cord lateral column `http://purl.obolibrary.org/obo/UBERON_0005849` +### _:genid2147845065 #### Added -- [cervical spinal cord lateral column](http://purl.obolibrary.org/obo/UBERON_0005849) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845065 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -- [cervical spinal cord lateral column](http://purl.obolibrary.org/obo/UBERON_0005849) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### cervical spinal cord lateral horn `http://purl.obolibrary.org/obo/UBERON_0014619` +### _:genid2147845066 #### Added -- [cervical spinal cord lateral horn](http://purl.obolibrary.org/obo/UBERON_0014619) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [cervical spinal cord lateral horn](http://purl.obolibrary.org/obo/UBERON_0014619) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845066 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Common_plantar_digital_arteries" -### cervical spinal cord ventral column `http://purl.obolibrary.org/obo/UBERON_0005854` +### _:genid2147845067 #### Added -- [cervical spinal cord ventral column](http://purl.obolibrary.org/obo/UBERON_0005854) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845067 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3220" -- [cervical spinal cord ventral column](http://purl.obolibrary.org/obo/UBERON_0005854) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### cervical spinal cord ventral commissure `http://purl.obolibrary.org/obo/UBERON_0007836` +### _:genid2147845068 #### Added -- [cervical spinal cord ventral commissure](http://purl.obolibrary.org/obo/UBERON_0007836) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [cervical spinal cord ventral commissure](http://purl.obolibrary.org/obo/UBERON_0007836) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845068 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009997" -### cervical spinal cord ventral horn `http://purl.obolibrary.org/obo/UBERON_0014621` +### _:genid2147845069 #### Added -- [cervical spinal cord ventral horn](http://purl.obolibrary.org/obo/UBERON_0014621) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845069 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" -- [cervical spinal cord ventral horn](http://purl.obolibrary.org/obo/UBERON_0014621) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### cervical spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0014614` +### _:genid2147845070 #### Added -- [cervical spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0014614) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [cervical spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0014614) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845070 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0021751" -### cervical subsegment of spinal cord `http://purl.obolibrary.org/obo/UBERON_0007714` +### _:genid2147845071 #### Added -- [cervical subsegment of spinal cord](http://purl.obolibrary.org/obo/UBERON_0007714) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845071 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/p/geneontology/ontology-requests/9676/" -- [cervical subsegment of spinal cord](http://purl.obolibrary.org/obo/UBERON_0007714) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845071 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:dph" +- _:genid2147845071 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ZFIN:cvs" -### cervical vertebra `http://purl.obolibrary.org/obo/UBERON_0002413` +- _:genid2147845071 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Hypoblast" -#### Added -- [cervical vertebra](http://purl.obolibrary.org/obo/UBERON_0002413) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [cervical vertebra](http://purl.obolibrary.org/obo/UBERON_0002413) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147845072 +#### Added +- _:genid2147845072 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" -### chemoreceptor cell `http://purl.obolibrary.org/obo/CL_0000206` -#### Removed -- [chemoreceptor cell](http://purl.obolibrary.org/obo/CL_0000206) EquivalentTo [neuron](http://purl.obolibrary.org/obo/CL_0000540) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some [detection of chemical stimulus involved in sensory perception](http://purl.obolibrary.org/obo/GO_0050907)) -- [chemoreceptor cell](http://purl.obolibrary.org/obo/CL_0000206) SubClassOf [sensory neuron](http://purl.obolibrary.org/obo/CL_0000101) +### _:genid2147845073 #### Added -- [chemoreceptor cell](http://purl.obolibrary.org/obo/CL_0000206) EquivalentTo [sensory receptor cell](http://purl.obolibrary.org/obo/CL_0000197) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some [detection of chemical stimulus involved in sensory perception](http://purl.obolibrary.org/obo/GO_0050907)) - -- [chemoreceptor cell](http://purl.obolibrary.org/obo/CL_0000206) SubClassOf [sensory receptor cell](http://purl.obolibrary.org/obo/CL_0000197) +- _:genid2147845073 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0006943" -### chest muscle `http://purl.obolibrary.org/obo/UBERON_0002426` +### _:genid2147845074 #### Added -- [chest muscle](http://purl.obolibrary.org/obo/UBERON_0002426) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845074 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3218" -- [chest muscle](http://purl.obolibrary.org/obo/UBERON_0002426) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### choroid plexus cell `http://purl.obolibrary.org/obo/CL_4023073` +### _:genid2147845075 #### Added -- [choroid plexus cell](http://purl.obolibrary.org/obo/CL_4023073) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [choroid plexus cell](http://purl.obolibrary.org/obo/CL_4023073) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845075 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Internal_spermatic_fascia" -### choroidal cell of the eye `http://purl.obolibrary.org/obo/CL_0000348` -#### Removed -- [choroidal cell of the eye](http://purl.obolibrary.org/obo/CL_0000348) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell of the choroid of the eye." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:add" +### _:genid2147845076 #### Added -- [choroidal cell of the eye](http://purl.obolibrary.org/obo/CL_0000348) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A structural cell that is part of optic choroid." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:add" - -- [choroidal cell of the eye](http://purl.obolibrary.org/obo/CL_0000348) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- _:genid2147845076 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0000864" -- [choroidal cell of the eye](http://purl.obolibrary.org/obo/CL_0000348) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) - -### ciliary muscle `http://purl.obolibrary.org/obo/UBERON_0001605` +### _:genid2147845077 #### Added -- [ciliary muscle](http://purl.obolibrary.org/obo/UBERON_0001605) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [ciliary muscle](http://purl.obolibrary.org/obo/UBERON_0001605) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845077 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://orcid.org/0000-0002-6601-2165" -### ciliary muscle cell `http://purl.obolibrary.org/obo/CL_1000443` +### _:genid2147845078 #### Added -- [ciliary muscle cell](http://purl.obolibrary.org/obo/CL_1000443) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- _:genid2147845078 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_26" -### clavicle bone `http://purl.obolibrary.org/obo/UBERON_0001105` +### _:genid2147845079 #### Added -- [clavicle bone](http://purl.obolibrary.org/obo/UBERON_0001105) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845079 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -- [clavicle bone](http://purl.obolibrary.org/obo/UBERON_0001105) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### _:genid2147845080 -### club cell `http://purl.obolibrary.org/obo/CL_0000158` -#### Removed -- [club cell](http://purl.obolibrary.org/obo/CL_0000158) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "club cell of bronchiole" +#### Added +- _:genid2147845080 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/7" -- [club cell](http://purl.obolibrary.org/obo/CL_0000158) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "bronchiolar non-ciliated cell" +- _:genid2147845080 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/6" -- [club cell](http://purl.obolibrary.org/obo/CL_0000158) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Epithelial progenitor cell of the lung. Club cells are dome-shaped with short microvilli but no cilia. They function to protect the bronchiolar epithelium. Club cells also multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:https://doi.org/10.1378/chest.12-2762" +### _:genid2147845081 - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.1183/09031936.00146609" +#### Added +- _:genid2147845081 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_9" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28128362" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:7905712" +### _:genid2147845082 -- [club cell](http://purl.obolibrary.org/obo/CL_0000158) EquivalentTo [bronchial epithelial cell](http://purl.obolibrary.org/obo/CL_0002328) and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [domed](http://purl.obolibrary.org/obo/PATO_0001789)) and ([has plasma membrane part](http://purl.obolibrary.org/obo/RO_0002104) some [microvillus](http://purl.obolibrary.org/obo/GO_0005902)) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some [secretion by cell](http://purl.obolibrary.org/obo/GO_0032940)) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some [surfactant homeostasis](http://purl.obolibrary.org/obo/GO_0043129)) +#### Added +- _:genid2147845082 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003225" -- [club cell](http://purl.obolibrary.org/obo/CL_0000158) SubClassOf [has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [domed](http://purl.obolibrary.org/obo/PATO_0001789) -- [club cell](http://purl.obolibrary.org/obo/CL_0000158) SubClassOf [bronchial epithelial cell](http://purl.obolibrary.org/obo/CL_0002328) - - [is_inferred](http://www.geneontology.org/formats/oboInOwl#is_inferred) "true" +### _:genid2147845083 #### Added -- [club cell](http://purl.obolibrary.org/obo/CL_0000158) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A non-mucous, epithelial secretory cell that is part of the tracheobronchial tree. A club cell has short microvilli but no cilia. A club cell is able to multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium and it also protects the tracheobronchial epithelium." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" +- _:genid2147845083 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Sclera#Histology" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:https://doi.org/10.1378/chest.12-2762" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.1183/09031936.00146609" +### _:genid2147845084 - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28128362" +#### Added +- _:genid2147845084 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:External_sphincter_muscle_of_female_urethra" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29874100" +- _:genid2147845084 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:External_sphincter_muscle_of_male_urethra" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:7905712" -- [club cell](http://purl.obolibrary.org/obo/CL_0000158) SubClassOf [progenitor cell](http://purl.obolibrary.org/obo/CL_0011026) +### _:genid2147845085 -- [club cell](http://purl.obolibrary.org/obo/CL_0000158) SubClassOf [epithelial cell of tracheobronchial tree](http://purl.obolibrary.org/obo/CL_0002202) +#### Added +- _:genid2147845085 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" -### coccygeus muscle `http://purl.obolibrary.org/obo/UBERON_0001327` +### _:genid2147845086 #### Added -- [coccygeus muscle](http://purl.obolibrary.org/obo/UBERON_0001327) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845086 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://dev.biologists.org/content/128/22/4573.full" -- [coccygeus muscle](http://purl.obolibrary.org/obo/UBERON_0001327) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### coccyx `http://purl.obolibrary.org/obo/UBERON_0001350` +### _:genid2147845087 #### Added -- [coccyx](http://purl.obolibrary.org/obo/UBERON_0001350) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845087 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23153189" -- [coccyx](http://purl.obolibrary.org/obo/UBERON_0001350) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147845088 -### compound eye retinal cell `http://purl.obolibrary.org/obo/CL_0009001` -#### Removed -- [compound eye retinal cell](http://purl.obolibrary.org/obo/CL_0009001) SubClassOf [somatic cell](http://purl.obolibrary.org/obo/CL_0002371) +#### Added +- _:genid2147845088 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Hamate_bone" -- [compound eye retinal cell](http://purl.obolibrary.org/obo/CL_0009001) SubClassOf [anatomical entity](http://purl.obolibrary.org/obo/CARO_0000000) -- [compound eye retinal cell](http://purl.obolibrary.org/obo/CL_0009001) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [photoreceptor array](http://purl.obolibrary.org/obo/UBERON_0005388) +### _:genid2147845089 #### Added -- [compound eye retinal cell](http://purl.obolibrary.org/obo/CL_0009001) SubClassOf [retinal cell](http://purl.obolibrary.org/obo/CL_0009004) - - -### condyle of femur `http://purl.obolibrary.org/obo/UBERON_0009980` -#### Removed -- [condyle of femur](http://purl.obolibrary.org/obo/UBERON_0009980) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845089 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0060682" -- [condyle of femur](http://purl.obolibrary.org/obo/UBERON_0009980) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147845090 +#### Added +- _:genid2147845090 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003291" -### condyle of tibia `http://purl.obolibrary.org/obo/UBERON_0009989` -#### Removed -- [condyle of tibia](http://purl.obolibrary.org/obo/UBERON_0009989) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [condyle of tibia](http://purl.obolibrary.org/obo/UBERON_0009989) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147845091 +#### Added +- _:genid2147845091 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm" -### conjunctiva `http://purl.obolibrary.org/obo/UBERON_0001811` +### _:genid2147845092 #### Added -- [conjunctiva](http://purl.obolibrary.org/obo/UBERON_0001811) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [conjunctiva](http://purl.obolibrary.org/obo/UBERON_0001811) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845092 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22622577" -### conjunctival epithelial cell `http://purl.obolibrary.org/obo/CL_1000432` +### _:genid2147845093 #### Added -- [conjunctival epithelial cell](http://purl.obolibrary.org/obo/CL_1000432) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- _:genid2147845093 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009996" -### connective tissue cell `http://purl.obolibrary.org/obo/CL_0002320` -#### Removed -- [connective tissue cell](http://purl.obolibrary.org/obo/CL_0002320) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +### _:genid2147845094 #### Added -- [connective tissue cell](http://purl.obolibrary.org/obo/CL_0002320) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [connective tissue cell](http://purl.obolibrary.org/obo/CL_0002320) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845094 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072166" -### conventional dendritic cell `http://purl.obolibrary.org/obo/CL_0000990` +### _:genid2147845095 #### Added -- [conventional dendritic cell](http://purl.obolibrary.org/obo/CL_0000990) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- _:genid2147845095 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Superior_olivary_complex#Dorsal_periolivary_nucleus_.28DPO.29" -### coracobrachialis muscle `http://purl.obolibrary.org/obo/UBERON_0001505` +### _:genid2147845096 #### Added -- [coracobrachialis muscle](http://purl.obolibrary.org/obo/UBERON_0001505) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845096 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pouch_(marsupial)" -- [coracobrachialis muscle](http://purl.obolibrary.org/obo/UBERON_0001505) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### coracoid process of scapula `http://purl.obolibrary.org/obo/UBERON_0006633` +### _:genid2147845097 #### Added -- [coracoid process of scapula](http://purl.obolibrary.org/obo/UBERON_0006633) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [coracoid process of scapula](http://purl.obolibrary.org/obo/UBERON_0006633) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845097 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Adductor_muscles_of_the_hip" -### corneal epithelial cell `http://purl.obolibrary.org/obo/CL_0000575` +### _:genid2147845098 #### Added -- [corneal epithelial cell](http://purl.obolibrary.org/obo/CL_0000575) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- _:genid2147845098 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Trapezium_(bone)" -### corneo-scleral junction `http://purl.obolibrary.org/obo/UBERON_0006761` +### _:genid2147845099 #### Added -- [corneo-scleral junction](http://purl.obolibrary.org/obo/UBERON_0006761) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845099 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Neurofilament" -- [corneo-scleral junction](http://purl.obolibrary.org/obo/UBERON_0006761) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### corneocyte `http://purl.obolibrary.org/obo/CL_0002153` +### _:genid2147845100 #### Added -- [corneocyte](http://purl.obolibrary.org/obo/CL_0002153) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- _:genid2147845100 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" -### coronoid process of ulna `http://purl.obolibrary.org/obo/UBERON_0010994` +### _:genid2147845101 #### Added -- [coronoid process of ulna](http://purl.obolibrary.org/obo/UBERON_0010994) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845101 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -- [coronoid process of ulna](http://purl.obolibrary.org/obo/UBERON_0010994) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### _:genid2147845102 -### cortical interneuron `http://purl.obolibrary.org/obo/CL_0008031` -#### Removed -- [cortical interneuron](http://purl.obolibrary.org/obo/CL_0008031) SubClassOf [neuron of the forebrain](http://purl.obolibrary.org/obo/CL_0012001) +#### Added +- _:genid2147845102 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" +- _:genid2147845102 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -### cranial bone `http://purl.obolibrary.org/obo/UBERON_0004766` +### _:genid2147845103 #### Added -- [cranial bone](http://purl.obolibrary.org/obo/UBERON_0004766) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845103 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/uberon/issues/1161" -- [cranial bone](http://purl.obolibrary.org/obo/UBERON_0004766) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845103 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1755" -### cranial muscle `http://purl.obolibrary.org/obo/UBERON_0002376` +### _:genid2147845104 #### Added -- [cranial muscle](http://purl.obolibrary.org/obo/UBERON_0002376) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [cranial muscle](http://purl.obolibrary.org/obo/UBERON_0002376) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845104 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" -### cranial neuron projection bundle `http://purl.obolibrary.org/obo/UBERON_0034713` +### _:genid2147845105 #### Added -- [cranial neuron projection bundle](http://purl.obolibrary.org/obo/UBERON_0034713) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845105 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Coat_(animal)" -- [cranial neuron projection bundle](http://purl.obolibrary.org/obo/UBERON_0034713) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### _:genid2147845106 -### cranial temporal crest `http://purl.obolibrary.org/obo/UBERON_7500128` -#### Removed -- [cranial temporal crest](http://purl.obolibrary.org/obo/UBERON_7500128) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A dorsally concave, laterally-directed crest that terminates at the caudal-dorsal process of a zygomatic bone. It is bounded by the superior and inferior temporal lines." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0001-8415-4848" +#### Added +- _:genid2147845106 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Lumbar_spinal_cord" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.5455/ijlr.20170908094210" -- [cranial temporal crest](http://purl.obolibrary.org/obo/UBERON_7500128) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [cranium](http://purl.obolibrary.org/obo/UBERON_0003128) +### _:genid2147845107 #### Added -- [cranial temporal crest](http://purl.obolibrary.org/obo/UBERON_7500128) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ridge or similar projection connected to the temporal lines and nuchal crest on the squamous part of the occipital bone. It bounds the posteroventral part of the temporal fossa." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.researchgate.net/publication/325258124_Morphological_Study_on_the_Skull_of_Wild_Boar_of_Mizoram_Sus_scrofa" +- _:genid2147845107 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Facial_skeleton" -- [cranial temporal crest](http://purl.obolibrary.org/obo/UBERON_7500128) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/obophenotype/uberon/issues/2882"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [cranial temporal crest](http://purl.obolibrary.org/obo/UBERON_7500128) EquivalentTo [crest](http://purl.obolibrary.org/obo/UBERON_4200133) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [occipital bone](http://purl.obolibrary.org/obo/UBERON_0001676)) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [temporal bone](http://purl.obolibrary.org/obo/UBERON_0001678)) +### _:genid2147845108 -- [cranial temporal crest](http://purl.obolibrary.org/obo/UBERON_7500128) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [temporal bone](http://purl.obolibrary.org/obo/UBERON_0001678) +#### Added +- _:genid2147845108 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21558186" -- [cranial temporal crest](http://purl.obolibrary.org/obo/UBERON_7500128) SubClassOf [anatomical entity](http://purl.obolibrary.org/obo/CARO_0000000) -- [cranial temporal crest](http://purl.obolibrary.org/obo/UBERON_7500128) SubClassOf [skeletal element projection](http://purl.obolibrary.org/obo/UBERON_4100000) +### _:genid2147845109 -- [cranial temporal crest](http://purl.obolibrary.org/obo/UBERON_7500128) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [occipital bone](http://purl.obolibrary.org/obo/UBERON_0001676) +#### Added +- _:genid2147845109 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Brodmann_area_18" -### cranial temporal line `http://purl.obolibrary.org/obo/UBERON_8500000` +### _:genid2147845110 #### Added -- [cranial temporal line](http://purl.obolibrary.org/obo/UBERON_8500000) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8500000" +- _:genid2147845110 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -- [cranial temporal line](http://purl.obolibrary.org/obo/UBERON_8500000) [label](http://www.w3.org/2000/01/rdf-schema#label) "cranial temporal line" +- _:genid2147845110 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -- [cranial temporal line](http://purl.obolibrary.org/obo/UBERON_8500000) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -- [cranial temporal line](http://purl.obolibrary.org/obo/UBERON_8500000) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-8415-4848](https://orcid.org/0000-0001-8415-4848) +### _:genid2147845111 -- [cranial temporal line](http://purl.obolibrary.org/obo/UBERON_8500000) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A dorsally concave, laterally-directed line on either side of the skull that runs along the temporal fossa, starting from above the zygomatico-frontal suture. It bounds the anterodorsal part of the temporal fossa and its the attachment site to the temporalis muscle." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.imaios.com/en/e-anatomy/anatomical-structure/temporal-line-1536895640" - - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://en.wikipedia.org/wiki/Parietal_bone" - - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.merriam-webster.com/medical/temporal%20line" +#### Added +- _:genid2147845111 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Septum_secondum" -- Class: [cranial temporal line](http://purl.obolibrary.org/obo/UBERON_8500000) +- _:genid2147845111 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003285" -- [cranial temporal line](http://purl.obolibrary.org/obo/UBERON_8500000) SubClassOf [connects](http://purl.obolibrary.org/obo/RO_0002176) some [tetrapod parietal bone](http://purl.obolibrary.org/obo/UBERON_0000210) -- [cranial temporal line](http://purl.obolibrary.org/obo/UBERON_8500000) SubClassOf [connects](http://purl.obolibrary.org/obo/RO_0002176) some [tetrapod frontal bone](http://purl.obolibrary.org/obo/UBERON_0000209) +### _:genid2147845112 -- [cranial temporal line](http://purl.obolibrary.org/obo/UBERON_8500000) SubClassOf [anatomical line](http://purl.obolibrary.org/obo/UBERON_0006800) +#### Added +- _:genid2147845112 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Atlas_(anatomy)#Vertebral_foramen" -### cremaster muscle `http://purl.obolibrary.org/obo/UBERON_0008488` +### _:genid2147845113 #### Added -- [cremaster muscle](http://purl.obolibrary.org/obo/UBERON_0008488) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845113 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EFO:0000240" -- [cremaster muscle](http://purl.obolibrary.org/obo/UBERON_0008488) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### cricopharyngeus muscle `http://purl.obolibrary.org/obo/UBERON_0010928` +### _:genid2147845114 #### Added -- [cricopharyngeus muscle](http://purl.obolibrary.org/obo/UBERON_0010928) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [cricopharyngeus muscle](http://purl.obolibrary.org/obo/UBERON_0010928) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845114 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pisiform_joint" -### cricothyroid muscle `http://purl.obolibrary.org/obo/UBERON_0001566` +### _:genid2147845115 #### Added -- [cricothyroid muscle](http://purl.obolibrary.org/obo/UBERON_0001566) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845115 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20557782" -- [cricothyroid muscle](http://purl.obolibrary.org/obo/UBERON_0001566) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845115 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20566102" -### crystallin accumulating cell `http://purl.obolibrary.org/obo/CL_0000306` +### _:genid2147845116 #### Added -- [crystallin accumulating cell](http://purl.obolibrary.org/obo/CL_0000306) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- _:genid2147845116 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Anal_gland" -### cuboid bone `http://purl.obolibrary.org/obo/UBERON_0001455` +### _:genid2147845117 #### Added -- [cuboid bone](http://purl.obolibrary.org/obo/UBERON_0001455) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845117 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Rattlesnake#Rattle" -- [cuboid bone](http://purl.obolibrary.org/obo/UBERON_0001455) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### _:genid2147845118 -### cytoplasmic actin-based contraction involved in cell motility `http://purl.obolibrary.org/obo/GO_0060327` -#### Removed -- [cytoplasmic actin-based contraction involved in cell motility](http://purl.obolibrary.org/obo/GO_0060327) [label](http://www.w3.org/2000/01/rdf-schema#label) "cytoplasmic actin-based contraction involved in cell motility" - -- [cytoplasmic actin-based contraction involved in cell motility](http://purl.obolibrary.org/obo/GO_0060327) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +#### Added +- _:genid2147845118 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0073040584" -- [cytoplasmic actin-based contraction involved in cell motility](http://purl.obolibrary.org/obo/GO_0060327) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The actin filament-based movement by which cytoplasmic actin filaments slide past one another resulting in a contraction that propels the cell from one place to another." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" -- [cytoplasmic actin-based contraction involved in cell motility](http://purl.obolibrary.org/obo/GO_0060327) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0060327" +### _:genid2147845119 -- Class: [cytoplasmic actin-based contraction involved in cell motility](http://purl.obolibrary.org/obo/GO_0060327) +#### Added +- _:genid2147845119 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376" -- [cytoplasmic actin-based contraction involved in cell motility](http://purl.obolibrary.org/obo/GO_0060327) EquivalentTo [actin-mediated cell contraction](http://purl.obolibrary.org/obo/GO_0070252) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [cell motility](http://purl.obolibrary.org/obo/GO_0048870)) +- _:genid2147845119 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:14595018" -- [cytoplasmic actin-based contraction involved in cell motility](http://purl.obolibrary.org/obo/GO_0060327) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [cell motility](http://purl.obolibrary.org/obo/GO_0048870) -- [cytoplasmic actin-based contraction involved in cell motility](http://purl.obolibrary.org/obo/GO_0060327) SubClassOf [actin-mediated cell contraction](http://purl.obolibrary.org/obo/GO_0070252) +### _:genid2147845120 +#### Added +- _:genid2147845120 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23027930" -### deep inguinal lymph node `http://purl.obolibrary.org/obo/UBERON_0009006` +### _:genid2147845121 #### Added -- [deep inguinal lymph node](http://purl.obolibrary.org/obo/UBERON_0009006) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "femoral lymph node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28602173" +- _:genid2147845121 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1732" -### deep part of masseter muscle `http://purl.obolibrary.org/obo/UBERON_0010995` +### _:genid2147845122 #### Added -- [deep part of masseter muscle](http://purl.obolibrary.org/obo/UBERON_0010995) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845122 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0034076" -- [deep part of masseter muscle](http://purl.obolibrary.org/obo/UBERON_0010995) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845122 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007735" +- _:genid2147845122 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007196" -### deltoid `http://purl.obolibrary.org/obo/UBERON_0001476` +- _:genid2147845122 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0002482" -#### Added -- [deltoid](http://purl.obolibrary.org/obo/UBERON_0001476) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [deltoid](http://purl.obolibrary.org/obo/UBERON_0001476) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### dentate gyrus neuron `http://purl.obolibrary.org/obo/CL_4023062` +### _:genid2147845123 #### Added -- [dentate gyrus neuron](http://purl.obolibrary.org/obo/CL_4023062) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [dentate gyrus neuron](http://purl.obolibrary.org/obo/CL_4023062) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845123 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Trapezoid_bone" -### depressor anguli oris muscle `http://purl.obolibrary.org/obo/UBERON_0008597` +### _:genid2147845124 #### Added -- [depressor anguli oris muscle](http://purl.obolibrary.org/obo/UBERON_0008597) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845124 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern" -- [depressor anguli oris muscle](http://purl.obolibrary.org/obo/UBERON_0008597) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### dilatator pupillae `http://purl.obolibrary.org/obo/UBERON_0001608` +### _:genid2147845125 #### Added -- [dilatator pupillae](http://purl.obolibrary.org/obo/UBERON_0001608) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [dilatator pupillae](http://purl.obolibrary.org/obo/UBERON_0001608) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845125 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0003832" -### distal carpal bone 1 `http://purl.obolibrary.org/obo/UBERON_0001430` +### _:genid2147845126 #### Added -- [distal carpal bone 1](http://purl.obolibrary.org/obo/UBERON_0001430) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845126 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:alex" -- [distal carpal bone 1](http://purl.obolibrary.org/obo/UBERON_0001430) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### distal carpal bone 2 `http://purl.obolibrary.org/obo/UBERON_0001431` +### _:genid2147845127 #### Added -- [distal carpal bone 2](http://purl.obolibrary.org/obo/UBERON_0001431) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [distal carpal bone 2](http://purl.obolibrary.org/obo/UBERON_0001431) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845127 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0003224" -### distal carpal bone 3 `http://purl.obolibrary.org/obo/UBERON_0001432` +### _:genid2147845128 #### Added -- [distal carpal bone 3](http://purl.obolibrary.org/obo/UBERON_0001432) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845128 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Gastric_juice" -- [distal carpal bone 3](http://purl.obolibrary.org/obo/UBERON_0001432) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### distal carpal bone 4 `http://purl.obolibrary.org/obo/UBERON_0001433` +### _:genid2147845129 #### Added -- [distal carpal bone 4](http://purl.obolibrary.org/obo/UBERON_0001433) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [distal carpal bone 4](http://purl.obolibrary.org/obo/UBERON_0001433) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845129 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3223" -### distal epiphysis of femur `http://purl.obolibrary.org/obo/UBERON_0004406` +### _:genid2147845130 #### Added -- [distal epiphysis of femur](http://purl.obolibrary.org/obo/UBERON_0004406) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845130 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0064792" -- [distal epiphysis of femur](http://purl.obolibrary.org/obo/UBERON_0004406) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845130 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FlyBase:FBrf0007733" -### distal phalanx of manual digit 1 `http://purl.obolibrary.org/obo/UBERON_0004337` +### _:genid2147845131 #### Added -- [distal phalanx of manual digit 1](http://purl.obolibrary.org/obo/UBERON_0004337) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845131 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BIRNLEX:1734" -- [distal phalanx of manual digit 1](http://purl.obolibrary.org/obo/UBERON_0004337) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### distal phalanx of manual digit 2 `http://purl.obolibrary.org/obo/UBERON_0004311` +### _:genid2147845132 #### Added -- [distal phalanx of manual digit 2](http://purl.obolibrary.org/obo/UBERON_0004311) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [distal phalanx of manual digit 2](http://purl.obolibrary.org/obo/UBERON_0004311) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845132 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Pterion" -### distal phalanx of manual digit 3 `http://purl.obolibrary.org/obo/UBERON_0004312` +### _:genid2147845133 #### Added -- [distal phalanx of manual digit 3](http://purl.obolibrary.org/obo/UBERON_0004312) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845133 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009993" -- [distal phalanx of manual digit 3](http://purl.obolibrary.org/obo/UBERON_0004312) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### distal phalanx of manual digit 4 `http://purl.obolibrary.org/obo/UBERON_0004313` +### _:genid2147845134 #### Added -- [distal phalanx of manual digit 4](http://purl.obolibrary.org/obo/UBERON_0004313) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [distal phalanx of manual digit 4](http://purl.obolibrary.org/obo/UBERON_0004313) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845134 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:VH" -### distal phalanx of manual digit 5 `http://purl.obolibrary.org/obo/UBERON_0004314` +### _:genid2147845135 #### Added -- [distal phalanx of manual digit 5](http://purl.obolibrary.org/obo/UBERON_0004314) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845135 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://www.embryology.ch/anglais/turinary/urinhaute03.html" -- [distal phalanx of manual digit 5](http://purl.obolibrary.org/obo/UBERON_0004314) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### distal phalanx of pedal digit 1 `http://purl.obolibrary.org/obo/UBERON_0004315` +### _:genid2147845136 #### Added -- [distal phalanx of pedal digit 1](http://purl.obolibrary.org/obo/UBERON_0004315) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845136 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UBERON:CL_meeting_20110725" -- [distal phalanx of pedal digit 1](http://purl.obolibrary.org/obo/UBERON_0004315) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845136 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html" -### distal phalanx of pedal digit 2 `http://purl.obolibrary.org/obo/UBERON_0004316` +### _:genid2147845137 #### Added -- [distal phalanx of pedal digit 2](http://purl.obolibrary.org/obo/UBERON_0004316) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [distal phalanx of pedal digit 2](http://purl.obolibrary.org/obo/UBERON_0004316) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845137 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Snout" -### distal phalanx of pedal digit 3 `http://purl.obolibrary.org/obo/UBERON_0004317` +### _:genid2147845138 #### Added -- [distal phalanx of pedal digit 3](http://purl.obolibrary.org/obo/UBERON_0004317) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845138 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://github.com/obophenotype/mouse-anatomy-ontology/issues/56" -- [distal phalanx of pedal digit 3](http://purl.obolibrary.org/obo/UBERON_0004317) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### distal phalanx of pedal digit 4 `http://purl.obolibrary.org/obo/UBERON_0004318` +### _:genid2147845139 #### Added -- [distal phalanx of pedal digit 4](http://purl.obolibrary.org/obo/UBERON_0004318) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [distal phalanx of pedal digit 4](http://purl.obolibrary.org/obo/UBERON_0004318) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845139 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PHENOSCAPE:alex" -### distal phalanx of pedal digit 5 `http://purl.obolibrary.org/obo/UBERON_0004319` +### _:genid2147845140 #### Added -- [distal phalanx of pedal digit 5](http://purl.obolibrary.org/obo/UBERON_0004319) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- _:genid2147845140 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HP:0003350" -- [distal phalanx of pedal digit 5](http://purl.obolibrary.org/obo/UBERON_0004319) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### distal tarsal bone 1 `http://purl.obolibrary.org/obo/UBERON_0001452` +### _:genid2147845141 #### Added -- [distal tarsal bone 1](http://purl.obolibrary.org/obo/UBERON_0001452) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [distal tarsal bone 1](http://purl.obolibrary.org/obo/UBERON_0001452) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845141 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" -### distal tarsal bone 2 `http://purl.obolibrary.org/obo/UBERON_0001453` +### _:genid2147845142 #### Added -- [distal tarsal bone 2](http://purl.obolibrary.org/obo/UBERON_0001453) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845142 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072165" -- [distal tarsal bone 2](http://purl.obolibrary.org/obo/UBERON_0001453) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### distal tarsal bone 3 `http://purl.obolibrary.org/obo/UBERON_0001454` +### _:genid2147845143 #### Added -- [distal tarsal bone 3](http://purl.obolibrary.org/obo/UBERON_0001454) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- _:genid2147845143 [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "neuronames:3221" -- [distal tarsal bone 3](http://purl.obolibrary.org/obo/UBERON_0001454) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### adenine `http://purl.obolibrary.org/obo/CHEBI_16708` -### domed `http://purl.obolibrary.org/obo/PATO_0001789` -#### Removed -- [domed](http://purl.obolibrary.org/obo/PATO_0001789) [id](http://www.geneontology.org/formats/oboInOwl#id) "PATO:0001789" +#### Added +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [mass](http://purl.obolibrary.org/obo/chebi/mass) "135.12690" -- [domed](http://purl.obolibrary.org/obo/PATO_0001789) [label](http://www.w3.org/2000/01/rdf-schema#label) "domed" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [domed](http://purl.obolibrary.org/obo/PATO_0001789) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PATOC:GVG" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank:DB00173" -- [domed](http://purl.obolibrary.org/obo/PATO_0001789) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [mpath_slim](http://purl.obolibrary.org/obo/pato#mpath_slim) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:15063338" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [domed](http://purl.obolibrary.org/obo/PATO_0001789) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [value_slim](http://purl.obolibrary.org/obo/pato#value_slim) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Adenine" -- [domed](http://purl.obolibrary.org/obo/PATO_0001789) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [cell_quality](http://purl.obolibrary.org/obo/pato#cell_quality) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KNApSAcK:C00001490" -- [domed](http://purl.obolibrary.org/obo/PATO_0001789) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "quality" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HMDB:HMDB0000034" -- Class: [domed](http://purl.obolibrary.org/obo/PATO_0001789) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The parent compound of the 6-aminopurines, composed of a purine having an amino group at C-6." -- [domed](http://purl.obolibrary.org/obo/PATO_0001789) SubClassOf [curved](http://purl.obolibrary.org/obo/PATO_0000406) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12951489" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H5N5" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:D00034" -### dopamine uptake `http://purl.obolibrary.org/obo/GO_0090494` -#### Removed -- [dopamine uptake](http://purl.obolibrary.org/obo/GO_0090494) SubClassOf [import into cell](http://purl.obolibrary.org/obo/GO_0098657) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:73-24-5" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "KEGG COMPOUND" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Ade" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CBN" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:2470" -### dopaminergic neuron `http://purl.obolibrary.org/obo/CL_0000700` -#### Removed -- [dopaminergic neuron](http://purl.obolibrary.org/obo/CL_0000700) SubClassOf [secretory cell](http://purl.obolibrary.org/obo/CL_0000151) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12829005" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [dopaminergic neuron](http://purl.obolibrary.org/obo/CL_0000700) SubClassOf [neuron](http://purl.obolibrary.org/obo/CL_0000540) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenine" -#### Added -- [dopaminergic neuron](http://purl.obolibrary.org/obo/CL_0000700) SubClassOf [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PDBeChem:ADE" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -### dorsal horn interneuron `http://purl.obolibrary.org/obo/CL_0011000` -#### Removed -- [dorsal horn interneuron](http://purl.obolibrary.org/obo/CL_0011000) SubClassOf [neuron of the dorsal spinal cord](http://purl.obolibrary.org/obo/CL_0002611) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13733" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:40579" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "9H-purin-6-amine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -### egg cell `http://purl.obolibrary.org/obo/CL_0000025` + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -#### Added -- [egg cell](http://purl.obolibrary.org/obo/CL_0000025) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adenin" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NIST_Chemistry_WebBook" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -### eighth thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006456` +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:22236" -#### Added -- [eighth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006456) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:73-24-5" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "NIST Chemistry WebBook" -- [eighth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006456) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "135.05450" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reaxys:608603" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Reaxys" -### eleventh thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006467` +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:17439666" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -#### Added -- [eleventh thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006467) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "GFFGJBXGBJISGV-UHFFFAOYSA-N" -- [eleventh thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006467) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00147" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADENINE" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PDBeChem" -### encapsulation of foreign target `http://purl.obolibrary.org/obo/GO_0035010` -#### Removed -- [encapsulation of foreign target](http://purl.obolibrary.org/obo/GO_0035010) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "6-Aminopurine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [encapsulation of foreign target](http://purl.obolibrary.org/obo/GO_0035010) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Events resulting in the formation of a multilayered cellular sheath surrounding an invader and thus preventing its development. This defense mechanism is often seen in insects in response to nematodes or parasitoids, which are too large to be phagocytosed by individual hemocytes. In some organisms the capsule is blackened due to melanization." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12225920" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:bf" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10)" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000022" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:15715490" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11846478" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:16708" -- [encapsulation of foreign target](http://purl.obolibrary.org/obo/GO_0035010) [label](http://www.w3.org/2000/01/rdf-schema#label) "encapsulation of foreign target" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "Nc1ncnc2[nH]cnc12" -- [encapsulation of foreign target](http://purl.obolibrary.org/obo/GO_0035010) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0035010" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:73-24-5" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ChemIDplus" -- Class: [encapsulation of foreign target](http://purl.obolibrary.org/obo/GO_0035010) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Adenine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [encapsulation of foreign target](http://purl.obolibrary.org/obo/GO_0035010) SubClassOf [immune effector process](http://purl.obolibrary.org/obo/GO_0002252) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "A" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Gmelin:3903" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Gmelin" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:ADENINE" -### endocrine cell `http://purl.obolibrary.org/obo/CL_0000163` +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11985597" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -#### Added -- [endocrine cell](http://purl.obolibrary.org/obo/CL_0000163) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:608603" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Drug_Central:89" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "DrugCentral" -### endocytic vesicle `http://purl.obolibrary.org/obo/GO_0030139` -#### Removed -- [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0030139" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:8070089" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "cellular_component" +- Class: [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) -- [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "endocytotic transport vesicle" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) SubClassOf [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) -- [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance. Endocytic vesicles fuse with early endosomes to deliver the cargo for further sorting." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [mouse metabolite](http://purl.obolibrary.org/obo/CHEBI_75771) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:19696797" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [human metabolite](http://purl.obolibrary.org/obo/CHEBI_77746) -- [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "endocytotic vesicle" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [Saccharomyces cerevisiae metabolite](http://purl.obolibrary.org/obo/CHEBI_75772) -- [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NIF_Subcellular:sao1362520468" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [Escherichia coli metabolite](http://purl.obolibrary.org/obo/CHEBI_76971) -- [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) [label](http://www.w3.org/2000/01/rdf-schema#label) "endocytic vesicle" +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) SubClassOf [has_parent_hydride](http://purl.obolibrary.org/obo/chebi#has_parent_hydride) some [9H-purine](http://purl.obolibrary.org/obo/CHEBI_35589) -- Class: [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) SubClassOf [6-aminopurines](http://purl.obolibrary.org/obo/CHEBI_20706) -- [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) SubClassOf [cytoplasmic vesicle](http://purl.obolibrary.org/obo/GO_0031410) +- [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [Daphnia magna metabolite](http://purl.obolibrary.org/obo/CHEBI_83056) +### adenine binding `http://purl.obolibrary.org/obo/GO_0002055` -### endocytic vesicle lumen `http://purl.obolibrary.org/obo/GO_0071682` -#### Removed -- [endocytic vesicle lumen](http://purl.obolibrary.org/obo/GO_0071682) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The volume enclosed by the membrane of an endocytic vesicle." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:pde" +#### Added +- [adenine binding](http://purl.obolibrary.org/obo/GO_0002055) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0002055" -- [endocytic vesicle lumen](http://purl.obolibrary.org/obo/GO_0071682) [label](http://www.w3.org/2000/01/rdf-schema#label) "endocytic vesicle lumen" +- [adenine binding](http://purl.obolibrary.org/obo/GO_0002055) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to adenine, a purine base." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:hjd" -- [endocytic vesicle lumen](http://purl.obolibrary.org/obo/GO_0071682) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0071682" +- [adenine binding](http://purl.obolibrary.org/obo/GO_0002055) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenine binding" -- [endocytic vesicle lumen](http://purl.obolibrary.org/obo/GO_0071682) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2010-02-18T04:21:53Z" +- [adenine binding](http://purl.obolibrary.org/obo/GO_0002055) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "6-aminopurine binding" -- [endocytic vesicle lumen](http://purl.obolibrary.org/obo/GO_0071682) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "mah" +- [adenine binding](http://purl.obolibrary.org/obo/GO_0002055) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -- [endocytic vesicle lumen](http://purl.obolibrary.org/obo/GO_0071682) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "cellular_component" +- Class: [adenine binding](http://purl.obolibrary.org/obo/GO_0002055) -- Class: [endocytic vesicle lumen](http://purl.obolibrary.org/obo/GO_0071682) +- [adenine binding](http://purl.obolibrary.org/obo/GO_0002055) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708)) -- [endocytic vesicle lumen](http://purl.obolibrary.org/obo/GO_0071682) EquivalentTo [membrane-enclosed lumen](http://purl.obolibrary.org/obo/GO_0031974) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139)) +- [adenine binding](http://purl.obolibrary.org/obo/GO_0002055) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) -- [endocytic vesicle lumen](http://purl.obolibrary.org/obo/GO_0071682) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) +- [adenine binding](http://purl.obolibrary.org/obo/GO_0002055) SubClassOf [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) -- [endocytic vesicle lumen](http://purl.obolibrary.org/obo/GO_0071682) SubClassOf [intracellular organelle lumen](http://purl.obolibrary.org/obo/GO_0070013) +### adenine biosynthetic process `http://purl.obolibrary.org/obo/GO_0046084` +#### Added +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenine biosynthetic process" -### endocytic vesicle membrane `http://purl.obolibrary.org/obo/GO_0030666` -#### Removed -- [endocytic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030666) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The lipid bilayer surrounding an endocytic vesicle." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenine anabolism" -- [endocytic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030666) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0030666" +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenine formation" -- [endocytic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030666) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "cellular_component" +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046084" -- [endocytic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030666) [label](http://www.w3.org/2000/01/rdf-schema#label) "endocytic vesicle membrane" +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenine synthesis" -- Class: [endocytic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030666) +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenine biosynthesis" -- [endocytic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030666) EquivalentTo [membrane](http://purl.obolibrary.org/obo/GO_0016020) and ([bounding layer of](http://purl.obolibrary.org/obo/RO_0002007) some [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139)) +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [endocytic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030666) SubClassOf [cytoplasmic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030659) +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [endocytic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030666) SubClassOf [bounding membrane of organelle](http://purl.obolibrary.org/obo/GO_0098588) +- Class: [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) -- [endocytic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030666) SubClassOf [bounding layer of](http://purl.obolibrary.org/obo/RO_0002007) some [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708)) -- [endocytic vesicle membrane](http://purl.obolibrary.org/obo/GO_0030666) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) SubClassOf [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) +- [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) SubClassOf [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) -### endocytosis `http://purl.obolibrary.org/obo/GO_0006897` -#### Removed -- [endocytosis](http://purl.obolibrary.org/obo/GO_0006897) EquivalentTo [vesicle-mediated transport](http://purl.obolibrary.org/obo/GO_0016192) and ([process has causal agent](http://purl.obolibrary.org/obo/RO_0002608) some [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139)) -- [endocytosis](http://purl.obolibrary.org/obo/GO_0006897) SubClassOf [process has causal agent](http://purl.obolibrary.org/obo/RO_0002608) some [endocytic vesicle](http://purl.obolibrary.org/obo/GO_0030139) +### adenine catabolic process `http://purl.obolibrary.org/obo/GO_0006146` #### Added -- [endocytosis](http://purl.obolibrary.org/obo/GO_0006897) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/25268"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) - -- [endocytosis](http://purl.obolibrary.org/obo/GO_0006897) SubClassOf [import into cell](http://purl.obolibrary.org/obo/GO_0098657) +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenine degradation" +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### endothelium of arteriole `http://purl.obolibrary.org/obo/UBERON_0001916` -#### Removed -- [endothelium of arteriole](http://purl.obolibrary.org/obo/UBERON_0001916) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenine catabolism" -- [endothelium of arteriole](http://purl.obolibrary.org/obo/UBERON_0001916) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006146" +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenine breakdown" +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenine catabolic process" -### enteroglial cell `http://purl.obolibrary.org/obo/CL_4040002` +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of adenine, 6-aminopurine, one of the 5 main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -#### Added -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- Class: [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) [label](http://www.w3.org/2000/01/rdf-schema#label) "enteroglial cell" +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708)) -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "enteric glial cell" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25170211" +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) SubClassOf [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11169131" +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) SubClassOf [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Glial cell that provides support to the enteric nervous system. It is involved in enteric neurotransmission, in maintaining the integrity of the mucosal barrier of the gut and serves as a link between the nervous and immune systems of the gut. In enteric nerve strands, glial processes ensheath multiaxonal bundles which distinguishes enteric glia from all other peripheral glia. Ultrastructurally, the most conspicuous trait of an enteroglial cell is the presence of 10 nm filaments, which criss-cross the cell body, form axial bundles in the processes and appear to firmly anchor the cells to the ganglionic surfaces. Similar to astrocytes, their main constituent is glial fibrillary acidic protein (GFAP)." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25975510" +- [adenine catabolic process](http://purl.obolibrary.org/obo/GO_0006146) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:17483847" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:16336493" +### adenine metabolic process `http://purl.obolibrary.org/obo/GO_0046083` -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) [date](http://purl.org/dc/terms/date) "2023-04-03T15:15:40Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +#### Added +- [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "enteric glia" - - [synonym_type_property](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) [PLURAL](http://purl.obolibrary.org/obo/uberon#PLURAL) +- [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenine metabolic process" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11169131" +- [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- Class: [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) +- [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046083" -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) EquivalentTo [glial cell](http://purl.obolibrary.org/obo/CL_0000125) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [enteric nervous system](http://purl.obolibrary.org/obo/UBERON_0002005)) +- [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenine metabolism" -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [enteric nervous system](http://purl.obolibrary.org/obo/UBERON_0002005) +- Class: [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) SubClassOf [glial cell](http://purl.obolibrary.org/obo/CL_0000125) +- [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708)) -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) SubClassOf [neural crest-derived structure](http://purl.obolibrary.org/obo/UBERON_0010313) +- [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) SubClassOf [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) -- [enteroglial cell](http://purl.obolibrary.org/obo/CL_4040002) SubClassOf [RO_0002292](http://purl.obolibrary.org/obo/RO_0002292) some [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) +- [adenine metabolic process](http://purl.obolibrary.org/obo/GO_0046083) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) -### ependymal cell `http://purl.obolibrary.org/obo/CL_0000065` +### adenine nucleotide transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0000295` #### Added -- [ependymal cell](http://purl.obolibrary.org/obo/CL_0000065) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0000295) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of adenine nucleotides (AMP, ADP, and ATP) from one side of a membrane to the other." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11566870" -- [ependymal cell](http://purl.obolibrary.org/obo/CL_0000065) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0000295) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenine nucleotide transmembrane transporter activity" +- [adenine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0000295) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -### epinephrine binding `http://purl.obolibrary.org/obo/GO_0051379` -#### Removed -- [epinephrine binding](http://purl.obolibrary.org/obo/GO_0051379) SubClassOf [catecholamine binding](http://purl.obolibrary.org/obo/GO_1901338) - -#### Added -- [epinephrine binding](http://purl.obolibrary.org/obo/GO_0051379) SubClassOf [binding](http://purl.obolibrary.org/obo/GO_0005488) +- [adenine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0000295) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0000295" +- [adenine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0000295) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-389652" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "PMP34-mediated exchange of cytosolic ATP for peroxisomal AMP" -### epinephrine biosynthetic process `http://purl.obolibrary.org/obo/GO_0042418` -#### Removed -- [epinephrine biosynthetic process](http://purl.obolibrary.org/obo/GO_0042418) SubClassOf [catecholamine biosynthetic process](http://purl.obolibrary.org/obo/GO_0042423) +- Class: [adenine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0000295) -#### Added -- [epinephrine biosynthetic process](http://purl.obolibrary.org/obo/GO_0042418) SubClassOf [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) +- [adenine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0000295) EquivalentTo [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293)) +- [adenine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0000295) SubClassOf [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) -### epinephrine catabolic process `http://purl.obolibrary.org/obo/GO_0042419` -#### Removed -- [epinephrine catabolic process](http://purl.obolibrary.org/obo/GO_0042419) SubClassOf [catecholamine catabolic process](http://purl.obolibrary.org/obo/GO_0042424) +- [adenine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0000295) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) -#### Added -- [epinephrine catabolic process](http://purl.obolibrary.org/obo/GO_0042419) SubClassOf [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) +- [adenine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0000295) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [adenine nucleotide transport](http://purl.obolibrary.org/obo/GO_0051503) -### epinephrine metabolic process `http://purl.obolibrary.org/obo/GO_0042414` -#### Removed -- [epinephrine metabolic process](http://purl.obolibrary.org/obo/GO_0042414) SubClassOf [catecholamine metabolic process](http://purl.obolibrary.org/obo/GO_0006584) +### adenine nucleotide transport `http://purl.obolibrary.org/obo/GO_0051503` #### Added -- [epinephrine metabolic process](http://purl.obolibrary.org/obo/GO_0042414) SubClassOf [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) +- [adenine nucleotide transport](http://purl.obolibrary.org/obo/GO_0051503) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [adenine nucleotide transport](http://purl.obolibrary.org/obo/GO_0051503) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0051503" -### epinephrine secretion `http://purl.obolibrary.org/obo/GO_0048242` -#### Removed -- [epinephrine secretion](http://purl.obolibrary.org/obo/GO_0048242) SubClassOf [catecholamine secretion](http://purl.obolibrary.org/obo/GO_0050432) - -#### Added -- [epinephrine secretion](http://purl.obolibrary.org/obo/GO_0048242) SubClassOf [secretion](http://purl.obolibrary.org/obo/GO_0046903) +- [adenine nucleotide transport](http://purl.obolibrary.org/obo/GO_0051503) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of adenine nucleotides, ATP, ADP, and/or AMP, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" +- [adenine nucleotide transport](http://purl.obolibrary.org/obo/GO_0051503) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenine nucleotide transport" -### epinephrine secretion, neurotransmission `http://purl.obolibrary.org/obo/GO_0061529` -#### Removed -- [epinephrine secretion, neurotransmission](http://purl.obolibrary.org/obo/GO_0061529) SubClassOf [catecholamine secretion, neurotransmission](http://purl.obolibrary.org/obo/GO_0160043) +- Class: [adenine nucleotide transport](http://purl.obolibrary.org/obo/GO_0051503) -#### Added -- [epinephrine secretion, neurotransmission](http://purl.obolibrary.org/obo/GO_0061529) SubClassOf [neurotransmitter secretion](http://purl.obolibrary.org/obo/GO_0007269) +- [adenine nucleotide transport](http://purl.obolibrary.org/obo/GO_0051503) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293)) +- [adenine nucleotide transport](http://purl.obolibrary.org/obo/GO_0051503) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) -### epinephrine transport `http://purl.obolibrary.org/obo/GO_0048241` -#### Removed -- [epinephrine transport](http://purl.obolibrary.org/obo/GO_0048241) SubClassOf [catecholamine transport](http://purl.obolibrary.org/obo/GO_0051937) +- [adenine nucleotide transport](http://purl.obolibrary.org/obo/GO_0051503) SubClassOf [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) -#### Added -- [epinephrine transport](http://purl.obolibrary.org/obo/GO_0048241) SubClassOf [transport](http://purl.obolibrary.org/obo/GO_0006810) +### adenine transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015207` -### epinephrine uptake `http://purl.obolibrary.org/obo/GO_0051625` -#### Removed -- [epinephrine uptake](http://purl.obolibrary.org/obo/GO_0051625) SubClassOf [catecholamine uptake](http://purl.obolibrary.org/obo/GO_0090493) +#### Added +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenine transmembrane transporter activity" +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015207" +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -### epiphysis `http://purl.obolibrary.org/obo/UBERON_0001437` -#### Removed -- [epiphysis](http://purl.obolibrary.org/obo/UBERON_0001437) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "RHEA:34999" -- [epiphysis](http://purl.obolibrary.org/obo/UBERON_0001437) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of adenine, 6-aminopurine, from one side of a membrane to the other." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-163215" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "SLC25A5,6 dimers exchange ATP for ADP across the mitochondrial inner membrane" +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-5672027" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "ARL2:GTP:ARL2BP:SLC25A4 dimer exchanges ATP for ADP across the mitochondrial inner membrane" -### epithelial cell of lung `http://purl.obolibrary.org/obo/CL_0000082` +- Class: [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) -#### Added -- [epithelial cell of lung](http://purl.obolibrary.org/obo/CL_0000082) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708)) -- [epithelial cell of lung](http://purl.obolibrary.org/obo/CL_0000082) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) SubClassOf [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) -### epithelial cell of tracheobronchial tree `http://purl.obolibrary.org/obo/CL_0002202` +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [adenine transport](http://purl.obolibrary.org/obo/GO_0015853) -#### Added -- [epithelial cell of tracheobronchial tree](http://purl.obolibrary.org/obo/CL_0002202) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) -- [epithelial cell of tracheobronchial tree](http://purl.obolibrary.org/obo/CL_0002202) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenine transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015207) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) -### erythroblast `http://purl.obolibrary.org/obo/CL_0000765` +### adenine transport `http://purl.obolibrary.org/obo/GO_0015853` #### Added -- [erythroblast](http://purl.obolibrary.org/obo/CL_0000765) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) - +- [adenine transport](http://purl.obolibrary.org/obo/GO_0015853) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenine transmembrane transport" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -### erythrocyte `http://purl.obolibrary.org/obo/CL_0000232` +- [adenine transport](http://purl.obolibrary.org/obo/GO_0015853) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015853" -#### Added -- [erythrocyte](http://purl.obolibrary.org/obo/CL_0000232) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [adenine transport](http://purl.obolibrary.org/obo/GO_0015853) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenine transport" +- [adenine transport](http://purl.obolibrary.org/obo/GO_0015853) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of adenine, 6-aminopurine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -### erythroid progenitor cell `http://purl.obolibrary.org/obo/CL_0000038` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -#### Added -- [erythroid progenitor cell](http://purl.obolibrary.org/obo/CL_0000038) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [adenine transport](http://purl.obolibrary.org/obo/GO_0015853) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- Class: [adenine transport](http://purl.obolibrary.org/obo/GO_0015853) -### ethmoid bone `http://purl.obolibrary.org/obo/UBERON_0001679` +- [adenine transport](http://purl.obolibrary.org/obo/GO_0015853) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708)) -#### Added -- [ethmoid bone](http://purl.obolibrary.org/obo/UBERON_0001679) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenine transport](http://purl.obolibrary.org/obo/GO_0015853) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) -- [ethmoid bone](http://purl.obolibrary.org/obo/UBERON_0001679) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenine transport](http://purl.obolibrary.org/obo/GO_0015853) SubClassOf [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) -### exocrine cell `http://purl.obolibrary.org/obo/CL_0000152` +### adenosine `http://purl.obolibrary.org/obo/CHEBI_16335` #### Added -- [exocrine cell](http://purl.obolibrary.org/obo/CL_0000152) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) - +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reaxys:93029" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Reaxys" -### extensor carpi radialis brevis muscle `http://purl.obolibrary.org/obo/UBERON_0001525` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -#### Added -- [extensor carpi radialis brevis muscle](http://purl.obolibrary.org/obo/UBERON_0001525) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:ADENOSINE" -- [extensor carpi radialis brevis muscle](http://purl.obolibrary.org/obo/UBERON_0001525) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:40558" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:22237" -### extensor carpi radialis longus muscle `http://purl.obolibrary.org/obo/UBERON_0001524` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenosine" -#### Added -- [extensor carpi radialis longus muscle](http://purl.obolibrary.org/obo/UBERON_0001524) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13734" -- [extensor carpi radialis longus muscle](http://purl.obolibrary.org/obo/UBERON_0001524) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18000974" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "9-beta-D-Ribofuranosidoadenine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" -### extensor carpi ulnaris muscle `http://purl.obolibrary.org/obo/UBERON_0001526` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adenocard" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [BRAND_NAME](http://purl.obolibrary.org/obo/chebi#BRAND_NAME) -#### Added -- [extensor carpi ulnaris muscle](http://purl.obolibrary.org/obo/UBERON_0001526) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" -- [extensor carpi ulnaris muscle](http://purl.obolibrary.org/obo/UBERON_0001526) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank:DB00640" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "9-beta-D-ribofuranosyl-9H-purin-6-amine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### extensor digiti minimi muscle `http://purl.obolibrary.org/obo/UBERON_0007614` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "YMDB:YMDB00058" -#### Added -- [extensor digiti minimi muscle](http://purl.obolibrary.org/obo/UBERON_0007614) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:D00045" -- [extensor digiti minimi muscle](http://purl.obolibrary.org/obo/UBERON_0007614) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HMDB:HMDB0000050" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Ade-Rib" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CBN" -### extensor digitorum brevis pes `http://purl.obolibrary.org/obo/UBERON_0000372` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "OIRDTQYFTABQOQ-KQYNXXCUSA-N" -#### Added -- [extensor digitorum brevis pes](http://purl.obolibrary.org/obo/UBERON_0000372) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:16917093" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [extensor digitorum brevis pes](http://purl.obolibrary.org/obo/UBERON_0000372) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "267.09675" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ribonucleoside composed of a molecule of adenine attached to a ribofuranose moiety via a beta-N(9)-glycosidic bond." -### extensor digitorum longus `http://purl.obolibrary.org/obo/UBERON_0001386` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11213237" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -#### Added -- [extensor digitorum longus](http://purl.obolibrary.org/obo/UBERON_0001386) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:323854" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [extensor digitorum longus](http://purl.obolibrary.org/obo/UBERON_0001386) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Beilstein:93029" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Beilstein" -### extensor pollicis brevis muscle `http://purl.obolibrary.org/obo/UBERON_0017618` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:58-61-7" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "KEGG COMPOUND" -#### Added -- [extensor pollicis brevis muscle](http://purl.obolibrary.org/obo/UBERON_0017618) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Adenosine" -- [extensor pollicis brevis muscle](http://purl.obolibrary.org/obo/UBERON_0017618) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -### extensor pollicis longus muscle `http://purl.obolibrary.org/obo/UBERON_0003234` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adenyldeoxyriboside" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" -#### Added -- [extensor pollicis longus muscle](http://purl.obolibrary.org/obo/UBERON_0003234) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [mass](http://purl.obolibrary.org/obo/chebi/mass) "267.24152" -- [extensor pollicis longus muscle](http://purl.obolibrary.org/obo/UBERON_0003234) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Desoxyadenosine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11978011" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -### external intercostal muscle `http://purl.obolibrary.org/obo/UBERON_0005441` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ECMDB:ECMDB00050" -#### Added -- [external intercostal muscle](http://purl.obolibrary.org/obo/UBERON_0005441) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Deoxyadenosine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" -- [external intercostal muscle](http://purl.obolibrary.org/obo/UBERON_0005441) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adenoscan" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [BRAND_NAME](http://purl.obolibrary.org/obo/chebi#BRAND_NAME) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" -### extra-ocular muscle `http://purl.obolibrary.org/obo/UBERON_0001601` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:16335" -#### Added -- [extra-ocular muscle](http://purl.obolibrary.org/obo/UBERON_0001601) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adenine Deoxyribonucleoside" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" -- [extra-ocular muscle](http://purl.obolibrary.org/obo/UBERON_0001601) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:58-61-7" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "NIST Chemistry WebBook" -### extraembryonic cell `http://purl.obolibrary.org/obo/CL_0000349` -#### Removed -- [extraembryonic cell](http://purl.obolibrary.org/obo/CL_0000349) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PDBeChem:ADN" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Adenosine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C10H13N5O4" -### extrinsic muscle of tongue `http://purl.obolibrary.org/obo/UBERON_0001575` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -#### Added -- [extrinsic muscle of tongue](http://purl.obolibrary.org/obo/UBERON_0001575) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:16183671" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [extrinsic muscle of tongue](http://purl.obolibrary.org/obo/UBERON_0001575) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adenosin" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Gmelin:53385" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Gmelin" -### eye photoreceptor cell `http://purl.obolibrary.org/obo/CL_0000287` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11820865" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -#### Added -- [eye photoreceptor cell](http://purl.obolibrary.org/obo/CL_0000287) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KNApSAcK:C00007444" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### eye_upper_slim `http://purl.obolibrary.org/obo/cl#eye_upper_slim` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "LINCS:LSM-28568" -#### Added -- AnnotationProperty: [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:40825" -- [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) SubPropertyOf: [subset_property](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:17190852" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ADENOSINE" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PDBeChem" -### female germ line stem cell `http://purl.obolibrary.org/obo/CL_0000022` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "beta-D-Adenosine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" -#### Added -- [female germ line stem cell](http://purl.obolibrary.org/obo/CL_0000022) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A stem cell that is the precursor of female gametes." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1016/j.stem.2012.05.016" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:2472" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Ado" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CBN" -### female pubococcygeus muscle `http://purl.obolibrary.org/obo/UBERON_0011532` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Drug_Central:90" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "DrugCentral" -#### Added -- [female pubococcygeus muscle](http://purl.obolibrary.org/obo/UBERON_0011532) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/C10H13N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,6-7,10,16-18H,1H2,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1" -- [female pubococcygeus muscle](http://purl.obolibrary.org/obo/UBERON_0011532) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "6-Amino-9-beta-D-ribofuranosyl-9H-purine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "9-beta-D-Ribofuranosyl-9H-purin-6-amine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChemIDplus" -### femur `http://purl.obolibrary.org/obo/UBERON_0000981` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:40906" -#### Added -- [femur](http://purl.obolibrary.org/obo/UBERON_0000981) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CAS:58-61-7" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ChemIDplus" -- [femur](http://purl.obolibrary.org/obo/UBERON_0000981) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00212" +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Adenocor" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [BRAND_NAME](http://purl.obolibrary.org/obo/chebi#BRAND_NAME) -### fibroblast of lung `http://purl.obolibrary.org/obo/CL_0002553` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DrugBank" -#### Added -- [fibroblast of lung](http://purl.obolibrary.org/obo/CL_0002553) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -- [fibroblast of lung](http://purl.obolibrary.org/obo/CL_0002553) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [fundamental metabolite](http://purl.obolibrary.org/obo/CHEBI_78675) -### fibula `http://purl.obolibrary.org/obo/UBERON_0001446` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [human metabolite](http://purl.obolibrary.org/obo/CHEBI_77746) -#### Added -- [fibula](http://purl.obolibrary.org/obo/UBERON_0001446) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) SubClassOf [has_functional_parent](http://purl.obolibrary.org/obo/chebi#has_functional_parent) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) -- [fibula](http://purl.obolibrary.org/obo/UBERON_0001446) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [vasodilator agent](http://purl.obolibrary.org/obo/CHEBI_35620) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [analgesic](http://purl.obolibrary.org/obo/CHEBI_35480) -### fifth lumbar spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006447` +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) SubClassOf [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) -#### Added -- [fifth lumbar spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006447) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [anti-arrhythmia drug](http://purl.obolibrary.org/obo/CHEBI_38070) -- [fifth lumbar spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006447) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) SubClassOf [adenosines](http://purl.obolibrary.org/obo/CHEBI_22260) -### fifth sacral spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006464` +### adenosine 5'-phosphate `http://purl.obolibrary.org/obo/CHEBI_37096` #### Added -- [fifth sacral spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006464) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37096) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:37096" -- [fifth sacral spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006464) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37096) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenosine 5'-phosphate" +- [adenosine 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37096) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "adenosine 5'-phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### fifth thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006453` +- [adenosine 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37096) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -#### Added -- [fifth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006453) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37096) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [fifth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006453) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [adenosine 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37096) +- [adenosine 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37096) SubClassOf [adenosine phosphate](http://purl.obolibrary.org/obo/CHEBI_22256) -### first lumbar spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006448` -#### Added -- [first lumbar spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006448) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### adenosine biosynthetic process `http://purl.obolibrary.org/obo/GO_0046086` -- [first lumbar spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006448) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine biosynthesis" +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine anabolism" -### first sacral spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006460` +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine formation" -#### Added -- [first sacral spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006460) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenosine biosynthetic process" -- [first sacral spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006460) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046086" +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -### first thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006457` +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine synthesis" -#### Added -- [first thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006457) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [first thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006457) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335)) -### flexor carpi radialis muscle `http://purl.obolibrary.org/obo/UBERON_0001521` +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) SubClassOf [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) -#### Added -- [flexor carpi radialis muscle](http://purl.obolibrary.org/obo/UBERON_0001521) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) SubClassOf [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) -- [flexor carpi radialis muscle](http://purl.obolibrary.org/obo/UBERON_0001521) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046086) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) -### flexor carpi ulnaris muscle `http://purl.obolibrary.org/obo/UBERON_0001522` +### adenosine catabolic process `http://purl.obolibrary.org/obo/GO_0006154` #### Added -- [flexor carpi ulnaris muscle](http://purl.obolibrary.org/obo/UBERON_0001522) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "adenosine phosphorolysis" -- [flexor carpi ulnaris muscle](http://purl.obolibrary.org/obo/UBERON_0001522) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine catabolism" +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -### flexor digitorum brevis muscle `http://purl.obolibrary.org/obo/UBERON_0014380` +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenosine catabolic process" -#### Added -- [flexor digitorum brevis muscle](http://purl.obolibrary.org/obo/UBERON_0014380) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine degradation" -- [flexor digitorum brevis muscle](http://purl.obolibrary.org/obo/UBERON_0014380) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine breakdown" +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006154" -### flexor digitorum profundus `http://purl.obolibrary.org/obo/UBERON_0001523` +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [flexor digitorum profundus](http://purl.obolibrary.org/obo/UBERON_0001523) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0006156" -- [flexor digitorum profundus](http://purl.obolibrary.org/obo/UBERON_0001523) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335)) -### flexor digitorum superficialis `http://purl.obolibrary.org/obo/UBERON_0003222` +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) -#### Added -- [flexor digitorum superficialis](http://purl.obolibrary.org/obo/UBERON_0003222) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) SubClassOf [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) -- [flexor digitorum superficialis](http://purl.obolibrary.org/obo/UBERON_0003222) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine catabolic process](http://purl.obolibrary.org/obo/GO_0006154) SubClassOf [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) -### flexor hallucis brevis muscle `http://purl.obolibrary.org/obo/UBERON_0011022` +### adenosine metabolic process `http://purl.obolibrary.org/obo/GO_0046085` #### Added -- [flexor hallucis brevis muscle](http://purl.obolibrary.org/obo/UBERON_0011022) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [flexor hallucis brevis muscle](http://purl.obolibrary.org/obo/UBERON_0011022) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" +- [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### flexor hallucis longus `http://purl.obolibrary.org/obo/UBERON_0001392` +- [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "adenosine metabolism" -#### Added -- [flexor hallucis longus](http://purl.obolibrary.org/obo/UBERON_0001392) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenosine metabolic process" -- [flexor hallucis longus](http://purl.obolibrary.org/obo/UBERON_0001392) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046085" +- Class: [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) -### flexor pollicis brevis muscle `http://purl.obolibrary.org/obo/UBERON_0011012` +- [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335)) -#### Added -- [flexor pollicis brevis muscle](http://purl.obolibrary.org/obo/UBERON_0011012) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) SubClassOf [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) -- [flexor pollicis brevis muscle](http://purl.obolibrary.org/obo/UBERON_0011012) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine metabolic process](http://purl.obolibrary.org/obo/GO_0046085) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) -### flexor pollicis longus muscle `http://purl.obolibrary.org/obo/UBERON_0008446` +### adenosine phosphate `http://purl.obolibrary.org/obo/CHEBI_22256` #### Added -- [flexor pollicis longus muscle](http://purl.obolibrary.org/obo/UBERON_0008446) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [flexor pollicis longus muscle](http://purl.obolibrary.org/obo/UBERON_0008446) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine phosphate](http://purl.obolibrary.org/obo/CHEBI_22256) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "adenosine phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [adenosine phosphate](http://purl.obolibrary.org/obo/CHEBI_22256) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:22256" -### folliculostellate cell of pars distalis of adenohypophysis `http://purl.obolibrary.org/obo/CL_0002177` -#### Removed -- [folliculostellate cell of pars distalis of adenohypophysis](http://purl.obolibrary.org/obo/CL_0002177) SubClassOf [neural cell](http://purl.obolibrary.org/obo/CL_0002319) +- [adenosine phosphate](http://purl.obolibrary.org/obo/CHEBI_22256) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenosine phosphate" +- [adenosine phosphate](http://purl.obolibrary.org/obo/CHEBI_22256) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [adenosine phosphate](http://purl.obolibrary.org/obo/CHEBI_22256) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### foramen spinosum of sphenoid bone `http://purl.obolibrary.org/obo/UBERON_0016492` +- Class: [adenosine phosphate](http://purl.obolibrary.org/obo/CHEBI_22256) -#### Added -- [foramen spinosum of sphenoid bone](http://purl.obolibrary.org/obo/UBERON_0016492) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine phosphate](http://purl.obolibrary.org/obo/CHEBI_22256) SubClassOf [has_functional_parent](http://purl.obolibrary.org/obo/chebi#has_functional_parent) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) -- [foramen spinosum of sphenoid bone](http://purl.obolibrary.org/obo/UBERON_0016492) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine phosphate](http://purl.obolibrary.org/obo/CHEBI_22256) SubClassOf [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) -### fourth lumbar spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006451` +### adenosine transport `http://purl.obolibrary.org/obo/GO_0032238` #### Added -- [fourth lumbar spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006451) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [fourth lumbar spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006451) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032238" -### fourth sacral spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006463` - -#### Added -- [fourth sacral spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006463) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenosine transport" -- [fourth sacral spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006463) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of adenosine, adenine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- Class: [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) -### fourth thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006452` +- [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335)) -#### Added -- [fourth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006452) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [adenosine](http://purl.obolibrary.org/obo/CHEBI_16335) -- [fourth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006452) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) SubClassOf [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) -### frontal cortex `http://purl.obolibrary.org/obo/UBERON_0001870` +### adenosines `http://purl.obolibrary.org/obo/CHEBI_22260` #### Added -- [frontal cortex](http://purl.obolibrary.org/obo/UBERON_0001870) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenosines](http://purl.obolibrary.org/obo/CHEBI_22260) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [frontal cortex](http://purl.obolibrary.org/obo/UBERON_0001870) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosines](http://purl.obolibrary.org/obo/CHEBI_22260) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenosines" +- [adenosines](http://purl.obolibrary.org/obo/CHEBI_22260) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any purine ribonucleoside that is a derivative of adenosine." -### frontal process of maxilla `http://purl.obolibrary.org/obo/UBERON_0013767` +- [adenosines](http://purl.obolibrary.org/obo/CHEBI_22260) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [frontal process of maxilla](http://purl.obolibrary.org/obo/UBERON_0013767) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenosines](http://purl.obolibrary.org/obo/CHEBI_22260) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:22260" -- [frontal process of maxilla](http://purl.obolibrary.org/obo/UBERON_0013767) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [adenosines](http://purl.obolibrary.org/obo/CHEBI_22260) +- [adenosines](http://purl.obolibrary.org/obo/CHEBI_22260) SubClassOf [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) -### frontal process of zygomatic bone `http://purl.obolibrary.org/obo/UBERON_0012110` +- [adenosines](http://purl.obolibrary.org/obo/CHEBI_22260) SubClassOf [has_functional_parent](http://purl.obolibrary.org/obo/chebi#has_functional_parent) some [adenine](http://purl.obolibrary.org/obo/CHEBI_16708) -#### Added -- [frontal process of zygomatic bone](http://purl.obolibrary.org/obo/UBERON_0012110) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [frontal process of zygomatic bone](http://purl.obolibrary.org/obo/UBERON_0012110) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### adenyl nucleotide `http://purl.obolibrary.org/obo/CHEBI_61293` +#### Added +- [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenyl nucleotide" -### fused sacrum `http://purl.obolibrary.org/obo/UBERON_0003690` +- [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:61293" -#### Added -- [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "adenine nucleotide" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "SUBMITTER" -### gastrocnemius `http://purl.obolibrary.org/obo/UBERON_0001388` +- [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A nucleotide having adenine as the base." -#### Added -- [gastrocnemius](http://purl.obolibrary.org/obo/UBERON_0001388) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) -- [gastrocnemius](http://purl.obolibrary.org/obo/UBERON_0001388) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) SubClassOf [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) -### gastrocnemius lateralis `http://purl.obolibrary.org/obo/UBERON_0011908` +### adenyl nucleotide binding `http://purl.obolibrary.org/obo/GO_0030554` #### Added -- [gastrocnemius lateralis](http://purl.obolibrary.org/obo/UBERON_0011908) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [gastrocnemius lateralis](http://purl.obolibrary.org/obo/UBERON_0011908) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenyl nucleotide binding](http://purl.obolibrary.org/obo/GO_0030554) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to an adenyl nucleotide, an adenosine esterified with (ortho)phosphate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" +- [adenyl nucleotide binding](http://purl.obolibrary.org/obo/GO_0030554) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -### gastrocnemius medialis `http://purl.obolibrary.org/obo/UBERON_0011907` +- [adenyl nucleotide binding](http://purl.obolibrary.org/obo/GO_0030554) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_chembl](http://purl.obolibrary.org/obo/go#goslim_chembl) -#### Added -- [gastrocnemius medialis](http://purl.obolibrary.org/obo/UBERON_0011907) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenyl nucleotide binding](http://purl.obolibrary.org/obo/GO_0030554) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenyl nucleotide binding" -- [gastrocnemius medialis](http://purl.obolibrary.org/obo/UBERON_0011907) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [adenyl nucleotide binding](http://purl.obolibrary.org/obo/GO_0030554) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0030554" +- Class: [adenyl nucleotide binding](http://purl.obolibrary.org/obo/GO_0030554) -### generically dependent continuant `http://purl.obolibrary.org/obo/BFO_0000031` +- [adenyl nucleotide binding](http://purl.obolibrary.org/obo/GO_0030554) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293)) -#### Added -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) [label](http://www.w3.org/2000/01/rdf-schema#label) "generically dependent continuant"@en +- [adenyl nucleotide binding](http://purl.obolibrary.org/obo/GO_0030554) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) [IAO_0000602](http://purl.obolibrary.org/obo/IAO_0000602) "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] " - - [IAO_0010000](http://purl.obolibrary.org/obo/IAO_0010000) [074-001](http://purl.obolibrary.org/obo/bfo/axiom/074-001) +- [adenyl nucleotide binding](http://purl.obolibrary.org/obo/GO_0030554) SubClassOf [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en - - [IAO_0010000](http://purl.obolibrary.org/obo/IAO_0010000) [074-001](http://purl.obolibrary.org/obo/bfo/axiom/074-001) -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) [example of usage](http://purl.obolibrary.org/obo/IAO_0000112) "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity."@en +### adenyl ribonucleotide `http://purl.obolibrary.org/obo/CHEBI_61296` -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) [example of usage](http://purl.obolibrary.org/obo/IAO_0000112) "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule."@en +#### Added +- [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A purine riboncleotide where adenine is the purine." -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time."@en +- [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) [example of usage](http://purl.obolibrary.org/obo/IAO_0000112) "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop"@en +- [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenyl ribonucleotide" -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) [BFO_0000180](http://purl.obolibrary.org/obo/BFO_0000180) "GenericallyDependentContinuant" +- [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "adenine ribonucleotide" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "SUBMITTER" -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) [BFO_0000179](http://purl.obolibrary.org/obo/BFO_0000179) "gdc" +- [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) [isDefinedBy](http://www.w3.org/2000/01/rdf-schema#isDefinedBy) [bfo.owl](http://purl.obolibrary.org/obo/bfo.owl) +- [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:61296" -- Class: [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) +- Class: [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) SubClassOf [continuant](http://purl.obolibrary.org/obo/BFO_0000002) +- [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) SubClassOf [adenyl nucleotide](http://purl.obolibrary.org/obo/CHEBI_61293) -- [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) only [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) +- [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) SubClassOf [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) -### genioglossus muscle `http://purl.obolibrary.org/obo/UBERON_0001571` +### adenyl ribonucleotide binding `http://purl.obolibrary.org/obo/GO_0032559` #### Added -- [genioglossus muscle](http://purl.obolibrary.org/obo/UBERON_0001571) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [genioglossus muscle](http://purl.obolibrary.org/obo/UBERON_0001571) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenyl ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032559) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- [adenyl ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032559) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to an adenyl ribonucleotide, any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -### geniohyoid muscle `http://purl.obolibrary.org/obo/UBERON_0001565` +- [adenyl ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032559) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032559" -#### Added -- [geniohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001565) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [adenyl ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032559) [label](http://www.w3.org/2000/01/rdf-schema#label) "adenyl ribonucleotide binding" -- [geniohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001565) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [adenyl ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032559) +- [adenyl ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032559) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296)) -### germ line stem cell `http://purl.obolibrary.org/obo/CL_0000014` +- [adenyl ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032559) SubClassOf [adenyl nucleotide binding](http://purl.obolibrary.org/obo/GO_0030554) -#### Added -- [germ line stem cell](http://purl.obolibrary.org/obo/CL_0000014) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00004861" +- [adenyl ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032559) SubClassOf [purine ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032555) -- [germ line stem cell](http://purl.obolibrary.org/obo/CL_0000014) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A stem cell that is the precursor of gametes." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1016/j.stem.2012.05.016" +- [adenyl ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032559) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [adenyl ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_61296) -### germinal center `http://purl.obolibrary.org/obo/UBERON_0010754` +### aldopentose `http://purl.obolibrary.org/obo/CHEBI_33916` #### Added -- [germinal center](http://purl.obolibrary.org/obo/UBERON_0010754) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) [label](http://www.w3.org/2000/01/rdf-schema#label) "aldopentose" -- [germinal center](http://purl.obolibrary.org/obo/UBERON_0010754) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "aldopentoses" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### glial fibrillary acidic protein `http://purl.obolibrary.org/obo/PR_000007939` +- [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:10723607" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -#### Added -- [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) [id](http://www.geneontology.org/formats/oboInOwl#id) "PR:000007939" +- [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "GFAP" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [PRO-short-label](http://purl.obolibrary.org/obo/pr#PRO-short-label) +- [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:33916" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PRO:DNx" +- [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A pentose with a (potential) aldehyde group at one end." -- [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) [label](http://www.w3.org/2000/01/rdf-schema#label) "glial fibrillary acidic protein" +- [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "aldopentose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A protein that is a translation product of the human GFAP gene or a 1:1 ortholog thereof." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PRO:DNx" +- Class: [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) -- [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Category=gene. Requested by=CL." +- [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) SubClassOf [aldose](http://purl.obolibrary.org/obo/CHEBI_15693) -- [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "protein" +- [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) SubClassOf [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) -- Class: [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) -- [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) SubClassOf [protein](http://purl.obolibrary.org/obo/CHEBI_36080) +### aldopentose phosphate `http://purl.obolibrary.org/obo/CHEBI_25900` -- [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) SubClassOf [protein](http://purl.obolibrary.org/obo/PR_000000001) +#### Added +- [aldopentose phosphate](http://purl.obolibrary.org/obo/CHEBI_25900) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [aldopentose phosphate](http://purl.obolibrary.org/obo/CHEBI_25900) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "aldopentose phosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### glial fibrillary acidic protein (human) `http://purl.obolibrary.org/obo/PR_P14136` +- [aldopentose phosphate](http://purl.obolibrary.org/obo/CHEBI_25900) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-1253311" - - [label](http://www.w3.org/2000/01/rdf-schema#label) "PR:P14136 located_in GO:0005829" +- [aldopentose phosphate](http://purl.obolibrary.org/obo/CHEBI_25900) [label](http://www.w3.org/2000/01/rdf-schema#label) "aldopentose phosphate" -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "hGFAP" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [PRO-short-label](http://purl.obolibrary.org/obo/pr#PRO-short-label) +- [aldopentose phosphate](http://purl.obolibrary.org/obo/CHEBI_25900) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:25900" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PRO:DNx" +- [aldopentose phosphate](http://purl.obolibrary.org/obo/CHEBI_25900) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "aldopentose phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProtKB:P14136" +- Class: [aldopentose phosphate](http://purl.obolibrary.org/obo/CHEBI_25900) -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) [id](http://www.geneontology.org/formats/oboInOwl#id) "PR:P14136" +- [aldopentose phosphate](http://purl.obolibrary.org/obo/CHEBI_25900) SubClassOf [aldose phosphate](http://purl.obolibrary.org/obo/CHEBI_35131) -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) [label](http://www.w3.org/2000/01/rdf-schema#label) "glial fibrillary acidic protein (human)" +- [aldopentose phosphate](http://purl.obolibrary.org/obo/CHEBI_25900) SubClassOf [pentose phosphate](http://purl.obolibrary.org/obo/CHEBI_84055) -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Category=organism-gene." -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "GFAP" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProtKB:P14136" +### aldose phosphate `http://purl.obolibrary.org/obo/CHEBI_35131` - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [Gene-based](http://purl.obolibrary.org/obo/pr#Gene-based) +#### Added +- [aldose phosphate](http://purl.obolibrary.org/obo/CHEBI_35131) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-9625195" - - [label](http://www.w3.org/2000/01/rdf-schema#label) "PR:P14136 located_in GO:0005765" +- [aldose phosphate](http://purl.obolibrary.org/obo/CHEBI_35131) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "aldose phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "protein" +- [aldose phosphate](http://purl.obolibrary.org/obo/CHEBI_35131) [label](http://www.w3.org/2000/01/rdf-schema#label) "aldose phosphate" -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A glial fibrillary acidic protein that is encoded in the genome of human." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProtKB:P14136" +- [aldose phosphate](http://purl.obolibrary.org/obo/CHEBI_35131) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PRO:DNx" +- [aldose phosphate](http://purl.obolibrary.org/obo/CHEBI_35131) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35131" -- Class: [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) +- Class: [aldose phosphate](http://purl.obolibrary.org/obo/CHEBI_35131) -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) EquivalentTo [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) and ([only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606)) +- [aldose phosphate](http://purl.obolibrary.org/obo/CHEBI_35131) SubClassOf [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) SubClassOf [Homo sapiens protein](http://purl.obolibrary.org/obo/PR_000029067) -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) SubClassOf [only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### aminoacyltransferase activity `http://purl.obolibrary.org/obo/GO_0016755` +#### Removed +- [aminoacyltransferase activity](http://purl.obolibrary.org/obo/GO_0016755) SubClassOf [catalytic activity, acting on a protein](http://purl.obolibrary.org/obo/GO_0140096) -- [glial fibrillary acidic protein (human)](http://purl.obolibrary.org/obo/PR_P14136) SubClassOf [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) -### glial fibrillary acidic protein (mouse) `http://purl.obolibrary.org/obo/PR_P03995` +### aminopurine `http://purl.obolibrary.org/obo/CHEBI_22527` #### Added -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "protein" - -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "GFAP (mouse)" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProtKB:P03995" - -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Category=organism-gene." +- [aminopurine](http://purl.obolibrary.org/obo/CHEBI_22527) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:22527" -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProtKB:P03995" +- [aminopurine](http://purl.obolibrary.org/obo/CHEBI_22527) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A glial fibrillary acidic protein that is encoded in the genome of mouse." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "OMA:P03995" +- [aminopurine](http://purl.obolibrary.org/obo/CHEBI_22527) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PRO:DNx" +- [aminopurine](http://purl.obolibrary.org/obo/CHEBI_22527) [label](http://www.w3.org/2000/01/rdf-schema#label) "aminopurine" -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "mGFAP" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [PRO-short-label](http://purl.obolibrary.org/obo/pr#PRO-short-label) - - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PRO:DNx" - -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) [id](http://www.geneontology.org/formats/oboInOwl#id) "PR:P03995" - -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) [label](http://www.w3.org/2000/01/rdf-schema#label) "glial fibrillary acidic protein (mouse)" - -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Gfap" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProtKB:P03995" +- [aminopurine](http://purl.obolibrary.org/obo/CHEBI_22527) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "aminopurines" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" - - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [Gene-based](http://purl.obolibrary.org/obo/pr#Gene-based) +- [aminopurine](http://purl.obolibrary.org/obo/CHEBI_22527) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any purine having at least one amino substituent." -- Class: [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) +- Class: [aminopurine](http://purl.obolibrary.org/obo/CHEBI_22527) -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) EquivalentTo [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) and ([only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Mus musculus](http://purl.obolibrary.org/obo/NCBITaxon_10090)) +- [aminopurine](http://purl.obolibrary.org/obo/CHEBI_22527) SubClassOf [purines](http://purl.obolibrary.org/obo/CHEBI_26401) -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) SubClassOf [only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Mus musculus](http://purl.obolibrary.org/obo/NCBITaxon_10090) -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) SubClassOf [Mus musculus protein](http://purl.obolibrary.org/obo/PR_000029032) +### anaerobic purine nucleobase catabolic process `http://purl.obolibrary.org/obo/GO_0019653` -- [glial fibrillary acidic protein (mouse)](http://purl.obolibrary.org/obo/PR_P03995) SubClassOf [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) +#### Added +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The anaerobic chemical reactions and pathways resulting in the breakdown of purine nucleobases, yielding energy in the form of ATP." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "anaerobic purine catabolic process" -### glioblast `http://purl.obolibrary.org/obo/CL_0000030` +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine fermentation" -#### Added -- [glioblast](http://purl.obolibrary.org/obo/CL_0000030) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [label](http://www.w3.org/2000/01/rdf-schema#label) "anaerobic purine nucleobase catabolic process" +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "anaerobic purine base catabolism" -### glomerular mesangial cell `http://purl.obolibrary.org/obo/CL_1000742` -#### Removed -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KUPO:0001032" +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base fermentation" -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "intraglomerular mesangial cell" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CL:cjm" +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:P164-PWY" -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) [label](http://www.w3.org/2000/01/rdf-schema#label) "glomerular mesangial cell" +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:PWY-5497" -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0019653" -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Like smooth muscle, a glomerular mesangial cell is contractile and possesses the filaments actin and myosin. The contractile mechanism is also similar to that of smooth muscle, with Ca2+/calmodulin-activated myosin light-chain kinase instigating myosin-actin cross-bridge cycling. Mesangial cell phagocytosis of apoptotic neutrophils involves a novel CD36-independent, alpha(v)beta3/TSP-mediated mechanism that is uncoupled from chemokine secretion, emphasizing the injury-limiting potential of mesangial cell phagocytosis of apoptotic cells." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9127003" +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://doi.org/10.1152/physrev.1998.78.3.723" +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "anaerobic purine base catabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:PWY-5044" -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Intraglomerular mesangial cells are specialized pericytes located among the glomerular capillaries within a renal corpuscle of a kidney." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Intraglomerular_mesangial_cell" +- Class: [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) -- Class: [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) EquivalentTo [fermentation](http://purl.obolibrary.org/obo/GO_0006113) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine](http://purl.obolibrary.org/obo/CHEBI_35584)) -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) EquivalentTo [kidney corpuscule cell](http://purl.obolibrary.org/obo/CL_1000612) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [glomerular mesangium](http://purl.obolibrary.org/obo/UBERON_0002320)) +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine](http://purl.obolibrary.org/obo/CHEBI_35584) -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) SubClassOf [phagocyte](http://purl.obolibrary.org/obo/CL_0000234) +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) SubClassOf [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) SubClassOf [renal interstitial pericyte](http://purl.obolibrary.org/obo/CL_1001318) +- [anaerobic purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0019653) SubClassOf [nitrogenous compound fermentation](http://purl.obolibrary.org/obo/GO_0019666) -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) SubClassOf [kidney corpuscule cell](http://purl.obolibrary.org/obo/CL_1000612) - - [is_inferred](http://www.geneontology.org/formats/oboInOwl#is_inferred) "true" -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) SubClassOf [capable of](http://purl.obolibrary.org/obo/RO_0002215) some [actin-mediated cell contraction](http://purl.obolibrary.org/obo/GO_0070252) +### analgesic `http://purl.obolibrary.org/obo/CHEBI_35480` -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) SubClassOf [capable of](http://purl.obolibrary.org/obo/RO_0002215) some [phagocytosis](http://purl.obolibrary.org/obo/GO_0006909) +#### Added +- [analgesic](http://purl.obolibrary.org/obo/CHEBI_35480) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35480" -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) SubClassOf [mesangial cell](http://purl.obolibrary.org/obo/CL_0000650) +- [analgesic](http://purl.obolibrary.org/obo/CHEBI_35480) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) SubClassOf [glomerular cell](http://purl.obolibrary.org/obo/CL_1000746) +- [analgesic](http://purl.obolibrary.org/obo/CHEBI_35480) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An agent capable of relieving pain without the loss of consciousness or without producing anaesthesia. In addition, analgesic is a role played by a compound which is exhibited by a capability to cause a reduction of pain symptoms." -- [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [glomerular mesangium](http://purl.obolibrary.org/obo/UBERON_0002320) +- [analgesic](http://purl.obolibrary.org/obo/CHEBI_35480) [label](http://www.w3.org/2000/01/rdf-schema#label) "analgesic" +- [analgesic](http://purl.obolibrary.org/obo/CHEBI_35480) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- Class: [analgesic](http://purl.obolibrary.org/obo/CHEBI_35480) -### glomerular mesangial cell development `http://purl.obolibrary.org/obo/GO_0072144` -#### Removed -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The process whose specific outcome is the progression of a glomerular mesangial cell in the kidney over time, from its formation to the mature structure." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mtg_kidney_jan10" +- [analgesic](http://purl.obolibrary.org/obo/CHEBI_35480) SubClassOf [pharmacological role](http://purl.obolibrary.org/obo/CHEBI_52210) -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [analgesic](http://purl.obolibrary.org/obo/CHEBI_35480) SubClassOf [drug](http://purl.obolibrary.org/obo/CHEBI_23888) -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) [label](http://www.w3.org/2000/01/rdf-schema#label) "glomerular mesangial cell development" -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0072144" +### anti-arrhythmia drug `http://purl.obolibrary.org/obo/CHEBI_38070` -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "mah" +#### Added +- [anti-arrhythmia drug](http://purl.obolibrary.org/obo/CHEBI_38070) [label](http://www.w3.org/2000/01/rdf-schema#label) "anti-arrhythmia drug" -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2010-02-24T01:53:13Z" +- [anti-arrhythmia drug](http://purl.obolibrary.org/obo/CHEBI_38070) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "antiarrhythmic agent" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- Class: [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) +- [anti-arrhythmia drug](http://purl.obolibrary.org/obo/CHEBI_38070) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) EquivalentTo [anatomical structure development](http://purl.obolibrary.org/obo/GO_0048856) and ([results in development of](http://purl.obolibrary.org/obo/RO_0002296) some [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742)) +- [anti-arrhythmia drug](http://purl.obolibrary.org/obo/CHEBI_38070) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:38070" -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) SubClassOf [epithelial cell development](http://purl.obolibrary.org/obo/GO_0002064) +- [anti-arrhythmia drug](http://purl.obolibrary.org/obo/CHEBI_38070) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "anti-arrhythmia agent" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) SubClassOf [mesangial cell development](http://purl.obolibrary.org/obo/GO_0072143) +- [anti-arrhythmia drug](http://purl.obolibrary.org/obo/CHEBI_38070) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A drug used for the treatment or prevention of cardiac arrhythmias. Anti-arrhythmia drugs may affect the polarisation-repolarisation phase of the action potential, its excitability or refractoriness, or impulse conduction or membrane responsiveness within cardiac fibres." -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) SubClassOf [results in development of](http://purl.obolibrary.org/obo/RO_0002296) some [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) +- [anti-arrhythmia drug](http://purl.obolibrary.org/obo/CHEBI_38070) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [glomerular mesangial cell development](http://purl.obolibrary.org/obo/GO_0072144) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) +- Class: [anti-arrhythmia drug](http://purl.obolibrary.org/obo/CHEBI_38070) +- [anti-arrhythmia drug](http://purl.obolibrary.org/obo/CHEBI_38070) SubClassOf [cardiovascular drug](http://purl.obolibrary.org/obo/CHEBI_35554) -### glomerular mesangial cell differentiation `http://purl.obolibrary.org/obo/GO_0072008` +### basal cell of urothelium `http://purl.obolibrary.org/obo/CL_1000486` #### Removed -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0072008" - -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the glomerular mesangial cells of the kidney as it progresses from its formation to the mature state." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mtg_kidney_jan10" +- [basal cell of urothelium](http://purl.obolibrary.org/obo/CL_1000486) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A basal cell that is part of the urothelium." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [basal cell of urothelium](http://purl.obolibrary.org/obo/CL_1000486) SubClassOf [endoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004119) -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "mah" +#### Added +- [basal cell of urothelium](http://purl.obolibrary.org/obo/CL_1000486) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "It has been noted in at least some mammalian species that the urothelial basal cell type is distinguished by expression of high levels of cytokeratin-5 (CK5), p63 and the signalling molecule Sonic hedgehog (Shh). Similar to intermediate cells, the urothelial basal cell type expresses CK17 but is negative for uroplakins (UPK) and CK20. Urothelial basal cells have also been noted to be smaller in diameter than urothelial intermediate cells." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1038/s41385-022-00565-0" -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2010-01-25T01:59:33Z" +- [basal cell of urothelium](http://purl.obolibrary.org/obo/CL_1000486) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "urothelial basal cell" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1111/cpr.13170" -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) [label](http://www.w3.org/2000/01/rdf-schema#label) "glomerular mesangial cell differentiation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1007/978-3-030-14366-4_8" -- Class: [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) +- [basal cell of urothelium](http://purl.obolibrary.org/obo/CL_1000486) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A basal cell that is part of the urothelium. Compared to other urothelial cell types, a basal cell of the urothelium is positioned along the basement membrane, is the most undifferentiated and serves a progenitor role." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) EquivalentTo [cell differentiation](http://purl.obolibrary.org/obo/GO_0030154) and ([results in acquisition of features of](http://purl.obolibrary.org/obo/RO_0002315) some [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742)) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1038/s41385-022-00565-0" -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [glomerular mesangium development](http://purl.obolibrary.org/obo/GO_0072109) +- [basal cell of urothelium](http://purl.obolibrary.org/obo/CL_1000486) SubClassOf [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) SubClassOf [epithelial cell differentiation involved in kidney development](http://purl.obolibrary.org/obo/GO_0035850) -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) SubClassOf [mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072007) +### bicarbonate transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015106` -- [glomerular mesangial cell differentiation](http://purl.obolibrary.org/obo/GO_0072008) SubClassOf [results in acquisition of features of](http://purl.obolibrary.org/obo/RO_0002315) some [glomerular mesangial cell](http://purl.obolibrary.org/obo/CL_1000742) +#### Added +- [bicarbonate transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015106) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [hydrogencarbonate](http://purl.obolibrary.org/obo/CHEBI_17544) +### bladder urothelial cell `http://purl.obolibrary.org/obo/CL_1001428` +#### Removed +- [bladder urothelial cell](http://purl.obolibrary.org/obo/CL_1001428) SubClassOf [bladder cell](http://purl.obolibrary.org/obo/CL_1001319) + - [is_inferred](http://www.geneontology.org/formats/oboInOwl#is_inferred) "true" -### glomerular visceral epithelium `http://purl.obolibrary.org/obo/UBERON_0005751` +- [bladder urothelial cell](http://purl.obolibrary.org/obo/CL_1001428) SubClassOf [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) + - [is_inferred](http://www.geneontology.org/formats/oboInOwl#is_inferred) "true" #### Added -- [glomerular visceral epithelium](http://purl.obolibrary.org/obo/UBERON_0005751) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [bladder urothelial cell](http://purl.obolibrary.org/obo/CL_1001428) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C32210" -- [glomerular visceral epithelium](http://purl.obolibrary.org/obo/UBERON_0005751) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [bladder urothelial cell](http://purl.obolibrary.org/obo/CL_1001428) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "bladder transitional cell" +- [bladder urothelial cell](http://purl.obolibrary.org/obo/CL_1001428) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A urothelial cell that is part of the urothelium of the urinary bladder." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1038/s41385-022-00565-0" -### glutamatergic neuron `http://purl.obolibrary.org/obo/CL_0000679` +- [bladder urothelial cell](http://purl.obolibrary.org/obo/CL_1001428) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "transitional epithelial cell of urinary bladder" -#### Added -- [glutamatergic neuron](http://purl.obolibrary.org/obo/CL_0000679) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [bladder urothelial cell](http://purl.obolibrary.org/obo/CL_1001428) SubClassOf [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) -- [glutamatergic neuron](http://purl.obolibrary.org/obo/CL_0000679) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [bladder urothelial cell](http://purl.obolibrary.org/obo/CL_1001428) SubClassOf [bladder cell](http://purl.obolibrary.org/obo/CL_1001319) -### gluteal muscle `http://purl.obolibrary.org/obo/UBERON_0002000` +### blood cell `http://purl.obolibrary.org/obo/CL_0000081` #### Added -- [gluteal muscle](http://purl.obolibrary.org/obo/UBERON_0002000) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [gluteal muscle](http://purl.obolibrary.org/obo/UBERON_0002000) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [blood cell](http://purl.obolibrary.org/obo/CL_0000081) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### gluteus maximus `http://purl.obolibrary.org/obo/UBERON_0001370` +### bone cell `http://purl.obolibrary.org/obo/CL_0001035` #### Added -- [gluteus maximus](http://purl.obolibrary.org/obo/UBERON_0001370) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [gluteus maximus](http://purl.obolibrary.org/obo/UBERON_0001370) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [bone cell](http://purl.obolibrary.org/obo/CL_0001035) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### gluteus minimus `http://purl.obolibrary.org/obo/UBERON_0008521` +### bronchial artery `http://purl.obolibrary.org/obo/UBERON_0002040` #### Added -- [gluteus minimus](http://purl.obolibrary.org/obo/UBERON_0008521) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [bronchial artery](http://purl.obolibrary.org/obo/UBERON_0002040) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [respiratory system arterial endothelium](http://purl.obolibrary.org/obo/UBERON_0004848) -- [gluteus minimus](http://purl.obolibrary.org/obo/UBERON_0008521) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [bronchial artery](http://purl.obolibrary.org/obo/UBERON_0002040) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [respiratory system arterial smooth muscle](http://purl.obolibrary.org/obo/UBERON_0012416) -### goblet cell of epithelium of lobar bronchus `http://purl.obolibrary.org/obo/CL_4033009` +### calcium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015085` #### Added -- [goblet cell of epithelium of lobar bronchus](http://purl.obolibrary.org/obo/CL_4033009) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [calcium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015085) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [calcium(2+)](http://purl.obolibrary.org/obo/CHEBI_29108) -- [goblet cell of epithelium of lobar bronchus](http://purl.obolibrary.org/obo/CL_4033009) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### gracilis `http://purl.obolibrary.org/obo/UBERON_0000950` +### carbohydrate phosphate `http://purl.obolibrary.org/obo/CHEBI_26816` #### Added -- [gracilis](http://purl.obolibrary.org/obo/UBERON_0000950) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [carbohydrate phosphate](http://purl.obolibrary.org/obo/CHEBI_26816) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [gracilis](http://purl.obolibrary.org/obo/UBERON_0000950) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [carbohydrate phosphate](http://purl.obolibrary.org/obo/CHEBI_26816) [label](http://www.w3.org/2000/01/rdf-schema#label) "carbohydrate phosphate" +- [carbohydrate phosphate](http://purl.obolibrary.org/obo/CHEBI_26816) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### head of femur `http://purl.obolibrary.org/obo/UBERON_0006767` +- [carbohydrate phosphate](http://purl.obolibrary.org/obo/CHEBI_26816) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "carbohydrate phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -#### Added -- [head of femur](http://purl.obolibrary.org/obo/UBERON_0006767) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [carbohydrate phosphate](http://purl.obolibrary.org/obo/CHEBI_26816) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26816" -- [head of femur](http://purl.obolibrary.org/obo/UBERON_0006767) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [carbohydrate phosphate](http://purl.obolibrary.org/obo/CHEBI_26816) +- [carbohydrate phosphate](http://purl.obolibrary.org/obo/CHEBI_26816) SubClassOf [organic phosphate](http://purl.obolibrary.org/obo/CHEBI_25703) -### hematopoietic cell `http://purl.obolibrary.org/obo/CL_0000988` -#### Removed -- [hematopoietic cell](http://purl.obolibrary.org/obo/CL_0000988) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [carbohydrate phosphate](http://purl.obolibrary.org/obo/CHEBI_26816) SubClassOf [carbohydrate derivative](http://purl.obolibrary.org/obo/CHEBI_63299) +- [carbohydrate phosphate](http://purl.obolibrary.org/obo/CHEBI_26816) SubClassOf [phosphoric ester](http://purl.obolibrary.org/obo/CHEBI_37734) -### hematopoietic lineage restricted progenitor cell `http://purl.obolibrary.org/obo/CL_0002031` +### cardiac muscle cell `http://purl.obolibrary.org/obo/CL_0000746` #### Added -- [hematopoietic lineage restricted progenitor cell](http://purl.obolibrary.org/obo/CL_0002031) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [cardiac muscle cell](http://purl.obolibrary.org/obo/CL_0000746) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### hematopoietic multipotent progenitor cell `http://purl.obolibrary.org/obo/CL_0000837` +### cell activation `http://purl.obolibrary.org/obo/GO_0001775` #### Added -- [hematopoietic multipotent progenitor cell](http://purl.obolibrary.org/obo/CL_0000837) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [cell activation](http://purl.obolibrary.org/obo/GO_0001775) SubClassOf [only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Metazoa](http://purl.obolibrary.org/obo/NCBITaxon_33208) +- [cell activation](http://purl.obolibrary.org/obo/GO_0001775) SubClassOf [in taxon](http://purl.obolibrary.org/obo/RO_0002162) only [Metazoa](http://purl.obolibrary.org/obo/NCBITaxon_33208) -### hematopoietic oligopotent progenitor cell `http://purl.obolibrary.org/obo/CL_0002032` - -#### Added -- [hematopoietic oligopotent progenitor cell](http://purl.obolibrary.org/obo/CL_0002032) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) - -### hematopoietic stem cell `http://purl.obolibrary.org/obo/CL_0000037` +### cell migration `http://purl.obolibrary.org/obo/GO_0016477` #### Added -- [hematopoietic stem cell](http://purl.obolibrary.org/obo/CL_0000037) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [cell migration](http://purl.obolibrary.org/obo/GO_0016477) [never in taxon](http://purl.obolibrary.org/obo/RO_0002161) [Ascomycota](http://purl.obolibrary.org/obo/NCBITaxon_4890) +- [cell migration](http://purl.obolibrary.org/obo/GO_0016477) DisjointWith [in taxon](http://purl.obolibrary.org/obo/RO_0002162) some [Ascomycota](http://purl.obolibrary.org/obo/NCBITaxon_4890) -### hemocyte (sensu Arthropoda) `http://purl.obolibrary.org/obo/CL_0000387` -#### Removed -- [hemocyte (sensu Arthropoda)](http://purl.obolibrary.org/obo/CL_0000387) SubClassOf [capable of](http://purl.obolibrary.org/obo/RO_0002215) some [encapsulation of foreign target](http://purl.obolibrary.org/obo/GO_0035010) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18025161" +- [cell migration](http://purl.obolibrary.org/obo/GO_0016477) SubClassOf [in taxon](http://purl.obolibrary.org/obo/RO_0002162) some (not ([Ascomycota](http://purl.obolibrary.org/obo/NCBITaxon_4890))) -- [hemocyte (sensu Arthropoda)](http://purl.obolibrary.org/obo/CL_0000387) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [cell migration](http://purl.obolibrary.org/obo/GO_0016477) SubClassOf not ([in taxon](http://purl.obolibrary.org/obo/RO_0002162) some [Ascomycota](http://purl.obolibrary.org/obo/NCBITaxon_4890)) -- [hemocyte (sensu Arthropoda)](http://purl.obolibrary.org/obo/CL_0000387) SubClassOf [phagocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000519) -#### Added -- [hemocyte (sensu Arthropoda)](http://purl.obolibrary.org/obo/CL_0000387) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A blood cell of the circulatory system of arthropods." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1016/B978-012369493-5.50008-0" +### cell of skeletal muscle `http://purl.obolibrary.org/obo/CL_0000188` -- [hemocyte (sensu Arthropoda)](http://purl.obolibrary.org/obo/CL_0000387) SubClassOf [blood cell (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000390) +#### Added +- [cell of skeletal muscle](http://purl.obolibrary.org/obo/CL_0000188) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### hemocyte development `http://purl.obolibrary.org/obo/GO_0007516` +### cellular component morphogenesis `http://purl.obolibrary.org/obo/GO_0032989` #### Removed -- [hemocyte development](http://purl.obolibrary.org/obo/GO_0007516) SubClassOf [cell development](http://purl.obolibrary.org/obo/GO_0048468) +- [cellular component morphogenesis](http://purl.obolibrary.org/obo/GO_0032989) SubClassOf [cellular component organization](http://purl.obolibrary.org/obo/GO_0016043) + +- [cellular component morphogenesis](http://purl.obolibrary.org/obo/GO_0032989) SubClassOf [cellular developmental process](http://purl.obolibrary.org/obo/GO_0048869) #### Added -- [hemocyte development](http://purl.obolibrary.org/obo/GO_0007516) SubClassOf [hemopoiesis](http://purl.obolibrary.org/obo/GO_0030097) +- [cellular component morphogenesis](http://purl.obolibrary.org/obo/GO_0032989) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/25496"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### hepatic stellate cell `http://purl.obolibrary.org/obo/CL_0000632` +### cellular response to ATP `http://purl.obolibrary.org/obo/GO_0071318` #### Added -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "fat-storing cell" - -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CALOHA:TS-0452" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "mah" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "lipocyte" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2009-12-10T05:09:47Z" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "perisinusoidal cell" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "cellular response to adenosine 5'-triphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [label](http://www.w3.org/2000/01/rdf-schema#label) "hepatic stellate cell" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BTO:0002741" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "vitamin A-storing cells" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12808230" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) [label](http://www.w3.org/2000/01/rdf-schema#label) "cellular response to ATP" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell that is found in the perisinusoidal space of the liver that is capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components that can contribute to liver fibrosis. This activated state has a myofibroblast-like phenotype, though it's not clear in the literature if this is terminally differentiated. This cell type comprises approximately 8-15% of total cells in the liver." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dsd" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0071318" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12808230" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "cellular response to adenosine triphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://en.wikipedia.org/wiki/Hepatic_stellate_cell" +- Class: [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MESH:D055166" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) EquivalentTo [cellular response to chemical stimulus](http://purl.obolibrary.org/obo/GO_0070887) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616)) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9302568" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) SubClassOf [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:17239632" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18222966" +- [cellular response to ATP](http://purl.obolibrary.org/obo/GO_0071318) SubClassOf [cellular response to chemical stimulus](http://purl.obolibrary.org/obo/GO_0070887) -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Ito cell" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Hepatic stellate cells are CD271-positive, desmin-positive, DDR-2-positive, GFAP-positive, synamin-positive, synaptophysin-positive, vimentin-positive, They are capable of producing angiotensin II, fibronectin, laminin, MMP-1, MMP-2, MMP-3, MMP-9, MMP-11, TGF-beta1, TIMP-1, TIMP-2, type I collagen, type III collagen, type IV collagen, and type VI collagen." +### central nervous system myelin formation `http://purl.obolibrary.org/obo/GO_0032289` -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "hepatic perisinusoidal cell" +#### Added +- [central nervous system myelin formation](http://purl.obolibrary.org/obo/GO_0032289) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "central nervous system myelin sheath formation" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:67763" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### club cell `http://purl.obolibrary.org/obo/CL_0000158` +#### Removed +- [club cell](http://purl.obolibrary.org/obo/CL_0000158) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A non-mucous, epithelial secretory cell that is part of the tracheobronchial tree. A club cell has short microvilli but no cilia. A club cell is able to multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium and it also protects the tracheobronchial epithelium." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:https://doi.org/10.1378/chest.12-2762" -- Class: [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.1183/09031936.00146609" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) EquivalentTo [connective tissue cell](http://purl.obolibrary.org/obo/CL_0002320) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [liver](http://purl.obolibrary.org/obo/UBERON_0002107)) and ([has plasma membrane part](http://purl.obolibrary.org/obo/RO_0002104) some [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939)) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28128362" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) SubClassOf [has plasma membrane part](http://purl.obolibrary.org/obo/RO_0002104) some [glial fibrillary acidic protein](http://purl.obolibrary.org/obo/PR_000007939) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29874100" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) SubClassOf [protein-containing material entity](http://purl.obolibrary.org/obo/PR_000050567) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:7905712" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) SubClassOf [extracellular matrix secreting cell](http://purl.obolibrary.org/obo/CL_0000327) +#### Added +- [club cell](http://purl.obolibrary.org/obo/CL_0000158) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A non-mucous, epithelial secretory cell that is part of the tracheobronchial tree. A club cell has short microvilli but no cilia. A club cell is able to multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium and it also protects the tracheobronchial epithelium." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) SubClassOf [fibroblast](http://purl.obolibrary.org/obo/CL_0000057) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.1378/chest.12-2762" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) SubClassOf [connective tissue cell](http://purl.obolibrary.org/obo/CL_0002320) - - [is_inferred](http://www.geneontology.org/formats/oboInOwl#is_inferred) "true" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.1183/09031936.00146609" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) SubClassOf [endoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004119) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28128362" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [liver](http://purl.obolibrary.org/obo/UBERON_0002107) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29874100" -- [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) SubClassOf [material anatomical entity](http://purl.obolibrary.org/obo/CARO_0000006) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:7905712" -### hepatic stellate cell activation `http://purl.obolibrary.org/obo/GO_0035733` +### cysteine-type peptidase activity `http://purl.obolibrary.org/obo/GO_0008234` +#### Removed +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-9757951" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "CASP8 cleaves N4BP1 at D424, D490" -#### Added -- [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A change in the morphology or behavior of a hepatic stellate cell resulting from exposure to a cytokine, chemokine, hormone, cellular ligand or soluble factor." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "CL:0000632" +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "thiol protease activity" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:bf" +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "cysteine protease activity" -- [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-03-11T10:04:12Z" +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [label](http://www.w3.org/2000/01/rdf-schema#label) "cysteine-type peptidase activity" -- [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-5660752" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "USP9X deubiquitinates Ub-SNCA" -- [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) [label](http://www.w3.org/2000/01/rdf-schema#label) "hepatic stellate cell activation" +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-2022381" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Cathepsin Z (Cathepsin X) hydrolyzes Angiotensin-(1-10) to Angiotensin-(1-8)" -- [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0035733" +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -- [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- Class: [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.ebi.ac.uk/merops/about/glossary.shtml#CATTYPE" -- [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) EquivalentTo [cell activation](http://purl.obolibrary.org/obo/GO_0001775) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632)) +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0008234" -- [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0004220" -- [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) SubClassOf [fibroblast activation](http://purl.obolibrary.org/obo/GO_0072537) +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-2467809" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "ESPL1 (Separase) cleaves centromeric cohesin" +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-2467775" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Autocleavage of ESPL1 (Separase)" -### hepatic stellate cell differentiation `http://purl.obolibrary.org/obo/GO_0061521` +- Class: [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) -#### Added -- [hepatic stellate cell differentiation](http://purl.obolibrary.org/obo/GO_0061521) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0061521" +- [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) SubClassOf [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) -- [hepatic stellate cell differentiation](http://purl.obolibrary.org/obo/GO_0061521) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [hepatic stellate cell differentiation](http://purl.obolibrary.org/obo/GO_0061521) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2013-04-18T13:36:08Z" -- [hepatic stellate cell differentiation](http://purl.obolibrary.org/obo/GO_0061521) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a hepatic stellate cell." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" +### dendritic cell `http://purl.obolibrary.org/obo/CL_0000451` - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9407545" +#### Added +- [dendritic cell](http://purl.obolibrary.org/obo/CL_0000451) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [hepatic stellate cell differentiation](http://purl.obolibrary.org/obo/GO_0061521) [label](http://www.w3.org/2000/01/rdf-schema#label) "hepatic stellate cell differentiation" -- [hepatic stellate cell differentiation](http://purl.obolibrary.org/obo/GO_0061521) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "dph" +### dihydroxytetrahydrofuran `http://purl.obolibrary.org/obo/CHEBI_47019` -- Class: [hepatic stellate cell differentiation](http://purl.obolibrary.org/obo/GO_0061521) +#### Added +- [dihydroxytetrahydrofuran](http://purl.obolibrary.org/obo/CHEBI_47019) [label](http://www.w3.org/2000/01/rdf-schema#label) "dihydroxytetrahydrofuran" -- [hepatic stellate cell differentiation](http://purl.obolibrary.org/obo/GO_0061521) EquivalentTo [cell differentiation](http://purl.obolibrary.org/obo/GO_0030154) and ([results in acquisition of features of](http://purl.obolibrary.org/obo/RO_0002315) some [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632)) +- [dihydroxytetrahydrofuran](http://purl.obolibrary.org/obo/CHEBI_47019) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:47019" -- [hepatic stellate cell differentiation](http://purl.obolibrary.org/obo/GO_0061521) SubClassOf [results in acquisition of features of](http://purl.obolibrary.org/obo/RO_0002315) some [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) +- [dihydroxytetrahydrofuran](http://purl.obolibrary.org/obo/CHEBI_47019) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [hepatic stellate cell differentiation](http://purl.obolibrary.org/obo/GO_0061521) SubClassOf [cell differentiation](http://purl.obolibrary.org/obo/GO_0030154) +- [dihydroxytetrahydrofuran](http://purl.obolibrary.org/obo/CHEBI_47019) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [dihydroxytetrahydrofuran](http://purl.obolibrary.org/obo/CHEBI_47019) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "dihydroxytetrahydrofurans" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### hepatic stellate cell migration `http://purl.obolibrary.org/obo/GO_0061868` +- Class: [dihydroxytetrahydrofuran](http://purl.obolibrary.org/obo/CHEBI_47019) -#### Added -- [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0061868" +- [dihydroxytetrahydrofuran](http://purl.obolibrary.org/obo/CHEBI_47019) SubClassOf [tetrahydrofuranol](http://purl.obolibrary.org/obo/CHEBI_47017) -- [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2017-05-01T13:01:40Z" -- [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) [label](http://www.w3.org/2000/01/rdf-schema#label) "hepatic stellate cell migration" +### dorsal iris `http://purl.obolibrary.org/obo/UBERON_8480063` -- [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The orderly movement of a hepatic stellate cell from one site to another." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24204762" +#### Added +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) -- [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) [curator notes](http://purl.obolibrary.org/obo/IAO_0000232) "In urodeles, lens regeneration proceeds through two steps. The first step involves the entire circumference of the iris pigmented epithelium. The second step is confined to the pigmented epithelial cells located along the dorsal rim of the iris and involves dorsal-specific activation of the Wnt signaling pathway." -- [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "dph" +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -- Class: [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480063" -- [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) EquivalentTo [cell migration](http://purl.obolibrary.org/obo/GO_0016477) and ([results in movement of](http://purl.obolibrary.org/obo/RO_0002565) some [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632)) +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The dorsal part of the iris. In urodeles (newts and salamanders) the dorsal iris is involved in lens regeneration in a process named Wolffian lens regeneration." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:17030116" -- [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) SubClassOf [results in movement of](http://purl.obolibrary.org/obo/RO_0002565) some [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29579253" -- [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) SubClassOf [fibroblast migration](http://purl.obolibrary.org/obo/GO_0010761) +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "dorsal rim of the iris" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29579253" +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) [date](http://purl.org/dc/terms/date) "2023-06-06T08:06:04Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) -### hepatic stellate cell proliferation `http://purl.obolibrary.org/obo/GO_1990922` +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) [label](http://www.w3.org/2000/01/rdf-schema#label) "dorsal iris" -#### Added -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) [label](http://www.w3.org/2000/01/rdf-schema#label) "hepatic stellate cell proliferation" +- Class: [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1990922" +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) SubClassOf [organ part](http://purl.obolibrary.org/obo/UBERON_0000064) -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The multiplication or reproduction of hepatic stellate cells, resulting in the expansion of a hepatic stellate cell population. Hepatic stellate cells are found in the perisinusoidal space of the liver, and are capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components. This cell type comprises approximately 8-15% of total cells in the liver." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:15358192" +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) SubClassOf [ectoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004121) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:sl" +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) SubClassOf [overlaps](http://purl.obolibrary.org/obo/RO_0002131) some [iris epithelium](http://purl.obolibrary.org/obo/UBERON_0002506) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18466260" +- [dorsal iris](http://purl.obolibrary.org/obo/UBERON_8480063) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [iris](http://purl.obolibrary.org/obo/UBERON_0001769) -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Ito cell proliferation" -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "perisinusoidal cell proliferation" +### elemental hydrogen `http://purl.obolibrary.org/obo/CHEBI_33260` -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2016-01-13T23:12:57Z" +#### Added +- [elemental hydrogen](http://purl.obolibrary.org/obo/CHEBI_33260) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "hepatic perisinusoidal cell proliferation" +- [elemental hydrogen](http://purl.obolibrary.org/obo/CHEBI_33260) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "sl" +- [elemental hydrogen](http://purl.obolibrary.org/obo/CHEBI_33260) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:33260" -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [elemental hydrogen](http://purl.obolibrary.org/obo/CHEBI_33260) [label](http://www.w3.org/2000/01/rdf-schema#label) "elemental hydrogen" -- Class: [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) +- Class: [elemental hydrogen](http://purl.obolibrary.org/obo/CHEBI_33260) -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) EquivalentTo [cell population proliferation](http://purl.obolibrary.org/obo/GO_0008283) and ([acts on population of](http://purl.obolibrary.org/obo/RO_0012003) some [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632)) +- [elemental hydrogen](http://purl.obolibrary.org/obo/CHEBI_33260) SubClassOf [inorganic molecular entity](http://purl.obolibrary.org/obo/CHEBI_24835) -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) SubClassOf [acts on population of](http://purl.obolibrary.org/obo/RO_0012003) some [hepatic stellate cell](http://purl.obolibrary.org/obo/CL_0000632) +- [elemental hydrogen](http://purl.obolibrary.org/obo/CHEBI_33260) SubClassOf [hydrogen molecular entity](http://purl.obolibrary.org/obo/CHEBI_33608) -- [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) SubClassOf [fibroblast proliferation](http://purl.obolibrary.org/obo/GO_0048144) +- [elemental hydrogen](http://purl.obolibrary.org/obo/CHEBI_33260) SubClassOf [elemental molecular entity](http://purl.obolibrary.org/obo/CHEBI_33259) -### hippocampal astrocyte `http://purl.obolibrary.org/obo/CL_0002604` +### endocrine cell `http://purl.obolibrary.org/obo/CL_0000163` #### Added -- [hippocampal astrocyte](http://purl.obolibrary.org/obo/CL_0002604) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [endocrine cell](http://purl.obolibrary.org/obo/CL_0000163) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [hippocampal astrocyte](http://purl.obolibrary.org/obo/CL_0002604) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### hippocampal interneuron differentiation `http://purl.obolibrary.org/obo/GO_0097410` +### endometrial ciliated epithelial cell `http://purl.obolibrary.org/obo/CL_4030040` #### Removed -- [hippocampal interneuron differentiation](http://purl.obolibrary.org/obo/GO_0097410) SubClassOf [forebrain neuron differentiation](http://purl.obolibrary.org/obo/GO_0021879) - +- [endometrial ciliated epithelial cell](http://purl.obolibrary.org/obo/CL_4030040) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ciliated cell of the endometrial epithelium. The cilia of this cell type help move mucus from glandular tissue of the endometrium." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.nature.com/articles/s41591-020-1040-z" - -### humerus `http://purl.obolibrary.org/obo/UBERON_0000976` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.proteinatlas.org/humanproteome/single+cell+type/Glandular+epithelial+cells#endometrialciliatedcells" #### Added -- [humerus](http://purl.obolibrary.org/obo/UBERON_0000976) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [endometrial ciliated epithelial cell](http://purl.obolibrary.org/obo/CL_4030040) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ciliated cell of the endometrial epithelium. The cilia of this cell type help move mucus from glandular tissue of the endometrium." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1038/s41591-020-1040-z" -- [humerus](http://purl.obolibrary.org/obo/UBERON_0000976) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.proteinatlas.org/humanproteome/single+cell+type/Glandular+epithelial+cells#endometrialciliatedcells" -### hyoglossus muscle `http://purl.obolibrary.org/obo/UBERON_0001572` +### entorbitale `http://purl.obolibrary.org/obo/UBERON_8500004` #### Added -- [hyoglossus muscle](http://purl.obolibrary.org/obo/UBERON_0001572) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [entorbitale](http://purl.obolibrary.org/obo/UBERON_8500004) [label](http://www.w3.org/2000/01/rdf-schema#label) "entorbitale" -- [hyoglossus muscle](http://purl.obolibrary.org/obo/UBERON_0001572) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [entorbitale](http://purl.obolibrary.org/obo/UBERON_8500004) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An anatomical point on the naso-medial indentation of the orbit that corresponds with the inner angle of the eye in the living animal." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:9780873659505" +- [entorbitale](http://purl.obolibrary.org/obo/UBERON_8500004) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -### hyoid bone `http://purl.obolibrary.org/obo/UBERON_0001685` +- [entorbitale](http://purl.obolibrary.org/obo/UBERON_8500004) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8500004" -#### Added -- [hyoid bone](http://purl.obolibrary.org/obo/UBERON_0001685) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [entorbitale](http://purl.obolibrary.org/obo/UBERON_8500004) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-8415-4848](https://orcid.org/0000-0001-8415-4848) -- [hyoid bone](http://purl.obolibrary.org/obo/UBERON_0001685) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [entorbitale](http://purl.obolibrary.org/obo/UBERON_8500004) +- [entorbitale](http://purl.obolibrary.org/obo/UBERON_8500004) SubClassOf [anatomical point](http://purl.obolibrary.org/obo/UBERON_0006983) -### hypothalamus cell `http://purl.obolibrary.org/obo/CL_2000030` -#### Removed -- [hypothalamus cell](http://purl.obolibrary.org/obo/CL_2000030) SubClassOf [native cell](http://purl.obolibrary.org/obo/CL_0000003) +- [entorbitale](http://purl.obolibrary.org/obo/UBERON_8500004) SubClassOf [anatomical entity](http://purl.obolibrary.org/obo/CARO_0000000) -#### Added -- [hypothalamus cell](http://purl.obolibrary.org/obo/CL_2000030) SubClassOf [neural cell](http://purl.obolibrary.org/obo/CL_0002319) +- [entorbitale](http://purl.obolibrary.org/obo/UBERON_8500004) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [orbit of skull](http://purl.obolibrary.org/obo/UBERON_0001697) -### ileocecal lymph node `http://purl.obolibrary.org/obo/UBERON_8480054` +### epithelial cell `http://purl.obolibrary.org/obo/CL_0000066` #### Added -- [ileocecal lymph node](http://purl.obolibrary.org/obo/UBERON_8480054) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ileocaecal lymph node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:15493265" +- [epithelial cell](http://purl.obolibrary.org/obo/CL_0000066) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [ileocecal lymph node](http://purl.obolibrary.org/obo/UBERON_8480054) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) -- [ileocecal lymph node](http://purl.obolibrary.org/obo/UBERON_8480054) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Mesenteric lymph node embedded in the ileocecal fold at both sides of the concavity of the cecum. It drains the terminal ileum." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18251298" +### establishment of cell polarity involved in ameboidal cell migration `http://purl.obolibrary.org/obo/GO_0003365` - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:15493265" - -- [ileocecal lymph node](http://purl.obolibrary.org/obo/UBERON_8480054) [curator notes](http://purl.obolibrary.org/obo/IAO_0000232) "According to the Segen's Medical Dictionary, Farlex, Inc., 2011 the ileocaecal lymph node is an obsolete term that formerly dignified those ileocolic lymph nodes lying in the ileocaecal angle (https://medical-dictionary.thefreedictionary.com/ileocaecal+lymph+nodes). However, this term is still used in domesticated animals as pigs (e.g. PMID:31031713), cats (e.g. PMID:35964104), sheeps (e.g. PMID:15493265) and calves (e.g. PMID:23000583). In few cases this term has been used in humans (PMID:32420296, PMID:35277366, PMID:31456616). Consider if appropriate as a subclass of ileocolic lymph node (UBERON:0016378)." +#### Added +- [establishment of cell polarity involved in ameboidal cell migration](http://purl.obolibrary.org/obo/GO_0003365) [never in taxon](http://purl.obolibrary.org/obo/RO_0002161) [Fungi](http://purl.obolibrary.org/obo/NCBITaxon_4751) -- [ileocecal lymph node](http://purl.obolibrary.org/obo/UBERON_8480054) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480054" +- [establishment of cell polarity involved in ameboidal cell migration](http://purl.obolibrary.org/obo/GO_0003365) DisjointWith [in taxon](http://purl.obolibrary.org/obo/RO_0002162) some [Fungi](http://purl.obolibrary.org/obo/NCBITaxon_4751) -- [ileocecal lymph node](http://purl.obolibrary.org/obo/UBERON_8480054) [date](http://purl.org/dc/terms/date) "2023-05-11T12:09:21Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [establishment of cell polarity involved in ameboidal cell migration](http://purl.obolibrary.org/obo/GO_0003365) SubClassOf not ([in taxon](http://purl.obolibrary.org/obo/RO_0002162) some [Fungi](http://purl.obolibrary.org/obo/NCBITaxon_4751)) -- [ileocecal lymph node](http://purl.obolibrary.org/obo/UBERON_8480054) [label](http://www.w3.org/2000/01/rdf-schema#label) "ileocecal lymph node" +- [establishment of cell polarity involved in ameboidal cell migration](http://purl.obolibrary.org/obo/GO_0003365) SubClassOf [in taxon](http://purl.obolibrary.org/obo/RO_0002162) some (not ([Fungi](http://purl.obolibrary.org/obo/NCBITaxon_4751))) -- [ileocecal lymph node](http://purl.obolibrary.org/obo/UBERON_8480054) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -- Class: [ileocecal lymph node](http://purl.obolibrary.org/obo/UBERON_8480054) +### euryon `http://purl.obolibrary.org/obo/UBERON_8500001` -- [ileocecal lymph node](http://purl.obolibrary.org/obo/UBERON_8480054) SubClassOf [mesenteric lymph node](http://purl.obolibrary.org/obo/UBERON_0002509) +#### Added +- [euryon](http://purl.obolibrary.org/obo/UBERON_8500001) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An anatomical point on the most lateral point of the neurocranium." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:9780873659505" +- [euryon](http://purl.obolibrary.org/obo/UBERON_8500001) [label](http://www.w3.org/2000/01/rdf-schema#label) "euryon" -### iliacus muscle `http://purl.obolibrary.org/obo/UBERON_0001369` +- [euryon](http://purl.obolibrary.org/obo/UBERON_8500001) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -#### Added -- [iliacus muscle](http://purl.obolibrary.org/obo/UBERON_0001369) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [euryon](http://purl.obolibrary.org/obo/UBERON_8500001) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-8415-4848](https://orcid.org/0000-0001-8415-4848) -- [iliacus muscle](http://purl.obolibrary.org/obo/UBERON_0001369) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [euryon](http://purl.obolibrary.org/obo/UBERON_8500001) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8500001" +- Class: [euryon](http://purl.obolibrary.org/obo/UBERON_8500001) -### iliococcygeus muscle `http://purl.obolibrary.org/obo/UBERON_0011511` +- [euryon](http://purl.obolibrary.org/obo/UBERON_8500001) SubClassOf [anatomical entity](http://purl.obolibrary.org/obo/CARO_0000000) -#### Added -- [iliococcygeus muscle](http://purl.obolibrary.org/obo/UBERON_0011511) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [euryon](http://purl.obolibrary.org/obo/UBERON_8500001) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [neurocranium](http://purl.obolibrary.org/obo/UBERON_0001703) -- [iliococcygeus muscle](http://purl.obolibrary.org/obo/UBERON_0011511) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [euryon](http://purl.obolibrary.org/obo/UBERON_8500001) SubClassOf [anatomical point](http://purl.obolibrary.org/obo/UBERON_0006983) -### iliocostalis thoracis muscle `http://purl.obolibrary.org/obo/UBERON_0001400` +### exocrine cell `http://purl.obolibrary.org/obo/CL_0000152` #### Added -- [iliocostalis thoracis muscle](http://purl.obolibrary.org/obo/UBERON_0001400) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [exocrine cell](http://purl.obolibrary.org/obo/CL_0000152) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [iliocostalis thoracis muscle](http://purl.obolibrary.org/obo/UBERON_0001400) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### immature B cell `http://purl.obolibrary.org/obo/CL_0000816` +### extraembryonic cell `http://purl.obolibrary.org/obo/CL_0000349` #### Added -- [immature B cell](http://purl.obolibrary.org/obo/CL_0000816) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [extraembryonic cell](http://purl.obolibrary.org/obo/CL_0000349) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### immature T cell `http://purl.obolibrary.org/obo/CL_0002420` +### fat cell `http://purl.obolibrary.org/obo/CL_0000136` #### Added -- [immature T cell](http://purl.obolibrary.org/obo/CL_0002420) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [fat cell](http://purl.obolibrary.org/obo/CL_0000136) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### import into cell `http://purl.obolibrary.org/obo/GO_0098657` -#### Removed -- [import into cell](http://purl.obolibrary.org/obo/GO_0098657) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has target start location](http://purl.obolibrary.org/obo/RO_0002338) some [extracellular region](http://purl.obolibrary.org/obo/GO_0005576)) and ([has target end location](http://purl.obolibrary.org/obo/RO_0002339) some [intracellular anatomical structure](http://purl.obolibrary.org/obo/GO_0005622)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [chemical entity](http://purl.obolibrary.org/obo/CHEBI_24431)) - -- [import into cell](http://purl.obolibrary.org/obo/GO_0098657) SubClassOf [has target end location](http://purl.obolibrary.org/obo/RO_0002339) some [intracellular anatomical structure](http://purl.obolibrary.org/obo/GO_0005622) +### femoral head cartilage `http://purl.obolibrary.org/obo/UBERON_8480062` #### Added -- [import into cell](http://purl.obolibrary.org/obo/GO_0098657) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has target start location](http://purl.obolibrary.org/obo/RO_0002338) some [extracellular region](http://purl.obolibrary.org/obo/GO_0005576)) and ([has target end location](http://purl.obolibrary.org/obo/RO_0002339) some [cytoplasm](http://purl.obolibrary.org/obo/GO_0005737)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [chemical entity](http://purl.obolibrary.org/obo/CHEBI_24431)) +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -- [import into cell](http://purl.obolibrary.org/obo/GO_0098657) SubClassOf [has target end location](http://purl.obolibrary.org/obo/RO_0002339) some [cytoplasm](http://purl.obolibrary.org/obo/GO_0005737) +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480062" +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) [label](http://www.w3.org/2000/01/rdf-schema#label) "femoral head cartilage" -### in taxon `http://purl.obolibrary.org/obo/RO_0002162` +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) -#### Added -- [RO_0002206](http://purl.obolibrary.org/obo/RO_0002206) o [in taxon](http://purl.obolibrary.org/obo/RO_0002162) SubPropertyOf: [in taxon](http://purl.obolibrary.org/obo/RO_0002162) +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) [date](http://purl.org/dc/terms/date) "2023-05-30T06:34:18Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A hyaline articular cartilage that covers the head of femur. Provides cushioning, softness and low friction for the hip joint." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29262200" -### incus bone `http://purl.obolibrary.org/obo/UBERON_0001688` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36292459" -#### Added -- [incus bone](http://purl.obolibrary.org/obo/UBERON_0001688) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) -- [incus bone](http://purl.obolibrary.org/obo/UBERON_0001688) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [head of femur](http://purl.obolibrary.org/obo/UBERON_0006767) +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) SubClassOf [upper leg connective tissue](http://purl.obolibrary.org/obo/UBERON_0004266) -### independent continuant `http://purl.obolibrary.org/obo/BFO_0000004` +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) SubClassOf [long bone cartilage element](http://purl.obolibrary.org/obo/UBERON_8480044) -#### Added -- [independent continuant](http://purl.obolibrary.org/obo/BFO_0000004) DisjointWith [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) SubClassOf [articular cartilage of joint](http://purl.obolibrary.org/obo/UBERON_0010996) + +- [femoral head cartilage](http://purl.obolibrary.org/obo/UBERON_8480062) SubClassOf [pelvic appendage cartilage tissue](http://purl.obolibrary.org/obo/UBERON_0007391) -### inferior angle of scapula `http://purl.obolibrary.org/obo/UBERON_0007175` +### fetal pre-type II pneumocyte `http://purl.obolibrary.org/obo/CL_4040003` #### Added -- [inferior angle of scapula](http://purl.obolibrary.org/obo/UBERON_0007175) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) [note](http://www.geneontology.org/formats/oboInOwl#note) "According to PMID:1316350 this cell type does not yet produce surfactant. According to PMID:9109447 and PMID:12114192 this cell type produces low levels of surfactant that can be increased by administration of very low-density lipoproteins. This cell type is of medical relevance, as a central feature of the fetal respiratory distress syndrome seems to be the presence in the lung of abundant pre-type II alveolar epithelial cells (PMID:1316350)." -- [inferior angle of scapula](http://purl.obolibrary.org/obo/UBERON_0007175) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "fetal pre-type 2 pneumocyte" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-0819-0473" +- [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) [label](http://www.w3.org/2000/01/rdf-schema#label) "fetal pre-type II pneumocyte" -### inferior gemellus muscle `http://purl.obolibrary.org/obo/UBERON_0019202` +- [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) [date](http://purl.org/dc/terms/date) "2023-06-02T09:19:31Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) -#### Added -- [inferior gemellus muscle](http://purl.obolibrary.org/obo/UBERON_0019202) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "fetal alveolar pre-type II epithelial cell" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9624168" -- [inferior gemellus muscle](http://purl.obolibrary.org/obo/UBERON_0019202) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "fetal pre-type II alveolar epithelial cell" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12114192" +- [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) -### inferior nasal concha `http://purl.obolibrary.org/obo/UBERON_0005922` +- [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Precursor of type II pneumocyte. These cells do not have lamellar bodies, which are a marker of type II pneumocyte maturity." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:1316350" -#### Added -- [inferior nasal concha](http://purl.obolibrary.org/obo/UBERON_0005922) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) -- [inferior nasal concha](http://purl.obolibrary.org/obo/UBERON_0005922) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) SubClassOf [pneumocyte](http://purl.obolibrary.org/obo/CL_0000322) -### inferior oblique extraocular muscle `http://purl.obolibrary.org/obo/UBERON_0006320` +### fibroblast `http://purl.obolibrary.org/obo/CL_0000057` #### Added -- [inferior oblique extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006320) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [fibroblast](http://purl.obolibrary.org/obo/CL_0000057) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [inferior oblique extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006320) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [fibroblast](http://purl.obolibrary.org/obo/CL_0000057) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C12482" -### inferior rectus extraocular muscle `http://purl.obolibrary.org/obo/UBERON_0006322` +### follicle stem cell (sensu Arthropoda) `http://purl.obolibrary.org/obo/CL_0000441` +#### Removed +- [follicle stem cell (sensu Arthropoda)](http://purl.obolibrary.org/obo/CL_0000441) [label](http://www.w3.org/2000/01/rdf-schema#label) "follicle stem cell" #### Added -- [inferior rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006322) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [follicle stem cell (sensu Arthropoda)](http://purl.obolibrary.org/obo/CL_0000441) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "somatic stem cell" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1016/j.devcel.2005.08.012" -- [inferior rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006322) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [follicle stem cell (sensu Arthropoda)](http://purl.obolibrary.org/obo/CL_0000441) [label](http://www.w3.org/2000/01/rdf-schema#label) "follicle stem cell (sensu Arthropoda)" +- [follicle stem cell (sensu Arthropoda)](http://purl.obolibrary.org/obo/CL_0000441) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A stem cell that gives rise to the follicle cells that surround the oocyte in female arthropods." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1242/dev.121.11.3797" -### infrahyoid muscle `http://purl.obolibrary.org/obo/UBERON_0008523` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1016/B978-012369493-5.50005-5" -#### Added -- [infrahyoid muscle](http://purl.obolibrary.org/obo/UBERON_0008523) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1038/s41467-020-19361-0" -- [infrahyoid muscle](http://purl.obolibrary.org/obo/UBERON_0008523) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [follicle stem cell (sensu Arthropoda)](http://purl.obolibrary.org/obo/CL_0000441) SubClassOf [only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Arthropoda](http://purl.obolibrary.org/obo/NCBITaxon_6656) + - [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/obophenotype/cell-ontology/issues/1943" -### infraspinatus muscle `http://purl.obolibrary.org/obo/UBERON_0001477` +### formate transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015499` #### Added -- [infraspinatus muscle](http://purl.obolibrary.org/obo/UBERON_0001477) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [infraspinatus muscle](http://purl.obolibrary.org/obo/UBERON_0001477) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [formate transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015499) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [formate](http://purl.obolibrary.org/obo/CHEBI_15740) -### innermost intercostal muscle `http://purl.obolibrary.org/obo/UBERON_0008617` +### general_cell_types_upper_slim `http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim` #### Added -- [innermost intercostal muscle](http://purl.obolibrary.org/obo/UBERON_0008617) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- AnnotationProperty: [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [innermost intercostal muscle](http://purl.obolibrary.org/obo/UBERON_0008617) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) SubPropertyOf: [subset_property](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -### innominate bone `http://purl.obolibrary.org/obo/UBERON_0001272` +### germ cell `http://purl.obolibrary.org/obo/CL_0000586` #### Added -- [innominate bone](http://purl.obolibrary.org/obo/UBERON_0001272) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [germ cell](http://purl.obolibrary.org/obo/CL_0000586) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C12597" -- [innominate bone](http://purl.obolibrary.org/obo/UBERON_0001272) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### insect histoblast nest `http://purl.obolibrary.org/obo/UBERON_6001790` -#### Removed -- [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) SubClassOf [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) +### germ cell development `http://purl.obolibrary.org/obo/GO_0007281` #### Added -- [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) SubClassOf [insect embryonic/larval imaginal precursor](http://purl.obolibrary.org/obo/UBERON_6001760) +- [germ cell development](http://purl.obolibrary.org/obo/GO_0007281) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "gametogenesis" -### insect tergite `http://purl.obolibrary.org/obo/UBERON_6004476` -#### Removed -- [insect tergite](http://purl.obolibrary.org/obo/UBERON_6004476) SubClassOf [develops from](http://purl.obolibrary.org/obo/RO_0002202) some [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) - -- [insect tergite](http://purl.obolibrary.org/obo/UBERON_6004476) SubClassOf [develops from](http://purl.obolibrary.org/obo/RO_0002202) some [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) - -- [insect tergite](http://purl.obolibrary.org/obo/UBERON_6004476) SubClassOf [ectoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004121) +### germ line cell `http://purl.obolibrary.org/obo/CL_0000039` #### Added -- [insect tergite](http://purl.obolibrary.org/obo/UBERON_6004476) SubClassOf [develops from](http://purl.obolibrary.org/obo/RO_0002202) some [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) - -- [insect tergite](http://purl.obolibrary.org/obo/UBERON_6004476) SubClassOf [anatomical entity](http://purl.obolibrary.org/obo/CARO_0000000) +- [germ line cell](http://purl.obolibrary.org/obo/CL_0000039) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### intermedium `http://purl.obolibrary.org/obo/UBERON_0001428` +### glial cell `http://purl.obolibrary.org/obo/CL_0000125` #### Added -- [intermedium](http://purl.obolibrary.org/obo/UBERON_0001428) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glial cell](http://purl.obolibrary.org/obo/CL_0000125) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [intermedium](http://purl.obolibrary.org/obo/UBERON_0001428) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### internal intercostal muscle `http://purl.obolibrary.org/obo/UBERON_0002403` +### glycosyl compound `http://purl.obolibrary.org/obo/CHEBI_63161` #### Added -- [internal intercostal muscle](http://purl.obolibrary.org/obo/UBERON_0002403) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [internal intercostal muscle](http://purl.obolibrary.org/obo/UBERON_0002403) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:63161" +- [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) [label](http://www.w3.org/2000/01/rdf-schema#label) "glycosyl compound" -### intrinsic muscle of tongue `http://purl.obolibrary.org/obo/UBERON_0001576` +- [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A carbohydrate derivative arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to an oxygen, carbon, nitrogen or sulfur atom of a separate entity." -#### Added -- [intrinsic muscle of tongue](http://purl.obolibrary.org/obo/UBERON_0001576) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [intrinsic muscle of tongue](http://purl.obolibrary.org/obo/UBERON_0001576) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "glycosyl compounds" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### iron import into cell `http://purl.obolibrary.org/obo/GO_0033212` -#### Removed -- [iron import into cell](http://purl.obolibrary.org/obo/GO_0033212) SubClassOf [import into cell](http://purl.obolibrary.org/obo/GO_0098657) +- Class: [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) +- [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) SubClassOf [carbohydrate derivative](http://purl.obolibrary.org/obo/CHEBI_63299) -### ischiocavernosus muscle `http://purl.obolibrary.org/obo/UBERON_0001339` +### glycosyl compound biosynthetic process `http://purl.obolibrary.org/obo/GO_1901659` #### Added -- [ischiocavernosus muscle](http://purl.obolibrary.org/obo/UBERON_0001339) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [ischiocavernosus muscle](http://purl.obolibrary.org/obo/UBERON_0001339) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1901659" +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "glycosyl compound anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### jugal bone `http://purl.obolibrary.org/obo/UBERON_0001683` +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "glycosyl compound formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [jugal bone](http://purl.obolibrary.org/obo/UBERON_0001683) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "glycosyl compound synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [jugal bone](http://purl.obolibrary.org/obo/UBERON_0001683) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "pr" +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### juxtaglomerular arteriole `http://purl.obolibrary.org/obo/UBERON_0034884` +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of glycosyl compound." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [juxtaglomerular arteriole](http://purl.obolibrary.org/obo/UBERON_0034884) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:pr" -- [juxtaglomerular arteriole](http://purl.obolibrary.org/obo/UBERON_0034884) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-11-20T14:24:19Z" +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) [label](http://www.w3.org/2000/01/rdf-schema#label) "glycosyl compound biosynthetic process" -### keratocyte `http://purl.obolibrary.org/obo/CL_0002363` +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "glycosyl compound biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [keratocyte](http://purl.obolibrary.org/obo/CL_0002363) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- Class: [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161)) -### lacrimal bone `http://purl.obolibrary.org/obo/UBERON_0001680` +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) SubClassOf [carbohydrate derivative biosynthetic process](http://purl.obolibrary.org/obo/GO_1901137) -#### Added -- [lacrimal bone](http://purl.obolibrary.org/obo/UBERON_0001680) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) -- [lacrimal bone](http://purl.obolibrary.org/obo/UBERON_0001680) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) SubClassOf [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) -### lamina of spiral limbus `http://purl.obolibrary.org/obo/UBERON_0002276` +### glycosyl compound catabolic process `http://purl.obolibrary.org/obo/GO_1901658` #### Added -- [lamina of spiral limbus](http://purl.obolibrary.org/obo/UBERON_0002276) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "pr" + +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of glycosyl compound." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [lamina of spiral limbus](http://purl.obolibrary.org/obo/UBERON_0002276) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:pr" +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1901658" -### lateral border of scapula `http://purl.obolibrary.org/obo/UBERON_0007173` +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) [label](http://www.w3.org/2000/01/rdf-schema#label) "glycosyl compound catabolic process" -#### Added -- [lateral border of scapula](http://purl.obolibrary.org/obo/UBERON_0007173) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [lateral border of scapula](http://purl.obolibrary.org/obo/UBERON_0007173) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "glycosyl compound degradation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "glycosyl compound catabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### lateral condyle of tibia `http://purl.obolibrary.org/obo/UBERON_0009991` +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-11-20T14:24:11Z" -#### Added -- [lateral condyle of tibia](http://purl.obolibrary.org/obo/UBERON_0009991) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "glycosyl compound breakdown" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [lateral condyle of tibia](http://purl.obolibrary.org/obo/UBERON_0009991) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161)) -### lateral crico-arytenoid `http://purl.obolibrary.org/obo/UBERON_0008573` +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) -#### Added -- [lateral crico-arytenoid](http://purl.obolibrary.org/obo/UBERON_0008573) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) SubClassOf [carbohydrate derivative catabolic process](http://purl.obolibrary.org/obo/GO_1901136) -- [lateral crico-arytenoid](http://purl.obolibrary.org/obo/UBERON_0008573) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) SubClassOf [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) -### lateral epicondyle of femur `http://purl.obolibrary.org/obo/UBERON_0009986` +### glycosyl compound metabolic process `http://purl.obolibrary.org/obo/GO_1901657` #### Added -- [lateral epicondyle of femur](http://purl.obolibrary.org/obo/UBERON_0009986) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "pr" -- [lateral epicondyle of femur](http://purl.obolibrary.org/obo/UBERON_0009986) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "glycosyl compound metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving glycosyl compound." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### lateral line nerve glial cell `http://purl.obolibrary.org/obo/CL_1000050` -#### Removed -- [lateral line nerve glial cell](http://purl.obolibrary.org/obo/CL_1000050) SubClassOf [Schwann cell](http://purl.obolibrary.org/obo/CL_0002573) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:pr" -#### Added -- [lateral line nerve glial cell](http://purl.obolibrary.org/obo/CL_1000050) SubClassOf [glial cell](http://purl.obolibrary.org/obo/CL_0000125) +- [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) [label](http://www.w3.org/2000/01/rdf-schema#label) "glycosyl compound metabolic process" +- [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### lateral line nerve glial cell migration `http://purl.obolibrary.org/obo/GO_0048896` -#### Removed -- [lateral line nerve glial cell migration](http://purl.obolibrary.org/obo/GO_0048896) SubClassOf [Schwann cell migration](http://purl.obolibrary.org/obo/GO_0036135) +- [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-11-20T14:24:07Z" -#### Added -- [lateral line nerve glial cell migration](http://purl.obolibrary.org/obo/GO_0048896) SubClassOf [glial cell migration](http://purl.obolibrary.org/obo/GO_0008347) +- [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1901657" +- Class: [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) -### lateral malleolus of fibula `http://purl.obolibrary.org/obo/UBERON_0012291` +- [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161)) -#### Added -- [lateral malleolus of fibula](http://purl.obolibrary.org/obo/UBERON_0012291) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_63161) -- [lateral malleolus of fibula](http://purl.obolibrary.org/obo/UBERON_0012291) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) SubClassOf [carbohydrate derivative metabolic process](http://purl.obolibrary.org/obo/GO_1901135) -### lateral pterygoid muscle `http://purl.obolibrary.org/obo/UBERON_0006719` +### granule cell `http://purl.obolibrary.org/obo/CL_0000120` #### Added -- [lateral pterygoid muscle](http://purl.obolibrary.org/obo/UBERON_0006719) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [granule cell](http://purl.obolibrary.org/obo/CL_0000120) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A neuron of the vertebrate central nervous system that is small in size. This general class includes small neurons in the granular layer of the cerebellar cortex, cerebral cortex neurons that are not pyramidal cells and small neurons without axons found in the olfactory bulb." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) [cell](https://medical-dictionary.thefreedictionary.com/granule+cell) -- [lateral pterygoid muscle](http://purl.obolibrary.org/obo/UBERON_0006719) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### lateral rectus extra-ocular muscle `http://purl.obolibrary.org/obo/UBERON_0001603` +### heterocyclic organic fundamental parent `http://purl.obolibrary.org/obo/CHEBI_35552` #### Added -- [lateral rectus extra-ocular muscle](http://purl.obolibrary.org/obo/UBERON_0001603) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "heterocyclic organic fundamental parents" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [lateral rectus extra-ocular muscle](http://purl.obolibrary.org/obo/UBERON_0001603) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "heterocyclic fundamental parent" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35552" -### latissimus dorsi muscle `http://purl.obolibrary.org/obo/UBERON_0001112` +- [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) [label](http://www.w3.org/2000/01/rdf-schema#label) "heterocyclic organic fundamental parent" -#### Added -- [latissimus dorsi muscle](http://purl.obolibrary.org/obo/UBERON_0001112) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "heterocyclic parent hydrides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [latissimus dorsi muscle](http://purl.obolibrary.org/obo/UBERON_0001112) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### left supraclavicular lymph node `http://purl.obolibrary.org/obo/UBERON_8480056` +- [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "organic heterocyclic fundamental parents" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -#### Added -- [left supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480056) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [left supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480056) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Supraclavicular lymph node located on the left side of a entire appendicular skeleton. The left supraclavicular lymph node drains the kidney, cervix, testis, and pancreas into the thoracic duct." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:31335020" +- Class: [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) -- [left supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480056) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) SubClassOf [organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_33245) -- [left supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480056) [label](http://www.w3.org/2000/01/rdf-schema#label) "left supraclavicular lymph node" -- [left supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480056) [date](http://purl.org/dc/terms/date) "2023-05-11T12:20:06Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +### heteromonocyclic compound `http://purl.obolibrary.org/obo/CHEBI_33670` -- [left supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480056) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480056" +#### Added +- [heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33670) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- Class: [left supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480056) +- [heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33670) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "heteromonocyclic compound" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [left supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480056) SubClassOf [supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_0035279) + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33670) [label](http://www.w3.org/2000/01/rdf-schema#label) "heteromonocyclic compound" -### leg bone `http://purl.obolibrary.org/obo/UBERON_0005893` +- [heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33670) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [leg bone](http://purl.obolibrary.org/obo/UBERON_0005893) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33670) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:33670" -- [leg bone](http://purl.obolibrary.org/obo/UBERON_0005893) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33670) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "heteromonocyclic compounds" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -### lesser tubercle of humerus `http://purl.obolibrary.org/obo/UBERON_0011188` +- Class: [heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33670) -#### Added -- [lesser tubercle of humerus](http://purl.obolibrary.org/obo/UBERON_0011188) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33670) SubClassOf [heterocyclic compound](http://purl.obolibrary.org/obo/CHEBI_5686) -- [lesser tubercle of humerus](http://purl.obolibrary.org/obo/UBERON_0011188) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33670) SubClassOf [monocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33661) -### leukocyte `http://purl.obolibrary.org/obo/CL_0000738` +### hydron `http://purl.obolibrary.org/obo/CHEBI_15378` #### Added -- [leukocyte](http://purl.obolibrary.org/obo/CL_0000738) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [leukocyte](http://purl.obolibrary.org/obo/CL_0000738) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The general name for the hydrogen nucleus, to be used without regard to the hydrogen nuclear mass (either for hydrogen in its natural abundance or where it is not desired to distinguish between the isotopes)." +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13357" -### levator anguli oris `http://purl.obolibrary.org/obo/UBERON_0008595` +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "[H+]" -#### Added -- [levator anguli oris](http://purl.obolibrary.org/obo/UBERON_0008595) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [levator anguli oris](http://purl.obolibrary.org/obo/UBERON_0008595) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/p+1" +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [charge](http://purl.obolibrary.org/obo/chebi/charge) "+1" -### levator scapulae muscle `http://purl.obolibrary.org/obo/UBERON_0005461` +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:10744" -#### Added -- [levator scapulae muscle](http://purl.obolibrary.org/obo/UBERON_0005461) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:15378" -- [levator scapulae muscle](http://purl.obolibrary.org/obo/UBERON_0005461) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "GPRLSGONYQIRFK-UHFFFAOYSA-N" +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "1.008" -### lipid import into cell `http://purl.obolibrary.org/obo/GO_0140354` -#### Removed -- [lipid import into cell](http://purl.obolibrary.org/obo/GO_0140354) SubClassOf [import into cell](http://purl.obolibrary.org/obo/GO_0098657) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [formula](http://purl.obolibrary.org/obo/chebi/formula) "H" +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Hydron" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [mass](http://purl.obolibrary.org/obo/chebi/mass) "1.00794" -### lobar bronchus connective tissue `http://purl.obolibrary.org/obo/UBERON_0003591` +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "hydron" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -#### Added -- [lobar bronchus connective tissue](http://purl.obolibrary.org/obo/UBERON_0003591) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -- [lobar bronchus connective tissue](http://purl.obolibrary.org/obo/UBERON_0003591) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [label](http://www.w3.org/2000/01/rdf-schema#label) "hydron" +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00080" -### lobar bronchus vasculature `http://purl.obolibrary.org/obo/UBERON_0004889` -#### Removed -- [lobar bronchus vasculature](http://purl.obolibrary.org/obo/UBERON_0004889) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "H(+)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -- [lobar bronchus vasculature](http://purl.obolibrary.org/obo/UBERON_0004889) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "H+" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:5584" -### lobe of lung `http://purl.obolibrary.org/obo/UBERON_0000101` -#### Removed -- [lobe of lung](http://purl.obolibrary.org/obo/UBERON_0000101) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "hydrogen(1+)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [lobe of lung](http://purl.obolibrary.org/obo/UBERON_0000101) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- Class: [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) SubClassOf [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) -### longissimus cervicis muscle `http://purl.obolibrary.org/obo/UBERON_0001402` +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) SubClassOf [monoatomic monocation](http://purl.obolibrary.org/obo/CHEBI_25414) -#### Added -- [longissimus cervicis muscle](http://purl.obolibrary.org/obo/UBERON_0001402) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) SubClassOf [monovalent inorganic cation](http://purl.obolibrary.org/obo/CHEBI_60242) -- [longissimus cervicis muscle](http://purl.obolibrary.org/obo/UBERON_0001402) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) SubClassOf [atomic nucleus](http://purl.obolibrary.org/obo/CHEBI_33252) -### longissimus thoracis muscle `http://purl.obolibrary.org/obo/UBERON_0001401` +### imidazopyrimidine `http://purl.obolibrary.org/obo/CHEBI_35875` #### Added -- [longissimus thoracis muscle](http://purl.obolibrary.org/obo/UBERON_0001401) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [longissimus thoracis muscle](http://purl.obolibrary.org/obo/UBERON_0001401) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [imidazopyrimidine](http://purl.obolibrary.org/obo/CHEBI_35875) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "imidazopyrimidines" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [imidazopyrimidine](http://purl.obolibrary.org/obo/CHEBI_35875) [label](http://www.w3.org/2000/01/rdf-schema#label) "imidazopyrimidine" -### lumbar division of spinal cord central canal `http://purl.obolibrary.org/obo/UBERON_0014543` +- [imidazopyrimidine](http://purl.obolibrary.org/obo/CHEBI_35875) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [lumbar division of spinal cord central canal](http://purl.obolibrary.org/obo/UBERON_0014543) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [imidazopyrimidine](http://purl.obolibrary.org/obo/CHEBI_35875) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35875" -- [lumbar division of spinal cord central canal](http://purl.obolibrary.org/obo/UBERON_0014543) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [imidazopyrimidine](http://purl.obolibrary.org/obo/CHEBI_35875) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- Class: [imidazopyrimidine](http://purl.obolibrary.org/obo/CHEBI_35875) -### lumbar spinal cord `http://purl.obolibrary.org/obo/UBERON_0002792` +- [imidazopyrimidine](http://purl.obolibrary.org/obo/CHEBI_35875) SubClassOf [organic heterobicyclic compound](http://purl.obolibrary.org/obo/CHEBI_27171) -#### Added -- [lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0002792) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [imidazopyrimidine](http://purl.obolibrary.org/obo/CHEBI_35875) SubClassOf [heteroarene](http://purl.obolibrary.org/obo/CHEBI_33833) -- [lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0002792) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [imidazopyrimidine](http://purl.obolibrary.org/obo/CHEBI_35875) SubClassOf [organonitrogen heterocyclic compound](http://purl.obolibrary.org/obo/CHEBI_38101) -### lumbar spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0014638` +### in left side of `http://purl.obolibrary.org/obo/BSPO_0000120` #### Added -- [lumbar spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014638) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [lumbar spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014638) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [in left side of](http://purl.obolibrary.org/obo/BSPO_0000120) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C25229" -### lumbar spinal cord gray commissure `http://purl.obolibrary.org/obo/UBERON_0033483` +### in right side of `http://purl.obolibrary.org/obo/BSPO_0000121` #### Added -- [lumbar spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0033483) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [in right side of](http://purl.obolibrary.org/obo/BSPO_0000121) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C25228" -- [lumbar spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0033483) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### lumbar spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0029636` +### insect head capsule `http://purl.obolibrary.org/obo/UBERON_0003153` #### Added -- [lumbar spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0029636) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [lumbar spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0029636) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [insect head capsule](http://purl.obolibrary.org/obo/UBERON_0003153) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00004482" -### lumbar spinal cord lateral column `http://purl.obolibrary.org/obo/UBERON_0005850` +### interscapular region `http://purl.obolibrary.org/obo/UBERON_8480066` #### Added -- [lumbar spinal cord lateral column](http://purl.obolibrary.org/obo/UBERON_0005850) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [interscapular region](http://purl.obolibrary.org/obo/UBERON_8480066) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -- [lumbar spinal cord lateral column](http://purl.obolibrary.org/obo/UBERON_0005850) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [interscapular region](http://purl.obolibrary.org/obo/UBERON_8480066) [date](http://purl.org/dc/terms/date) "2023-06-23T09:06:25Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [interscapular region](http://purl.obolibrary.org/obo/UBERON_8480066) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The region in the upper part of the back between the shoulder blades." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-0819-0473" -### lumbar spinal cord lateral horn `http://purl.obolibrary.org/obo/UBERON_0031906` - -#### Added -- [lumbar spinal cord lateral horn](http://purl.obolibrary.org/obo/UBERON_0031906) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [interscapular region](http://purl.obolibrary.org/obo/UBERON_8480066) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) -- [lumbar spinal cord lateral horn](http://purl.obolibrary.org/obo/UBERON_0031906) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [interscapular region](http://purl.obolibrary.org/obo/UBERON_8480066) [label](http://www.w3.org/2000/01/rdf-schema#label) "interscapular region" +- [interscapular region](http://purl.obolibrary.org/obo/UBERON_8480066) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480066" -### lumbar spinal cord ventral commissure `http://purl.obolibrary.org/obo/UBERON_0007834` +- Class: [interscapular region](http://purl.obolibrary.org/obo/UBERON_8480066) -#### Added -- [lumbar spinal cord ventral commissure](http://purl.obolibrary.org/obo/UBERON_0007834) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [interscapular region](http://purl.obolibrary.org/obo/UBERON_8480066) SubClassOf [organism subdivision](http://purl.obolibrary.org/obo/UBERON_0000475) -- [lumbar spinal cord ventral commissure](http://purl.obolibrary.org/obo/UBERON_0007834) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [interscapular region](http://purl.obolibrary.org/obo/UBERON_8480066) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [dorsum](http://purl.obolibrary.org/obo/UBERON_0001137) -### lumbar spinal cord ventral horn `http://purl.obolibrary.org/obo/UBERON_0030276` +### intracellular nucleoside homeostasis `http://purl.obolibrary.org/obo/GO_0140980` #### Added -- [lumbar spinal cord ventral horn](http://purl.obolibrary.org/obo/UBERON_0030276) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [lumbar spinal cord ventral horn](http://purl.obolibrary.org/obo/UBERON_0030276) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - +- [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) [label](http://www.w3.org/2000/01/rdf-schema#label) "intracellular nucleoside homeostasis" -### lumbar spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0026386` +- [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [lumbar spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0026386) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-01-10T14:14:42Z" -- [lumbar spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0026386) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A homeostatic process involved in the maintenance of a steady state level of nucleosides within a cell." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:34880500" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23416111" -### lumbar subsegment of spinal cord `http://purl.obolibrary.org/obo/UBERON_0007716` +- [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "pg" -#### Added -- [lumbar subsegment of spinal cord](http://purl.obolibrary.org/obo/UBERON_0007716) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/24665"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [lumbar subsegment of spinal cord](http://purl.obolibrary.org/obo/UBERON_0007716) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0140980" +- Class: [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) -### lumbar vertebra `http://purl.obolibrary.org/obo/UBERON_0002414` +- [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) EquivalentTo [cellular homeostasis](http://purl.obolibrary.org/obo/GO_0019725) and ([regulates levels of](http://purl.obolibrary.org/obo/RO_0002332) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838)) -#### Added -- [lumbar vertebra](http://purl.obolibrary.org/obo/UBERON_0002414) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) SubClassOf [intracellular chemical homeostasis](http://purl.obolibrary.org/obo/GO_0055082) -- [lumbar vertebra](http://purl.obolibrary.org/obo/UBERON_0002414) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [intracellular nucleoside homeostasis](http://purl.obolibrary.org/obo/GO_0140980) SubClassOf [regulates levels of](http://purl.obolibrary.org/obo/RO_0002332) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) -### lumbar vertebra 1 `http://purl.obolibrary.org/obo/UBERON_0004617` +### intracellular nucleoside transport `http://purl.obolibrary.org/obo/GO_0015859` #### Added -- [lumbar vertebra 1](http://purl.obolibrary.org/obo/UBERON_0004617) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [lumbar vertebra 1](http://purl.obolibrary.org/obo/UBERON_0004617) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [intracellular nucleoside transport](http://purl.obolibrary.org/obo/GO_0015859) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [intracellular nucleoside transport](http://purl.obolibrary.org/obo/GO_0015859) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015859" -### lumbar vertebra 2 `http://purl.obolibrary.org/obo/UBERON_0004618` +- [intracellular nucleoside transport](http://purl.obolibrary.org/obo/GO_0015859) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), within a cell." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" -#### Added -- [lumbar vertebra 2](http://purl.obolibrary.org/obo/UBERON_0004618) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [intracellular nucleoside transport](http://purl.obolibrary.org/obo/GO_0015859) [label](http://www.w3.org/2000/01/rdf-schema#label) "intracellular nucleoside transport" -- [lumbar vertebra 2](http://purl.obolibrary.org/obo/UBERON_0004618) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [intracellular nucleoside transport](http://purl.obolibrary.org/obo/GO_0015859) +- [intracellular nucleoside transport](http://purl.obolibrary.org/obo/GO_0015859) EquivalentTo [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) and ([occurs in](http://purl.obolibrary.org/obo/BFO_0000066) some [intracellular anatomical structure](http://purl.obolibrary.org/obo/GO_0005622)) -### lumbar vertebra 3 `http://purl.obolibrary.org/obo/UBERON_0004619` +- [intracellular nucleoside transport](http://purl.obolibrary.org/obo/GO_0015859) SubClassOf [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) -#### Added -- [lumbar vertebra 3](http://purl.obolibrary.org/obo/UBERON_0004619) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [intracellular nucleoside transport](http://purl.obolibrary.org/obo/GO_0015859) SubClassOf [occurs in](http://purl.obolibrary.org/obo/BFO_0000066) some [intracellular anatomical structure](http://purl.obolibrary.org/obo/GO_0005622) -- [lumbar vertebra 3](http://purl.obolibrary.org/obo/UBERON_0004619) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [intracellular nucleoside transport](http://purl.obolibrary.org/obo/GO_0015859) SubClassOf [intracellular transport](http://purl.obolibrary.org/obo/GO_0046907) -### lumbar vertebra 4 `http://purl.obolibrary.org/obo/UBERON_0004620` +### intracellular nucleotide homeostasis `http://purl.obolibrary.org/obo/GO_0140979` #### Added -- [lumbar vertebra 4](http://purl.obolibrary.org/obo/UBERON_0004620) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/24665"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [lumbar vertebra 4](http://purl.obolibrary.org/obo/UBERON_0004620) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "pg" +- [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A homeostatic process involved in the maintenance of a steady state level of nucleotides within a cell." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:34880500" -### lumbar vertebra 5 `http://purl.obolibrary.org/obo/UBERON_0004621` - -#### Added -- [lumbar vertebra 5](http://purl.obolibrary.org/obo/UBERON_0004621) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23416111" -- [lumbar vertebra 5](http://purl.obolibrary.org/obo/UBERON_0004621) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-01-10T14:13:19Z" -### lung ciliated cell `http://purl.obolibrary.org/obo/CL_1000271` +- [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0140979" -#### Added -- [lung ciliated cell](http://purl.obolibrary.org/obo/CL_1000271) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) [label](http://www.w3.org/2000/01/rdf-schema#label) "intracellular nucleotide homeostasis" +- Class: [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) -### lung endothelial cell `http://purl.obolibrary.org/obo/CL_1001567` +- [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) EquivalentTo [cellular homeostasis](http://purl.obolibrary.org/obo/GO_0019725) and ([regulates levels of](http://purl.obolibrary.org/obo/RO_0002332) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976)) -#### Added -- [lung endothelial cell](http://purl.obolibrary.org/obo/CL_1001567) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) SubClassOf [regulates levels of](http://purl.obolibrary.org/obo/RO_0002332) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -- [lung endothelial cell](http://purl.obolibrary.org/obo/CL_1001567) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [intracellular nucleotide homeostasis](http://purl.obolibrary.org/obo/GO_0140979) SubClassOf [intracellular chemical homeostasis](http://purl.obolibrary.org/obo/GO_0055082) -### lung megakaryocyte `http://purl.obolibrary.org/obo/CL_4033018` +### jugal bone `http://purl.obolibrary.org/obo/UBERON_0001683` #### Added -- [lung megakaryocyte](http://purl.obolibrary.org/obo/CL_4033018) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [jugal bone](http://purl.obolibrary.org/obo/UBERON_0001683) SubClassOf [skeletal element of eye region](http://purl.obolibrary.org/obo/UBERON_0010321) -- [lung megakaryocyte](http://purl.obolibrary.org/obo/CL_4033018) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [jugal bone](http://purl.obolibrary.org/obo/UBERON_0001683) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [preorbital bone region](http://purl.obolibrary.org/obo/UBERON_7500102) -### lung perichondrial fibroblast `http://purl.obolibrary.org/obo/CL_4033026` +### kidney arcuate artery `http://purl.obolibrary.org/obo/UBERON_0001552` #### Removed -- [lung perichondrial fibroblast](http://purl.obolibrary.org/obo/CL_4033026) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A perichondrial fibroblast that is part of the lung" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36543915" +- [kidney arcuate artery](http://purl.obolibrary.org/obo/UBERON_0001552) [depicted by](http://xmlns.com/foaf/0.1/depicted_by) "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) #### Added -- [lung perichondrial fibroblast](http://purl.obolibrary.org/obo/CL_4033026) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A perichondrial fibroblast that is part of the lung." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36543915" +- [kidney arcuate artery](http://purl.obolibrary.org/obo/UBERON_0001552) [depicted by](http://xmlns.com/foaf/0.1/depicted_by) "https://upload.wikimedia.org/wikipedia/commons/8/87/2610_The_Kidney.jpg"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### lung secretory cell `http://purl.obolibrary.org/obo/CL_1000272` +### labial gland `http://purl.obolibrary.org/obo/UBERON_8480065` #### Added -- [lung secretory cell](http://purl.obolibrary.org/obo/CL_1000272) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "labial salivary gland" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:59792" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C32904" -### macrophage `http://purl.obolibrary.org/obo/CL_0000235` +- [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "labial minor salivary gland" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:34274288" -#### Added -- [macrophage](http://purl.obolibrary.org/obo/CL_0000235) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) [date](http://purl.org/dc/terms/date) "2023-06-19T12:41:05Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480065" -### main bronchus connective tissue `http://purl.obolibrary.org/obo/UBERON_0003590` +- [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -#### Added -- [main bronchus connective tissue](http://purl.obolibrary.org/obo/UBERON_0003590) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) [label](http://www.w3.org/2000/01/rdf-schema#label) "labial gland" -- [main bronchus connective tissue](http://purl.obolibrary.org/obo/UBERON_0003590) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The labial gland is one of the minor salivary glands, located mainly under the mucosal epithelium of the upper and lower lip and within the orbicularis oris muscle fibers. The labial gland secrete mucous and serous substances to maintain oral health. In particular, the inferior labial gland not only promotes moisturization in the oral cavity but also secretes substances with antibacterial effects." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:34422599" +- [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) -### male gamete `http://purl.obolibrary.org/obo/CL_0000408` +- [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "BTO:0001548" -#### Added -- [male gamete](http://purl.obolibrary.org/obo/CL_0000408) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- Class: [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) + +- [labial gland](http://purl.obolibrary.org/obo/UBERON_8480065) SubClassOf [minor salivary gland](http://purl.obolibrary.org/obo/UBERON_0001830) -### malleus bone `http://purl.obolibrary.org/obo/UBERON_0001689` +### lacrimal bone `http://purl.obolibrary.org/obo/UBERON_0001680` #### Added -- [malleus bone](http://purl.obolibrary.org/obo/UBERON_0001689) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [lacrimal bone](http://purl.obolibrary.org/obo/UBERON_0001680) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [preorbital bone region](http://purl.obolibrary.org/obo/UBERON_7500102) -- [malleus bone](http://purl.obolibrary.org/obo/UBERON_0001689) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [lacrimal bone](http://purl.obolibrary.org/obo/UBERON_0001680) SubClassOf [skeletal element of eye region](http://purl.obolibrary.org/obo/UBERON_0010321) -### mammalian cervical vertebra 3 `http://purl.obolibrary.org/obo/UBERON_0004612` +### left anterior segmental artery `http://purl.obolibrary.org/obo/UBERON_0039850` #### Added -- [mammalian cervical vertebra 3](http://purl.obolibrary.org/obo/UBERON_0004612) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [left anterior segmental artery](http://purl.obolibrary.org/obo/UBERON_0039850) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [left pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0001652) -- [mammalian cervical vertebra 3](http://purl.obolibrary.org/obo/UBERON_0004612) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [left anterior segmental artery](http://purl.obolibrary.org/obo/UBERON_0039850) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) -### mammalian cervical vertebra 4 `http://purl.obolibrary.org/obo/UBERON_0004613` +### leukocyte `http://purl.obolibrary.org/obo/CL_0000738` #### Added -- [mammalian cervical vertebra 4](http://purl.obolibrary.org/obo/UBERON_0004613) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [leukocyte](http://purl.obolibrary.org/obo/CL_0000738) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C12529" -- [mammalian cervical vertebra 4](http://purl.obolibrary.org/obo/UBERON_0004613) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### mammalian cervical vertebra 5 `http://purl.obolibrary.org/obo/UBERON_0004614` +### lobar bronchus `http://purl.obolibrary.org/obo/UBERON_0002183` #### Added -- [mammalian cervical vertebra 5](http://purl.obolibrary.org/obo/UBERON_0004614) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [lobar bronchus](http://purl.obolibrary.org/obo/UBERON_0002183) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [bronchus smooth muscle](http://purl.obolibrary.org/obo/UBERON_0004242) -- [mammalian cervical vertebra 5](http://purl.obolibrary.org/obo/UBERON_0004614) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [lobar bronchus](http://purl.obolibrary.org/obo/UBERON_0002183) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [cartilage of bronchus](http://purl.obolibrary.org/obo/UBERON_0001956) +- [lobar bronchus](http://purl.obolibrary.org/obo/UBERON_0002183) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [bronchus submucosal gland](http://purl.obolibrary.org/obo/UBERON_8410043) -### mammalian cervical vertebra 6 `http://purl.obolibrary.org/obo/UBERON_0004615` -#### Added -- [mammalian cervical vertebra 6](http://purl.obolibrary.org/obo/UBERON_0004615) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### macrophage `http://purl.obolibrary.org/obo/CL_0000235` -- [mammalian cervical vertebra 6](http://purl.obolibrary.org/obo/UBERON_0004615) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [macrophage](http://purl.obolibrary.org/obo/CL_0000235) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### mammalian cervical vertebra 7 `http://purl.obolibrary.org/obo/UBERON_0004616` +### mancude organic heterobicyclic parent `http://purl.obolibrary.org/obo/CHEBI_35570` #### Added -- [mammalian cervical vertebra 7](http://purl.obolibrary.org/obo/UBERON_0004616) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [mammalian cervical vertebra 7](http://purl.obolibrary.org/obo/UBERON_0004616) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mancude organic heterobicyclic parent](http://purl.obolibrary.org/obo/CHEBI_35570) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "mancude-ring organic heterobicyclic parents" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [mancude organic heterobicyclic parent](http://purl.obolibrary.org/obo/CHEBI_35570) [label](http://www.w3.org/2000/01/rdf-schema#label) "mancude organic heterobicyclic parent" -### mammillary body neuron `http://purl.obolibrary.org/obo/CL_4023074` +- [mancude organic heterobicyclic parent](http://purl.obolibrary.org/obo/CHEBI_35570) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35570" -#### Added -- [mammillary body neuron](http://purl.obolibrary.org/obo/CL_4023074) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mancude organic heterobicyclic parent](http://purl.obolibrary.org/obo/CHEBI_35570) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [mammillary body neuron](http://purl.obolibrary.org/obo/CL_4023074) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mancude organic heterobicyclic parent](http://purl.obolibrary.org/obo/CHEBI_35570) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "mancude organic heterobicyclic parents" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [mancude organic heterobicyclic parent](http://purl.obolibrary.org/obo/CHEBI_35570) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### mandible `http://purl.obolibrary.org/obo/UBERON_0001684` +- Class: [mancude organic heterobicyclic parent](http://purl.obolibrary.org/obo/CHEBI_35570) -#### Added -- [mandible](http://purl.obolibrary.org/obo/UBERON_0001684) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mancude organic heterobicyclic parent](http://purl.obolibrary.org/obo/CHEBI_35570) SubClassOf [mancude organic heterocyclic parent](http://purl.obolibrary.org/obo/CHEBI_35571) -- [mandible](http://purl.obolibrary.org/obo/UBERON_0001684) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mancude organic heterobicyclic parent](http://purl.obolibrary.org/obo/CHEBI_35570) SubClassOf [organic heterobicyclic compound](http://purl.obolibrary.org/obo/CHEBI_27171) -### manubrium of sternum `http://purl.obolibrary.org/obo/UBERON_0002205` +### mancude organic heterocyclic parent `http://purl.obolibrary.org/obo/CHEBI_35571` #### Added -- [manubrium of sternum](http://purl.obolibrary.org/obo/UBERON_0002205) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [manubrium of sternum](http://purl.obolibrary.org/obo/UBERON_0002205) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mancude organic heterocyclic parent](http://purl.obolibrary.org/obo/CHEBI_35571) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "mancude-ring organic heterocyclic parents" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [mancude organic heterocyclic parent](http://purl.obolibrary.org/obo/CHEBI_35571) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "mancude organic heterocyclic parents" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### manus bone `http://purl.obolibrary.org/obo/UBERON_0005897` +- [mancude organic heterocyclic parent](http://purl.obolibrary.org/obo/CHEBI_35571) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -#### Added -- [manus bone](http://purl.obolibrary.org/obo/UBERON_0005897) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mancude organic heterocyclic parent](http://purl.obolibrary.org/obo/CHEBI_35571) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35571" -- [manus bone](http://purl.obolibrary.org/obo/UBERON_0005897) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mancude organic heterocyclic parent](http://purl.obolibrary.org/obo/CHEBI_35571) [label](http://www.w3.org/2000/01/rdf-schema#label) "mancude organic heterocyclic parent" +- [mancude organic heterocyclic parent](http://purl.obolibrary.org/obo/CHEBI_35571) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### masseter muscle `http://purl.obolibrary.org/obo/UBERON_0001597` +- Class: [mancude organic heterocyclic parent](http://purl.obolibrary.org/obo/CHEBI_35571) -#### Added -- [masseter muscle](http://purl.obolibrary.org/obo/UBERON_0001597) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mancude organic heterocyclic parent](http://purl.obolibrary.org/obo/CHEBI_35571) SubClassOf [organic mancude parent](http://purl.obolibrary.org/obo/CHEBI_35573) -- [masseter muscle](http://purl.obolibrary.org/obo/UBERON_0001597) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mancude organic heterocyclic parent](http://purl.obolibrary.org/obo/CHEBI_35571) SubClassOf [heterocyclic organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_35552) -### masticatory muscle `http://purl.obolibrary.org/obo/UBERON_0003681` +### mancude ring `http://purl.obolibrary.org/obo/CHEBI_35568` #### Added -- [masticatory muscle](http://purl.obolibrary.org/obo/UBERON_0003681) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "mancude-ring systems" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [masticatory muscle](http://purl.obolibrary.org/obo/UBERON_0003681) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### maxilla `http://purl.obolibrary.org/obo/UBERON_0002397` +- [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "mancunide-ring systems" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -#### Added -- [maxilla](http://purl.obolibrary.org/obo/UBERON_0002397) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any molecular entity that consists of a ring having (formally) the maximum number of noncumulative double bonds." -- [maxilla](http://purl.obolibrary.org/obo/UBERON_0002397) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35568" +- [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### medial border of scapula `http://purl.obolibrary.org/obo/UBERON_0007174` +- [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "mancude rings" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -#### Added -- [medial border of scapula](http://purl.obolibrary.org/obo/UBERON_0007174) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) [label](http://www.w3.org/2000/01/rdf-schema#label) "mancude ring" -- [medial border of scapula](http://purl.obolibrary.org/obo/UBERON_0007174) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) +- [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) SubClassOf [molecular entity](http://purl.obolibrary.org/obo/CHEBI_23367) -### medial condyle of tibia `http://purl.obolibrary.org/obo/UBERON_0009990` -#### Added -- [medial condyle of tibia](http://purl.obolibrary.org/obo/UBERON_0009990) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### maxilla `http://purl.obolibrary.org/obo/UBERON_0002397` -- [medial condyle of tibia](http://purl.obolibrary.org/obo/UBERON_0009990) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [maxilla](http://purl.obolibrary.org/obo/UBERON_0002397) SubClassOf [overlaps](http://purl.obolibrary.org/obo/RO_0002131) some [preorbital bone region](http://purl.obolibrary.org/obo/UBERON_7500102) -### medial epicondyle of femur `http://purl.obolibrary.org/obo/UBERON_0009987` +### melanocyte `http://purl.obolibrary.org/obo/CL_0000148` #### Added -- [medial epicondyle of femur](http://purl.obolibrary.org/obo/UBERON_0009987) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [melanocyte](http://purl.obolibrary.org/obo/CL_0000148) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [medial epicondyle of femur](http://purl.obolibrary.org/obo/UBERON_0009987) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### medial ganglionic eminence derived interneuron `http://purl.obolibrary.org/obo/CL_4023063` +### monoatomic hydrogen `http://purl.obolibrary.org/obo/CHEBI_33251` #### Added -- [medial ganglionic eminence derived interneuron](http://purl.obolibrary.org/obo/CL_4023063) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "1.00783" + +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [formula](http://purl.obolibrary.org/obo/chebi/formula) "H" -- [medial ganglionic eminence derived interneuron](http://purl.obolibrary.org/obo/CL_4023063) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "atomic hydrogen" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [mass](http://purl.obolibrary.org/obo/chebi/mass) "1.00794" -### medial pterygoid muscle `http://purl.obolibrary.org/obo/UBERON_0006718` +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [inchikey](http://purl.obolibrary.org/obo/chebi/inchikey) "YZCKVEUIGOORGS-UHFFFAOYSA-N" -#### Added -- [medial pterygoid muscle](http://purl.obolibrary.org/obo/UBERON_0006718) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [medial pterygoid muscle](http://purl.obolibrary.org/obo/UBERON_0006718) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:33251" +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [label](http://www.w3.org/2000/01/rdf-schema#label) "monoatomic hydrogen" -### medial rectus extraocular muscle `http://purl.obolibrary.org/obo/UBERON_0001602` +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "[H]" -#### Added -- [medial rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0001602) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -- [medial rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0001602) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [inchi](http://purl.obolibrary.org/obo/chebi/inchi) "InChI=1S/H" +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### megakaryocyte `http://purl.obolibrary.org/obo/CL_0000556` +- Class: [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) -#### Added -- [megakaryocyte](http://purl.obolibrary.org/obo/CL_0000556) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) SubClassOf [monoatomic entity](http://purl.obolibrary.org/obo/CHEBI_33238) +- [monoatomic hydrogen](http://purl.obolibrary.org/obo/CHEBI_33251) SubClassOf [elemental hydrogen](http://purl.obolibrary.org/obo/CHEBI_33260) -### mentalis muscle `http://purl.obolibrary.org/obo/UBERON_0008596` + +### monocyclic compound `http://purl.obolibrary.org/obo/CHEBI_33661` #### Added -- [mentalis muscle](http://purl.obolibrary.org/obo/UBERON_0008596) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [monocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33661) [label](http://www.w3.org/2000/01/rdf-schema#label) "monocyclic compound" -- [mentalis muscle](http://purl.obolibrary.org/obo/UBERON_0008596) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [monocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33661) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [monocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33661) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### mesothelial cell of visceral pleura `http://purl.obolibrary.org/obo/CL_1000493` -#### Removed -- [mesothelial cell of visceral pleura](http://purl.obolibrary.org/obo/CL_1000493) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [monocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33661) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "monocyclic compounds" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [mesothelial cell of visceral pleura](http://purl.obolibrary.org/obo/CL_1000493) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [monocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33661) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:33661" +- Class: [monocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33661) +- [monocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33661) SubClassOf [cyclic compound](http://purl.obolibrary.org/obo/CHEBI_33595) -### metacarpal bone of digit 1 `http://purl.obolibrary.org/obo/UBERON_0003645` -#### Added -- [metacarpal bone of digit 1](http://purl.obolibrary.org/obo/UBERON_0003645) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### monocyte `http://purl.obolibrary.org/obo/CL_0000576` -- [metacarpal bone of digit 1](http://purl.obolibrary.org/obo/UBERON_0003645) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +#### Added +- [monocyte](http://purl.obolibrary.org/obo/CL_0000576) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### metacarpal bone of digit 2 `http://purl.obolibrary.org/obo/UBERON_0003646` +### mononucleotide `http://purl.obolibrary.org/obo/CHEBI_29075` #### Added -- [metacarpal bone of digit 2](http://purl.obolibrary.org/obo/UBERON_0003646) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "mononucleotides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [metacarpal bone of digit 2](http://purl.obolibrary.org/obo/UBERON_0003646) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:14616" +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "213.01641" -### metacarpal bone of digit 3 `http://purl.obolibrary.org/obo/UBERON_0003647` +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -#### Added -- [metacarpal bone of digit 3](http://purl.obolibrary.org/obo/UBERON_0003647) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [metacarpal bone of digit 3](http://purl.obolibrary.org/obo/UBERON_0003647) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:6983" +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:29075" -### metacarpal bone of digit 4 `http://purl.obolibrary.org/obo/UBERON_0003648` +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [label](http://www.w3.org/2000/01/rdf-schema#label) "mononucleotide" -#### Added -- [metacarpal bone of digit 4](http://purl.obolibrary.org/obo/UBERON_0003648) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [metacarpal bone of digit 4](http://purl.obolibrary.org/obo/UBERON_0003648) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C02171" +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [mass](http://purl.obolibrary.org/obo/chebi/mass) "213.103" -### metacarpal bone of digit 5 `http://purl.obolibrary.org/obo/UBERON_0003649` +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:25404" -#### Added -- [metacarpal bone of digit 5](http://purl.obolibrary.org/obo/UBERON_0003649) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Mononucleotide" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [metacarpal bone of digit 5](http://purl.obolibrary.org/obo/UBERON_0003649) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H10O7PR" +- Class: [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) -### metatarsal bone of digit 1 `http://purl.obolibrary.org/obo/UBERON_0003650` +- [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) SubClassOf [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -#### Added -- [metatarsal bone of digit 1](http://purl.obolibrary.org/obo/UBERON_0003650) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [metatarsal bone of digit 1](http://purl.obolibrary.org/obo/UBERON_0003650) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### monosaccharide derivative `http://purl.obolibrary.org/obo/CHEBI_63367` +#### Added +- [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### metatarsal bone of digit 2 `http://purl.obolibrary.org/obo/UBERON_0003651` +- [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:63367" -#### Added -- [metatarsal bone of digit 2](http://purl.obolibrary.org/obo/UBERON_0003651) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) [label](http://www.w3.org/2000/01/rdf-schema#label) "monosaccharide derivative" -- [metatarsal bone of digit 2](http://purl.obolibrary.org/obo/UBERON_0003651) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A carbohydrate derivative that is formally obtained from a monosaccharide." +- [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "monosaccharide derivatives" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### metatarsal bone of digit 3 `http://purl.obolibrary.org/obo/UBERON_0003652` +- [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -#### Added -- [metatarsal bone of digit 3](http://purl.obolibrary.org/obo/UBERON_0003652) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) -- [metatarsal bone of digit 3](http://purl.obolibrary.org/obo/UBERON_0003652) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) SubClassOf [has_functional_parent](http://purl.obolibrary.org/obo/chebi#has_functional_parent) some [monosaccharide](http://purl.obolibrary.org/obo/CHEBI_35381) +- [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) SubClassOf [carbohydrate derivative](http://purl.obolibrary.org/obo/CHEBI_63299) -### metatarsal bone of digit 4 `http://purl.obolibrary.org/obo/UBERON_0003653` -#### Added -- [metatarsal bone of digit 4](http://purl.obolibrary.org/obo/UBERON_0003653) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### myelin assembly `http://purl.obolibrary.org/obo/GO_0032288` -- [metatarsal bone of digit 4](http://purl.obolibrary.org/obo/UBERON_0003653) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [myelin assembly](http://purl.obolibrary.org/obo/GO_0032288) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "myelin sheath assembly" -### metatarsal bone of digit 5 `http://purl.obolibrary.org/obo/UBERON_0003654` +### negative regulation of ATP biosynthetic process `http://purl.obolibrary.org/obo/GO_2001170` #### Added -- [metatarsal bone of digit 5](http://purl.obolibrary.org/obo/UBERON_0003654) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [metatarsal bone of digit 5](http://purl.obolibrary.org/obo/UBERON_0003654) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of ATP formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "kmv" -### microvascular endothelial cell `http://purl.obolibrary.org/obo/CL_2000008` -#### Removed -- [microvascular endothelial cell](http://purl.obolibrary.org/obo/CL_2000008) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-10-26T03:18:13Z" -- [microvascular endothelial cell](http://purl.obolibrary.org/obo/CL_2000008) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of ATP biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of ATP anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "negative regulation of ATP regeneration" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" -### midbrain-derived inhibitory neuron `http://purl.obolibrary.org/obo/CL_4023079` +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of ATP biosynthetic process" -#### Added -- [midbrain-derived inhibitory neuron](http://purl.obolibrary.org/obo/CL_4023079) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents or reduces the frequency, rate or extent of ATP biosynthetic process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" -- [midbrain-derived inhibitory neuron](http://purl.obolibrary.org/obo/CL_4023079) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of ATP synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### middle phalanx of manual digit 2 `http://purl.obolibrary.org/obo/UBERON_0004320` +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:2001170" -#### Added -- [middle phalanx of manual digit 2](http://purl.obolibrary.org/obo/UBERON_0004320) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) -- [middle phalanx of manual digit 2](http://purl.obolibrary.org/obo/UBERON_0004320) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754)) +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) SubClassOf [negative regulation of biosynthetic process](http://purl.obolibrary.org/obo/GO_0009890) -### middle phalanx of manual digit 3 `http://purl.obolibrary.org/obo/UBERON_0004321` +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) SubClassOf [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) -#### Added -- [middle phalanx of manual digit 3](http://purl.obolibrary.org/obo/UBERON_0004321) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) SubClassOf [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) -- [middle phalanx of manual digit 3](http://purl.obolibrary.org/obo/UBERON_0004321) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001170) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) -### middle phalanx of manual digit 4 `http://purl.obolibrary.org/obo/UBERON_0004322` +### negative regulation of ATP metabolic process `http://purl.obolibrary.org/obo/GO_1903579` #### Added -- [middle phalanx of manual digit 4](http://purl.obolibrary.org/obo/UBERON_0004322) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1903579" -- [middle phalanx of manual digit 4](http://purl.obolibrary.org/obo/UBERON_0004322) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of ATP metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### middle phalanx of manual digit 5 `http://purl.obolibrary.org/obo/UBERON_0004323` +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "sl" -#### Added -- [middle phalanx of manual digit 5](http://purl.obolibrary.org/obo/UBERON_0004323) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [middle phalanx of manual digit 5](http://purl.obolibrary.org/obo/UBERON_0004323) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2014-10-30T19:04:33Z" +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of ATP metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### middle phalanx of pedal digit 2 `http://purl.obolibrary.org/obo/UBERON_0004324` +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [middle phalanx of pedal digit 2](http://purl.obolibrary.org/obo/UBERON_0004324) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents or reduces the frequency, rate or extent of ATP metabolic process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20695849" -- [middle phalanx of pedal digit 2](http://purl.obolibrary.org/obo/UBERON_0004324) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000058" -### middle phalanx of pedal digit 3 `http://purl.obolibrary.org/obo/UBERON_0004325` +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of ATP metabolic process" -#### Added -- [middle phalanx of pedal digit 3](http://purl.obolibrary.org/obo/UBERON_0004325) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of ATP metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [middle phalanx of pedal digit 3](http://purl.obolibrary.org/obo/UBERON_0004325) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of ATP metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### middle phalanx of pedal digit 4 `http://purl.obolibrary.org/obo/UBERON_0004326` +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [middle phalanx of pedal digit 4](http://purl.obolibrary.org/obo/UBERON_0004326) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [middle phalanx of pedal digit 4](http://purl.obolibrary.org/obo/UBERON_0004326) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034)) -### middle phalanx of pedal digit 5 `http://purl.obolibrary.org/obo/UBERON_0004327` +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) SubClassOf [negative regulation of phosphorus metabolic process](http://purl.obolibrary.org/obo/GO_0010563) -#### Added -- [middle phalanx of pedal digit 5](http://purl.obolibrary.org/obo/UBERON_0004327) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) -- [middle phalanx of pedal digit 5](http://purl.obolibrary.org/obo/UBERON_0004327) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903579) SubClassOf [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) -### mineralized cartilage tissue `http://purl.obolibrary.org/obo/UBERON_4000088` +### negative regulation of ATP-dependent activity `http://purl.obolibrary.org/obo/GO_0032780` #### Removed -- [mineralized cartilage tissue](http://purl.obolibrary.org/obo/UBERON_4000088) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [mineralized cartilage tissue](http://purl.obolibrary.org/obo/UBERON_4000088) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of ATP-dependent activity](http://purl.obolibrary.org/obo/GO_0032780) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +#### Added +- [negative regulation of ATP-dependent activity](http://purl.obolibrary.org/obo/GO_0032780) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### monocyte `http://purl.obolibrary.org/obo/CL_0000576` +### negative regulation of DNA binding `http://purl.obolibrary.org/obo/GO_0043392` +#### Removed +- [negative regulation of DNA binding](http://purl.obolibrary.org/obo/GO_0043392) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [monocyte](http://purl.obolibrary.org/obo/CL_0000576) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [negative regulation of DNA binding](http://purl.obolibrary.org/obo/GO_0043392) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### mononuclear cell `http://purl.obolibrary.org/obo/CL_0000842` +### negative regulation of RNA binding `http://purl.obolibrary.org/obo/GO_1905215` +#### Removed +- [negative regulation of RNA binding](http://purl.obolibrary.org/obo/GO_1905215) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [mononuclear cell](http://purl.obolibrary.org/obo/CL_0000842) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [negative regulation of RNA binding](http://purl.obolibrary.org/obo/GO_1905215) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### mononuclear osteoclast `http://purl.obolibrary.org/obo/CL_0000778` -#### Removed -- [mononuclear osteoclast](http://purl.obolibrary.org/obo/CL_0000778) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### negative regulation of adenosine receptor signaling pathway `http://purl.obolibrary.org/obo/GO_0060169` + +#### Added +- [negative regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060169) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of adenosine receptor signaling pathway" + +- [negative regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060169) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of adenosine receptor signalling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [mononuclear osteoclast](http://purl.obolibrary.org/obo/CL_0000778) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060169) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0060169" +- [negative regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060169) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents, or reduces the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" +- [negative regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060169) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### motor neuron `http://purl.obolibrary.org/obo/CL_0000100` +- Class: [negative regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060169) -#### Added -- [motor neuron](http://purl.obolibrary.org/obo/CL_0000100) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060169) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973)) -- [motor neuron](http://purl.obolibrary.org/obo/CL_0000100) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060169) SubClassOf [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) +- [negative regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060169) SubClassOf [negative regulation of G protein-coupled receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0045744) -### mucus secreting cell of bronchus submucosal gland `http://purl.obolibrary.org/obo/CL_4033022` -#### Removed -- [mucus secreting cell of bronchus submucosal gland](http://purl.obolibrary.org/obo/CL_4033022) SubClassOf [endoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004119) +- [negative regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060169) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) -- [mucus secreting cell of bronchus submucosal gland](http://purl.obolibrary.org/obo/CL_4033022) SubClassOf [mucus secreting cell](http://purl.obolibrary.org/obo/CL_0000319) -- [mucus secreting cell of bronchus submucosal gland](http://purl.obolibrary.org/obo/CL_4033022) SubClassOf [exocrine cell](http://purl.obolibrary.org/obo/CL_0000152) +### negative regulation of adenosine transport `http://purl.obolibrary.org/obo/GO_0032250` #### Added -- [mucus secreting cell of bronchus submucosal gland](http://purl.obolibrary.org/obo/CL_4033022) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of adenosine transport" -- [mucus secreting cell of bronchus submucosal gland](http://purl.obolibrary.org/obo/CL_4033022) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032250" -- [mucus secreting cell of bronchus submucosal gland](http://purl.obolibrary.org/obo/CL_4033022) SubClassOf [bronchial epithelial cell](http://purl.obolibrary.org/obo/CL_0002328) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of adenosine transport" -- [mucus secreting cell of bronchus submucosal gland](http://purl.obolibrary.org/obo/CL_4033022) SubClassOf [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of adenosine transport" +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of adenosine transport" -### mucus secreting cell of trachea gland `http://purl.obolibrary.org/obo/CL_4033020` -#### Removed -- [mucus secreting cell of trachea gland](http://purl.obolibrary.org/obo/CL_4033020) SubClassOf [mucus secreting cell](http://purl.obolibrary.org/obo/CL_0000319) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [mucus secreting cell of trachea gland](http://purl.obolibrary.org/obo/CL_4033020) SubClassOf [endoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004119) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [mucus secreting cell of trachea gland](http://purl.obolibrary.org/obo/CL_4033020) SubClassOf [exocrine cell](http://purl.obolibrary.org/obo/CL_0000152) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of adenosine transport" -#### Added -- [mucus secreting cell of trachea gland](http://purl.obolibrary.org/obo/CL_4033020) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) -- [mucus secreting cell of trachea gland](http://purl.obolibrary.org/obo/CL_4033020) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238)) -- [mucus secreting cell of trachea gland](http://purl.obolibrary.org/obo/CL_4033020) SubClassOf [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) SubClassOf [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) -- [mucus secreting cell of trachea gland](http://purl.obolibrary.org/obo/CL_4033020) SubClassOf [tracheal epithelial cell](http://purl.obolibrary.org/obo/CL_0000307) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) +- [negative regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032250) SubClassOf [regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032249) -### mucus secreting cell of tracheobronchial tree submucosal gland `http://purl.obolibrary.org/obo/CL_4033037` -#### Added -- [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) [date](http://purl.org/dc/terms/date) "2023-04-20T10:55:50Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +### negative regulation of apolipoprotein binding `http://purl.obolibrary.org/obo/GO_2000657` +#### Removed +- [negative regulation of apolipoprotein binding](http://purl.obolibrary.org/obo/GO_2000657) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) [label](http://www.w3.org/2000/01/rdf-schema#label) "mucus secreting cell of tracheobronchial tree submucosal gland" +#### Added +- [negative regulation of apolipoprotein binding](http://purl.obolibrary.org/obo/GO_2000657) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A mucus secreting cell of a submucosal gland of the tracheobronchial tree." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30864819" -- [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +### negative regulation of binding `http://purl.obolibrary.org/obo/GO_0051100` +#### Removed +- [negative regulation of binding](http://purl.obolibrary.org/obo/GO_0051100) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- Class: [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) +#### Added +- [negative regulation of binding](http://purl.obolibrary.org/obo/GO_0051100) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) EquivalentTo [mucus secreting cell](http://purl.obolibrary.org/obo/CL_0000319) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [tracheobronchial tree](http://purl.obolibrary.org/obo/UBERON_0007196)) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [airway submucosal gland](http://purl.obolibrary.org/obo/UBERON_8410077)) -- [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [tracheobronchial tree](http://purl.obolibrary.org/obo/UBERON_0007196) +### negative regulation of calcium ion binding `http://purl.obolibrary.org/obo/GO_1901877` +#### Removed +- [negative regulation of calcium ion binding](http://purl.obolibrary.org/obo/GO_1901877) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) SubClassOf [epithelial cell of tracheobronchial tree](http://purl.obolibrary.org/obo/CL_0002202) +#### Added +- [negative regulation of calcium ion binding](http://purl.obolibrary.org/obo/GO_1901877) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) SubClassOf [exocrine cell](http://purl.obolibrary.org/obo/CL_0000152) -- [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [airway submucosal gland](http://purl.obolibrary.org/obo/UBERON_8410077) +### negative regulation of calcium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1901020` +#### Removed +- [negative regulation of calcium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901020) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [mucus secreting cell of tracheobronchial tree submucosal gland](http://purl.obolibrary.org/obo/CL_4033037) SubClassOf [mucus secreting cell](http://purl.obolibrary.org/obo/CL_0000319) +#### Added +- [negative regulation of calcium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901020) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### multinuclear osteoclast `http://purl.obolibrary.org/obo/CL_0000779` +### negative regulation of catalytic activity `http://purl.obolibrary.org/obo/GO_0043086` #### Removed -- [multinuclear osteoclast](http://purl.obolibrary.org/obo/CL_0000779) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [multinuclear osteoclast](http://purl.obolibrary.org/obo/CL_0000779) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of catalytic activity](http://purl.obolibrary.org/obo/GO_0043086) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +#### Added +- [negative regulation of catalytic activity](http://purl.obolibrary.org/obo/GO_0043086) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### muscle cell `http://purl.obolibrary.org/obo/CL_0000187` +### negative regulation of chromatin binding `http://purl.obolibrary.org/obo/GO_0035562` #### Removed -- [muscle cell](http://purl.obolibrary.org/obo/CL_0000187) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [negative regulation of chromatin binding](http://purl.obolibrary.org/obo/GO_0035562) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +#### Added +- [negative regulation of chromatin binding](http://purl.obolibrary.org/obo/GO_0035562) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### muscle of abdomen `http://purl.obolibrary.org/obo/UBERON_0002378` +### negative regulation of collagen binding `http://purl.obolibrary.org/obo/GO_0033342` +#### Removed +- [negative regulation of collagen binding](http://purl.obolibrary.org/obo/GO_0033342) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [muscle of abdomen](http://purl.obolibrary.org/obo/UBERON_0002378) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of collagen binding](http://purl.obolibrary.org/obo/GO_0033342) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [muscle of abdomen](http://purl.obolibrary.org/obo/UBERON_0002378) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### muscle of arm `http://purl.obolibrary.org/obo/UBERON_0001499` +### negative regulation of deoxyribonuclease activity `http://purl.obolibrary.org/obo/GO_0032076` +#### Removed +- [negative regulation of deoxyribonuclease activity](http://purl.obolibrary.org/obo/GO_0032076) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [muscle of arm](http://purl.obolibrary.org/obo/UBERON_0001499) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of deoxyribonuclease activity](http://purl.obolibrary.org/obo/GO_0032076) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [muscle of arm](http://purl.obolibrary.org/obo/UBERON_0001499) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### muscle of back `http://purl.obolibrary.org/obo/UBERON_0002324` +### negative regulation of euchromatin binding `http://purl.obolibrary.org/obo/GO_1904794` +#### Removed +- [negative regulation of euchromatin binding](http://purl.obolibrary.org/obo/GO_1904794) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [muscle of back](http://purl.obolibrary.org/obo/UBERON_0002324) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of euchromatin binding](http://purl.obolibrary.org/obo/GO_1904794) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [muscle of back](http://purl.obolibrary.org/obo/UBERON_0002324) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### muscle of larynx `http://purl.obolibrary.org/obo/UBERON_0001568` +### negative regulation of hydrolase activity `http://purl.obolibrary.org/obo/GO_0051346` +#### Removed +- [negative regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051346) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [muscle of larynx](http://purl.obolibrary.org/obo/UBERON_0001568) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051346) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [muscle of larynx](http://purl.obolibrary.org/obo/UBERON_0001568) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### muscle of leg `http://purl.obolibrary.org/obo/UBERON_0001383` +### negative regulation of ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0032413` +#### Removed +- [negative regulation of ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0032413) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [muscle of leg](http://purl.obolibrary.org/obo/UBERON_0001383) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0032413) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [muscle of leg](http://purl.obolibrary.org/obo/UBERON_0001383) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### muscle of manus `http://purl.obolibrary.org/obo/UBERON_0001500` +### negative regulation of iron ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1904255` +#### Removed +- [negative regulation of iron ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1904255) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [muscle of manus](http://purl.obolibrary.org/obo/UBERON_0001500) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of iron ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1904255) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [muscle of manus](http://purl.obolibrary.org/obo/UBERON_0001500) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### muscle of neck `http://purl.obolibrary.org/obo/UBERON_0002377` +### negative regulation of kinase activity `http://purl.obolibrary.org/obo/GO_0033673` +#### Removed +- [negative regulation of kinase activity](http://purl.obolibrary.org/obo/GO_0033673) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [muscle of neck](http://purl.obolibrary.org/obo/UBERON_0002377) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of kinase activity](http://purl.obolibrary.org/obo/GO_0033673) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### negative regulation of ligase activity `http://purl.obolibrary.org/obo/GO_0051352` +#### Removed +- [negative regulation of ligase activity](http://purl.obolibrary.org/obo/GO_0051352) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [muscle of neck](http://purl.obolibrary.org/obo/UBERON_0002377) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [negative regulation of ligase activity](http://purl.obolibrary.org/obo/GO_0051352) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### muscle of shoulder `http://purl.obolibrary.org/obo/UBERON_0001482` +### negative regulation of lipid binding `http://purl.obolibrary.org/obo/GO_1900131` +#### Removed +- [negative regulation of lipid binding](http://purl.obolibrary.org/obo/GO_1900131) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [muscle of shoulder](http://purl.obolibrary.org/obo/UBERON_0001482) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of lipid binding](http://purl.obolibrary.org/obo/GO_1900131) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + -- [muscle of shoulder](http://purl.obolibrary.org/obo/UBERON_0001482) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### negative regulation of lipid transporter activity `http://purl.obolibrary.org/obo/GO_0110114` +#### Removed +- [negative regulation of lipid transporter activity](http://purl.obolibrary.org/obo/GO_0110114) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [negative regulation of lipid transporter activity](http://purl.obolibrary.org/obo/GO_0110114) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### musculature of body `http://purl.obolibrary.org/obo/UBERON_0000383` +### negative regulation of microtubule binding `http://purl.obolibrary.org/obo/GO_1904527` +#### Removed +- [negative regulation of microtubule binding](http://purl.obolibrary.org/obo/GO_1904527) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [musculature of body](http://purl.obolibrary.org/obo/UBERON_0000383) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of microtubule binding](http://purl.obolibrary.org/obo/GO_1904527) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [musculature of body](http://purl.obolibrary.org/obo/UBERON_0000383) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +### negative regulation of molecular function `http://purl.obolibrary.org/obo/GO_0044092` +#### Removed +- [negative regulation of molecular function](http://purl.obolibrary.org/obo/GO_0044092) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [negative regulation of molecular function](http://purl.obolibrary.org/obo/GO_0044092) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### mydriatic agent `http://purl.obolibrary.org/obo/CHEBI_50513` +### negative regulation of nuclease activity `http://purl.obolibrary.org/obo/GO_0032074` +#### Removed +- [negative regulation of nuclease activity](http://purl.obolibrary.org/obo/GO_0032074) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [mydriatic agent](http://purl.obolibrary.org/obo/CHEBI_50513) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:50513" +- [negative regulation of nuclease activity](http://purl.obolibrary.org/obo/GO_0032074) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [mydriatic agent](http://purl.obolibrary.org/obo/CHEBI_50513) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Agent that dilates the pupil. Used in eye diseases and to facilitate eye examination. It may be either a sympathomimetic or parasympatholytic. The latter cause cycloplegia or paralysis of accommodation at high doses and may precipitate glaucoma." -- [mydriatic agent](http://purl.obolibrary.org/obo/CHEBI_50513) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +### negative regulation of nucleoside metabolic process `http://purl.obolibrary.org/obo/GO_0045978` -- [mydriatic agent](http://purl.obolibrary.org/obo/CHEBI_50513) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +#### Added +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleosides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [mydriatic agent](http://purl.obolibrary.org/obo/CHEBI_50513) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "mydriatics" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of nucleoside metabolic process" -- [mydriatic agent](http://purl.obolibrary.org/obo/CHEBI_50513) [label](http://www.w3.org/2000/01/rdf-schema#label) "mydriatic agent" +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- Class: [mydriatic agent](http://purl.obolibrary.org/obo/CHEBI_50513) +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of nucleoside metabolism" -- [mydriatic agent](http://purl.obolibrary.org/obo/CHEBI_50513) SubClassOf [drug](http://purl.obolibrary.org/obo/CHEBI_23888) +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of nucleoside metabolic process" +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of nucleoside metabolic process" -### myeloid cell `http://purl.obolibrary.org/obo/CL_0000763` -#### Removed -- [myeloid cell](http://purl.obolibrary.org/obo/CL_0000763) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of nucleoside metabolic process" -- [myeloid cell](http://purl.obolibrary.org/obo/CL_0000763) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0045978" +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of nucleoside metabolic process" +- Class: [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) -### myeloid dendritic cell `http://purl.obolibrary.org/obo/CL_0000782` +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116)) -#### Added -- [myeloid dendritic cell](http://purl.obolibrary.org/obo/CL_0000782) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) SubClassOf [negative regulation of small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0062014) + +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) SubClassOf [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) + +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) -- [myeloid dendritic cell](http://purl.obolibrary.org/obo/CL_0000782) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045978) SubClassOf [negative regulation of nucleobase-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0045934) -### myeloid leukocyte `http://purl.obolibrary.org/obo/CL_0000766` +### negative regulation of nucleoside transport `http://purl.obolibrary.org/obo/GO_0032243` #### Added -- [myeloid leukocyte](http://purl.obolibrary.org/obo/CL_0000766) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [myeloid leukocyte](http://purl.obolibrary.org/obo/CL_0000766) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032243" +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of nucleoside transport" -### myeloid suppressor cell `http://purl.obolibrary.org/obo/CL_0000889` +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of nucleoside transport" -#### Added -- [myeloid suppressor cell](http://purl.obolibrary.org/obo/CL_0000889) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of nucleoside transport" +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of nucleoside transport" -### mylohyoid muscle `http://purl.obolibrary.org/obo/UBERON_0001564` +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [mylohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001564) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of nucleoside transport" -- [mylohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001564) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858)) -### myoepithelial cell `http://purl.obolibrary.org/obo/CL_0000185` -#### Removed -- [myoepithelial cell](http://purl.obolibrary.org/obo/CL_0000185) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) SubClassOf [negative regulation of nucleobase-containing compound transport](http://purl.obolibrary.org/obo/GO_0032240) -- [myoepithelial cell](http://purl.obolibrary.org/obo/CL_0000185) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) +- [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) SubClassOf [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) -### myoepithelial cell of bronchus submucosal gland `http://purl.obolibrary.org/obo/CL_4033003` +### negative regulation of nucleotide biosynthetic process `http://purl.obolibrary.org/obo/GO_0030809` #### Added -- [myoepithelial cell of bronchus submucosal gland](http://purl.obolibrary.org/obo/CL_4033003) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of nucleotide biosynthetic process" -- [myoepithelial cell of bronchus submucosal gland](http://purl.obolibrary.org/obo/CL_4033003) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0030809" +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of nucleotide formation" -### myoepithelial cell of trachea gland `http://purl.obolibrary.org/obo/CL_4033021` +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of nucleotide anabolism" -#### Added -- [myoepithelial cell of trachea gland](http://purl.obolibrary.org/obo/CL_4033021) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of nucleotide biosynthesis" -- [myoepithelial cell of trachea gland](http://purl.obolibrary.org/obo/CL_4033021) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of nucleotide biosynthetic process" +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of nucleotide biosynthetic process" -### nasal bone `http://purl.obolibrary.org/obo/UBERON_0001681` +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of nucleotide biosynthetic process" -#### Added -- [nasal bone](http://purl.obolibrary.org/obo/UBERON_0001681) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [nasal bone](http://purl.obolibrary.org/obo/UBERON_0001681) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of nucleotide synthesis" +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of nucleotide biosynthetic process" -### nasalis muscle `http://purl.obolibrary.org/obo/UBERON_0010953` +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -#### Added -- [nasalis muscle](http://purl.obolibrary.org/obo/UBERON_0010953) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) -- [nasalis muscle](http://purl.obolibrary.org/obo/UBERON_0010953) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165)) +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) -### navicular bone of pes `http://purl.obolibrary.org/obo/UBERON_0001451` +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) SubClassOf [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) -#### Added -- [navicular bone of pes](http://purl.obolibrary.org/obo/UBERON_0001451) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) SubClassOf [negative regulation of cellular biosynthetic process](http://purl.obolibrary.org/obo/GO_0031327) -- [navicular bone of pes](http://purl.obolibrary.org/obo/UBERON_0001451) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) SubClassOf [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) -### neck of femur `http://purl.obolibrary.org/obo/UBERON_0007119` +### negative regulation of nucleotide catabolic process `http://purl.obolibrary.org/obo/GO_0030812` #### Added -- [neck of femur](http://purl.obolibrary.org/obo/UBERON_0007119) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0030812" -- [neck of femur](http://purl.obolibrary.org/obo/UBERON_0007119) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of nucleotide catabolic process" -### neck of fibula `http://purl.obolibrary.org/obo/UBERON_0018673` +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of nucleotide degradation" -#### Added -- [neck of fibula](http://purl.obolibrary.org/obo/UBERON_0018673) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of nucleotide breakdown" -- [neck of fibula](http://purl.obolibrary.org/obo/UBERON_0018673) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of nucleotide catabolic process" +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of nucleotide catabolic process" -### neck of talus `http://purl.obolibrary.org/obo/UBERON_0015180` +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of nucleotide catabolic process" -#### Added -- [neck of talus](http://purl.obolibrary.org/obo/UBERON_0015180) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of nucleotide catabolism" -- [neck of talus](http://purl.obolibrary.org/obo/UBERON_0015180) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of nucleotide catabolic process" -### negative regulation of ATP-dependent activity `http://purl.obolibrary.org/obo/GO_0032780` +- Class: [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) -#### Added -- [negative regulation of ATP-dependent activity](http://purl.obolibrary.org/obo/GO_0032780) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166)) +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) SubClassOf [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) -### negative regulation of DNA binding `http://purl.obolibrary.org/obo/GO_0043392` +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) -#### Added -- [negative regulation of DNA binding](http://purl.obolibrary.org/obo/GO_0043392) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) SubClassOf [negative regulation of cellular catabolic process](http://purl.obolibrary.org/obo/GO_0031330) +- [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) SubClassOf [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) -### negative regulation of RNA binding `http://purl.obolibrary.org/obo/GO_1905215` + +### negative regulation of nucleotide metabolic process `http://purl.obolibrary.org/obo/GO_0045980` #### Added -- [negative regulation of RNA binding](http://purl.obolibrary.org/obo/GO_1905215) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of nucleotide metabolism" +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of nucleotide metabolic process" -### negative regulation of apolipoprotein binding `http://purl.obolibrary.org/obo/GO_2000657` +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -#### Added -- [negative regulation of apolipoprotein binding](http://purl.obolibrary.org/obo/GO_2000657) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of nucleotide metabolic process" +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0045980" -### negative regulation of binding `http://purl.obolibrary.org/obo/GO_0051100` +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of nucleotide metabolic process" -#### Added -- [negative regulation of binding](http://purl.obolibrary.org/obo/GO_0051100) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of nucleotide metabolic process" +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### negative regulation of calcium ion binding `http://purl.obolibrary.org/obo/GO_1901877` +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of nucleotide metabolic process" -#### Added -- [negative regulation of calcium ion binding](http://purl.obolibrary.org/obo/GO_1901877) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- Class: [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117)) -### negative regulation of calcium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1901020` +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) -#### Added -- [negative regulation of calcium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901020) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) SubClassOf [negative regulation of small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0062014) +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) SubClassOf [negative regulation of phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0045936) -### negative regulation of catalytic activity `http://purl.obolibrary.org/obo/GO_0043086` +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) SubClassOf [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) -#### Added -- [negative regulation of catalytic activity](http://purl.obolibrary.org/obo/GO_0043086) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) SubClassOf [negative regulation of nucleobase-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0045934) -### negative regulation of cell death `http://purl.obolibrary.org/obo/GO_0060548` +### negative regulation of peptidase activity `http://purl.obolibrary.org/obo/GO_0010466` #### Removed -- [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of cell death" +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2009-04-13T01:56:10Z" +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of peptidase activity" -- [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "dph" +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0010466" -- [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death." +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tb" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:BHF" +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- Class: [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) -- [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0060548" +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233)) -- Class: [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [proteolysis](http://purl.obolibrary.org/obo/GO_0006508) + - [IAO_0000233](http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/13926" -- [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [cell death](http://purl.obolibrary.org/obo/GO_0008219)) +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) SubClassOf [negative regulation of proteolysis](http://purl.obolibrary.org/obo/GO_0045861) -- [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [cell death](http://purl.obolibrary.org/obo/GO_0008219) +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) SubClassOf [negative regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051346) -- [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) SubClassOf [negative regulation of cellular process](http://purl.obolibrary.org/obo/GO_0048523) +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) -- [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) SubClassOf [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) +- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) SubClassOf [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) -### negative regulation of chromatin binding `http://purl.obolibrary.org/obo/GO_0035562` +### negative regulation of protein binding `http://purl.obolibrary.org/obo/GO_0032091` +#### Removed +- [negative regulation of protein binding](http://purl.obolibrary.org/obo/GO_0032091) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [negative regulation of chromatin binding](http://purl.obolibrary.org/obo/GO_0035562) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of protein binding](http://purl.obolibrary.org/obo/GO_0032091) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### negative regulation of collagen binding `http://purl.obolibrary.org/obo/GO_0033342` +### negative regulation of protein kinase activity `http://purl.obolibrary.org/obo/GO_0006469` +#### Removed +- [negative regulation of protein kinase activity](http://purl.obolibrary.org/obo/GO_0006469) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [negative regulation of collagen binding](http://purl.obolibrary.org/obo/GO_0033342) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of protein kinase activity](http://purl.obolibrary.org/obo/GO_0006469) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### negative regulation of deoxyribonuclease activity `http://purl.obolibrary.org/obo/GO_0032076` +### negative regulation of protein serine/threonine kinase activity `http://purl.obolibrary.org/obo/GO_0071901` +#### Removed +- [negative regulation of protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0071901) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [negative regulation of deoxyribonuclease activity](http://purl.obolibrary.org/obo/GO_0032076) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0071901) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### negative regulation of epinephrine secretion `http://purl.obolibrary.org/obo/GO_0032811` +### negative regulation of protein tyrosine kinase activity `http://purl.obolibrary.org/obo/GO_0061099` #### Removed -- [negative regulation of epinephrine secretion](http://purl.obolibrary.org/obo/GO_0032811) SubClassOf [negative regulation of catecholamine secretion](http://purl.obolibrary.org/obo/GO_0033604) +- [negative regulation of protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0061099) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [negative regulation of epinephrine secretion](http://purl.obolibrary.org/obo/GO_0032811) SubClassOf [negative regulation of secretion](http://purl.obolibrary.org/obo/GO_0051048) +- [negative regulation of protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0061099) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### negative regulation of euchromatin binding `http://purl.obolibrary.org/obo/GO_1904794` +### negative regulation of purine nucleobase metabolic process `http://purl.obolibrary.org/obo/GO_0045982` #### Added -- [negative regulation of euchromatin binding](http://purl.obolibrary.org/obo/GO_1904794) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of purine base metabolic process" + +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of purine base metabolic process" +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving purine nucleobases." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -### negative regulation of hepatic stellate cell activation `http://purl.obolibrary.org/obo/GO_2000490` +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of purine base metabolic process" -#### Added -- [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of hepatic stellate cell activation" +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of purine base metabolic process" -- [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of purine nucleobase metabolic process" -- [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-03-14T03:49:18Z" +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents or reduces the frequency, rate or extent of hepatic stellate cell activation." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of purine base metabolism" + +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of purine base metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:2000490" +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0045982" -- [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- Class: [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) -- Class: [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144)) -- [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733)) +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) SubClassOf [negative regulation of small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0062014) -- [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) SubClassOf [negative regulation of cell activation](http://purl.obolibrary.org/obo/GO_0050866) +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) -- [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) SubClassOf [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) SubClassOf [negative regulation of nucleobase-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0045934) -- [negative regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000490) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) +- [negative regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045982) SubClassOf [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) -### negative regulation of hepatic stellate cell migration `http://purl.obolibrary.org/obo/GO_0061871` +### negative regulation of purine nucleoside transport `http://purl.obolibrary.org/obo/GO_0032247` #### Added -- [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0061871" +- [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of purine nucleoside transport" -- [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2017-05-01T13:20:51Z" +- [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of purine nucleoside transport" -- [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of hepatic stellate cell migration" +- [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of purine nucleoside transport" -- [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents or reduces the frequency, rate or extent of hepatic stellate cell migration." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24204762" +- [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032247" -- [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "dph" +- [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of purine nucleoside transport" -- [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- Class: [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) +- [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of purine nucleoside transport" -- [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868)) +- [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) SubClassOf [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) +- Class: [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) -- [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) SubClassOf [negative regulation of fibroblast migration](http://purl.obolibrary.org/obo/GO_0010764) +- [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) SubClassOf [regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032245) -- [negative regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061871) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) +- [negative regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032247) SubClassOf [negative regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032243) -### negative regulation of hepatic stellate cell proliferation `http://purl.obolibrary.org/obo/GO_1904898` +### negative regulation of purine nucleotide biosynthetic process `http://purl.obolibrary.org/obo/GO_1900372` #### Added -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of perisinusoidal cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of purine nucleotide synthesis" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of perisinusoidal cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of purine nucleotide formation" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of Ito cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of purine nucleotide biosynthesis" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1904898" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of purine nucleotide anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of hepatic stellate cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of purine nucleotide biosynthetic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of hepatic perisinusoidal cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of purine nucleotide biosynthetic process" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of hepatic perisinusoidal cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of purine nucleotide formation" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of hepatic stellate cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of purine nucleotide biosynthesis" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of purine nucleotide synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of Ito cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "inhibition of purine nucleotide biosynthesis" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of hepatic perisinusoidal cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "inhibition of purine nucleotide synthesis" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents or reduces the frequency, rate or extent of hepatic stellate cell proliferation." +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of purine nucleotide biosynthetic process" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:15358192" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-04-17T12:32:27Z" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000058" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of Ito cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of purine nucleotide formation" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "sl" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "krc" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2016-01-14T15:57:06Z" - -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of perisinusoidal cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of purine nucleotide synthesis" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of hepatic perisinusoidal cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of purine nucleotide formation" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of hepatic stellate cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of purine nucleotide anabolism" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of Ito cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of purine nucleotide biosynthetic process" + +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "inhibition of purine nucleotide anabolism" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of perisinusoidal cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "inhibition of purine nucleotide formation" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of hepatic perisinusoidal cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1900372" + +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of purine nucleotide anabolism" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of hepatic stellate cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents or reduces the frequency, rate or extent of purine nucleotide biosynthetic processes." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of Ito cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of purine nucleotide biosynthesis" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of perisinusoidal cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of purine nucleotide biosynthetic process" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of hepatic stellate cell proliferation" +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of purine nucleotide biosynthesis" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- Class: [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of purine nucleotide anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922)) +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of purine nucleotide synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) +- Class: [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) SubClassOf [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164)) -- [negative regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904898) SubClassOf [negative regulation of fibroblast proliferation](http://purl.obolibrary.org/obo/GO_0048147) +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) SubClassOf [negative regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030809) +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) -### negative regulation of hydrolase activity `http://purl.obolibrary.org/obo/GO_0051346` +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) SubClassOf [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) -#### Added -- [negative regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051346) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900372) SubClassOf [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) -### negative regulation of ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0032413` +### negative regulation of purine nucleotide catabolic process `http://purl.obolibrary.org/obo/GO_0033122` #### Added -- [negative regulation of ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0032413) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0033122" +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of purine nucleotide breakdown" -### negative regulation of iron ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1904255` +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of purine nucleotide catabolic process" -#### Added -- [negative regulation of iron ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1904255) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of purine nucleotide catabolism" -### negative regulation of kinase activity `http://purl.obolibrary.org/obo/GO_0033673` +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -#### Added -- [negative regulation of kinase activity](http://purl.obolibrary.org/obo/GO_0033673) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of purine nucleotide degradation" +- Class: [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) -### negative regulation of ligase activity `http://purl.obolibrary.org/obo/GO_0051352` +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195)) -#### Added -- [negative regulation of ligase activity](http://purl.obolibrary.org/obo/GO_0051352) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) SubClassOf [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) SubClassOf [negative regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030812) -### negative regulation of lipid binding `http://purl.obolibrary.org/obo/GO_1900131` +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) -#### Added -- [negative regulation of lipid binding](http://purl.obolibrary.org/obo/GO_1900131) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033122) SubClassOf [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) -### negative regulation of lipid transporter activity `http://purl.obolibrary.org/obo/GO_0110114` +### negative regulation of purine nucleotide metabolic process `http://purl.obolibrary.org/obo/GO_1900543` #### Added -- [negative regulation of lipid transporter activity](http://purl.obolibrary.org/obo/GO_0110114) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "down regulation of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of purine nucleotide metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### negative regulation of microtubule binding `http://purl.obolibrary.org/obo/GO_1904527` +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [negative regulation of microtubule binding](http://purl.obolibrary.org/obo/GO_1904527) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "krc" +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "negative regulation of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### negative regulation of molecular function `http://purl.obolibrary.org/obo/GO_0044092` +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "down-regulation of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [negative regulation of molecular function](http://purl.obolibrary.org/obo/GO_0044092) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1900543" +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [label](http://www.w3.org/2000/01/rdf-schema#label) "negative regulation of purine nucleotide metabolic process" -### negative regulation of neuron death `http://purl.obolibrary.org/obo/GO_1901215` -#### Removed -- [negative regulation of neuron death](http://purl.obolibrary.org/obo/GO_1901215) SubClassOf [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [negative regulation of neuron death](http://purl.obolibrary.org/obo/GO_1901215) SubClassOf [negative regulation of cellular process](http://purl.obolibrary.org/obo/GO_0048523) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "down regulation of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "negative regulation of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### negative regulation of nuclease activity `http://purl.obolibrary.org/obo/GO_0032074` +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of purine nucleotide metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [negative regulation of nuclease activity](http://purl.obolibrary.org/obo/GO_0032074) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "negative regulation of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### negative regulation of peptidase activity `http://purl.obolibrary.org/obo/GO_0010466` - -#### Added -- [negative regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010466) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "downregulation of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "downregulation of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### negative regulation of programmed cell death `http://purl.obolibrary.org/obo/GO_0043069` -#### Removed -- [negative regulation of programmed cell death](http://purl.obolibrary.org/obo/GO_0043069) SubClassOf [negative regulation of cell death](http://purl.obolibrary.org/obo/GO_0060548) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-05-11T05:44:21Z" -#### Added -- [negative regulation of programmed cell death](http://purl.obolibrary.org/obo/GO_0043069) SubClassOf [negative regulation of cellular process](http://purl.obolibrary.org/obo/GO_0048523) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that stops, prevents or reduces the frequency, rate or extent of purine nucleotide metabolic process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### negative regulation of protein binding `http://purl.obolibrary.org/obo/GO_0032091` +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [negative regulation of protein binding](http://purl.obolibrary.org/obo/GO_0032091) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down regulation of purine nucleotide metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "downregulation of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### negative regulation of protein kinase activity `http://purl.obolibrary.org/obo/GO_0006469` +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "down-regulation of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [negative regulation of protein kinase activity](http://purl.obolibrary.org/obo/GO_0006469) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "inhibition of purine nucleotide metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "down-regulation of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### negative regulation of protein serine/threonine kinase activity `http://purl.obolibrary.org/obo/GO_0071901` +- Class: [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) -#### Added -- [negative regulation of protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0071901) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163)) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) SubClassOf [negatively regulates](http://purl.obolibrary.org/obo/RO_0002212) some [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) -### negative regulation of protein tyrosine kinase activity `http://purl.obolibrary.org/obo/GO_0061099` +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) SubClassOf [negative regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045980) -#### Added -- [negative regulation of protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0061099) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900543) SubClassOf [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) ### negative regulation of receptor binding `http://purl.obolibrary.org/obo/GO_1900121` +#### Removed +- [negative regulation of receptor binding](http://purl.obolibrary.org/obo/GO_1900121) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [negative regulation of receptor binding](http://purl.obolibrary.org/obo/GO_1900121) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of receptor binding](http://purl.obolibrary.org/obo/GO_1900121) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) ### negative regulation of signaling receptor activity `http://purl.obolibrary.org/obo/GO_2000272` +#### Removed +- [negative regulation of signaling receptor activity](http://purl.obolibrary.org/obo/GO_2000272) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [negative regulation of signaling receptor activity](http://purl.obolibrary.org/obo/GO_2000272) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of signaling receptor activity](http://purl.obolibrary.org/obo/GO_2000272) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) ### negative regulation of sodium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_2000650` +#### Removed +- [negative regulation of sodium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_2000650) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [negative regulation of sodium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_2000650) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of sodium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_2000650) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) ### negative regulation of transferase activity `http://purl.obolibrary.org/obo/GO_0051348` +#### Removed +- [negative regulation of transferase activity](http://purl.obolibrary.org/obo/GO_0051348) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [negative regulation of transferase activity](http://purl.obolibrary.org/obo/GO_0051348) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of transferase activity](http://purl.obolibrary.org/obo/GO_0051348) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) ### negative regulation of transporter activity `http://purl.obolibrary.org/obo/GO_0032410` +#### Removed +- [negative regulation of transporter activity](http://purl.obolibrary.org/obo/GO_0032410) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [negative regulation of transporter activity](http://purl.obolibrary.org/obo/GO_0032410) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [negative regulation of transporter activity](http://purl.obolibrary.org/obo/GO_0032410) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### neural cell `http://purl.obolibrary.org/obo/CL_0002319` -#### Removed -- [neural cell](http://purl.obolibrary.org/obo/CL_0002319) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +### neuron `http://purl.obolibrary.org/obo/CL_0000540` +#### Added +- [neuron](http://purl.obolibrary.org/obo/CL_0000540) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### neurectoderm `http://purl.obolibrary.org/obo/UBERON_0002346` -#### Removed -- [neurectoderm](http://purl.obolibrary.org/obo/UBERON_0002346) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [primary neuron](http://purl.obolibrary.org/obo/CL_0000530) - - [source](http://www.geneontology.org/formats/oboInOwl#source) "ZFA" +### neurotransmitter transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0005326` +#### Added +- [neurotransmitter transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005326) SubClassOf [in taxon](http://purl.obolibrary.org/obo/RO_0002162) only [Eumetazoa](http://purl.obolibrary.org/obo/NCBITaxon_6072) + +- [neurotransmitter transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005326) SubClassOf [only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Eumetazoa](http://purl.obolibrary.org/obo/NCBITaxon_6072) -### neurocranium `http://purl.obolibrary.org/obo/UBERON_0001703` +### neurula stage `http://purl.obolibrary.org/obo/UBERON_0000110` #### Added -- [neurocranium](http://purl.obolibrary.org/obo/UBERON_0001703) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [neurula stage](http://purl.obolibrary.org/obo/UBERON_0000110) [taxon_notes](http://purl.obolibrary.org/obo/UBPROP_0000008) "In zebrafish, the times of neurulation and segmentation overlap so extensively there is no distinct neurula period of development, such as occurs largely before segmentation in amphibian embryos." -- [neurocranium](http://purl.obolibrary.org/obo/UBERON_0001703) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [neurula stage](http://purl.obolibrary.org/obo/UBERON_0000110) [see also](http://www.w3.org/2000/01/rdf-schema#seeAlso) "https://github.com/obophenotype/developmental-stage-ontologies/issues/84"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [neurula stage](http://purl.obolibrary.org/obo/UBERON_0000110) [dubious for taxon](http://purl.obolibrary.org/obo/RO_0002174) [Danio rerio](http://purl.obolibrary.org/obo/NCBITaxon_7955) -### neuroendocrine cell of epithelium of lobar bronchus `http://purl.obolibrary.org/obo/CL_4033010` + +### nucleobase-containing small molecule biosynthetic process `http://purl.obolibrary.org/obo/GO_0034404` #### Added -- [neuroendocrine cell of epithelium of lobar bronchus](http://purl.obolibrary.org/obo/CL_4033010) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleobase, nucleoside and nucleotide formation" -- [neuroendocrine cell of epithelium of lobar bronchus](http://purl.obolibrary.org/obo/CL_4033010) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleobase, nucleoside and nucleotide synthesis" +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### neuron of the forebrain `http://purl.obolibrary.org/obo/CL_0012001` +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleobase, nucleoside and nucleotide anabolism" -#### Added -- [neuron of the forebrain](http://purl.obolibrary.org/obo/CL_0012001) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [neuron of the forebrain](http://purl.obolibrary.org/obo/CL_0012001) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleobase, nucleoside and nucleotide biosynthesis" +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0034404" -### neuron projection bundle connecting eye with brain `http://purl.obolibrary.org/obo/UBERON_0004904` +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleobase-containing small molecule biosynthetic process" -#### Added -- [neuron projection bundle connecting eye with brain](http://purl.obolibrary.org/obo/UBERON_0004904) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) + +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) SubClassOf [nucleobase-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0034654) + +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) SubClassOf [small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0044283) -- [neuron projection bundle connecting eye with brain](http://purl.obolibrary.org/obo/UBERON_0004904) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) SubClassOf [nucleobase-containing small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0055086) -### neurotransmitter receptor activity `http://purl.obolibrary.org/obo/GO_0030594` +### nucleobase-containing small molecule catabolic process `http://purl.obolibrary.org/obo/GO_0034656` #### Added -- [neurotransmitter receptor activity](http://purl.obolibrary.org/obo/GO_0030594) SubClassOf [in taxon](http://purl.obolibrary.org/obo/RO_0002162) only [Metazoa](http://purl.obolibrary.org/obo/NCBITaxon_33208) +- [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleobase, nucleoside and nucleotide catabolism" -- [neurotransmitter receptor activity](http://purl.obolibrary.org/obo/GO_0030594) SubClassOf [only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Metazoa](http://purl.obolibrary.org/obo/NCBITaxon_33208) +- [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleobase-containing small molecule catabolic process" -### neutrophil `http://purl.obolibrary.org/obo/CL_0000775` +- [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0034656" -#### Added -- [neutrophil](http://purl.obolibrary.org/obo/CL_0000775) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleobase, nucleoside and nucleotide degradation" -### ninth thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006465` +- [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleobase, nucleoside and nucleotide breakdown" -#### Added -- [ninth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006465) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) -- [ninth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006465) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) SubClassOf [nucleobase-containing small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0055086) +- [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) SubClassOf [nucleobase-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0034655) -### non-striated muscle cell `http://purl.obolibrary.org/obo/CL_0008000` +- [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) SubClassOf [small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0044282) -#### Added -- [non-striated muscle cell](http://purl.obolibrary.org/obo/CL_0008000) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [non-striated muscle cell](http://purl.obolibrary.org/obo/CL_0008000) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### nucleophagy `http://purl.obolibrary.org/obo/GO_0044804` +#### Removed +- [nucleophagy](http://purl.obolibrary.org/obo/GO_0044804) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleophagy" +- [nucleophagy](http://purl.obolibrary.org/obo/GO_0044804) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleus degradation" -### nongranular leukocyte `http://purl.obolibrary.org/obo/CL_0002087` +- [nucleophagy](http://purl.obolibrary.org/obo/GO_0044804) [label](http://www.w3.org/2000/01/rdf-schema#label) "autophagy of nucleus" #### Added -- [nongranular leukocyte](http://purl.obolibrary.org/obo/CL_0002087) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [nucleophagy](http://purl.obolibrary.org/obo/GO_0044804) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleophagy" +- [nucleophagy](http://purl.obolibrary.org/obo/GO_0044804) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleus degradation" -### noradrenergic neuron `http://purl.obolibrary.org/obo/CL_0008025` -#### Removed -- [noradrenergic neuron](http://purl.obolibrary.org/obo/CL_0008025) SubClassOf [neuron](http://purl.obolibrary.org/obo/CL_0000540) +- [nucleophagy](http://purl.obolibrary.org/obo/GO_0044804) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "autophagy of nucleus" + + +### nucleoside `http://purl.obolibrary.org/obo/CHEBI_33838` #### Added -- [noradrenergic neuron](http://purl.obolibrary.org/obo/CL_0008025) SubClassOf [catecholaminergic neuron](http://purl.obolibrary.org/obo/CL_4033050) +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Nucleoside" +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Nucleoside" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -### nucleated thrombocyte `http://purl.obolibrary.org/obo/CL_0000762` +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents." -#### Added -- [nucleated thrombocyte](http://purl.obolibrary.org/obo/CL_0000762) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13661" -### obsolete glomerular visceral epithelium `http://purl.obolibrary.org/obo/UBERON_0006852` -#### Removed -- [obsolete glomerular visceral epithelium](http://purl.obolibrary.org/obo/UBERON_0006852) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00801" -- [obsolete glomerular visceral epithelium](http://purl.obolibrary.org/obo/UBERON_0006852) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [mass](http://purl.obolibrary.org/obo/chebi/mass) "116.115" +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:25611" +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleosides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### obsolete insect anterior dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001792` -#### Removed -- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [label](http://www.w3.org/2000/01/rdf-schema#label) "insect anterior dorsal histoblast nest abdominal" +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:7647" -- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) SubClassOf [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside" -#### Added -- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [deprecated](http://www.w3.org/2002/07/owl#deprecated) true +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleosides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001790" + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt." +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H8O3R2" -- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [label](http://www.w3.org/2000/01/rdf-schema#label) "obsolete insect anterior dorsal histoblast nest abdominal" +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "[C@H]1([C@H]([C@@H](*)[C@@H](O1)*)O)CO" -- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/obophenotype/uberon/issues/2867"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:33838" +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### obsolete insect dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001791` -#### Removed -- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [label](http://www.w3.org/2000/01/rdf-schema#label) "insect dorsal histoblast nest abdominal" +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "116.04734" -- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) SubClassOf [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) SubClassOf [insect dorsal imaginal precursor](http://purl.obolibrary.org/obo/UBERON_6005831) +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "a nucleoside" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -#### Added -- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001790" +- Class: [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) -- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt." +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) SubClassOf [has_functional_parent](http://purl.obolibrary.org/obo/chebi#has_functional_parent) some [carbohydrate](http://purl.obolibrary.org/obo/CHEBI_16646) -- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [deprecated](http://www.w3.org/2002/07/owl#deprecated) true +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) SubClassOf [N-glycosyl compound](http://purl.obolibrary.org/obo/CHEBI_21731) -- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/obophenotype/uberon/issues/2867"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) SubClassOf [oxolanes](http://purl.obolibrary.org/obo/CHEBI_26912) -- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [label](http://www.w3.org/2000/01/rdf-schema#label) "obsolete insect dorsal histoblast nest abdominal" +- [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) SubClassOf [nucleobase-containing molecular entity](http://purl.obolibrary.org/obo/CHEBI_61120) -### obsolete insect histoblast `http://purl.obolibrary.org/obo/UBERON_6001789` -#### Removed -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A progenitor of the adult external abdomen." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:DOS" +### nucleoside 5'-diphosphate `http://purl.obolibrary.org/obo/CHEBI_16862` - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBC:gg" +#### Added +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:7652" -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [label](http://www.w3.org/2000/01/rdf-schema#label) "insect histoblast" +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "O[C@H]1[C@H]([*])O[C@H](COP(O)(=O)OP(O)(O)=O)[C@H]1O" -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [late embryo](http://purl.obolibrary.org/obo/UBERON_0000323) +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:25606" -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) SubClassOf [insect embryonic/larval imaginal precursor](http://purl.obolibrary.org/obo/UBERON_6001760) +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleoside diphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) SubClassOf [embryonic structure](http://purl.obolibrary.org/obo/UBERON_0002050) +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "292.98274" -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) SubClassOf [develops from](http://purl.obolibrary.org/obo/RO_0002202) some [insect abdominal histoblast primordium](http://purl.obolibrary.org/obo/UBERON_6016022) +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -#### Added -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [term replaced by](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000373" +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside 5'-diphosphate" -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [deprecated](http://www.w3.org/2002/07/owl#deprecated) true +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Nucleoside diphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Obsoleted as this represents a cell type and therefore belongs to CL." +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13662" -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [label](http://www.w3.org/2000/01/rdf-schema#label) "obsolete insect histoblast" +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13401" -- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/obophenotype/uberon/issues/2867"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [mass](http://purl.obolibrary.org/obo/chebi/mass) "293.08240" +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:16862" -### obsolete insect posterior dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001809` -#### Removed -- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [label](http://www.w3.org/2000/01/rdf-schema#label) "insect posterior dorsal histoblast nest abdominal" +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00454" -- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) SubClassOf [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:14675" -#### Added -- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001790" +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/obophenotype/uberon/issues/2867"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:7428" -- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt." +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "NDP" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [deprecated](http://www.w3.org/2002/07/owl#deprecated) true +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H11O10P2R" -- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [label](http://www.w3.org/2000/01/rdf-schema#label) "obsolete insect posterior dorsal histoblast nest abdominal" +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- Class: [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) -### occipital bone `http://purl.obolibrary.org/obo/UBERON_0001676` +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [mouse metabolite](http://purl.obolibrary.org/obo/CHEBI_75771) -#### Added -- [occipital bone](http://purl.obolibrary.org/obo/UBERON_0001676) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) SubClassOf [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) -- [occipital bone](http://purl.obolibrary.org/obo/UBERON_0001676) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) -### occipitofrontalis muscle `http://purl.obolibrary.org/obo/UBERON_0010946` +### nucleoside 5'-diphosphate(3-) `http://purl.obolibrary.org/obo/CHEBI_57930` #### Added -- [occipitofrontalis muscle](http://purl.obolibrary.org/obo/UBERON_0010946) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H8O10P2R" -- [occipitofrontalis muscle](http://purl.obolibrary.org/obo/UBERON_0010946) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [charge](http://purl.obolibrary.org/obo/chebi/charge) "-3" +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "a ribonucleoside 5'-diphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -### odontoid process of cervical vertebra 2 `http://purl.obolibrary.org/obo/UBERON_0004096` +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [mass](http://purl.obolibrary.org/obo/chebi/mass) "290.059" -#### Added -- [odontoid process of cervical vertebra 2](http://purl.obolibrary.org/obo/UBERON_0004096) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "[C@H]1([C@H]([C@@H](O)[C@@H](O1)*)O)COP(OP([O-])(=O)[O-])(=O)[O-]" -- [odontoid process of cervical vertebra 2](http://purl.obolibrary.org/obo/UBERON_0004096) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "NDP(3-)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside 5'-diphosphate(3-)" -### olfactory bulb interneuron `http://purl.obolibrary.org/obo/CL_1001434` -#### Removed -- [olfactory bulb interneuron](http://purl.obolibrary.org/obo/CL_1001434) SubClassOf [neuron of the forebrain](http://purl.obolibrary.org/obo/CL_0012001) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "289.95927" -#### Added -- [olfactory bulb interneuron](http://purl.obolibrary.org/obo/CL_1001434) SubClassOf [ectoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004121) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [olfactory bulb interneuron](http://purl.obolibrary.org/obo/CL_1001434) SubClassOf [develops from](http://purl.obolibrary.org/obo/RO_0002202) some [neuroblast (sensu Vertebrata)](http://purl.obolibrary.org/obo/CL_0000031) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Trianion of nucleoside diphosphate arising from deprotonation of all three free OH groups of the diphosphate; major species at pH 7.3." +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside diphosphate(3-)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### olfactory bulb interneuron development `http://purl.obolibrary.org/obo/GO_0021891` -#### Removed -- [olfactory bulb interneuron development](http://purl.obolibrary.org/obo/GO_0021891) SubClassOf [forebrain neuron development](http://purl.obolibrary.org/obo/GO_0021884) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -#### Added -- [olfactory bulb interneuron development](http://purl.obolibrary.org/obo/GO_0021891) SubClassOf [central nervous system neuron development](http://purl.obolibrary.org/obo/GO_0021954) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "NDP trianion" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleoside diphosphate trianion" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### olfactory bulb interneuron differentiation `http://purl.obolibrary.org/obo/GO_0021889` -#### Removed -- [olfactory bulb interneuron differentiation](http://purl.obolibrary.org/obo/GO_0021889) SubClassOf [forebrain neuron differentiation](http://purl.obolibrary.org/obo/GO_0021879) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:57930" -#### Added -- [olfactory bulb interneuron differentiation](http://purl.obolibrary.org/obo/GO_0021889) SubClassOf [central nervous system neuron differentiation](http://purl.obolibrary.org/obo/GO_0021953) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside diphosphate trianion" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- Class: [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) -### olfactory epithelial cell `http://purl.obolibrary.org/obo/CL_0002167` +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) -#### Added -- [olfactory epithelial cell](http://purl.obolibrary.org/obo/CL_0002167) SubClassOf [chemoreceptor cell](http://purl.obolibrary.org/obo/CL_0000206) +- [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) SubClassOf [organophosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_58945) -### oligodendrocyte `http://purl.obolibrary.org/obo/CL_0000128` +### nucleoside 5'-phosphate `http://purl.obolibrary.org/obo/CHEBI_16701` #### Added -- [oligodendrocyte](http://purl.obolibrary.org/obo/CL_0000128) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [oligodendrocyte](http://purl.obolibrary.org/obo/CL_0000128) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Nucleoside 5'-phosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H9O6PR2" -### oligodendrocyte precursor cell `http://purl.obolibrary.org/obo/CL_0002453` +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside 5'-phosphate" -#### Added -- [oligodendrocyte precursor cell](http://purl.obolibrary.org/obo/CL_0002453) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleoside 5'-phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [oligodendrocyte precursor cell](http://purl.obolibrary.org/obo/CL_0002453) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:14674" +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [mass](http://purl.obolibrary.org/obo/chebi/mass) "196.09510" -### omohyoid muscle `http://purl.obolibrary.org/obo/UBERON_0001108` +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -#### Added -- [omohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001108) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [omohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001108) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:16701" +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:25603" -### oogonial cell `http://purl.obolibrary.org/obo/CL_0000024` +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "196.01367" -#### Added -- [oogonial cell](http://purl.obolibrary.org/obo/CL_0000024) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:7650" +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ribosyl or deoxyribosyl derivative of a pyrimidine or purine base in which C-5 of the ribose ring is mono-, di-, tri- or tetra-phosphorylated." -### open tracheal system tracheocyte `http://purl.obolibrary.org/obo/CL_0008026` +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "O[C@H]1[C@@H]([*])[C@H]([*])O[C@@H]1COP(O)(O)=O" -#### Added -- [open tracheal system tracheocyte](http://purl.obolibrary.org/obo/CL_0008026) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00005038" +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C01117" +- Class: [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) -### optic disc `http://purl.obolibrary.org/obo/UBERON_0001783` +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) + +- [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) SubClassOf [mononucleotide](http://purl.obolibrary.org/obo/CHEBI_29075) + + +### nucleoside 5'-phosphate dianion `http://purl.obolibrary.org/obo/CHEBI_57867` #### Added -- [optic disc](http://purl.obolibrary.org/obo/UBERON_0001783) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "O[C@H]1[C@@H]([*])[C@H]([*])O[C@@H]1COP([O-])([O-])=O" -- [optic disc](http://purl.obolibrary.org/obo/UBERON_0001783) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [mass](http://purl.obolibrary.org/obo/chebi/mass) "194.07920" +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside 5'-phosphate dianion" -### orbicularis oculi muscle `http://purl.obolibrary.org/obo/UBERON_0001578` +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [orbicularis oculi muscle](http://purl.obolibrary.org/obo/UBERON_0001578) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [orbicularis oculi muscle](http://purl.obolibrary.org/obo/UBERON_0001578) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [charge](http://purl.obolibrary.org/obo/chebi/charge) "-2" +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleoside 5'-phosphate dianions" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### orbicularis oris muscle `http://purl.obolibrary.org/obo/UBERON_0010933` +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The conjugate base of a nucleoside 5'-phosphate." -#### Added -- [orbicularis oris muscle](http://purl.obolibrary.org/obo/UBERON_0010933) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H7O6PR2" -- [orbicularis oris muscle](http://purl.obolibrary.org/obo/UBERON_0010933) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "193.99802" +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:57867" -### ossicle `http://purl.obolibrary.org/obo/UBERON_0010911` +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "a nucleoside 5'-phosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -#### Added -- [ossicle](http://purl.obolibrary.org/obo/UBERON_0010911) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) -- [ossicle](http://purl.obolibrary.org/obo/UBERON_0010911) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) SubClassOf [organophosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_58945) +- [nucleoside 5'-phosphate dianion](http://purl.obolibrary.org/obo/CHEBI_57867) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) -### osteoblast `http://purl.obolibrary.org/obo/CL_0000062` -#### Removed -- [osteoblast](http://purl.obolibrary.org/obo/CL_0000062) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [osteoblast](http://purl.obolibrary.org/obo/CL_0000062) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### nucleoside 5'-triphoshate `http://purl.obolibrary.org/obo/CHEBI_17326` +#### Added +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside 5'-triphoshate" +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Nucleoside triphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -### osteoclast `http://purl.obolibrary.org/obo/CL_0000092` -#### Removed -- [osteoclast](http://purl.obolibrary.org/obo/CL_0000092) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H12O13P3R" -- [osteoclast](http://purl.obolibrary.org/obo/CL_0000092) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "[C@H]1([C@H]([C@@H](O)[C@@H](O1)*)O)COP(OP(OP(=O)(O)O)(=O)O)(=O)O" +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [mass](http://purl.obolibrary.org/obo/chebi/mass) "373.063" +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleoside triphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### osteocyte `http://purl.obolibrary.org/obo/CL_0000137` -#### Removed -- [osteocyte](http://purl.obolibrary.org/obo/CL_0000137) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:7655" -- [osteocyte](http://purl.obolibrary.org/obo/CL_0000137) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "NTP" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:17326" -### pair of lungs `http://purl.obolibrary.org/obo/UBERON_0000170` -#### Removed -- [pair of lungs](http://purl.obolibrary.org/obo/UBERON_0000170) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "372.94908" -- [pair of lungs](http://purl.obolibrary.org/obo/UBERON_0000170) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:7442" -### palatal muscle `http://purl.obolibrary.org/obo/UBERON_0003682` +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13411" -#### Added -- [palatal muscle](http://purl.obolibrary.org/obo/UBERON_0003682) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00201" -- [palatal muscle](http://purl.obolibrary.org/obo/UBERON_0003682) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:14677" +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:25610" -### palatine bone `http://purl.obolibrary.org/obo/UBERON_0001682` +- Class: [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) -#### Added -- [palatine bone](http://purl.obolibrary.org/obo/UBERON_0001682) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) -- [palatine bone](http://purl.obolibrary.org/obo/UBERON_0001682) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [mouse metabolite](http://purl.obolibrary.org/obo/CHEBI_75771) +- [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) SubClassOf [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) -### palatine process of maxilla `http://purl.obolibrary.org/obo/UBERON_0005871` + +### nucleoside 5'-triphoshate(3-) `http://purl.obolibrary.org/obo/CHEBI_58104` #### Added -- [palatine process of maxilla](http://purl.obolibrary.org/obo/UBERON_0005871) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [palatine process of maxilla](http://purl.obolibrary.org/obo/UBERON_0005871) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [mass](http://purl.obolibrary.org/obo/chebi/mass) "370.039" +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### palatoglossus muscle `http://purl.obolibrary.org/obo/UBERON_0001574` +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [charge](http://purl.obolibrary.org/obo/chebi/charge) "-3" -#### Added -- [palatoglossus muscle](http://purl.obolibrary.org/obo/UBERON_0001574) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "NTP trianion" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [palatoglossus muscle](http://purl.obolibrary.org/obo/UBERON_0001574) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside triphosphate trianion" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside triphosphate(3-)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### palatopharyngeus muscle `http://purl.obolibrary.org/obo/UBERON_0010234` +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "369.92560" -#### Added -- [palatopharyngeus muscle](http://purl.obolibrary.org/obo/UBERON_0010234) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:58104" -- [palatopharyngeus muscle](http://purl.obolibrary.org/obo/UBERON_0010234) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleoside triphosphate trianion" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Trianion of nucleoside triphosphate arising from deprotonation of three of the four free triphosphate OH groups." -### palmaris brevis `http://purl.obolibrary.org/obo/UBERON_0036172` +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "NTP(3-)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -#### Added -- [palmaris brevis](http://purl.obolibrary.org/obo/UBERON_0036172) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "[C@H]1([C@H]([C@@H](O)[C@@H](O1)*)O)COP(OP(OP(=O)([O-])O)(=O)[O-])(=O)[O-]" -- [palmaris brevis](http://purl.obolibrary.org/obo/UBERON_0036172) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside 5'-triphoshate(3-)" +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H9O13P3R" -### palmaris longus muscle `http://purl.obolibrary.org/obo/UBERON_0016493` +- Class: [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) -#### Added -- [palmaris longus muscle](http://purl.obolibrary.org/obo/UBERON_0016493) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) SubClassOf [is_conjugate_acid_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of) some [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) -- [palmaris longus muscle](http://purl.obolibrary.org/obo/UBERON_0016493) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) +- [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) SubClassOf [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) -### paraspinal region `http://purl.obolibrary.org/obo/UBERON_8480060` + +### nucleoside 5'-triphoshate(4-) `http://purl.obolibrary.org/obo/CHEBI_61557` #### Added -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "paraspinal" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C129461" +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleoside triphosphate(4-)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "[C@H]1([C@H]([C@@H](O)[C@@H](O1)*)O)COP(OP(OP(=O)([O-])[O-])(=O)[O-])(=O)[O-]" -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480060" +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "NTP(4-)" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "SUBMITTER" -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) [label](http://www.w3.org/2000/01/rdf-schema#label) "paraspinal region" +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ribonucleoside triphosphate oxoanion arising from global deprotonation of the triphosphate groups of any nucleoside triphosphate; major species at pH 7.3." -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) [date](http://purl.org/dc/terms/date) "2023-05-16T06:37:51Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "368.91778" -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The region of the body adjacent to the vertebral column." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C166000" +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [charge](http://purl.obolibrary.org/obo/chebi/charge) "-4" -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleoside 5'-triphosphate tetraanion" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- Class: [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [mass](http://purl.obolibrary.org/obo/chebi/mass) "369.031" -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) SubClassOf [posterior region of body](http://purl.obolibrary.org/obo/UBERON_0000154) +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "NTP tetraanion" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [paraspinal region](http://purl.obolibrary.org/obo/UBERON_8480060) SubClassOf [only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Vertebrata ](http://purl.obolibrary.org/obo/NCBITaxon_7742) +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "a ribonucleoside 5'-triphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -### pectineus muscle `http://purl.obolibrary.org/obo/UBERON_0001382` +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [pectineus muscle](http://purl.obolibrary.org/obo/UBERON_0001382) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:61557" -- [pectineus muscle](http://purl.obolibrary.org/obo/UBERON_0001382) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H8O13P3R" +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside 5'-triphoshate(4-)" -### pectoral girdle bone `http://purl.obolibrary.org/obo/UBERON_0007829` +- Class: [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) -#### Added -- [pectoral girdle bone](http://purl.obolibrary.org/obo/UBERON_0007829) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) SubClassOf [is_conjugate_base_of](http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of) some [nucleoside 5'-triphoshate(3-)](http://purl.obolibrary.org/obo/CHEBI_58104) -- [pectoral girdle bone](http://purl.obolibrary.org/obo/UBERON_0007829) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) SubClassOf [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) -### pectoral muscle `http://purl.obolibrary.org/obo/UBERON_0001495` +### nucleoside binding `http://purl.obolibrary.org/obo/GO_0001882` #### Added -- [pectoral muscle](http://purl.obolibrary.org/obo/UBERON_0001495) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside binding" -- [pectoral muscle](http://purl.obolibrary.org/obo/UBERON_0001495) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0001882" +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -### pectoralis major `http://purl.obolibrary.org/obo/UBERON_0002381` +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_pir](http://purl.obolibrary.org/obo/go#goslim_pir) -#### Added -- [pectoralis major](http://purl.obolibrary.org/obo/UBERON_0002381) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:hjd" -- [pectoralis major](http://purl.obolibrary.org/obo/UBERON_0002381) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838)) -### pectoralis minor `http://purl.obolibrary.org/obo/UBERON_0001100` +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) SubClassOf [carbohydrate derivative binding](http://purl.obolibrary.org/obo/GO_0097367) -#### Added -- [pectoralis minor](http://purl.obolibrary.org/obo/UBERON_0001100) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) + +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) SubClassOf [organic cyclic compound binding](http://purl.obolibrary.org/obo/GO_0097159) -- [pectoralis minor](http://purl.obolibrary.org/obo/UBERON_0001100) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) SubClassOf [small molecule binding](http://purl.obolibrary.org/obo/GO_0036094) +- [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) SubClassOf [heterocyclic compound binding](http://purl.obolibrary.org/obo/GO_1901363) -### pelvic girdle bone/zone `http://purl.obolibrary.org/obo/UBERON_0007830` + +### nucleoside biosynthetic process `http://purl.obolibrary.org/obo/GO_0009163` #### Added -- [pelvic girdle bone/zone](http://purl.obolibrary.org/obo/UBERON_0007830) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside biosynthesis" -- [pelvic girdle bone/zone](http://purl.obolibrary.org/obo/UBERON_0007830) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside formation" +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside biosynthetic process" -### peptidyl-amino acid modification `http://purl.obolibrary.org/obo/GO_0018193` +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:jl" -#### Added -- [peptidyl-amino acid modification](http://purl.obolibrary.org/obo/GO_0018193) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0140512713" +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside synthesis" -### peptidyl-tyrosine modification `http://purl.obolibrary.org/obo/GO_0018212` +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [peptidyl-tyrosine modification](http://purl.obolibrary.org/obo/GO_0018212) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009163" +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside anabolism" -### peptidyl-tyrosine phosphorylation `http://purl.obolibrary.org/obo/GO_0018108` +- Class: [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) -#### Added -- [peptidyl-tyrosine phosphorylation](http://purl.obolibrary.org/obo/GO_0018108) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838)) +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) SubClassOf [nucleobase-containing small molecule biosynthetic process](http://purl.obolibrary.org/obo/GO_0034404) -### pericardial region `http://purl.obolibrary.org/obo/UBERON_8480061` +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) -#### Added -- [pericardial region](http://purl.obolibrary.org/obo/UBERON_8480061) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) SubClassOf [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) -- [pericardial region](http://purl.obolibrary.org/obo/UBERON_8480061) [label](http://www.w3.org/2000/01/rdf-schema#label) "pericardial region" +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) SubClassOf [organonitrogen compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901566) -- [pericardial region](http://purl.obolibrary.org/obo/UBERON_8480061) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) SubClassOf [glycosyl compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901659) -- [pericardial region](http://purl.obolibrary.org/obo/UBERON_8480061) [date](http://purl.org/dc/terms/date) "2023-05-16T06:47:28Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) -- [pericardial region](http://purl.obolibrary.org/obo/UBERON_8480061) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The region of the body adjacent to the pericardium and heart." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-0819-0473" +### nucleoside catabolic process `http://purl.obolibrary.org/obo/GO_0009164` -- [pericardial region](http://purl.obolibrary.org/obo/UBERON_8480061) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480061" +#### Added +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside catabolic process" -- Class: [pericardial region](http://purl.obolibrary.org/obo/UBERON_8480061) +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside catabolism" -- [pericardial region](http://purl.obolibrary.org/obo/UBERON_8480061) SubClassOf [subdivision of trunk](http://purl.obolibrary.org/obo/UBERON_0009569) +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside degradation" +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:jl" -### perichondrial fibroblast `http://purl.obolibrary.org/obo/CL_4033025` +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside breakdown" -#### Added -- [perichondrial fibroblast](http://purl.obolibrary.org/obo/CL_4033025) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [perichondrial fibroblast](http://purl.obolibrary.org/obo/CL_4033025) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009164" +- Class: [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) -### perigastric lymph node `http://purl.obolibrary.org/obo/UBERON_8480059` +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838)) -#### Added -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "peri-gastric lymph node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28447049" +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) SubClassOf [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [curator notes](http://purl.obolibrary.org/obo/IAO_0000232) "The perigastric lymph nodes include at least the right paracardial lymph nodes, left paracardial lymph nodes, lesser curvature lymph nodes, greater curvature lymph nodes, suprapyloric lymph nodes and infrapyloric lymph nodes. PMID:26973384" +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) SubClassOf [organonitrogen compound catabolic process](http://purl.obolibrary.org/obo/GO_1901565) -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "peri-gastric node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28447049" +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) SubClassOf [nucleobase-containing small molecule catabolic process](http://purl.obolibrary.org/obo/GO_0034656) -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "perigastric node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9752878" +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) SubClassOf [glycosyl compound catabolic process](http://purl.obolibrary.org/obo/GO_1901658) -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [date](http://purl.org/dc/terms/date) "2023-05-11T12:28:12Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "paragastric lymph node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:3172586" -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480059" +### nucleoside diphosphate biosynthetic process `http://purl.obolibrary.org/obo/GO_0009133` -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [label](http://www.w3.org/2000/01/rdf-schema#label) "perigastric lymph node" +#### Added +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Lymph node located in the perigastric region." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-0819-0473" +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside diphosphate synthesis" -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside diphosphate anabolism" -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside diphosphate biosynthetic process" -- Class: [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside diphosphate biosynthesis" -- [perigastric lymph node](http://purl.obolibrary.org/obo/UBERON_8480059) SubClassOf [abdominal lymph node](http://purl.obolibrary.org/obo/UBERON_0002507) +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009133" +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside diphosphate formation" -### perineal muscle `http://purl.obolibrary.org/obo/UBERON_0002379` +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -#### Added -- [perineal muscle](http://purl.obolibrary.org/obo/UBERON_0002379) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -- [perineal muscle](http://purl.obolibrary.org/obo/UBERON_0002379) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930)) -### pes bone `http://purl.obolibrary.org/obo/UBERON_0005899` +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) SubClassOf [organic substance biosynthetic process](http://purl.obolibrary.org/obo/GO_1901576) -#### Added -- [pes bone](http://purl.obolibrary.org/obo/UBERON_0005899) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) SubClassOf [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) -- [pes bone](http://purl.obolibrary.org/obo/UBERON_0005899) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009133) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) -### phagocyte `http://purl.obolibrary.org/obo/CL_0000234` +### nucleoside diphosphate catabolic process `http://purl.obolibrary.org/obo/GO_0009134` #### Added -- [phagocyte](http://purl.obolibrary.org/obo/CL_0000234) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside diphosphate catabolism" +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside diphosphate degradation" -### phagocyte (sensu Nematoda and Protostomia) `http://purl.obolibrary.org/obo/CL_0000519` -#### Removed -- [phagocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000519) [never in taxon](http://purl.obolibrary.org/obo/RO_0002161) [Deuterostomia](http://purl.obolibrary.org/obo/NCBITaxon_33511) - -- [phagocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000519) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A phagocyte from organisms in the Nematoda or Protostomia clades." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [phagocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000519) [label](http://www.w3.org/2000/01/rdf-schema#label) "phagocyte (sensu Nematoda and Protostomia)" +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside diphosphate breakdown" -- Class: [phagocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000519) +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [phagocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000519) DisjointWith [in taxon](http://purl.obolibrary.org/obo/RO_0002162) some [Deuterostomia](http://purl.obolibrary.org/obo/NCBITaxon_33511) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -- [phagocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000519) SubClassOf [in taxon](http://purl.obolibrary.org/obo/RO_0002162) some (not ([Deuterostomia](http://purl.obolibrary.org/obo/NCBITaxon_33511))) +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside diphosphate catabolic process" -- [phagocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000519) SubClassOf [phagocyte](http://purl.obolibrary.org/obo/CL_0000234) +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009134" +- Class: [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930)) -### piriformis muscle `http://purl.obolibrary.org/obo/UBERON_0008529` +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) SubClassOf [organic substance catabolic process](http://purl.obolibrary.org/obo/GO_1901575) -#### Added -- [piriformis muscle](http://purl.obolibrary.org/obo/UBERON_0008529) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) -- [piriformis muscle](http://purl.obolibrary.org/obo/UBERON_0008529) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009134) SubClassOf [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) -### pisiform `http://purl.obolibrary.org/obo/UBERON_0001429` +### nucleoside diphosphate metabolic process `http://purl.obolibrary.org/obo/GO_0009132` #### Added -- [pisiform](http://purl.obolibrary.org/obo/UBERON_0001429) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [pisiform](http://purl.obolibrary.org/obo/UBERON_0001429) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009132" +- [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside diphosphate metabolic process" -### pituitary gland cell `http://purl.obolibrary.org/obo/CL_2000004` -#### Removed -- [pituitary gland cell](http://purl.obolibrary.org/obo/CL_2000004) SubClassOf [native cell](http://purl.obolibrary.org/obo/CL_0000003) +- [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside diphosphate metabolism" -#### Added -- [pituitary gland cell](http://purl.obolibrary.org/obo/CL_2000004) SubClassOf [neural cell](http://purl.obolibrary.org/obo/CL_0002319) +- [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -### plasma cell `http://purl.obolibrary.org/obo/CL_0000786` +- Class: [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) -#### Added -- [plasma cell](http://purl.obolibrary.org/obo/CL_0000786) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930)) +- [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) SubClassOf [phosphorus metabolic process](http://purl.obolibrary.org/obo/GO_0006793) -### platelet `http://purl.obolibrary.org/obo/CL_0000233` +- [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) -#### Added -- [platelet](http://purl.obolibrary.org/obo/CL_0000233) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009132) SubClassOf [organic substance metabolic process](http://purl.obolibrary.org/obo/GO_0071704) -### platysma `http://purl.obolibrary.org/obo/UBERON_0005467` +### nucleoside metabolic process `http://purl.obolibrary.org/obo/GO_0009116` #### Added -- [platysma](http://purl.obolibrary.org/obo/UBERON_0005467) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside metabolism" -- [platysma](http://purl.obolibrary.org/obo/UBERON_0005467) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009116" -### popliteus muscle `http://purl.obolibrary.org/obo/UBERON_0001391` +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_pir](http://purl.obolibrary.org/obo/go#goslim_pir) -#### Added -- [popliteus muscle](http://purl.obolibrary.org/obo/UBERON_0001391) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside metabolic process" -- [popliteus muscle](http://purl.obolibrary.org/obo/UBERON_0001391) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ma" +- Class: [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) -### positive regulation of ATP-dependent activity `http://purl.obolibrary.org/obo/GO_0032781` +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838)) -#### Added -- [positive regulation of ATP-dependent activity](http://purl.obolibrary.org/obo/GO_0032781) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) SubClassOf [nucleobase-containing small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0055086) -### positive regulation of DNA binding `http://purl.obolibrary.org/obo/GO_0043388` +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) SubClassOf [glycosyl compound metabolic process](http://purl.obolibrary.org/obo/GO_1901657) -#### Added -- [positive regulation of DNA binding](http://purl.obolibrary.org/obo/GO_0043388) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) SubClassOf [organonitrogen compound metabolic process](http://purl.obolibrary.org/obo/GO_1901564) -### positive regulation of RNA binding `http://purl.obolibrary.org/obo/GO_1905216` +### nucleoside phosphate `http://purl.obolibrary.org/obo/CHEBI_25608` #### Added -- [positive regulation of RNA binding](http://purl.obolibrary.org/obo/GO_1905216) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Nucleoside monophosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:25608" -### positive regulation of apolipoprotein binding `http://purl.obolibrary.org/obo/GO_2000658` +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside phosphate" -#### Added -- [positive regulation of apolipoprotein binding](http://purl.obolibrary.org/obo/GO_2000658) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "NMP" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -### positive regulation of binding `http://purl.obolibrary.org/obo/GO_0051099` +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C01329" -#### Added -- [positive regulation of binding](http://purl.obolibrary.org/obo/GO_0051099) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleoside phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### positive regulation of calcium ion binding `http://purl.obolibrary.org/obo/GO_1901878` +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A nucleobase-containing molecular entity that is a nucleoside in which one or more of the sugar hydroxy groups has been converted into a mono- or poly-phosphate. The term includes both nucleotides and non-nucleotide nucleoside phosphates." -#### Added -- [positive regulation of calcium ion binding](http://purl.obolibrary.org/obo/GO_1901878) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- Class: [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) SubClassOf [organic phosphate](http://purl.obolibrary.org/obo/CHEBI_25703) -### positive regulation of calcium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1901021` +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) SubClassOf [has_functional_parent](http://purl.obolibrary.org/obo/chebi#has_functional_parent) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) -#### Added -- [positive regulation of calcium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901021) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) SubClassOf [phosphoric ester](http://purl.obolibrary.org/obo/CHEBI_37734) +- [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) SubClassOf [nucleobase-containing molecular entity](http://purl.obolibrary.org/obo/CHEBI_61120) -### positive regulation of catalytic activity `http://purl.obolibrary.org/obo/GO_0043085` + +### nucleoside phosphate binding `http://purl.obolibrary.org/obo/GO_1901265` #### Added -- [positive regulation of catalytic activity](http://purl.obolibrary.org/obo/GO_0043085) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside phosphate binding" -### positive regulation of cell death `http://purl.obolibrary.org/obo/GO_0010942` -#### Removed -- [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-08-17T12:59:58Z" -- [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0010942" +- [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1901265" -- [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that increases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" +- [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to nucleoside phosphate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tb" +- [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" -- [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of cell death" +- Class: [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) -- Class: [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) +- [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608)) -- [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [cell death](http://purl.obolibrary.org/obo/GO_0008219)) +- [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) SubClassOf [organic cyclic compound binding](http://purl.obolibrary.org/obo/GO_0097159) -- [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) SubClassOf [positive regulation of cellular process](http://purl.obolibrary.org/obo/GO_0048522) +- [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) -- [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) SubClassOf [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) +- [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) SubClassOf [heterocyclic compound binding](http://purl.obolibrary.org/obo/GO_1901363) -- [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [cell death](http://purl.obolibrary.org/obo/GO_0008219) +### nucleoside phosphate biosynthetic process `http://purl.obolibrary.org/obo/GO_1901293` +#### Added +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside phosphate biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### positive regulation of chromatin binding `http://purl.obolibrary.org/obo/GO_0035563` +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside phosphate biosynthetic process" -#### Added -- [positive regulation of chromatin binding](http://purl.obolibrary.org/obo/GO_0035563) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside phosphate formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1901293" -### positive regulation of collagen binding `http://purl.obolibrary.org/obo/GO_0033343` +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside phosphate anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [positive regulation of collagen binding](http://purl.obolibrary.org/obo/GO_0033343) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside phosphate synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### positive regulation of deoxyribonuclease activity `http://purl.obolibrary.org/obo/GO_0032077` +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" -#### Added -- [positive regulation of deoxyribonuclease activity](http://purl.obolibrary.org/obo/GO_0032077) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-08-20T12:33:45Z" +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a nucleoside phosphate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### positive regulation of epinephrine secretion `http://purl.obolibrary.org/obo/GO_0032812` -#### Removed -- [positive regulation of epinephrine secretion](http://purl.obolibrary.org/obo/GO_0032812) SubClassOf [positive regulation of catecholamine secretion](http://purl.obolibrary.org/obo/GO_0033605) +- Class: [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) -#### Added -- [positive regulation of epinephrine secretion](http://purl.obolibrary.org/obo/GO_0032812) SubClassOf [positive regulation of secretion](http://purl.obolibrary.org/obo/GO_0051047) +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608)) +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) SubClassOf [nucleobase-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0034654) -### positive regulation of euchromatin binding `http://purl.obolibrary.org/obo/GO_1904795` +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) -#### Added -- [positive regulation of euchromatin binding](http://purl.obolibrary.org/obo/GO_1904795) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) SubClassOf [organophosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0090407) +- [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) SubClassOf [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) -### positive regulation of hepatic stellate cell activation `http://purl.obolibrary.org/obo/GO_2000491` + +### nucleoside phosphate catabolic process `http://purl.obolibrary.org/obo/GO_1901292` #### Added -- [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of hepatic stellate cell activation." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" + +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside phosphate catabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside phosphate degradation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-08-20T12:33:25Z" + +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside phosphate catabolic process" -- [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of hepatic stellate cell activation" +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1901292" -- [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:2000491" +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a nucleoside phosphate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-03-14T03:49:48Z" +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside phosphate breakdown" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" +- Class: [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) -- Class: [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608)) -- [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733)) +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) SubClassOf [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) -- [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) SubClassOf [organophosphate catabolic process](http://purl.obolibrary.org/obo/GO_0046434) -- [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) SubClassOf [positive regulation of cell activation](http://purl.obolibrary.org/obo/GO_0050867) +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) SubClassOf [nucleobase-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0034655) -- [positive regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000491) SubClassOf [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) +- [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) -### positive regulation of hepatic stellate cell migration `http://purl.obolibrary.org/obo/GO_0061870` +### nucleoside phosphate metabolic process `http://purl.obolibrary.org/obo/GO_0006753` #### Added -- [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of hepatic stellate cell migration" +- [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving any phosphorylated nucleoside." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2017-05-01T13:17:23Z" +- [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside phosphate metabolic process" -- [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "dph" +- [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006753" -- [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0061870" +- [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside phosphate metabolism" -- [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that increases the frequency, rate or extent of hepatic stellate cell migration." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24204762" +- Class: [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) -- Class: [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) +- [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608)) -- [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868)) +- [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) SubClassOf [nucleobase-containing small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0055086) -- [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) +- [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) SubClassOf [phosphate-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0006796) -- [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) SubClassOf [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) +- [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) -- [positive regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061870) SubClassOf [positive regulation of fibroblast migration](http://purl.obolibrary.org/obo/GO_0010763) +- [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) SubClassOf [organophosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019637) -### positive regulation of hepatic stellate cell proliferation `http://purl.obolibrary.org/obo/GO_1904899` +### nucleoside transmembrane transport `http://purl.obolibrary.org/obo/GO_1901642` #### Added -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of Ito cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of Ito cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-11-16T13:32:01Z" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of hepatic stellate cell proliferation" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of nucleoside across a membrane." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of hepatic perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:pr" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of hepatic perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Note that this term is not intended for use in annotating lateral movement within membranes." -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "pr" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of hepatic perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside membrane transport" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of hepatic stellate cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside transmembrane transport" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1901642" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of hepatic stellate cell proliferation" +- Class: [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of hepatic perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838)) -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of hepatic perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) SubClassOf [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of hepatic stellate cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2016-01-14T15:57:13Z" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) SubClassOf [results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020) -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) SubClassOf [transmembrane transport](http://purl.obolibrary.org/obo/GO_0055085) -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of Ito cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "sl" +### nucleoside transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0005337` -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of Ito cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +#### Added +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-109527" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Equilibrative transport (import) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 2" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of Ito cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-727768" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Equilibrative transport (export) of adenosine and biogenic amines by solute carrier family 29 (nucleoside transporters), member 4" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of hepatic stellate cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-9755035" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "SLC29A1 transports RBV from cytosol to extracellular region" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1904899" +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-109536" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Equilibrative transport (import) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 1" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-9754929" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "SLC29A3 transports RBV,RBV-TP from cytosol to mitochondrial matrix" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-109534" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Equilibrative transport (export) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 1" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of hepatic stellate cell proliferation." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-727749" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "SLC29A3 transports nucleosides from lysosomal lumen to cytosol" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:15358192" +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside transmembrane transporter activity" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000058" +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0005337" -- Class: [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922)) +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-9755015" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "SLC29A1 transports RBV from extracellular region to cytosol" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) SubClassOf [positive regulation of fibroblast proliferation](http://purl.obolibrary.org/obo/GO_0048146) +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "intracellular nucleoside transmembrane transporter activity" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-109529" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Equilibrative transport (export) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 2" -- [positive regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904899) SubClassOf [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-727767" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "SLC29A3 transports nucleosides from cytosol to lysosomal lumen" +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-9751024" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "SLC29A1,2 transport 6MP from extracellular region to cytosol" -### positive regulation of hydrolase activity `http://purl.obolibrary.org/obo/GO_0051345` +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-727740" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Equilibrative transport (import) of adenosine and biogenic amines by solute carrier family 29 (nucleoside transporters), member 4" -#### Added -- [positive regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051345) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-5628807" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Defective SLC29A3 does not transport nucleosides from lysosomal lumen to cytosol" +- Class: [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) -### positive regulation of ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0032414` +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838)) -#### Added -- [positive regulation of ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0032414) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) SubClassOf [carbohydrate derivative transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901505) +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) + - [source](http://www.geneontology.org/formats/oboInOwl#http://purl.org/dc/terms/source) "GO_REF:0000090" -### positive regulation of iron ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1904256` +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) -#### Added -- [positive regulation of iron ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1904256) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) SubClassOf [nucleobase-containing compound transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015932) -### positive regulation of kinase activity `http://purl.obolibrary.org/obo/GO_0033674` +### nucleoside transport `http://purl.obolibrary.org/obo/GO_0015858` #### Added -- [positive regulation of kinase activity](http://purl.obolibrary.org/obo/GO_0033674) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) - +- [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015858" -### positive regulation of ligase activity `http://purl.obolibrary.org/obo/GO_0051351` +- [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" -#### Added -- [positive regulation of ligase activity](http://purl.obolibrary.org/obo/GO_0051351) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside transport" +- [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### positive regulation of lipid binding `http://purl.obolibrary.org/obo/GO_1900132` +- Class: [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) -#### Added -- [positive regulation of lipid binding](http://purl.obolibrary.org/obo/GO_1900132) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838)) +- [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) SubClassOf [carbohydrate derivative transport](http://purl.obolibrary.org/obo/GO_1901264) -### positive regulation of lipid transporter activity `http://purl.obolibrary.org/obo/GO_0110113` +- [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) -#### Added -- [positive regulation of lipid transporter activity](http://purl.obolibrary.org/obo/GO_0110113) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) SubClassOf [nucleobase-containing compound transport](http://purl.obolibrary.org/obo/GO_0015931) -### positive regulation of microtubule binding `http://purl.obolibrary.org/obo/GO_1904528` +### nucleoside triphosphate biosynthetic process `http://purl.obolibrary.org/obo/GO_0009142` #### Added -- [positive regulation of microtubule binding](http://purl.obolibrary.org/obo/GO_1904528) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009142" +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -### positive regulation of molecular function `http://purl.obolibrary.org/obo/GO_0044093` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -#### Added -- [positive regulation of molecular function](http://purl.obolibrary.org/obo/GO_0044093) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside triphosphate biosynthesis" +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### positive regulation of neuron death `http://purl.obolibrary.org/obo/GO_1901216` -#### Removed -- [positive regulation of neuron death](http://purl.obolibrary.org/obo/GO_1901216) SubClassOf [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside triphosphate biosynthetic process" -#### Added -- [positive regulation of neuron death](http://purl.obolibrary.org/obo/GO_1901216) SubClassOf [positive regulation of cellular process](http://purl.obolibrary.org/obo/GO_0048522) +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside triphosphate synthesis" +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside triphosphate anabolism" -### positive regulation of nuclease activity `http://purl.obolibrary.org/obo/GO_0032075` +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside triphosphate formation" -#### Added -- [positive regulation of nuclease activity](http://purl.obolibrary.org/obo/GO_0032075) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- Class: [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557)) -### positive regulation of peptidase activity `http://purl.obolibrary.org/obo/GO_0010952` +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) SubClassOf [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) -#### Added -- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) SubClassOf [organic substance biosynthetic process](http://purl.obolibrary.org/obo/GO_1901576) +- [nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009142) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) -### positive regulation of programmed cell death `http://purl.obolibrary.org/obo/GO_0043068` -#### Removed -- [positive regulation of programmed cell death](http://purl.obolibrary.org/obo/GO_0043068) SubClassOf [positive regulation of cell death](http://purl.obolibrary.org/obo/GO_0010942) + +### nucleoside triphosphate catabolic process `http://purl.obolibrary.org/obo/GO_0009143` #### Added -- [positive regulation of programmed cell death](http://purl.obolibrary.org/obo/GO_0043068) SubClassOf [positive regulation of cellular process](http://purl.obolibrary.org/obo/GO_0048522) +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside triphosphate breakdown" +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside triphosphate degradation" -### positive regulation of protein binding `http://purl.obolibrary.org/obo/GO_0032092` +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009143" -#### Added -- [positive regulation of protein binding](http://purl.obolibrary.org/obo/GO_0032092) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside triphosphate catabolic process" +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -### positive regulation of protein kinase activity `http://purl.obolibrary.org/obo/GO_0045860` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -#### Added -- [positive regulation of protein kinase activity](http://purl.obolibrary.org/obo/GO_0045860) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside triphosphate catabolism" -### positive regulation of protein serine/threonine kinase activity `http://purl.obolibrary.org/obo/GO_0071902` +- Class: [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) -#### Added -- [positive regulation of protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0071902) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557)) +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) SubClassOf [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) -### positive regulation of protein tyrosine kinase activity `http://purl.obolibrary.org/obo/GO_0061098` +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) -#### Added -- [positive regulation of protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0061098) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009143) SubClassOf [organic substance catabolic process](http://purl.obolibrary.org/obo/GO_1901575) -### positive regulation of receptor binding `http://purl.obolibrary.org/obo/GO_1900122` +### nucleoside triphosphate metabolic process `http://purl.obolibrary.org/obo/GO_0009141` #### Added -- [positive regulation of receptor binding](http://purl.obolibrary.org/obo/GO_1900122) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009141" -### positive regulation of signaling receptor activity `http://purl.obolibrary.org/obo/GO_2000273` +- [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -#### Added -- [positive regulation of signaling receptor activity](http://purl.obolibrary.org/obo/GO_2000273) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" +- [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleoside triphosphate metabolic process" -### positive regulation of sodium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_2000651` +- [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleoside triphosphate metabolism" -#### Added -- [positive regulation of sodium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_2000651) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- Class: [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) +- [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557)) -### positive regulation of transferase activity `http://purl.obolibrary.org/obo/GO_0051347` +- [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) SubClassOf [organic substance metabolic process](http://purl.obolibrary.org/obo/GO_0071704) -#### Added -- [positive regulation of transferase activity](http://purl.obolibrary.org/obo/GO_0051347) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) +- [nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009141) SubClassOf [phosphorus metabolic process](http://purl.obolibrary.org/obo/GO_0006793) -### positive regulation of transporter activity `http://purl.obolibrary.org/obo/GO_0032411` + +### nucleotide `http://purl.obolibrary.org/obo/CHEBI_36976` #### Added -- [positive regulation of transporter activity](http://purl.obolibrary.org/obo/GO_0032411) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:36976" +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Nucleotide" -### posterior crico-arytenoid `http://purl.obolibrary.org/obo/UBERON_0008572` +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13215" -#### Added -- [posterior crico-arytenoid](http://purl.obolibrary.org/obo/UBERON_0008572) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleotide" -- [posterior crico-arytenoid](http://purl.obolibrary.org/obo/UBERON_0008572) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:7656" +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### posterior digastric muscle `http://purl.obolibrary.org/obo/UBERON_0010944` +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13663" -#### Added -- [posterior digastric muscle](http://purl.obolibrary.org/obo/UBERON_0010944) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [posterior digastric muscle](http://purl.obolibrary.org/obo/UBERON_0010944) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Nucleotide" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00215" -### posterior sector of right lobe of liver `http://purl.obolibrary.org/obo/UBERON_8600015` +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "nucleotides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -#### Added -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "liver right lateral lobe" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-6443-9376" +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A nucleotide is a nucleoside phosphate resulting from the condensation of the 3 or 5 hydroxy group of a nucleoside with phosphoric acid." -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The posterior sector of the right lobe of the liver." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30992874" +- Class: [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "right hepatic posterior sector" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30487943" +- [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) SubClassOf [nucleoside phosphate](http://purl.obolibrary.org/obo/CHEBI_25608) -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +### nucleotide binding `http://purl.obolibrary.org/obo/GO_0000166` -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-6443-9376](https://orcid.org/0000-0002-6443-9376) +#### Added +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_pir](http://purl.obolibrary.org/obo/go#goslim_pir) -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) [label](http://www.w3.org/2000/01/rdf-schema#label) "posterior sector of right lobe of liver" +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_plant](http://purl.obolibrary.org/obo/go#goslim_plant) -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "lateral sector of right lobe of liver" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24453062" +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_metagenomics](http://purl.obolibrary.org/obo/go#goslim_metagenomics) -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600015" +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0000166" -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) [date](http://purl.org/dc/terms/date) "2023-05-15T10:46:34Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleotide binding" -- Class: [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) SubClassOf [anatomical entity](http://purl.obolibrary.org/obo/CARO_0000000) +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [posterior sector of right lobe of liver](http://purl.obolibrary.org/obo/UBERON_8600015) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [right lobe of liver](http://purl.obolibrary.org/obo/UBERON_0001114) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198547684" +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_chembl](http://purl.obolibrary.org/obo/go#goslim_chembl) -### preameloblast `http://purl.obolibrary.org/obo/CL_0007000` +- Class: [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) -#### Added -- [preameloblast](http://purl.obolibrary.org/obo/CL_0007000) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976)) +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -### precementoblast `http://purl.obolibrary.org/obo/CL_0007002` +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) SubClassOf [small molecule binding](http://purl.obolibrary.org/obo/GO_0036094) -#### Added -- [precementoblast](http://purl.obolibrary.org/obo/CL_0007002) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) SubClassOf [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) -### precentral gyrus `http://purl.obolibrary.org/obo/UBERON_0002703` -#### Removed -- [precentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002703) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### nucleotide biosynthetic process `http://purl.obolibrary.org/obo/GO_0009165` -- [precentral gyrus](http://purl.obolibrary.org/obo/UBERON_0002703) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009165" +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleotide synthesis" -### prechondroblast `http://purl.obolibrary.org/obo/CL_0007009` +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleotide biosynthetic process" -#### Added -- [prechondroblast](http://purl.obolibrary.org/obo/CL_0007009) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleotide anabolism" +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleotide biosynthesis" -### preodontoblast `http://purl.obolibrary.org/obo/CL_0007003` +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -#### Added -- [preodontoblast](http://purl.obolibrary.org/obo/CL_0007003) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleotide formation" +- Class: [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) -### preosteoblast `http://purl.obolibrary.org/obo/CL_0007010` -#### Removed -- [preosteoblast](http://purl.obolibrary.org/obo/CL_0007010) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976)) -- [preosteoblast](http://purl.obolibrary.org/obo/CL_0007010) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -#### Added -- [preosteoblast](http://purl.obolibrary.org/obo/CL_0007010) SubClassOf [bone cell](http://purl.obolibrary.org/obo/CL_0001035) +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) SubClassOf [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) + +- [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) SubClassOf [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) -### primary bronchiole `http://purl.obolibrary.org/obo/UBERON_0012067` +### nucleotide catabolic process `http://purl.obolibrary.org/obo/GO_0009166` #### Added -- [primary bronchiole](http://purl.obolibrary.org/obo/UBERON_0012067) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleotide breakdown" -- [primary bronchiole](http://purl.obolibrary.org/obo/UBERON_0012067) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009166" +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### primary lymphoid nodule of tonsil `http://purl.obolibrary.org/obo/UBERON_0010423` +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleotide catabolism" -#### Added -- [primary lymphoid nodule of tonsil](http://purl.obolibrary.org/obo/UBERON_0010423) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [primary lymphoid nodule of tonsil](http://purl.obolibrary.org/obo/UBERON_0010423) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleotide catabolic process" +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleotide degradation" -### primary neuron `http://purl.obolibrary.org/obo/CL_0000530` -#### Removed -- [primary neuron](http://purl.obolibrary.org/obo/CL_0000530) [label](http://www.w3.org/2000/01/rdf-schema#label) "primary neuron" +- Class: [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) -- Class: [primary neuron](http://purl.obolibrary.org/obo/CL_0000530) +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976)) -- [primary neuron](http://purl.obolibrary.org/obo/CL_0000530) SubClassOf [neuron](http://purl.obolibrary.org/obo/CL_0000540) +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) SubClassOf [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) +- [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) SubClassOf [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) -### primary sensory neuron `http://purl.obolibrary.org/obo/CL_0000531` -#### Removed -- [primary sensory neuron](http://purl.obolibrary.org/obo/CL_0000531) [label](http://www.w3.org/2000/01/rdf-schema#label) "primary sensory neuron" -- Class: [primary sensory neuron](http://purl.obolibrary.org/obo/CL_0000531) +### nucleotide metabolic process `http://purl.obolibrary.org/obo/GO_0009117` -- [primary sensory neuron](http://purl.obolibrary.org/obo/CL_0000531) EquivalentTo [sensory neuron](http://purl.obolibrary.org/obo/CL_0000101) and [primary neuron](http://purl.obolibrary.org/obo/CL_0000530) +#### Added +- [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_pir](http://purl.obolibrary.org/obo/go#goslim_pir) -- [primary sensory neuron](http://purl.obolibrary.org/obo/CL_0000531) SubClassOf [primary neuron](http://purl.obolibrary.org/obo/CL_0000530) +- [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleotide metabolic process" -- [primary sensory neuron](http://purl.obolibrary.org/obo/CL_0000531) SubClassOf [sensory neuron](http://purl.obolibrary.org/obo/CL_0000101) +- [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009117" +- [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleotide metabolism" +- [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### primordial germ cell `http://purl.obolibrary.org/obo/CL_0000670` +- [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ma" -#### Added -- [primordial germ cell](http://purl.obolibrary.org/obo/CL_0000670) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- Class: [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) +- [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976)) -### proerythroblast `http://purl.obolibrary.org/obo/CL_0000547` +- [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -#### Added -- [proerythroblast](http://purl.obolibrary.org/obo/CL_0000547) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) SubClassOf [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) -### professional antigen presenting cell `http://purl.obolibrary.org/obo/CL_0000145` +### nucleotide receptor activity `http://purl.obolibrary.org/obo/GO_0016502` #### Added -- [professional antigen presenting cell](http://purl.obolibrary.org/obo/CL_0000145) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) - +- [nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0016502) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleotide receptor activity" -### progenitor cell of endocrine pancreas `http://purl.obolibrary.org/obo/CL_0002351` +- [nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0016502) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -#### Added -- [progenitor cell of endocrine pancreas](http://purl.obolibrary.org/obo/CL_0002351) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0016502) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0016502" +- [nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0016502) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Combining with a nucleotide and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. A nucleotide is a compound that consists of a nucleoside esterified with a phosphate molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:signaling" -### prohemocyte (sensu Nematoda and Protostomia) `http://purl.obolibrary.org/obo/CL_0000385` -#### Removed -- [prohemocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000385) SubClassOf [blood cell (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000390) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -#### Added -- [prohemocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000385) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A precursor of mature hemocytes." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1016/B978-012369493-5.50008-0" +- Class: [nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0016502) -- [prohemocyte (sensu Nematoda and Protostomia)](http://purl.obolibrary.org/obo/CL_0000385) SubClassOf [hematopoietic precursor cell](http://purl.obolibrary.org/obo/CL_0008001) +- [nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0016502) EquivalentTo [signaling receptor activity](http://purl.obolibrary.org/obo/GO_0038023) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976)) +- [nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0016502) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) -### protein phosphorylation `http://purl.obolibrary.org/obo/GO_0006468` +- [nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0016502) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -#### Added -- [protein phosphorylation](http://purl.obolibrary.org/obo/GO_0006468) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0016502) SubClassOf [transmembrane signaling receptor activity](http://purl.obolibrary.org/obo/GO_0004888) -### proximal epiphysis of fibula `http://purl.obolibrary.org/obo/UBERON_0008775` +### nucleotide transmembrane transport `http://purl.obolibrary.org/obo/GO_1901679` #### Added -- [proximal epiphysis of fibula](http://purl.obolibrary.org/obo/UBERON_0008775) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "pr" -- [proximal epiphysis of fibula](http://purl.obolibrary.org/obo/UBERON_0008775) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Note that this term is not intended for use in annotating lateral movement within membranes." -### proximal epiphysis of tibia `http://purl.obolibrary.org/obo/UBERON_0008772` +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of nucleotide across a membrane." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [proximal epiphysis of tibia](http://purl.obolibrary.org/obo/UBERON_0008772) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:pr" -- [proximal epiphysis of tibia](http://purl.obolibrary.org/obo/UBERON_0008772) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-11-22T15:43:23Z" +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleotide transmembrane transport" -### proximal phalanx of manual digit 1 `http://purl.obolibrary.org/obo/UBERON_0004338` +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "nucleotide membrane transport" -#### Added -- [proximal phalanx of manual digit 1](http://purl.obolibrary.org/obo/UBERON_0004338) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1901679" -- [proximal phalanx of manual digit 1](http://purl.obolibrary.org/obo/UBERON_0004338) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976)) -### proximal phalanx of manual digit 2 `http://purl.obolibrary.org/obo/UBERON_0004328` +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -#### Added -- [proximal phalanx of manual digit 2](http://purl.obolibrary.org/obo/UBERON_0004328) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) SubClassOf [results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020) -- [proximal phalanx of manual digit 2](http://purl.obolibrary.org/obo/UBERON_0004328) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) SubClassOf [transmembrane transport](http://purl.obolibrary.org/obo/GO_0055085) +- [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) SubClassOf [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) -### proximal phalanx of manual digit 3 `http://purl.obolibrary.org/obo/UBERON_0004329` + +### nucleotide transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015215` #### Added -- [proximal phalanx of manual digit 3](http://purl.obolibrary.org/obo/UBERON_0004329) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -- [proximal phalanx of manual digit 3](http://purl.obolibrary.org/obo/UBERON_0004329) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015215" +- [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleotide transmembrane transporter activity" -### proximal phalanx of manual digit 4 `http://purl.obolibrary.org/obo/UBERON_0004330` +- [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate, from one side of a membrane to the other." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -#### Added -- [proximal phalanx of manual digit 4](http://purl.obolibrary.org/obo/UBERON_0004330) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) -- [proximal phalanx of manual digit 4](http://purl.obolibrary.org/obo/UBERON_0004330) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976)) +- [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -### proximal phalanx of manual digit 5 `http://purl.obolibrary.org/obo/UBERON_0004331` +- [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) SubClassOf [nucleobase-containing compound transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015932) -#### Added -- [proximal phalanx of manual digit 5](http://purl.obolibrary.org/obo/UBERON_0004331) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [nucleotide transmembrane transport](http://purl.obolibrary.org/obo/GO_1901679) + - [source](http://www.geneontology.org/formats/oboInOwl#http://purl.org/dc/terms/source) "GO_REF:0000090" -- [proximal phalanx of manual digit 5](http://purl.obolibrary.org/obo/UBERON_0004331) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) SubClassOf [organophosphate ester transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015605) -### proximal phalanx of pedal digit 1 `http://purl.obolibrary.org/obo/UBERON_0004332` +### nucleotide transport `http://purl.obolibrary.org/obo/GO_0006862` #### Added -- [proximal phalanx of pedal digit 1](http://purl.obolibrary.org/obo/UBERON_0004332) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [proximal phalanx of pedal digit 1](http://purl.obolibrary.org/obo/UBERON_0004332) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate, into, out of or within a cell." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -### proximal phalanx of pedal digit 2 `http://purl.obolibrary.org/obo/UBERON_0004333` +- [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006862" -#### Added -- [proximal phalanx of pedal digit 2](http://purl.obolibrary.org/obo/UBERON_0004333) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) [label](http://www.w3.org/2000/01/rdf-schema#label) "nucleotide transport" -- [proximal phalanx of pedal digit 2](http://purl.obolibrary.org/obo/UBERON_0004333) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) +- [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976)) -### proximal phalanx of pedal digit 3 `http://purl.obolibrary.org/obo/UBERON_0004334` +- [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) SubClassOf [organophosphate ester transport](http://purl.obolibrary.org/obo/GO_0015748) -#### Added -- [proximal phalanx of pedal digit 3](http://purl.obolibrary.org/obo/UBERON_0004334) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -- [proximal phalanx of pedal digit 3](http://purl.obolibrary.org/obo/UBERON_0004334) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) SubClassOf [nucleobase-containing compound transport](http://purl.obolibrary.org/obo/GO_0015931) -### proximal phalanx of pedal digit 4 `http://purl.obolibrary.org/obo/UBERON_0004335` +### obsolete insect anterior dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001792` +#### Removed +- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00001792" -#### Added -- [proximal phalanx of pedal digit 4](http://purl.obolibrary.org/obo/UBERON_0004335) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [proximal phalanx of pedal digit 4](http://purl.obolibrary.org/obo/UBERON_0004335) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### obsolete insect dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001791` +#### Removed +- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00001791" -### proximal phalanx of pedal digit 5 `http://purl.obolibrary.org/obo/UBERON_0004336` -#### Added -- [proximal phalanx of pedal digit 5](http://purl.obolibrary.org/obo/UBERON_0004336) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [proximal phalanx of pedal digit 5](http://purl.obolibrary.org/obo/UBERON_0004336) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### obsolete insect histoblast `http://purl.obolibrary.org/obo/UBERON_6001789` +#### Removed +- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00001789" -### psoas major muscle `http://purl.obolibrary.org/obo/UBERON_0001298` -#### Added -- [psoas major muscle](http://purl.obolibrary.org/obo/UBERON_0001298) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### obsolete insect posterior dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001809` +#### Removed +- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00001809" -- [psoas major muscle](http://purl.obolibrary.org/obo/UBERON_0001298) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### psoas minor muscle `http://purl.obolibrary.org/obo/UBERON_0001372` +### organic heteromonocyclic compound `http://purl.obolibrary.org/obo/CHEBI_25693` #### Added -- [psoas minor muscle](http://purl.obolibrary.org/obo/UBERON_0001372) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [organic heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_25693) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "organic heteromonocyclic compounds" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [psoas minor muscle](http://purl.obolibrary.org/obo/UBERON_0001372) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [organic heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_25693) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [organic heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_25693) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:25693" -### pubococcygeus muscle `http://purl.obolibrary.org/obo/UBERON_0011528` +- [organic heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_25693) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [pubococcygeus muscle](http://purl.obolibrary.org/obo/UBERON_0011528) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [organic heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_25693) [label](http://www.w3.org/2000/01/rdf-schema#label) "organic heteromonocyclic compound" -- [pubococcygeus muscle](http://purl.obolibrary.org/obo/UBERON_0011528) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [organic heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_25693) +- [organic heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_25693) SubClassOf [organic heterocyclic compound](http://purl.obolibrary.org/obo/CHEBI_24532) -### puborectalis muscle `http://purl.obolibrary.org/obo/UBERON_0011512` +- [organic heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_25693) SubClassOf [heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_33670) -#### Added -- [puborectalis muscle](http://purl.obolibrary.org/obo/UBERON_0011512) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [puborectalis muscle](http://purl.obolibrary.org/obo/UBERON_0011512) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### organic mancude parent `http://purl.obolibrary.org/obo/CHEBI_35573` +#### Added +- [organic mancude parent](http://purl.obolibrary.org/obo/CHEBI_35573) [label](http://www.w3.org/2000/01/rdf-schema#label) "organic mancude parent" -### pulmonary artery `http://purl.obolibrary.org/obo/UBERON_0002012` -#### Removed -- [pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0002012) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [organic mancude parent](http://purl.obolibrary.org/obo/CHEBI_35573) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0002012) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [organic mancude parent](http://purl.obolibrary.org/obo/CHEBI_35573) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35573" +- [organic mancude parent](http://purl.obolibrary.org/obo/CHEBI_35573) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [organic mancude parent](http://purl.obolibrary.org/obo/CHEBI_35573) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "organic mancude parents" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### pulmonary artery endothelial cell `http://purl.obolibrary.org/obo/CL_1001568` -#### Removed -- [pulmonary artery endothelial cell](http://purl.obolibrary.org/obo/CL_1001568) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [organic mancude parent](http://purl.obolibrary.org/obo/CHEBI_35573) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "organic mancude-ring parents" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [pulmonary artery endothelial cell](http://purl.obolibrary.org/obo/CL_1001568) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [organic mancude parent](http://purl.obolibrary.org/obo/CHEBI_35573) +- [organic mancude parent](http://purl.obolibrary.org/obo/CHEBI_35573) SubClassOf [mancude ring](http://purl.obolibrary.org/obo/CHEBI_35568) +- [organic mancude parent](http://purl.obolibrary.org/obo/CHEBI_35573) SubClassOf [organic fundamental parent](http://purl.obolibrary.org/obo/CHEBI_33245) -### pulmonary capillary `http://purl.obolibrary.org/obo/UBERON_0016405` -#### Added -- [pulmonary capillary](http://purl.obolibrary.org/obo/UBERON_0016405) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### organogenesis stage `http://purl.obolibrary.org/obo/UBERON_0000111` +#### Removed +- [organogenesis stage](http://purl.obolibrary.org/obo/UBERON_0000111) SubClassOf [preceded by](http://purl.obolibrary.org/obo/BFO_0000062) some [neurula stage](http://purl.obolibrary.org/obo/UBERON_0000110) -- [pulmonary capillary](http://purl.obolibrary.org/obo/UBERON_0016405) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +#### Added +- [organogenesis stage](http://purl.obolibrary.org/obo/UBERON_0000111) [see also](http://www.w3.org/2000/01/rdf-schema#seeAlso) "https://github.com/obophenotype/developmental-stage-ontologies/issues/84"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -### pulmonary capillary plexus `http://purl.obolibrary.org/obo/UBERON_0035754` +### ovulation cycle process `http://purl.obolibrary.org/obo/GO_0022602` #### Removed -- [pulmonary capillary plexus](http://purl.obolibrary.org/obo/UBERON_0035754) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ovulation cycle process](http://purl.obolibrary.org/obo/GO_0022602) EquivalentTo [biological_process](http://purl.obolibrary.org/obo/GO_0008150) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [ovulation cycle](http://purl.obolibrary.org/obo/GO_0042698)) -- [pulmonary capillary plexus](http://purl.obolibrary.org/obo/UBERON_0035754) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -### pulmonary interstitial fibroblast `http://purl.obolibrary.org/obo/CL_0002241` +### oxacycle `http://purl.obolibrary.org/obo/CHEBI_38104` #### Added -- [pulmonary interstitial fibroblast](http://purl.obolibrary.org/obo/CL_0002241) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) [label](http://www.w3.org/2000/01/rdf-schema#label) "oxacycle" -- [pulmonary interstitial fibroblast](http://purl.obolibrary.org/obo/CL_0002241) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any organic heterocyclic compound containing at least one ring oxygen atom." +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "heterocyclic organooxygen compounds" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### pulmonary vascular system `http://purl.obolibrary.org/obo/UBERON_0008886` -#### Removed -- [pulmonary vascular system](http://purl.obolibrary.org/obo/UBERON_0008886) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:17134300" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" -- [pulmonary vascular system](http://purl.obolibrary.org/obo/UBERON_0008886) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:38104" +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "oxacycles" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "organooxygen heterocyclic compounds" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### pyramidalis `http://purl.obolibrary.org/obo/UBERON_0011016` +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -#### Added -- [pyramidalis](http://purl.obolibrary.org/obo/UBERON_0011016) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [pyramidalis](http://purl.obolibrary.org/obo/UBERON_0011016) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) SubClassOf [organooxygen compound](http://purl.obolibrary.org/obo/CHEBI_36963) -### racemate `http://purl.obolibrary.org/obo/CHEBI_60911` +- [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) SubClassOf [organic heterocyclic compound](http://purl.obolibrary.org/obo/CHEBI_24532) -#### Added -- [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) [label](http://www.w3.org/2000/01/rdf-schema#label) "racemate" -- [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:60911" +### oxolanes `http://purl.obolibrary.org/obo/CHEBI_26912` -- [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A racemate is an equimolar mixture of a pair of enantiomers." +#### Added +- [oxolanes](http://purl.obolibrary.org/obo/CHEBI_26912) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "melange racemique" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [oxolanes](http://purl.obolibrary.org/obo/CHEBI_26912) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [oxolanes](http://purl.obolibrary.org/obo/CHEBI_26912) [label](http://www.w3.org/2000/01/rdf-schema#label) "oxolanes" -- [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "racemates" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [oxolanes](http://purl.obolibrary.org/obo/CHEBI_26912) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26912" -- [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [oxolanes](http://purl.obolibrary.org/obo/CHEBI_26912) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any oxacycle having an oxolane (tetrahydrofuran) skeleton." -- [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "racemic mixture" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- Class: [oxolanes](http://purl.obolibrary.org/obo/CHEBI_26912) -- Class: [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) +- [oxolanes](http://purl.obolibrary.org/obo/CHEBI_26912) SubClassOf [oxacycle](http://purl.obolibrary.org/obo/CHEBI_38104) -- [racemate](http://purl.obolibrary.org/obo/CHEBI_60911) SubClassOf [mixture](http://purl.obolibrary.org/obo/CHEBI_60004) +- [oxolanes](http://purl.obolibrary.org/obo/CHEBI_26912) SubClassOf [organic heteromonocyclic compound](http://purl.obolibrary.org/obo/CHEBI_25693) -### radiale `http://purl.obolibrary.org/obo/UBERON_0001427` +### pentose `http://purl.obolibrary.org/obo/CHEBI_25901` #### Added -- [radiale](http://purl.obolibrary.org/obo/UBERON_0001427) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [radiale](http://purl.obolibrary.org/obo/UBERON_0001427) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) [label](http://www.w3.org/2000/01/rdf-schema#label) "pentose" +- [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:25901" -### radius bone `http://purl.obolibrary.org/obo/UBERON_0001423` +- [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -#### Added -- [radius bone](http://purl.obolibrary.org/obo/UBERON_0001423) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [radius bone](http://purl.obolibrary.org/obo/UBERON_0001423) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "pentoses" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### rectus abdominis muscle `http://purl.obolibrary.org/obo/UBERON_0002382` +- [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A five-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldopentose) or a ketone group at position 2 (ketopentose)." -#### Added -- [rectus abdominis muscle](http://purl.obolibrary.org/obo/UBERON_0002382) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) -- [rectus abdominis muscle](http://purl.obolibrary.org/obo/UBERON_0002382) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) SubClassOf [monosaccharide](http://purl.obolibrary.org/obo/CHEBI_35381) -### rectus capitis lateralis muscle `http://purl.obolibrary.org/obo/UBERON_0003250` +### pentose biosynthetic process `http://purl.obolibrary.org/obo/GO_0019322` #### Added -- [rectus capitis lateralis muscle](http://purl.obolibrary.org/obo/UBERON_0003250) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose anabolism" -- [rectus capitis lateralis muscle](http://purl.obolibrary.org/obo/UBERON_0003250) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0019322" +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) [label](http://www.w3.org/2000/01/rdf-schema#label) "pentose biosynthetic process" -### rectus capitis posterior major `http://purl.obolibrary.org/obo/UBERON_0008454` +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -#### Added -- [rectus capitis posterior major](http://purl.obolibrary.org/obo/UBERON_0008454) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose formation" -- [rectus capitis posterior major](http://purl.obolibrary.org/obo/UBERON_0008454) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose synthesis" -### regulation of ATP-dependent activity `http://purl.obolibrary.org/obo/GO_0043462` +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose biosynthesis" -#### Added -- [regulation of ATP-dependent activity](http://purl.obolibrary.org/obo/GO_0043462) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- Class: [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901)) -### regulation of DNA binding `http://purl.obolibrary.org/obo/GO_0051101` +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) SubClassOf [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) -#### Added -- [regulation of DNA binding](http://purl.obolibrary.org/obo/GO_0051101) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) +- [pentose biosynthetic process](http://purl.obolibrary.org/obo/GO_0019322) SubClassOf [monosaccharide biosynthetic process](http://purl.obolibrary.org/obo/GO_0046364) -### regulation of RNA binding `http://purl.obolibrary.org/obo/GO_1905214` + +### pentose catabolic process `http://purl.obolibrary.org/obo/GO_0019323` #### Added -- [regulation of RNA binding](http://purl.obolibrary.org/obo/GO_1905214) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0019323" +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose degradation" -### regulation of apolipoprotein binding `http://purl.obolibrary.org/obo/GO_2000656` +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) [label](http://www.w3.org/2000/01/rdf-schema#label) "pentose catabolic process" -#### Added -- [regulation of apolipoprotein binding](http://purl.obolibrary.org/obo/GO_2000656) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose breakdown" +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -### regulation of binding `http://purl.obolibrary.org/obo/GO_0051098` +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose catabolism" -#### Added -- [regulation of binding](http://purl.obolibrary.org/obo/GO_0051098) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- Class: [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) -### regulation of calcium ion binding `http://purl.obolibrary.org/obo/GO_1901876` +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901)) -#### Added -- [regulation of calcium ion binding](http://purl.obolibrary.org/obo/GO_1901876) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) SubClassOf [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) + +- [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) SubClassOf [monosaccharide catabolic process](http://purl.obolibrary.org/obo/GO_0046365) -### regulation of calcium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1901019` + +### pentose catabolic process to acetate `http://purl.obolibrary.org/obo/GO_1902699` #### Added -- [regulation of calcium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901019) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "acidogenesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tt" +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "tb" -### regulation of catalytic activity `http://purl.obolibrary.org/obo/GO_0050790` +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of pentose to acetate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:19539744" -#### Added -- [regulation of catalytic activity](http://purl.obolibrary.org/obo/GO_0050790) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000093" -### regulation of cell death `http://purl.obolibrary.org/obo/GO_0010941` -#### Removed -- [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18727018" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tb" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mengo_curators" -- [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0010941" +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose catabolism to acetate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of cell death" +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [label](http://www.w3.org/2000/01/rdf-schema#label) "pentose catabolic process to acetate" -- [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1902699" -- Class: [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2014-02-19T18:28:38Z" -- [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [cell death](http://purl.obolibrary.org/obo/GO_0008219)) +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose breakdown to acetate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [cell death](http://purl.obolibrary.org/obo/GO_0008219) +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose degradation to acetate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) SubClassOf [regulation of cellular process](http://purl.obolibrary.org/obo/GO_0050794) +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:1990289" +- Class: [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) -### regulation of chromatin binding `http://purl.obolibrary.org/obo/GO_0035561` +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [acetate](http://purl.obolibrary.org/obo/CHEBI_30089)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901)) -#### Added -- [regulation of chromatin binding](http://purl.obolibrary.org/obo/GO_0035561) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) SubClassOf [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) -### regulation of collagen binding `http://purl.obolibrary.org/obo/GO_0033341` +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [acetate](http://purl.obolibrary.org/obo/CHEBI_30089) -#### Added -- [regulation of collagen binding](http://purl.obolibrary.org/obo/GO_0033341) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose catabolic process to acetate](http://purl.obolibrary.org/obo/GO_1902699) SubClassOf [acetate metabolic process](http://purl.obolibrary.org/obo/GO_0006083) -### regulation of deoxyribonuclease activity `http://purl.obolibrary.org/obo/GO_0032070` +### pentose catabolic process to butyrate `http://purl.obolibrary.org/obo/GO_1902698` #### Added -- [regulation of deoxyribonuclease activity](http://purl.obolibrary.org/obo/GO_0032070) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "tb" +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose breakdown to butyrate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### regulation of epinephrine secretion `http://purl.obolibrary.org/obo/GO_0014060` -#### Removed -- [regulation of epinephrine secretion](http://purl.obolibrary.org/obo/GO_0014060) SubClassOf [regulation of catecholamine secretion](http://purl.obolibrary.org/obo/GO_0050433) +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of pentose to butyrate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:19539744" -#### Added -- [regulation of epinephrine secretion](http://purl.obolibrary.org/obo/GO_0014060) SubClassOf [regulation of secretion](http://purl.obolibrary.org/obo/GO_0051046) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000093" -### regulation of euchromatin binding `http://purl.obolibrary.org/obo/GO_1904793` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18727018" -#### Added -- [regulation of euchromatin binding](http://purl.obolibrary.org/obo/GO_1904793) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mengo_curators" +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [label](http://www.w3.org/2000/01/rdf-schema#label) "pentose catabolic process to butyrate" -### regulation of hepatic stellate cell activation `http://purl.obolibrary.org/obo/GO_2000489` +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose degradation to butyrate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:1990288" -- [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1902698" -- [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of hepatic stellate cell activation" +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose catabolism to butyrate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-03-14T03:48:32Z" +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2014-02-19T18:28:28Z" -- [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:2000489" +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "acidogenesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tt" -- [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of hepatic stellate cell activation." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" +- Class: [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) -- Class: [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [butyrate](http://purl.obolibrary.org/obo/CHEBI_17968)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901)) -- [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733)) +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) SubClassOf [butyrate metabolic process](http://purl.obolibrary.org/obo/GO_0019605) -- [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_0035733) +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) -- [regulation of hepatic stellate cell activation](http://purl.obolibrary.org/obo/GO_2000489) SubClassOf [regulation of cell activation](http://purl.obolibrary.org/obo/GO_0050865) +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [butyrate](http://purl.obolibrary.org/obo/CHEBI_17968) +- [pentose catabolic process to butyrate](http://purl.obolibrary.org/obo/GO_1902698) SubClassOf [pentose catabolic process](http://purl.obolibrary.org/obo/GO_0019323) -### regulation of hepatic stellate cell migration `http://purl.obolibrary.org/obo/GO_0061869` -#### Added -- [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of hepatic stellate cell migration." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24204762" +### pentose derivative `http://purl.obolibrary.org/obo/CHEBI_63409` -- [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0061869" +#### Added +- [pentose derivative](http://purl.obolibrary.org/obo/CHEBI_63409) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "pentose derivatives" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of hepatic stellate cell migration" +- [pentose derivative](http://purl.obolibrary.org/obo/CHEBI_63409) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:63409" -- [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2017-05-01T13:04:20Z" +- [pentose derivative](http://purl.obolibrary.org/obo/CHEBI_63409) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "dph" +- [pentose derivative](http://purl.obolibrary.org/obo/CHEBI_63409) [label](http://www.w3.org/2000/01/rdf-schema#label) "pentose derivative" -- [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [pentose derivative](http://purl.obolibrary.org/obo/CHEBI_63409) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- Class: [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) +- [pentose derivative](http://purl.obolibrary.org/obo/CHEBI_63409) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A monosaccharide derivative that is formally obtained from a pentose." -- [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868)) +- Class: [pentose derivative](http://purl.obolibrary.org/obo/CHEBI_63409) -- [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061868) +- [pentose derivative](http://purl.obolibrary.org/obo/CHEBI_63409) SubClassOf [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) -- [regulation of hepatic stellate cell migration](http://purl.obolibrary.org/obo/GO_0061869) SubClassOf [regulation of fibroblast migration](http://purl.obolibrary.org/obo/GO_0010762) +- [pentose derivative](http://purl.obolibrary.org/obo/CHEBI_63409) SubClassOf [has_functional_parent](http://purl.obolibrary.org/obo/chebi#has_functional_parent) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) -### regulation of hepatic stellate cell proliferation `http://purl.obolibrary.org/obo/GO_1904897` +### pentose metabolic process `http://purl.obolibrary.org/obo/GO_0019321` #### Added -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2016-01-14T15:56:59Z" +- [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pentose metabolism" -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1904897" +- [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) [label](http://www.w3.org/2000/01/rdf-schema#label) "pentose metabolic process" -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of hepatic perisinusoidal cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0019321" -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "sl" +- Class: [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of hepatic stellate cell proliferation." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901)) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:15358192" +- [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) SubClassOf [monosaccharide metabolic process](http://purl.obolibrary.org/obo/GO_0005996) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000058" +- [pentose metabolic process](http://purl.obolibrary.org/obo/GO_0019321) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of Ito cell proliferation" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of hepatic stellate cell proliferation" +### pentose phosphate `http://purl.obolibrary.org/obo/CHEBI_84055` + +#### Added +- [pentose phosphate](http://purl.obolibrary.org/obo/CHEBI_84055) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [pentose phosphate](http://purl.obolibrary.org/obo/CHEBI_84055) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:84055" -- Class: [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) +- [pentose phosphate](http://purl.obolibrary.org/obo/CHEBI_84055) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922)) +- [pentose phosphate](http://purl.obolibrary.org/obo/CHEBI_84055) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "pentose phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1990922) +- [pentose phosphate](http://purl.obolibrary.org/obo/CHEBI_84055) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any phospho sugar that is the phosphate derivative of pentose." -- [regulation of hepatic stellate cell proliferation](http://purl.obolibrary.org/obo/GO_1904897) SubClassOf [regulation of fibroblast proliferation](http://purl.obolibrary.org/obo/GO_0048145) +- [pentose phosphate](http://purl.obolibrary.org/obo/CHEBI_84055) [label](http://www.w3.org/2000/01/rdf-schema#label) "pentose phosphate" +- Class: [pentose phosphate](http://purl.obolibrary.org/obo/CHEBI_84055) -### regulation of hydrolase activity `http://purl.obolibrary.org/obo/GO_0051336` +- [pentose phosphate](http://purl.obolibrary.org/obo/CHEBI_84055) SubClassOf [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) -#### Added -- [regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051336) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose phosphate](http://purl.obolibrary.org/obo/CHEBI_84055) SubClassOf [pentose derivative](http://purl.obolibrary.org/obo/CHEBI_63409) -### regulation of iron ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1904254` +### pentose transmembrane transport `http://purl.obolibrary.org/obo/GO_0015750` #### Added -- [regulation of iron ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1904254) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The process in which pentose is transported across a lipid bilayer, from one side of a membrane to the other. A pentose is any aldose with a chain of five carbon atoms in the molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" +- [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### regulation of kinase activity `http://purl.obolibrary.org/obo/GO_0043549` +- [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "pentose transport" -#### Added -- [regulation of kinase activity](http://purl.obolibrary.org/obo/GO_0043549) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015750" +- [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) [label](http://www.w3.org/2000/01/rdf-schema#label) "pentose transmembrane transport" -### regulation of ligase activity `http://purl.obolibrary.org/obo/GO_0051340` +- Class: [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) -#### Added -- [regulation of ligase activity](http://purl.obolibrary.org/obo/GO_0051340) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901)) +- [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) SubClassOf [results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020) -### regulation of lipid binding `http://purl.obolibrary.org/obo/GO_1900130` +- [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) SubClassOf [monosaccharide transmembrane transport](http://purl.obolibrary.org/obo/GO_0015749) -#### Added -- [regulation of lipid binding](http://purl.obolibrary.org/obo/GO_1900130) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) -### regulation of lipid transporter activity `http://purl.obolibrary.org/obo/GO_0110112` +### pentose transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015146` #### Added -- [regulation of lipid transporter activity](http://purl.obolibrary.org/obo/GO_0110112) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015146) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" +- [pentose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015146) [label](http://www.w3.org/2000/01/rdf-schema#label) "pentose transmembrane transporter activity" -### regulation of microtubule binding `http://purl.obolibrary.org/obo/GO_1904526` +- [pentose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015146) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015146" -#### Added -- [regulation of microtubule binding](http://purl.obolibrary.org/obo/GO_1904526) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015146) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of a pentose sugar from one side of a membrane to the other. Pentose is a monosaccharide with 5 carbon atoms." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0815340729" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mtg_transport" -### regulation of molecular function `http://purl.obolibrary.org/obo/GO_0065009` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" -#### Added -- [regulation of molecular function](http://purl.obolibrary.org/obo/GO_0065009) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- Class: [pentose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015146) +- [pentose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015146) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901)) -### regulation of monoatomic ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0032412` +- [pentose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015146) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [pentose](http://purl.obolibrary.org/obo/CHEBI_25901) -#### Added -- [regulation of monoatomic ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0032412) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [pentose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015146) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [pentose transmembrane transport](http://purl.obolibrary.org/obo/GO_0015750) + +- [pentose transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015146) SubClassOf [monosaccharide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015145) -### regulation of neuron death `http://purl.obolibrary.org/obo/GO_1901214` +### peptidase activity `http://purl.obolibrary.org/obo/GO_0008233` #### Removed -- [regulation of neuron death](http://purl.obolibrary.org/obo/GO_1901214) SubClassOf [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0070011" -#### Added -- [regulation of neuron death](http://purl.obolibrary.org/obo/GO_1901214) SubClassOf [regulation of cellular process](http://purl.obolibrary.org/obo/GO_0050794) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0070010" +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -### regulation of neurotransmitter receptor activity `http://purl.obolibrary.org/obo/GO_0099601` +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "proteinase activity" -#### Added -- [regulation of neurotransmitter receptor activity](http://purl.obolibrary.org/obo/GO_0099601) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "protease activity" +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-3065959" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "An unknown protease degrades hCBXs" -### regulation of nuclease activity `http://purl.obolibrary.org/obo/GO_0032069` +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "peptidase activity, acting on D-amino acid peptides" -#### Added -- [regulation of nuclease activity](http://purl.obolibrary.org/obo/GO_0032069) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0008233" +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "peptidase activity, acting on L-amino acid peptides" -### regulation of peptidase activity `http://purl.obolibrary.org/obo/GO_0052547` +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "peptide hydrolase activity" -#### Added -- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [label](http://www.w3.org/2000/01/rdf-schema#label) "peptidase activity" +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-376149" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Proteolytic processing of SLIT" -### regulation of postsynaptic neurotransmitter receptor activity `http://purl.obolibrary.org/obo/GO_0098962` +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_candida](http://purl.obolibrary.org/obo/go#goslim_candida) -#### Added -- [regulation of postsynaptic neurotransmitter receptor activity](http://purl.obolibrary.org/obo/GO_0098962) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_metagenomics](http://purl.obolibrary.org/obo/go#goslim_metagenomics) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-3065958" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "An unknown protease degrades ACACA" -### regulation of programmed cell death `http://purl.obolibrary.org/obo/GO_0043067` -#### Removed -- [regulation of programmed cell death](http://purl.obolibrary.org/obo/GO_0043067) SubClassOf [regulation of cell death](http://purl.obolibrary.org/obo/GO_0010941) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_yeast](http://purl.obolibrary.org/obo/go#goslim_yeast) -#### Added -- [regulation of programmed cell death](http://purl.obolibrary.org/obo/GO_0043067) SubClassOf [regulation of cellular process](http://purl.obolibrary.org/obo/GO_0050794) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-205112" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "gamma-secretase cleaves p75NTR, releasing NRIF and TRAF6" +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_chembl](http://purl.obolibrary.org/obo/go#goslim_chembl) -### regulation of protein binding `http://purl.obolibrary.org/obo/GO_0043393` +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_drosophila](http://purl.obolibrary.org/obo/go#goslim_drosophila) -#### Added -- [regulation of protein binding](http://purl.obolibrary.org/obo/GO_0043393) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "hydrolase, acting on peptide bonds" +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-3000243" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Unknown lysosomal protease degrades CBLIF:RCbl to release Cbl" -### regulation of protein kinase activity `http://purl.obolibrary.org/obo/GO_0045859` +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [goslim_pir](http://purl.obolibrary.org/obo/go#goslim_pir) -#### Added -- [regulation of protein kinase activity](http://purl.obolibrary.org/obo/GO_0045859) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-3139027" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "Maturation of HIV Virion" + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-3000263" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "TCN2:RCbl is degraded to release RCbl" + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-5684864" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "NAPSA, CTSH, PGA3-5 cleave pro-SFTPB" + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-5685902" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "NAPSA, CTSH, PGA3-5 cleave pro-SFTPC" + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-448678" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "CTSG cleaves CASP1(1-404)" + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-4167501" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "An unknown protease degrades ACACB" + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-6803060" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "DCD(63-110) is processed to DCD(63-109)" + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Reactome:R-HSA-5655483" + - [label](http://www.w3.org/2000/01/rdf-schema#label) "USP1 autocleavage" + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EC:3.4.-.-" + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:jl" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0815332181" + +- Class: [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) SubClassOf [hydrolase activity](http://purl.obolibrary.org/obo/GO_0016787) + +- [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) SubClassOf [catalytic activity, acting on a protein](http://purl.obolibrary.org/obo/GO_0140096) + + + +### peptidase complex `http://purl.obolibrary.org/obo/GO_1905368` +#### Removed +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1905368" + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) [label](http://www.w3.org/2000/01/rdf-schema#label) "peptidase complex" + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "protease complex" + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "An example of this is PLAU in human (UniProt symbol P00749) in PMID:1689240 (inferred from direct assay)." + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "cellular_component" + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "tryptase complex" + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A protein complex which is capable of peptidase activity." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:bhm" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000088" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:1689240" + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bhm" + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2016-08-16T12:49:36Z" + +- Class: [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) EquivalentTo [protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233)) + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) SubClassOf [capable of](http://purl.obolibrary.org/obo/RO_0002215) some [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) + +- [peptidase complex](http://purl.obolibrary.org/obo/GO_1905368) SubClassOf [catalytic complex](http://purl.obolibrary.org/obo/GO_1902494) + + + +### peptidyl-amino acid modification `http://purl.obolibrary.org/obo/GO_0018193` +#### Removed +- [peptidyl-amino acid modification](http://purl.obolibrary.org/obo/GO_0018193) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [peptidyl-amino acid modification](http://purl.obolibrary.org/obo/GO_0018193) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### peptidyl-tyrosine modification `http://purl.obolibrary.org/obo/GO_0018212` +#### Removed +- [peptidyl-tyrosine modification](http://purl.obolibrary.org/obo/GO_0018212) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [peptidyl-tyrosine modification](http://purl.obolibrary.org/obo/GO_0018212) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### peptidyl-tyrosine phosphorylation `http://purl.obolibrary.org/obo/GO_0018108` +#### Removed +- [peptidyl-tyrosine phosphorylation](http://purl.obolibrary.org/obo/GO_0018108) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [peptidyl-tyrosine phosphorylation](http://purl.obolibrary.org/obo/GO_0018108) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### peripheral nervous system myelin formation `http://purl.obolibrary.org/obo/GO_0032290` + +#### Added +- [peripheral nervous system myelin formation](http://purl.obolibrary.org/obo/GO_0032290) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "peripheral nervous system myelin sheath formation" + + +### phosphate ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015114` + +#### Added +- [phosphate ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015114) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [hydrogenphosphate](http://purl.obolibrary.org/obo/CHEBI_43474) + + +### phospho sugar `http://purl.obolibrary.org/obo/CHEBI_33447` + +#### Added +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:15132" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:9320" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "phosphosugar" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "phospho sugars" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:33447" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "phosphorylated sugar" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00934" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any monosaccharide containing an alcoholic hydroxy group esterified with phosphoric acid." + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:26086" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "phosphosugars" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "monosaccharide phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "phosphorylated sugars" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:18186488" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:25406" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [label](http://www.w3.org/2000/01/rdf-schema#label) "phospho sugar" + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "phospho sugar" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- Class: [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) SubClassOf [carbohydrate phosphate](http://purl.obolibrary.org/obo/CHEBI_26816) + +- [phospho sugar](http://purl.obolibrary.org/obo/CHEBI_33447) SubClassOf [monosaccharide derivative](http://purl.obolibrary.org/obo/CHEBI_63367) + + +### platelet `http://purl.obolibrary.org/obo/CL_0000233` +#### Removed +- [platelet](http://purl.obolibrary.org/obo/CL_0000233) EquivalentTo [myeloid cell](http://purl.obolibrary.org/obo/CL_0000763) and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [anucleate](http://purl.obolibrary.org/obo/PATO_0001405)) and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [discoid](http://purl.obolibrary.org/obo/PATO_0001874)) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some [blood coagulation](http://purl.obolibrary.org/obo/GO_0007596)) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some [blood circulation](http://purl.obolibrary.org/obo/GO_0008015)) + +- [platelet](http://purl.obolibrary.org/obo/CL_0000233) SubClassOf [capable of](http://purl.obolibrary.org/obo/RO_0002215) some [blood coagulation](http://purl.obolibrary.org/obo/GO_0007596) + +- [platelet](http://purl.obolibrary.org/obo/CL_0000233) SubClassOf [capable of](http://purl.obolibrary.org/obo/RO_0002215) some [blood circulation](http://purl.obolibrary.org/obo/GO_0008015) + +#### Added +- [platelet](http://purl.obolibrary.org/obo/CL_0000233) SubClassOf [capable of part of](http://purl.obolibrary.org/obo/RO_0002216) some [blood coagulation](http://purl.obolibrary.org/obo/GO_0007596) + + +### positive regulation of ATP biosynthetic process `http://purl.obolibrary.org/obo/GO_2001171` + +#### Added +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of ATP biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "positive regulation of ATP regeneration" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-10-26T03:18:26Z" + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of ATP biosynthetic process" + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of ATP formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of ATP synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "kmv" + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of ATP biosynthetic process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of ATP anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:2001171" + +- Class: [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754)) + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) SubClassOf [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) SubClassOf [positive regulation of biosynthetic process](http://purl.obolibrary.org/obo/GO_0009891) + +- [positive regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001171) SubClassOf [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) + + +### positive regulation of ATP metabolic process `http://purl.obolibrary.org/obo/GO_1903580` + +#### Added +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "sl" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of ATP metabolic process" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of ATP metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of ATP metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of ATP metabolic process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20695849" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000058" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2014-10-30T19:04:42Z" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of ATP metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1903580" + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of ATP metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- Class: [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034)) + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) SubClassOf [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) SubClassOf [positive regulation of phosphorus metabolic process](http://purl.obolibrary.org/obo/GO_0010562) + +- [positive regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903580) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) + + +### positive regulation of ATP-dependent activity `http://purl.obolibrary.org/obo/GO_0032781` +#### Removed +- [positive regulation of ATP-dependent activity](http://purl.obolibrary.org/obo/GO_0032781) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of ATP-dependent activity](http://purl.obolibrary.org/obo/GO_0032781) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of DNA binding `http://purl.obolibrary.org/obo/GO_0043388` +#### Removed +- [positive regulation of DNA binding](http://purl.obolibrary.org/obo/GO_0043388) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of DNA binding](http://purl.obolibrary.org/obo/GO_0043388) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of RNA binding `http://purl.obolibrary.org/obo/GO_1905216` +#### Removed +- [positive regulation of RNA binding](http://purl.obolibrary.org/obo/GO_1905216) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of RNA binding](http://purl.obolibrary.org/obo/GO_1905216) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of adenosine receptor signaling pathway `http://purl.obolibrary.org/obo/GO_0060168` + +#### Added +- [positive regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060168) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" + +- [positive regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060168) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060168) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of adenosine receptor signalling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [positive regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060168) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of adenosine receptor signaling pathway" + +- [positive regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060168) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0060168" + +- Class: [positive regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060168) + +- [positive regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060168) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973)) + +- [positive regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060168) SubClassOf [positive regulation of G protein-coupled receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0045745) + +- [positive regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060168) SubClassOf [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) + +- [positive regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060168) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) + + +### positive regulation of adenosine transport `http://purl.obolibrary.org/obo/GO_0032251` + +#### Added +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of adenosine transport" + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of adenosine transport" + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of adenosine transport" + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "stimulation of adenosine transport" + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of adenosine transport" + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032251" + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of adenosine transport" + +- Class: [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238)) + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) SubClassOf [regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032249) + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) SubClassOf [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) + +- [positive regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032251) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) + + +### positive regulation of apolipoprotein binding `http://purl.obolibrary.org/obo/GO_2000658` +#### Removed +- [positive regulation of apolipoprotein binding](http://purl.obolibrary.org/obo/GO_2000658) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of apolipoprotein binding](http://purl.obolibrary.org/obo/GO_2000658) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of binding `http://purl.obolibrary.org/obo/GO_0051099` +#### Removed +- [positive regulation of binding](http://purl.obolibrary.org/obo/GO_0051099) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of binding](http://purl.obolibrary.org/obo/GO_0051099) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of calcium ion binding `http://purl.obolibrary.org/obo/GO_1901878` +#### Removed +- [positive regulation of calcium ion binding](http://purl.obolibrary.org/obo/GO_1901878) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of calcium ion binding](http://purl.obolibrary.org/obo/GO_1901878) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of calcium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1901021` +#### Removed +- [positive regulation of calcium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901021) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of calcium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901021) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of catalytic activity `http://purl.obolibrary.org/obo/GO_0043085` +#### Removed +- [positive regulation of catalytic activity](http://purl.obolibrary.org/obo/GO_0043085) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of catalytic activity](http://purl.obolibrary.org/obo/GO_0043085) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of chromatin binding `http://purl.obolibrary.org/obo/GO_0035563` +#### Removed +- [positive regulation of chromatin binding](http://purl.obolibrary.org/obo/GO_0035563) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of chromatin binding](http://purl.obolibrary.org/obo/GO_0035563) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of collagen binding `http://purl.obolibrary.org/obo/GO_0033343` +#### Removed +- [positive regulation of collagen binding](http://purl.obolibrary.org/obo/GO_0033343) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of collagen binding](http://purl.obolibrary.org/obo/GO_0033343) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of deoxyribonuclease activity `http://purl.obolibrary.org/obo/GO_0032077` +#### Removed +- [positive regulation of deoxyribonuclease activity](http://purl.obolibrary.org/obo/GO_0032077) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of deoxyribonuclease activity](http://purl.obolibrary.org/obo/GO_0032077) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of euchromatin binding `http://purl.obolibrary.org/obo/GO_1904795` +#### Removed +- [positive regulation of euchromatin binding](http://purl.obolibrary.org/obo/GO_1904795) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of euchromatin binding](http://purl.obolibrary.org/obo/GO_1904795) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of hydrolase activity `http://purl.obolibrary.org/obo/GO_0051345` +#### Removed +- [positive regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051345) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051345) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0032414` +#### Removed +- [positive regulation of ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0032414) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0032414) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of iron ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1904256` +#### Removed +- [positive regulation of iron ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1904256) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of iron ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1904256) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of kinase activity `http://purl.obolibrary.org/obo/GO_0033674` +#### Removed +- [positive regulation of kinase activity](http://purl.obolibrary.org/obo/GO_0033674) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of kinase activity](http://purl.obolibrary.org/obo/GO_0033674) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of ligase activity `http://purl.obolibrary.org/obo/GO_0051351` +#### Removed +- [positive regulation of ligase activity](http://purl.obolibrary.org/obo/GO_0051351) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of ligase activity](http://purl.obolibrary.org/obo/GO_0051351) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of lipid binding `http://purl.obolibrary.org/obo/GO_1900132` +#### Removed +- [positive regulation of lipid binding](http://purl.obolibrary.org/obo/GO_1900132) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of lipid binding](http://purl.obolibrary.org/obo/GO_1900132) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of lipid transporter activity `http://purl.obolibrary.org/obo/GO_0110113` +#### Removed +- [positive regulation of lipid transporter activity](http://purl.obolibrary.org/obo/GO_0110113) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of lipid transporter activity](http://purl.obolibrary.org/obo/GO_0110113) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of microtubule binding `http://purl.obolibrary.org/obo/GO_1904528` +#### Removed +- [positive regulation of microtubule binding](http://purl.obolibrary.org/obo/GO_1904528) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of microtubule binding](http://purl.obolibrary.org/obo/GO_1904528) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of molecular function `http://purl.obolibrary.org/obo/GO_0044093` +#### Removed +- [positive regulation of molecular function](http://purl.obolibrary.org/obo/GO_0044093) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of molecular function](http://purl.obolibrary.org/obo/GO_0044093) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of nuclease activity `http://purl.obolibrary.org/obo/GO_0032075` +#### Removed +- [positive regulation of nuclease activity](http://purl.obolibrary.org/obo/GO_0032075) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of nuclease activity](http://purl.obolibrary.org/obo/GO_0032075) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of nucleoside metabolic process `http://purl.obolibrary.org/obo/GO_0045979` + +#### Added +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of nucleoside metabolic process" + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0045979" + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of nucleoside metabolism" + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of nucleoside metabolic process" + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of nucleoside metabolic process" + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of nucleoside metabolic process" + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of nucleoside metabolic process" + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "stimulation of nucleoside metabolic process" + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleosides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- Class: [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116)) + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) SubClassOf [positive regulation of small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0062013) + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) SubClassOf [positive regulation of nucleobase-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0045935) + +- [positive regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0045979) SubClassOf [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) + + +### positive regulation of nucleoside transport `http://purl.obolibrary.org/obo/GO_0032244` + +#### Added +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of nucleoside transport" + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of nucleoside transport" + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of nucleoside transport" + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of nucleoside transport" + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "stimulation of nucleoside transport" + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of nucleoside transport" + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032244" + +- Class: [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858)) + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) SubClassOf [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) SubClassOf [positive regulation of nucleobase-containing compound transport](http://purl.obolibrary.org/obo/GO_0032241) + +- [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) + + +### positive regulation of nucleotide biosynthetic process `http://purl.obolibrary.org/obo/GO_0030810` + +#### Added +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of nucleotide biosynthesis" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of nucleotide biosynthetic process" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0030810" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of nucleotide biosynthetic process" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of nucleotide anabolism" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of nucleotide biosynthetic process" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "stimulation of nucleotide biosynthetic process" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of nucleotide synthesis" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of nucleotide formation" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of nucleotide biosynthetic process" + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of nucleotide biosynthetic process" + +- Class: [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165)) + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) SubClassOf [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) SubClassOf [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) + +- [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) SubClassOf [positive regulation of cellular biosynthetic process](http://purl.obolibrary.org/obo/GO_0031328) + + +### positive regulation of nucleotide catabolic process `http://purl.obolibrary.org/obo/GO_0030813` + +#### Added +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of nucleotide catabolic process" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of nucleotide breakdown" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of nucleotide catabolic process" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of nucleotide catabolic process" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0030813" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of nucleotide catabolism" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of nucleotide catabolic process" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of nucleotide catabolic process" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "stimulation of nucleotide catabolic process" + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of nucleotide degradation" + +- Class: [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166)) + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) SubClassOf [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) SubClassOf [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) SubClassOf [positive regulation of cellular catabolic process](http://purl.obolibrary.org/obo/GO_0031331) + +- [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) + + +### positive regulation of nucleotide metabolic process `http://purl.obolibrary.org/obo/GO_0045981` + +#### Added +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of nucleotide metabolic process" + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of nucleotide metabolic process" + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of nucleotide metabolic process" + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of nucleotide metabolic process" + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0045981" + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "stimulation of nucleotide metabolic process" + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of nucleotide metabolism" + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of nucleotide metabolic process" + +- Class: [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117)) + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) SubClassOf [positive regulation of small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0062013) + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) SubClassOf [positive regulation of phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0045937) + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) SubClassOf [positive regulation of nucleobase-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0045935) + +- [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) SubClassOf [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) + + +### positive regulation of peptidase activity `http://purl.obolibrary.org/obo/GO_0010952` +#### Removed +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that increases the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tb" + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0010952" + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2009-04-27T11:54:32Z" + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of peptidase activity" + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "tb" + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- Class: [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233)) + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) SubClassOf [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [proteolysis](http://purl.obolibrary.org/obo/GO_0006508) + - [IAO_0000233](http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/13926" + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) SubClassOf [positive regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051345) + +- [positive regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0010952) SubClassOf [positive regulation of proteolysis](http://purl.obolibrary.org/obo/GO_0045862) + + + +### positive regulation of protein binding `http://purl.obolibrary.org/obo/GO_0032092` +#### Removed +- [positive regulation of protein binding](http://purl.obolibrary.org/obo/GO_0032092) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of protein binding](http://purl.obolibrary.org/obo/GO_0032092) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of protein kinase activity `http://purl.obolibrary.org/obo/GO_0045860` +#### Removed +- [positive regulation of protein kinase activity](http://purl.obolibrary.org/obo/GO_0045860) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of protein kinase activity](http://purl.obolibrary.org/obo/GO_0045860) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of protein serine/threonine kinase activity `http://purl.obolibrary.org/obo/GO_0071902` +#### Removed +- [positive regulation of protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0071902) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0071902) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of protein tyrosine kinase activity `http://purl.obolibrary.org/obo/GO_0061098` +#### Removed +- [positive regulation of protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0061098) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0061098) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of purine nucleobase metabolic process `http://purl.obolibrary.org/obo/GO_0045983` + +#### Added +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0045983" + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving purine bases." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of purine base metabolism" + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of purine base metabolic process" + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "stimulation of purine base metabolic process" + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of purine base metabolic process" + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of purine base metabolic process" + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of purine base metabolic process" + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of purine base metabolic process" + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of purine nucleobase metabolic process" + +- Class: [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144)) + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) SubClassOf [positive regulation of nucleobase-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0045935) + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) SubClassOf [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) + +- [positive regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0045983) SubClassOf [positive regulation of small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0062013) + + +### positive regulation of purine nucleoside transport `http://purl.obolibrary.org/obo/GO_0032248` + +#### Added +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of purine nucleoside transport" + +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of purine nucleoside transport" + +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of purine nucleoside transport" + +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032248" + +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of purine nucleoside transport" + +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "stimulation of purine nucleoside transport" + +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of purine nucleoside transport" + +- Class: [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) + +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) SubClassOf [positive regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032244) + +- [positive regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032248) SubClassOf [regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032245) + + +### positive regulation of purine nucleotide biosynthetic process `http://purl.obolibrary.org/obo/GO_1900373` + +#### Added +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of purine nucleotide formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of purine nucleotide anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of purine nucleotide biosynthetic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of purine nucleotide anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of purine nucleotide biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-04-17T12:32:37Z" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "activation of purine nucleotide formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of purine nucleotide anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of purine nucleotide biosynthetic processes." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of purine nucleotide biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "activation of purine nucleotide biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of purine nucleotide synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of purine nucleotide biosynthetic process" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of purine nucleotide biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of purine nucleotide biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of purine nucleotide formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of purine nucleotide synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "activation of purine nucleotide anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of purine nucleotide synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1900373" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of purine nucleotide anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of purine nucleotide biosynthetic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of purine nucleotide formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of purine nucleotide formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "activation of purine nucleotide synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of purine nucleotide biosynthetic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "krc" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of purine nucleotide biosynthetic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of purine nucleotide synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- Class: [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164)) + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) SubClassOf [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) SubClassOf [positive regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030810) + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) + +- [positive regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900373) SubClassOf [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) + + +### positive regulation of purine nucleotide catabolic process `http://purl.obolibrary.org/obo/GO_0033123` + +#### Added +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of purine nucleotide degradation" + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0033123" + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of purine nucleotide catabolic process" + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of purine nucleotide breakdown" + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of purine nucleotide catabolism" + +- Class: [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195)) + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) SubClassOf [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) SubClassOf [positive regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030813) + +- [positive regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033123) SubClassOf [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) + + +### positive regulation of purine nucleotide metabolic process `http://purl.obolibrary.org/obo/GO_1900544` + +#### Added +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "positive regulation of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of purine nucleotide metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of purine nucleotide metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that activates or increases the frequency, rate or extent of purine nucleotide metabolic process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up-regulation of purine nucleotide metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "up regulation of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "positive regulation of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "upregulation of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "positive regulation of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [label](http://www.w3.org/2000/01/rdf-schema#label) "positive regulation of purine nucleotide metabolic process" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-05-11T05:44:43Z" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "up regulation of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "upregulation of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "krc" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "up-regulation of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "upregulation of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1900544" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "up-regulation of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "activation of purine nucleotide metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "up regulation of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + +- Class: [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163)) + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) SubClassOf [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) SubClassOf [positively regulates](http://purl.obolibrary.org/obo/RO_0002213) some [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) + +- [positive regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900544) SubClassOf [positive regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0045981) + + +### positive regulation of receptor binding `http://purl.obolibrary.org/obo/GO_1900122` +#### Removed +- [positive regulation of receptor binding](http://purl.obolibrary.org/obo/GO_1900122) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of receptor binding](http://purl.obolibrary.org/obo/GO_1900122) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of signaling receptor activity `http://purl.obolibrary.org/obo/GO_2000273` +#### Removed +- [positive regulation of signaling receptor activity](http://purl.obolibrary.org/obo/GO_2000273) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of signaling receptor activity](http://purl.obolibrary.org/obo/GO_2000273) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of sodium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_2000651` +#### Removed +- [positive regulation of sodium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_2000651) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of sodium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_2000651) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of transferase activity `http://purl.obolibrary.org/obo/GO_0051347` +#### Removed +- [positive regulation of transferase activity](http://purl.obolibrary.org/obo/GO_0051347) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of transferase activity](http://purl.obolibrary.org/obo/GO_0051347) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### positive regulation of transporter activity `http://purl.obolibrary.org/obo/GO_0032411` +#### Removed +- [positive regulation of transporter activity](http://purl.obolibrary.org/obo/GO_0032411) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [positive regulation of transporter activity](http://purl.obolibrary.org/obo/GO_0032411) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### preorbital bone region `http://purl.obolibrary.org/obo/UBERON_7500102` + +#### Added +- [preorbital bone region](http://purl.obolibrary.org/obo/UBERON_7500102) SubClassOf [anatomical entity](http://purl.obolibrary.org/obo/UBERON_0001062) + + +### protein phosphorylation `http://purl.obolibrary.org/obo/GO_0006468` +#### Removed +- [protein phosphorylation](http://purl.obolibrary.org/obo/GO_0006468) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [protein phosphorylation](http://purl.obolibrary.org/obo/GO_0006468) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### protein serine/threonine kinase activity `http://purl.obolibrary.org/obo/GO_0004674` +#### Removed +- [protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0004674) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EC:2.7.11.1" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "skos:narrowMatch" + +- [protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0004674) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "protein phosphokinase activity" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EC:2.7.11.1" + +- [protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0004674) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "protein kinase (phosphorylating) activity" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EC:2.7.11.1" + +#### Added +- [protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0004674) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "EC:2.7.11.1" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "skos:exactMatch" + + +### protein tyrosine kinase activity `http://purl.obolibrary.org/obo/GO_0004713` + +#### Added +- [protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0004713) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) + +- [protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0004713) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [CHEBI_82620](http://purl.obolibrary.org/obo/CHEBI_82620) + +- [protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0004713) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [ADP(3-)](http://purl.obolibrary.org/obo/CHEBI_456216) + +- [protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0004713) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) + +- [protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0004713) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [CHEBI_46858](http://purl.obolibrary.org/obo/CHEBI_46858) + + +### protein-phosphatidylethanolamide deconjugating activity `http://purl.obolibrary.org/obo/GO_0019786` +#### Removed +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Atg8-specific protease activity" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "APG8-specific protease activity" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:vw" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [label](http://www.w3.org/2000/01/rdf-schema#label) "Atg8-specific peptidase activity" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A thiol-dependent isopeptidase activity that cleaves APG8 from a target protein to which it is conjugated." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28901328" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "APG8-PE hydrolase" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) SubClassOf [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) SubClassOf [cysteine-type peptidase activity](http://purl.obolibrary.org/obo/GO_0008234) + +#### Added +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [label](http://www.w3.org/2000/01/rdf-schema#label) "protein-phosphatidylethanolamide deconjugating activity" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "ATG8-PE deconjugation activity" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "skos:narrowMatch" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the reaction: [protein]-C-terminal L-amino acid-glycyl-phosphatidylethanolamide + H2O = [protein]-C-terminal L-amino acid-glycine + a 1,2-diacyl-sn-glycero-3-phosphoethanolamine. An example of this reaction is the removal of ATG8 from membranes to which it is covalently linked to a phosphatidylethanolamid via its terminal glycine residue." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28330855" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22240591" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:2882172" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:22652539" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28901328" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "APG8-specific protease activity" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:vw" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Atg8-specific protease activity" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "skos:narrowMatch" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "ATG8-PE hydrolase activity" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "skos:narrowMatch" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/25472"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "APG8-PE hydrolase" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "skos:narrowMatch" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "Atg8-specific peptidase activity" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "skos:narrowMatch" + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) SubClassOf [hydrolase activity](http://purl.obolibrary.org/obo/GO_0016787) + +- [protein-phosphatidylethanolamide deconjugating activity](http://purl.obolibrary.org/obo/GO_0019786) SubClassOf [catalytic activity, acting on a protein](http://purl.obolibrary.org/obo/GO_0140096) + + +### proximal to `http://purl.obolibrary.org/obo/BSPO_0000100` + +#### Added +- [proximal to](http://purl.obolibrary.org/obo/BSPO_0000100) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C25236" + + +### pulmonary lymphatic vessel `http://purl.obolibrary.org/obo/UBERON_0018227` + +#### Added +- [pulmonary lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0018227) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [respiratory system lymphatic vessel endothelium](http://purl.obolibrary.org/obo/UBERON_0003529) + +- [pulmonary lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0018227) SubClassOf [protein-containing material entity](http://purl.obolibrary.org/obo/PR_000050567) + + +### pulmonary part of lymphatic system `http://purl.obolibrary.org/obo/UBERON_0018226` + +#### Added +- [pulmonary part of lymphatic system](http://purl.obolibrary.org/obo/UBERON_0018226) SubClassOf [protein-containing material entity](http://purl.obolibrary.org/obo/PR_000050567) + + +### purine `http://purl.obolibrary.org/obo/CHEBI_35584` + +#### Added +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C15587" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [mass](http://purl.obolibrary.org/obo/chebi/mass) "120.112" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" + + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HMDB:HMDB0001366" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24088627" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H4N4" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:12865945" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "Europe PMC" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "120.04360" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:35584" + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A heterobicyclic aromatic organic compound comprising a pyrimidine ring fused to an imidazole ring; the parent compound of the purines." + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:PURINE" + +- Class: [purine](http://purl.obolibrary.org/obo/CHEBI_35584) + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) SubClassOf [purines](http://purl.obolibrary.org/obo/CHEBI_26401) + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [fundamental metabolite](http://purl.obolibrary.org/obo/CHEBI_78675) + +- [purine](http://purl.obolibrary.org/obo/CHEBI_35584) SubClassOf [mancude organic heterobicyclic parent](http://purl.obolibrary.org/obo/CHEBI_35570) + + +### purine nucleobase `http://purl.obolibrary.org/obo/CHEBI_26386` + +#### Added +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine nucleobases" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleobase" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "C1(NC(=NC=2NC=NC12)*)=*" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A nucleobase whose skeleton is derived from purine." + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C15587" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H3N4R2" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [mass](http://purl.obolibrary.org/obo/chebi/mass) "119.104" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "119.03577" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine bases" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26386" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "a purine nucleobase" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleobase" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- Class: [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) SubClassOf [nucleobase](http://purl.obolibrary.org/obo/CHEBI_18282) + +- [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) SubClassOf [purines](http://purl.obolibrary.org/obo/CHEBI_26401) + + +### purine nucleobase binding `http://purl.obolibrary.org/obo/GO_0002060` + +#### Added +- [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0002060" + +- [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleobase binding" + +- [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" + +- [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to a purine nucleobase, an organic nitrogenous base with a purine skeleton." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:hjd" + +- [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base binding" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine binding" + +- Class: [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) + +- [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386)) + +- [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) + +- [purine nucleobase binding](http://purl.obolibrary.org/obo/GO_0002060) SubClassOf [nucleobase binding](http://purl.obolibrary.org/obo/GO_0002054) + + +### purine nucleobase biosynthetic process `http://purl.obolibrary.org/obo/GO_0009113` + +#### Added +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base anabolism" + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009113" + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:PWY-841" + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base biosynthetic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base synthesis" + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleobase biosynthetic process" + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base formation" + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base biosynthesis" + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- Class: [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386)) + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) SubClassOf [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) SubClassOf [nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0046112) + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) + +- [purine nucleobase biosynthetic process](http://purl.obolibrary.org/obo/GO_0009113) SubClassOf [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) + + +### purine nucleobase catabolic process `http://purl.obolibrary.org/obo/GO_0006145` + +#### Added +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base catabolism" + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base breakdown" + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base catabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006145" + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base degradation" + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleobase catabolic process" + +- Class: [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386)) + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) SubClassOf [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) SubClassOf [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) + +- [purine nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0006145) SubClassOf [nucleobase catabolic process](http://purl.obolibrary.org/obo/GO_0046113) + + +### purine nucleobase metabolic process `http://purl.obolibrary.org/obo/GO_0006144` + +#### Added +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base metabolism" + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "purine metabolism" + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "purine metabolic process" + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006144" + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleobase metabolic process" + +- Class: [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386)) + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) SubClassOf [nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0009112) + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) SubClassOf [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) + +- [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) + + +### purine nucleobase transmembrane transport `http://purl.obolibrary.org/obo/GO_1904823` + +#### Added +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2015-11-19T09:07:56Z" + +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The process in which a purine nucleobase is transported across a membrane." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000069" + +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1904823" + +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" + +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleobase transmembrane transport" + +- Class: [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) + +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386)) + +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) SubClassOf [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) + +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) SubClassOf [results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020) + +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) SubClassOf [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) + +- [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) + + +### purine nucleobase transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0005345` + +#### Added +- [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleobase transmembrane transporter activity" + +- [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine transmembrane transporter activity" + +- [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" + +- [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base transmembrane transporter activity" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0005345" + +- [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from one side of a membrane to the other." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- Class: [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) + +- [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386)) + +- [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [purine nucleobase transmembrane transport](http://purl.obolibrary.org/obo/GO_1904823) + +- [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) SubClassOf [nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015205) + +- [purine nucleobase transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005345) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) + + +### purine nucleobase transport `http://purl.obolibrary.org/obo/GO_0006863` + +#### Added +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine transmembrane transport" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006863" + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0015852" + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base transport" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine transport" + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine base transmembrane transport" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleobase transport" + +- Class: [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386)) + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) + +- [purine nucleobase transport](http://purl.obolibrary.org/obo/GO_0006863) SubClassOf [nucleobase transport](http://purl.obolibrary.org/obo/GO_0015851) + + +### purine nucleoside `http://purl.obolibrary.org/obo/CHEBI_26394` + +#### Added +- [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine nucleosides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside" + +- [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26394" + +- Class: [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) + +- [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) SubClassOf [purines](http://purl.obolibrary.org/obo/CHEBI_26401) + +- [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) SubClassOf [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) + + +### purine nucleoside binding `http://purl.obolibrary.org/obo/GO_0001883` + +#### Added +- [purine nucleoside binding](http://purl.obolibrary.org/obo/GO_0001883) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to a purine nucleoside, a compound consisting of a purine base linked either to ribose or deoxyribose." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:hjd" + +- [purine nucleoside binding](http://purl.obolibrary.org/obo/GO_0001883) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0001883" + +- [purine nucleoside binding](http://purl.obolibrary.org/obo/GO_0001883) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" + +- [purine nucleoside binding](http://purl.obolibrary.org/obo/GO_0001883) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside binding" + +- Class: [purine nucleoside binding](http://purl.obolibrary.org/obo/GO_0001883) + +- [purine nucleoside binding](http://purl.obolibrary.org/obo/GO_0001883) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394)) + +- [purine nucleoside binding](http://purl.obolibrary.org/obo/GO_0001883) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) + +- [purine nucleoside binding](http://purl.obolibrary.org/obo/GO_0001883) SubClassOf [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) + + +### purine nucleoside biosynthetic process `http://purl.obolibrary.org/obo/GO_0042451` + +#### Added +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of any purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside formation" + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside synthesis" + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0042451" + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside biosynthesis" + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside biosynthetic process" + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside anabolism" + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- Class: [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394)) + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) SubClassOf [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) SubClassOf [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) + +- [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) SubClassOf [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) + + +### purine nucleoside catabolic process `http://purl.obolibrary.org/obo/GO_0006152` + +#### Added +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside catabolic process" + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside breakdown" + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside degradation" + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside catabolism" + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006152" + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- Class: [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394)) + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) SubClassOf [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) SubClassOf [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) SubClassOf [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) + +- [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) + + +### purine nucleoside diphosphate `http://purl.obolibrary.org/obo/CHEBI_26391` + +#### Added +- [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside diphosphate" + +- [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine nucleoside diphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26391" + +- [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- Class: [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) + +- [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) SubClassOf [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) + + +### purine nucleoside diphosphate biosynthetic process `http://purl.obolibrary.org/obo/GO_0009136` + +#### Added +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside diphosphate anabolism" + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside diphosphate biosynthetic process" + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009136" + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside diphosphate formation" + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside diphosphate biosynthesis" + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside diphosphate synthesis" + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- Class: [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391)) + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) SubClassOf [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) + +- [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) SubClassOf [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) + + +### purine nucleoside diphosphate catabolic process `http://purl.obolibrary.org/obo/GO_0009137` + +#### Added +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside diphosphate degradation" + +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009137" + +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside diphosphate catabolic process" + +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside diphosphate breakdown" + +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside diphosphate catabolism" + +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- Class: [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) + +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391)) + +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) SubClassOf [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) + +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) SubClassOf [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) + +- [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) + + +### purine nucleoside diphosphate metabolic process `http://purl.obolibrary.org/obo/GO_0009135` + +#### Added +- [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009135" + +- [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside diphosphate metabolism" + +- [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside diphosphate metabolic process" + +- [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- Class: [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) + +- [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391)) + +- [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) + +- [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) SubClassOf [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) + + +### purine nucleoside metabolic process `http://purl.obolibrary.org/obo/GO_0042278` + +#### Added +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0042278" + +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside metabolism" + +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "purine metabolism" + +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside)." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:jl" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0140512713" + +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "purine metabolic process" + +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside metabolic process" + +- Class: [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) + +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394)) + +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) SubClassOf [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) + +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) SubClassOf [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) + +- [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) + + +### purine nucleoside transmembrane transport `http://purl.obolibrary.org/obo/GO_0015860` + +#### Added +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "purine nucleoside transport" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:vw" + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0035427" + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside membrane transport" + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Note that this term is not intended for use in annotating lateral movement within membranes." + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The process in which a purine nucleoside is transported across a membrane. A purine nucleoside is a purine base covalently bonded to a ribose or deoxyribose sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:vw" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside transmembrane transport" + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015860" + +- Class: [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394)) + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) SubClassOf [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) SubClassOf [nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_1901642) + +- [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) SubClassOf [results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020) + + +### purine nucleoside transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015211` + +#### Added +- [purine nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015211) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of a purine nucleoside, a purine base covalently bonded to a ribose or deoxyribose sugar, from one side of a membrane to the other." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" + +- [purine nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015211) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside transmembrane transporter activity" + +- [purine nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015211) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" + +- [purine nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015211) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015211" + +- Class: [purine nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015211) + +- [purine nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015211) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394)) + +- [purine nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015211) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) + +- [purine nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015211) SubClassOf [nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005337) + +- [purine nucleoside transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015211) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [purine nucleoside transmembrane transport](http://purl.obolibrary.org/obo/GO_0015860) + - [source](http://www.geneontology.org/formats/oboInOwl#http://purl.org/dc/terms/source) "GO_REF:0000090" + + +### purine nucleoside triphosphate `http://purl.obolibrary.org/obo/CHEBI_26393` + +#### Added +- [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine nucleoside triphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26393" + +- [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside triphosphate" + +- [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- Class: [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) + +- [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) SubClassOf [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) + + +### purine nucleoside triphosphate biosynthetic process `http://purl.obolibrary.org/obo/GO_0009145` + +#### Added +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside triphosphate synthesis" + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside triphosphate formation" + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009145" + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside triphosphate anabolism" + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside triphosphate biosynthetic process" + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside triphosphate biosynthesis" + +- Class: [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393)) + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) SubClassOf [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) + +- [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) SubClassOf [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) + + +### purine nucleoside triphosphate catabolic process `http://purl.obolibrary.org/obo/GO_0009146` + +#### Added +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside triphosphate breakdown" + +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside triphosphate degradation" + +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009146" + +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside triphosphate catabolism" + +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside triphosphate catabolic process" + +- Class: [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) + +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393)) + +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) + +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) SubClassOf [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) + +- [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) SubClassOf [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) + + +### purine nucleoside triphosphate metabolic process `http://purl.obolibrary.org/obo/GO_0009144` + +#### Added +- [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009144" + +- [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleoside triphosphate metabolic process" + +- [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleoside triphosphate metabolism" + +- [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- Class: [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) + +- [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393)) + +- [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) + +- [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) SubClassOf [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) + + +### purine nucleotide `http://purl.obolibrary.org/obo/CHEBI_26395` + +#### Added +- [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26395" + +- [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any nucleotide that has a purine nucleobase." + +- [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleotide" + +- [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine nucleotides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- Class: [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) + +- [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) SubClassOf [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) + +- [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) SubClassOf [purines](http://purl.obolibrary.org/obo/CHEBI_26401) + + +### purine nucleotide binding `http://purl.obolibrary.org/obo/GO_0017076` + +#### Added +- [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to a purine nucleotide, a compound consisting of a purine nucleoside esterified with (ortho)phosphate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" + +- [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleotide binding" + +- [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0017076" + +- [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" + +- Class: [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) + +- [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395)) + +- [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) + +- [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) SubClassOf [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) + + +### purine nucleotide biosynthetic process `http://purl.obolibrary.org/obo/GO_0006164` + +#### Added +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006164" + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleotide synthesis" + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleotide anabolism" + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleotide formation" + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MetaCyc:DENOVOPURINE2-PWY" + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleotide biosynthesis" + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleotide biosynthetic process" + +- Class: [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395)) + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) SubClassOf [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) SubClassOf [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) SubClassOf [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) + +- [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) + + +### purine nucleotide catabolic process `http://purl.obolibrary.org/obo/GO_0006195` + +#### Added +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleotide catabolism" + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleotide catabolic process" + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleotide degradation" + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleotide breakdown" + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006195" + +- Class: [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395)) + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) SubClassOf [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) SubClassOf [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) + +- [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) SubClassOf [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) + + +### purine nucleotide metabolic process `http://purl.obolibrary.org/obo/GO_0006163` + +#### Added +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "purine metabolism" + +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine nucleotide metabolism" + +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006163" + +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "purine metabolic process" + +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleotide metabolic process" + +- Class: [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) + +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395)) + +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) + +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) SubClassOf [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) + +- [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) SubClassOf [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) + + +### purine nucleotide transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015216` + +#### Added +- [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015216" + +- [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of a purine nucleotide, any compound consisting of a purine nucleoside esterified with (ortho)phosphate, from one side of a membrane to the other." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" + +- [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleotide transmembrane transporter activity" + +- [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" + +- Class: [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) + +- [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395)) + +- [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) SubClassOf [nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015215) + +- [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) + +- [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) + + +### purine nucleotide transport `http://purl.obolibrary.org/obo/GO_0015865` + +#### Added +- [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine nucleotide transport" + +- [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015865" + +- [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of a purine nucleotide, any compound consisting of a purine nucleoside esterified with (ortho)phosphate, into, out of or within a cell." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" + +- Class: [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) + +- [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395)) + +- [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) SubClassOf [nucleotide transport](http://purl.obolibrary.org/obo/GO_0006862) + +- [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) + + +### purine ribonucleoside `http://purl.obolibrary.org/obo/CHEBI_26399` + +#### Added +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26399" + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "*[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O" + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside" + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ribonucleoside that has a purine moiety as the nucleobase (the R group in the illustration)." + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [mass](http://purl.obolibrary.org/obo/chebi/mass) "133.123" + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine ribonucleosides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "133.05008" + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H9O4R" + +- Class: [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) SubClassOf [purine nucleoside](http://purl.obolibrary.org/obo/CHEBI_26394) + +- [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) SubClassOf [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) + + +### purine ribonucleoside 5'-diphosphate `http://purl.obolibrary.org/obo/CHEBI_37038` + +#### Added +- [purine ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37038) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:37038" + +- [purine ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37038) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [purine ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37038) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside 5'-diphosphate" + +- [purine ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37038) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [purine ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37038) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine ribonucleoside 5'-diphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- Class: [purine ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37038) + +- [purine ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37038) SubClassOf [ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37075) + +- [purine ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37038) SubClassOf [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) + +- [purine ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37038) SubClassOf [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) + + +### purine ribonucleoside 5'-triphosphate `http://purl.obolibrary.org/obo/CHEBI_37045` + +#### Added +- [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside 5'-triphosphate" + +- [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:37045" + +- [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine ribonucleoside 5'-triphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- Class: [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) + +- [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) SubClassOf [ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37076) + +- [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) SubClassOf [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) + +- [purine ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37045) SubClassOf [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) + + +### purine ribonucleoside binding `http://purl.obolibrary.org/obo/GO_0032550` + +#### Added +- [purine ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032550) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" + +- [purine ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032550) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to a purine ribonucleoside, a compound consisting of a purine base linked to ribose." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032550) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside binding" + +- [purine ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032550) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032550" + +- Class: [purine ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032550) + +- [purine ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032550) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399)) + +- [purine ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032550) SubClassOf [purine nucleoside binding](http://purl.obolibrary.org/obo/GO_0001883) + +- [purine ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032550) SubClassOf [ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032549) + +- [purine ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032550) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) + + +### purine ribonucleoside biosynthetic process `http://purl.obolibrary.org/obo/GO_0046129` + +#### Added +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside synthesis" + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside biosynthetic process" + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside anabolism" + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside biosynthesis" + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046129" + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside formation" + +- Class: [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399)) + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) SubClassOf [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) SubClassOf [purine nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042451) + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) SubClassOf [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) + +- [purine ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0046129) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) + + +### purine ribonucleoside catabolic process `http://purl.obolibrary.org/obo/GO_0046130` + +#### Added +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046130" + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside degradation" + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside catabolism" + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside breakdown" + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside catabolic process" + +- Class: [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399)) + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) SubClassOf [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) SubClassOf [purine nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0006152) + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) + +- [purine ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0046130) SubClassOf [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) + + +### purine ribonucleoside diphosphate `http://purl.obolibrary.org/obo/CHEBI_26396` + +#### Added +- [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine ribonucleoside diphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside diphosphate" + +- [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26396" + +- Class: [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) + +- [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) SubClassOf [purine nucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26391) + +- [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) SubClassOf [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) + + +### purine ribonucleoside diphosphate biosynthetic process `http://purl.obolibrary.org/obo/GO_0009180` + +#### Added +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside diphosphate formation" + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside diphosphate biosynthetic process" + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside diphosphate biosynthesis" + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside diphosphate anabolism" + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside diphosphate synthesis" + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009180" + +- Class: [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396)) + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) SubClassOf [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) SubClassOf [purine nucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009136) + +- [purine ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009180) SubClassOf [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) + + +### purine ribonucleoside diphosphate catabolic process `http://purl.obolibrary.org/obo/GO_0009181` + +#### Added +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside diphosphate catabolism" + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside diphosphate breakdown" + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside diphosphate catabolic process" + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009181" + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside diphosphate degradation" + +- Class: [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396)) + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) SubClassOf [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) SubClassOf [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) + +- [purine ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009181) SubClassOf [purine nucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009137) + + +### purine ribonucleoside diphosphate metabolic process `http://purl.obolibrary.org/obo/GO_0009179` + +#### Added +- [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside diphosphate metabolic process" + +- [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009179" + +- [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside diphosphate metabolism" + +- Class: [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) + +- [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396)) + +- [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_26396) + +- [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) SubClassOf [purine nucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009135) + +- [purine ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009179) SubClassOf [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) + + +### purine ribonucleoside metabolic process `http://purl.obolibrary.org/obo/GO_0046128` + +#### Added +- [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside metabolic process" + +- [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" + +- [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046128" + +- [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside metabolism" + +- Class: [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) + +- [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399)) + +- [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) SubClassOf [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) + +- [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) + +- [purine ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0046128) SubClassOf [purine nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0042278) + + +### purine ribonucleoside triphosphate `http://purl.obolibrary.org/obo/CHEBI_26398` + +#### Added +- [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside triphosphate" + +- [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26398" + +- [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine ribonucleoside triphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- Class: [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) + +- [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) SubClassOf [purine nucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26393) + +- [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) SubClassOf [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) + + +### purine ribonucleoside triphosphate binding `http://purl.obolibrary.org/obo/GO_0035639` + +#### Added +- [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" + +- [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0035639" + +- [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" + +- [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-01-14T02:46:42Z" + +- [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to a purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ebc" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:BHF" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside triphosphate binding" + +- [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "purine NTP binding" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ebc" + +- Class: [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) + +- [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398)) + +- [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) SubClassOf [nucleoside phosphate binding](http://purl.obolibrary.org/obo/GO_1901265) + +- [purine ribonucleoside triphosphate binding](http://purl.obolibrary.org/obo/GO_0035639) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) + + +### purine ribonucleoside triphosphate biosynthetic process `http://purl.obolibrary.org/obo/GO_0009206` + +#### Added +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside triphosphate formation" + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside triphosphate anabolism" + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009206" + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside triphosphate synthesis" + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside triphosphate biosynthetic process" + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside triphosphate biosynthesis" + +- Class: [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398)) + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) SubClassOf [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) SubClassOf [purine nucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009145) + +- [purine ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009206) SubClassOf [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) + + +### purine ribonucleoside triphosphate catabolic process `http://purl.obolibrary.org/obo/GO_0009207` + +#### Added +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside triphosphate catabolism" + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside triphosphate degradation" + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside triphosphate breakdown" + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009207" + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside triphosphate catabolic process" + +- Class: [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398)) + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) SubClassOf [purine nucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009146) + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) SubClassOf [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) + +- [purine ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009207) SubClassOf [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) + + +### purine ribonucleoside triphosphate metabolic process `http://purl.obolibrary.org/obo/GO_0009205` + +#### Added +- [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009205" + +- [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleoside triphosphate metabolism" + +- [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleoside triphosphate metabolic process" + +- [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- Class: [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) + +- [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398)) + +- [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) SubClassOf [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) + +- [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_26398) + +- [purine ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009205) SubClassOf [purine nucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009144) + + +### purine ribonucleotide `http://purl.obolibrary.org/obo/CHEBI_26400` + +#### Added +- [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26400" + +- [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any ribonucleotide that has a purine nucleobase." + +- [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) + +- [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleotide" + +- [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purine ribonucleotides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" + +- [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" + +- Class: [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) + +- [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) SubClassOf [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) + +- [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) SubClassOf [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) + + +### purine ribonucleotide binding `http://purl.obolibrary.org/obo/GO_0032555` + +#### Added +- [purine ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032555) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032555" + +- [purine ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032555) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" + +- [purine ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032555) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleotide binding" + +- [purine ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032555) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to a purine ribonucleotide, any compound consisting of a purine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- Class: [purine ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032555) + +- [purine ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032555) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400)) + +- [purine ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032555) SubClassOf [ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032553) + +- [purine ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032555) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) + +- [purine ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032555) SubClassOf [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) + + +### purine ribonucleotide biosynthetic process `http://purl.obolibrary.org/obo/GO_0009152` + +#### Added +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleotide synthesis" + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleotide formation" + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleotide anabolism" + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleotide biosynthesis" + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009152" + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleotide biosynthetic process" + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- Class: [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400)) + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) SubClassOf [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) SubClassOf [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) + +- [purine ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009152) SubClassOf [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) + + +### purine ribonucleotide catabolic process `http://purl.obolibrary.org/obo/GO_0009154` + +#### Added +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleotide catabolism" + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleotide breakdown" + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009154" + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleotide catabolic process" + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleotide degradation" + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- Class: [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400)) + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) SubClassOf [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) SubClassOf [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) + +- [purine ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009154) SubClassOf [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) + + +### purine ribonucleotide metabolic process `http://purl.obolibrary.org/obo/GO_0009150` + +#### Added +- [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009150" + +- [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleotide metabolic process" + +- [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine ribonucleotide metabolism" + +- [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" + +- [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- Class: [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) + +- [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400)) + +- [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) SubClassOf [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) + +- [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) + +- [purine ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009150) SubClassOf [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) + + +### purine ribonucleotide transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0005346` + +#### Added +- [purine ribonucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005346) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0005346" + +- [purine ribonucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005346) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleotide transmembrane transporter activity" + +- [purine ribonucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005346) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Enables the transfer of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, from one side of a membrane to the other." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" + +- [purine ribonucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005346) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" + +- Class: [purine ribonucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005346) + +- [purine ribonucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005346) EquivalentTo [transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022857) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400)) + +- [purine ribonucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005346) SubClassOf [carbohydrate derivative transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901505) + +- [purine ribonucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005346) SubClassOf [purine nucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015216) + +- [purine ribonucleotide transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0005346) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) + + +### purine ribonucleotide transport `http://purl.obolibrary.org/obo/GO_0015868` + +#### Added +- [purine ribonucleotide transport](http://purl.obolibrary.org/obo/GO_0015868) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The directed movement of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, into, out of or within a cell." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" + +- [purine ribonucleotide transport](http://purl.obolibrary.org/obo/GO_0015868) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0015868" + +- [purine ribonucleotide transport](http://purl.obolibrary.org/obo/GO_0015868) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine ribonucleotide transport" + +- [purine ribonucleotide transport](http://purl.obolibrary.org/obo/GO_0015868) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- Class: [purine ribonucleotide transport](http://purl.obolibrary.org/obo/GO_0015868) + +- [purine ribonucleotide transport](http://purl.obolibrary.org/obo/GO_0015868) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400)) + +- [purine ribonucleotide transport](http://purl.obolibrary.org/obo/GO_0015868) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purine ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26400) + +- [purine ribonucleotide transport](http://purl.obolibrary.org/obo/GO_0015868) SubClassOf [carbohydrate derivative transport](http://purl.obolibrary.org/obo/GO_1901264) + +- [purine ribonucleotide transport](http://purl.obolibrary.org/obo/GO_0015868) SubClassOf [purine nucleotide transport](http://purl.obolibrary.org/obo/GO_0015865) + + +### purine-containing compound biosynthetic process `http://purl.obolibrary.org/obo/GO_0072522` + +#### Added +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine and derivative biosynthetic process" + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine-containing compound biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine-containing compound biosynthetic process" + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0072522" + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine-containing compound formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "mah" + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-01-04T03:15:29Z" + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine-containing compound synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine-containing compound anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- Class: [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purines](http://purl.obolibrary.org/obo/CHEBI_26401)) + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) SubClassOf [organonitrogen compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901566) + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) SubClassOf [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) SubClassOf [organic cyclic compound biosynthetic process](http://purl.obolibrary.org/obo/GO_1901362) + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) SubClassOf [heterocycle biosynthetic process](http://purl.obolibrary.org/obo/GO_0018130) + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) SubClassOf [aromatic compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0019438) + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) SubClassOf [cellular nitrogen compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0044271) + +- [purine-containing compound biosynthetic process](http://purl.obolibrary.org/obo/GO_0072522) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [purines](http://purl.obolibrary.org/obo/CHEBI_26401) + + +### purine-containing compound catabolic process `http://purl.obolibrary.org/obo/GO_0072523` + +#### Added +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine-containing compound breakdown" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine and derivative catabolic process" + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine-containing compound catabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "mah" + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0072523" + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-01-04T03:17:20Z" + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine-containing compound degradation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine-containing compound catabolic process" + +- Class: [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purines](http://purl.obolibrary.org/obo/CHEBI_26401)) + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) SubClassOf [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) SubClassOf [organonitrogen compound catabolic process](http://purl.obolibrary.org/obo/GO_1901565) + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) SubClassOf [cellular nitrogen compound catabolic process](http://purl.obolibrary.org/obo/GO_0044270) + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) SubClassOf [aromatic compound catabolic process](http://purl.obolibrary.org/obo/GO_0019439) + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) SubClassOf [organic cyclic compound catabolic process](http://purl.obolibrary.org/obo/GO_1901361) + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purines](http://purl.obolibrary.org/obo/CHEBI_26401) + +- [purine-containing compound catabolic process](http://purl.obolibrary.org/obo/GO_0072523) SubClassOf [heterocycle catabolic process](http://purl.obolibrary.org/obo/GO_0046700) + + +### purine-containing compound metabolic process `http://purl.obolibrary.org/obo/GO_0072521` + +#### Added +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine and derivative metabolic process" + +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine-containing compound metabolic process" + +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine-containing compound metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0072521" + +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "mah" + +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-01-04T03:03:59Z" + +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- Class: [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) + +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purines](http://purl.obolibrary.org/obo/CHEBI_26401)) +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) SubClassOf [cellular aromatic compound metabolic process](http://purl.obolibrary.org/obo/GO_0006725) -### regulation of protein serine/threonine kinase activity `http://purl.obolibrary.org/obo/GO_0071900` +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) SubClassOf [cellular nitrogen compound metabolic process](http://purl.obolibrary.org/obo/GO_0034641) -#### Added -- [regulation of protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0071900) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) SubClassOf [organic cyclic compound metabolic process](http://purl.obolibrary.org/obo/GO_1901360) +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [purines](http://purl.obolibrary.org/obo/CHEBI_26401) -### regulation of protein tyrosine kinase activity `http://purl.obolibrary.org/obo/GO_0061097` +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) SubClassOf [organonitrogen compound metabolic process](http://purl.obolibrary.org/obo/GO_1901564) -#### Added -- [regulation of protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0061097) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [purine-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0072521) SubClassOf [heterocycle metabolic process](http://purl.obolibrary.org/obo/GO_0046483) -### regulation of receptor binding `http://purl.obolibrary.org/obo/GO_1900120` +### purine-containing compound transmembrane transport `http://purl.obolibrary.org/obo/GO_0072530` #### Added -- [regulation of receptor binding](http://purl.obolibrary.org/obo/GO_1900120) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0072530" +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) [label](http://www.w3.org/2000/01/rdf-schema#label) "purine-containing compound transmembrane transport" -### regulation of signaling receptor activity `http://purl.obolibrary.org/obo/GO_0010469` +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-01-05T01:45:14Z" -#### Added -- [regulation of signaling receptor activity](http://purl.obolibrary.org/obo/GO_0010469) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "mah" +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purine-containing compound membrane transport" -### regulation of sodium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_2000649` +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Note that this term is not intended for use in annotating lateral movement within membranes." -#### Added -- [regulation of sodium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_2000649) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The process in which a purine-containing compound is transported across a membrane. A purine-containing compound is any compound that contains purine or a formal derivative thereof." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -### regulation of transferase activity `http://purl.obolibrary.org/obo/GO_0051338` +- Class: [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) -#### Added -- [regulation of transferase activity](http://purl.obolibrary.org/obo/GO_0051338) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) EquivalentTo [transport](http://purl.obolibrary.org/obo/GO_0006810) and ([results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020)) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purines](http://purl.obolibrary.org/obo/CHEBI_26401)) +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) SubClassOf [transmembrane transport](http://purl.obolibrary.org/obo/GO_0055085) -### regulation of transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0022898` +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) SubClassOf [results in transport across](http://purl.obolibrary.org/obo/RO_0002342) some [membrane](http://purl.obolibrary.org/obo/GO_0016020) -#### Added -- [regulation of transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022898) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [purines](http://purl.obolibrary.org/obo/CHEBI_26401) +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) SubClassOf [organic substance transport](http://purl.obolibrary.org/obo/GO_0071702) -### regulation of transporter activity `http://purl.obolibrary.org/obo/GO_0032409` +- [purine-containing compound transmembrane transport](http://purl.obolibrary.org/obo/GO_0072530) SubClassOf [nitrogen compound transport](http://purl.obolibrary.org/obo/GO_0071705) + + +### purinergic nucleotide receptor activity `http://purl.obolibrary.org/obo/GO_0001614` #### Added -- [regulation of transporter activity](http://purl.obolibrary.org/obo/GO_0032409) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [label](http://www.w3.org/2000/01/rdf-schema#label) "purinergic nucleotide receptor activity" +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purinoceptor" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -### renal glomerulus `http://purl.obolibrary.org/obo/UBERON_0000074` +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purinoreceptor" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -#### Added -- [renal glomerulus](http://purl.obolibrary.org/obo/UBERON_0000074) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Combining with a purine nucleotide and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [renal glomerulus](http://purl.obolibrary.org/obo/UBERON_0000074) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:signaling" +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purinergic receptor activity" -### response to epinephrine `http://purl.obolibrary.org/obo/GO_0071871` -#### Removed -- [response to epinephrine](http://purl.obolibrary.org/obo/GO_0071871) SubClassOf [response to catecholamine](http://purl.obolibrary.org/obo/GO_0071869) +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -#### Added -- [response to epinephrine](http://purl.obolibrary.org/obo/GO_0071871) SubClassOf [response to chemical](http://purl.obolibrary.org/obo/GO_0042221) +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2010-10-22T10:57:12Z" +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0001614" -### reticular cell `http://purl.obolibrary.org/obo/CL_0000432` +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "P2 receptor" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -#### Added -- [reticular cell](http://purl.obolibrary.org/obo/CL_0000432) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0035586" -- [reticular cell](http://purl.obolibrary.org/obo/CL_0000432) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" +- Class: [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) -### reticulocyte `http://purl.obolibrary.org/obo/CL_0000558` +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) EquivalentTo [signaling receptor activity](http://purl.obolibrary.org/obo/GO_0038023) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395)) -#### Added -- [reticulocyte](http://purl.obolibrary.org/obo/CL_0000558) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [blood_and_immune_upper_slim](http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim) +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [purine nucleotide](http://purl.obolibrary.org/obo/CHEBI_26395) +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [purine nucleotide binding](http://purl.obolibrary.org/obo/GO_0017076) -### retina horizontal cell `http://purl.obolibrary.org/obo/CL_0000745` +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) SubClassOf [nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0016502) -#### Added -- [retina horizontal cell](http://purl.obolibrary.org/obo/CL_0000745) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- [purinergic nucleotide receptor activity](http://purl.obolibrary.org/obo/GO_0001614) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) -### retinal astrocyte `http://purl.obolibrary.org/obo/CL_4033015` +### purinergic nucleotide receptor signaling pathway `http://purl.obolibrary.org/obo/GO_0035590` #### Added -- [retinal astrocyte](http://purl.obolibrary.org/obo/CL_4033015) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The series of molecular signals initiated by an extracellular purine nucleotide binding to its receptor, and ending with the regulation of a downstream cellular process, e.g. transcription." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:BHF" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -### retinal bipolar neuron `http://purl.obolibrary.org/obo/CL_0000748` +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "P2 receptor signaling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -#### Added -- [retinal bipolar neuron](http://purl.obolibrary.org/obo/CL_0000748) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purinergic receptor signalling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purinergic receptor signaling pathway" +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "purinergic nucleotide receptor signalling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -### retinal blood vessel endothelial cell `http://purl.obolibrary.org/obo/CL_0002585` +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0035587" -#### Added -- [retinal blood vessel endothelial cell](http://purl.obolibrary.org/obo/CL_0002585) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0035590" +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "purinoceptor signaling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:9755289" -### retinal ganglion cell `http://purl.obolibrary.org/obo/CL_0000740` +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [retinal ganglion cell](http://purl.obolibrary.org/obo/CL_0000740) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2010-10-22T11:09:40Z" +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "bf" -### retinal melanocyte `http://purl.obolibrary.org/obo/CL_0002485` +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) [label](http://www.w3.org/2000/01/rdf-schema#label) "purinergic nucleotide receptor signaling pathway" -#### Added -- [retinal melanocyte](http://purl.obolibrary.org/obo/CL_0002485) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- Class: [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) -- [retinal melanocyte](http://purl.obolibrary.org/obo/CL_0002485) SubClassOf [retinal cell](http://purl.obolibrary.org/obo/CL_0009004) +- [purinergic nucleotide receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0035590) SubClassOf [cell surface receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0007166) -### retinal neural layer `http://purl.obolibrary.org/obo/UBERON_0003902` +### purines `http://purl.obolibrary.org/obo/CHEBI_26401` #### Added -- [retinal neural layer](http://purl.obolibrary.org/obo/UBERON_0003902) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [retinal neural layer](http://purl.obolibrary.org/obo/UBERON_0003902) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A class of imidazopyrimidines that consists of purine and its substituted derivatives." +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5N4R7" -### retinal pigment epithelial cell `http://purl.obolibrary.org/obo/CL_0002586` +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26401" -#### Added -- [retinal pigment epithelial cell](http://purl.obolibrary.org/obo/CL_0002586) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13678" +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "116.01230" -### rib 1 `http://purl.obolibrary.org/obo/UBERON_0004601` +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) [label](http://www.w3.org/2000/01/rdf-schema#label) "purines" -#### Added -- [rib 1](http://purl.obolibrary.org/obo/UBERON_0004601) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) [mass](http://purl.obolibrary.org/obo/chebi/mass) "116.080" + +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" + +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [rib 1](http://purl.obolibrary.org/obo/UBERON_0004601) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [purines](http://purl.obolibrary.org/obo/CHEBI_26401) +- [purines](http://purl.obolibrary.org/obo/CHEBI_26401) SubClassOf [imidazopyrimidine](http://purl.obolibrary.org/obo/CHEBI_35875) -### rib 10 `http://purl.obolibrary.org/obo/UBERON_0004609` + +### purines D-ribonucleoside `http://purl.obolibrary.org/obo/CHEBI_142355` #### Added -- [rib 10](http://purl.obolibrary.org/obo/UBERON_0004609) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [label](http://www.w3.org/2000/01/rdf-schema#label) "purines D-ribonucleoside" -- [rib 10](http://purl.obolibrary.org/obo/UBERON_0004609) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [mass](http://purl.obolibrary.org/obo/chebi/mass) "251.219" +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -### rib 11 `http://purl.obolibrary.org/obo/UBERON_0004610` +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -#### Added -- [rib 11](http://purl.obolibrary.org/obo/UBERON_0004610) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [rib 11](http://purl.obolibrary.org/obo/UBERON_0004610) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A purine ribonucleoside that is a purine derivative attached to a beta-D-ribofuranosyl residue at position 9 via a glycosidic (N-glycosyl) linkage." +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "a purine D-ribonucleoside" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -### rib 12 `http://purl.obolibrary.org/obo/UBERON_0004611` +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C10H11N4O4R2" -#### Added -- [rib 12](http://purl.obolibrary.org/obo/UBERON_0004611) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "251.07803" -- [rib 12](http://purl.obolibrary.org/obo/UBERON_0004611) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:142355" +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "C1(=*)NC(=NC2=C1N=CN2[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)*" -### rib 2 `http://purl.obolibrary.org/obo/UBERON_0004602` +- Class: [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) -#### Added -- [rib 2](http://purl.obolibrary.org/obo/UBERON_0004602) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) SubClassOf [has_functional_parent](http://purl.obolibrary.org/obo/chebi#has_functional_parent) some [purine nucleobase](http://purl.obolibrary.org/obo/CHEBI_26386) + +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) SubClassOf [purine ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_26399) -- [rib 2](http://purl.obolibrary.org/obo/UBERON_0004602) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [purines D-ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_142355) SubClassOf [has_functional_parent](http://purl.obolibrary.org/obo/chebi#has_functional_parent) some [D-ribofuranose](http://purl.obolibrary.org/obo/CHEBI_47013) -### rib 3 `http://purl.obolibrary.org/obo/UBERON_0004603` +### regulation of ATP biosynthetic process `http://purl.obolibrary.org/obo/GO_2001169` #### Added -- [rib 3](http://purl.obolibrary.org/obo/UBERON_0004603) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "regulation of ATP regeneration" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" -- [rib 3](http://purl.obolibrary.org/obo/UBERON_0004603) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "kmv" +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:2001169" -### rib 4 `http://purl.obolibrary.org/obo/UBERON_0004604` +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [rib 4](http://purl.obolibrary.org/obo/UBERON_0004604) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of ATP biosynthetic process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" + +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of ATP synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" + +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of ATP anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" -- [rib 4](http://purl.obolibrary.org/obo/UBERON_0004604) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of ATP formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of ATP biosynthetic process" -### rib 5 `http://purl.obolibrary.org/obo/UBERON_0004605` +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of ATP biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:obol" -#### Added -- [rib 5](http://purl.obolibrary.org/obo/UBERON_0004605) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2011-10-26T03:18:03Z" -- [rib 5](http://purl.obolibrary.org/obo/UBERON_0004605) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754)) -### rib 6 `http://purl.obolibrary.org/obo/UBERON_0004606` +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) SubClassOf [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) -#### Added -- [rib 6](http://purl.obolibrary.org/obo/UBERON_0004606) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_0006754) -- [rib 6](http://purl.obolibrary.org/obo/UBERON_0004606) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of ATP biosynthetic process](http://purl.obolibrary.org/obo/GO_2001169) SubClassOf [regulation of biosynthetic process](http://purl.obolibrary.org/obo/GO_0009889) -### rib 7 `http://purl.obolibrary.org/obo/UBERON_0004607` +### regulation of ATP metabolic process `http://purl.obolibrary.org/obo/GO_1903578` #### Added -- [rib 7](http://purl.obolibrary.org/obo/UBERON_0004607) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of ATP metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [rib 7](http://purl.obolibrary.org/obo/UBERON_0004607) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1903578" +- [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of ATP metabolic process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20695849" -### rib 8 `http://purl.obolibrary.org/obo/UBERON_0010757` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -#### Added -- [rib 8](http://purl.obolibrary.org/obo/UBERON_0010757) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO_REF:0000058" + +- [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "sl" + +- [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of ATP metabolic process" + +- [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2014-10-30T19:04:24Z" + +- Class: [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) + +- [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034)) + +- [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [ATP metabolic process](http://purl.obolibrary.org/obo/GO_0046034) -- [rib 8](http://purl.obolibrary.org/obo/UBERON_0010757) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of ATP metabolic process](http://purl.obolibrary.org/obo/GO_1903578) SubClassOf [regulation of phosphorus metabolic process](http://purl.obolibrary.org/obo/GO_0051174) -### rib 9 `http://purl.obolibrary.org/obo/UBERON_0004608` +### regulation of ATP-dependent activity `http://purl.obolibrary.org/obo/GO_0043462` +#### Removed +- [regulation of ATP-dependent activity](http://purl.obolibrary.org/obo/GO_0043462) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [rib 9](http://purl.obolibrary.org/obo/UBERON_0004608) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of ATP-dependent activity](http://purl.obolibrary.org/obo/GO_0043462) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### regulation of DNA binding `http://purl.obolibrary.org/obo/GO_0051101` +#### Removed +- [regulation of DNA binding](http://purl.obolibrary.org/obo/GO_0051101) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [rib 9](http://purl.obolibrary.org/obo/UBERON_0004608) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [regulation of DNA binding](http://purl.obolibrary.org/obo/GO_0051101) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### right supraclavicular lymph node `http://purl.obolibrary.org/obo/UBERON_8480057` +### regulation of RNA binding `http://purl.obolibrary.org/obo/GO_1905214` +#### Removed +- [regulation of RNA binding](http://purl.obolibrary.org/obo/GO_1905214) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [right supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480057) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [regulation of RNA binding](http://purl.obolibrary.org/obo/GO_1905214) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [right supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480057) [date](http://purl.org/dc/terms/date) "2023-05-11T12:22:02Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) -- [right supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480057) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +### regulation of adenine biosynthetic process `http://purl.obolibrary.org/obo/GO_0061934` -- [right supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480057) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480057" +#### Added +- [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "dph" -- [right supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480057) [label](http://www.w3.org/2000/01/rdf-schema#label) "right supraclavicular lymph node" +- [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [right supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480057) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Supraclavicular lymph node located on the right side of a entire appendicular skeleton. The right supraclavicular lymph node drains the breast, lung and upper esophagus into the right lymphatic duct." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:31335020" +- [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of adenine biosynthetic process" -- Class: [right supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480057) +- [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0061934" -- [right supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_8480057) SubClassOf [supraclavicular lymph node](http://purl.obolibrary.org/obo/UBERON_0035279) +- [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2017-09-05T14:58:46Z" +- [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of an adenine biosynthetic process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:19933844" -### risorius muscle `http://purl.obolibrary.org/obo/UBERON_0008598` +- Class: [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) -#### Added -- [risorius muscle](http://purl.obolibrary.org/obo/UBERON_0008598) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084)) + +- [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) SubClassOf [regulation of cellular biosynthetic process](http://purl.obolibrary.org/obo/GO_0031326) + +- [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) SubClassOf [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) -- [risorius muscle](http://purl.obolibrary.org/obo/UBERON_0008598) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0061934) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [adenine biosynthetic process](http://purl.obolibrary.org/obo/GO_0046084) -### sacral division of spinal cord central canal `http://purl.obolibrary.org/obo/UBERON_0014547` +### regulation of adenosine receptor signaling pathway `http://purl.obolibrary.org/obo/GO_0060167` #### Added -- [sacral division of spinal cord central canal](http://purl.obolibrary.org/obo/UBERON_0014547) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of adenosine receptor signaling pathway" -- [sacral division of spinal cord central canal](http://purl.obolibrary.org/obo/UBERON_0014547) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" +- [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### sacral spinal cord `http://purl.obolibrary.org/obo/UBERON_0005843` +- [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0060167" -#### Added -- [sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0005843) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of adenosine receptor signalling pathway" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- Class: [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) -- [sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0005843) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973)) +- [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) SubClassOf [regulation of G protein-coupled receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0008277) -### sacral spinal cord dorsal column `http://purl.obolibrary.org/obo/UBERON_0005840` +- [regulation of adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0060167) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [G protein-coupled adenosine receptor signaling pathway](http://purl.obolibrary.org/obo/GO_0001973) + + +### regulation of adenosine transport `http://purl.obolibrary.org/obo/GO_0032249` #### Added -- [sacral spinal cord dorsal column](http://purl.obolibrary.org/obo/UBERON_0005840) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032249) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [sacral spinal cord dorsal column](http://purl.obolibrary.org/obo/UBERON_0005840) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032249) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032249" +- [regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032249) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### sacral spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0033939` +- [regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032249) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of adenosine transport" -#### Added -- [sacral spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0033939) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032249) -- [sacral spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0033939) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032249) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238)) +- [regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032249) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [adenosine transport](http://purl.obolibrary.org/obo/GO_0032238) -### sacral spinal cord gray commissure `http://purl.obolibrary.org/obo/UBERON_0031111` +- [regulation of adenosine transport](http://purl.obolibrary.org/obo/GO_0032249) SubClassOf [regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032245) -#### Added -- [sacral spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0031111) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [sacral spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0031111) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### regulation of apolipoprotein binding `http://purl.obolibrary.org/obo/GO_2000656` +#### Removed +- [regulation of apolipoprotein binding](http://purl.obolibrary.org/obo/GO_2000656) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [regulation of apolipoprotein binding](http://purl.obolibrary.org/obo/GO_2000656) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### sacral spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0029503` +### regulation of binding `http://purl.obolibrary.org/obo/GO_0051098` +#### Removed +- [regulation of binding](http://purl.obolibrary.org/obo/GO_0051098) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [sacral spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0029503) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of binding](http://purl.obolibrary.org/obo/GO_0051098) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### regulation of calcium ion binding `http://purl.obolibrary.org/obo/GO_1901876` +#### Removed +- [regulation of calcium ion binding](http://purl.obolibrary.org/obo/GO_1901876) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [sacral spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0029503) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [regulation of calcium ion binding](http://purl.obolibrary.org/obo/GO_1901876) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### sacral spinal cord lateral column `http://purl.obolibrary.org/obo/UBERON_0005848` +### regulation of calcium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1901019` +#### Removed +- [regulation of calcium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901019) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [sacral spinal cord lateral column](http://purl.obolibrary.org/obo/UBERON_0005848) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of calcium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1901019) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### regulation of catalytic activity `http://purl.obolibrary.org/obo/GO_0050790` +#### Removed +- [regulation of catalytic activity](http://purl.obolibrary.org/obo/GO_0050790) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [sacral spinal cord lateral column](http://purl.obolibrary.org/obo/UBERON_0005848) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +#### Added +- [regulation of catalytic activity](http://purl.obolibrary.org/obo/GO_0050790) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### sacral spinal cord lateral horn `http://purl.obolibrary.org/obo/UBERON_0029538` +### regulation of chromatin binding `http://purl.obolibrary.org/obo/GO_0035561` +#### Removed +- [regulation of chromatin binding](http://purl.obolibrary.org/obo/GO_0035561) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [sacral spinal cord lateral horn](http://purl.obolibrary.org/obo/UBERON_0029538) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of chromatin binding](http://purl.obolibrary.org/obo/GO_0035561) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### regulation of collagen binding `http://purl.obolibrary.org/obo/GO_0033341` +#### Removed +- [regulation of collagen binding](http://purl.obolibrary.org/obo/GO_0033341) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [sacral spinal cord lateral horn](http://purl.obolibrary.org/obo/UBERON_0029538) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +#### Added +- [regulation of collagen binding](http://purl.obolibrary.org/obo/GO_0033341) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### sacral spinal cord ventral column `http://purl.obolibrary.org/obo/UBERON_0005853` +### regulation of deoxyribonuclease activity `http://purl.obolibrary.org/obo/GO_0032070` +#### Removed +- [regulation of deoxyribonuclease activity](http://purl.obolibrary.org/obo/GO_0032070) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [sacral spinal cord ventral column](http://purl.obolibrary.org/obo/UBERON_0005853) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of deoxyribonuclease activity](http://purl.obolibrary.org/obo/GO_0032070) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### regulation of euchromatin binding `http://purl.obolibrary.org/obo/GO_1904793` +#### Removed +- [regulation of euchromatin binding](http://purl.obolibrary.org/obo/GO_1904793) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [sacral spinal cord ventral column](http://purl.obolibrary.org/obo/UBERON_0005853) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [regulation of euchromatin binding](http://purl.obolibrary.org/obo/GO_1904793) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### sacral spinal cord ventral commissure `http://purl.obolibrary.org/obo/UBERON_0007835` +### regulation of hydrolase activity `http://purl.obolibrary.org/obo/GO_0051336` +#### Removed +- [regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051336) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [sacral spinal cord ventral commissure](http://purl.obolibrary.org/obo/UBERON_0007835) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051336) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### regulation of iron ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_1904254` +#### Removed +- [regulation of iron ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1904254) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [sacral spinal cord ventral commissure](http://purl.obolibrary.org/obo/UBERON_0007835) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +#### Added +- [regulation of iron ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_1904254) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### sacral spinal cord ventral horn `http://purl.obolibrary.org/obo/UBERON_0032748` +### regulation of kinase activity `http://purl.obolibrary.org/obo/GO_0043549` +#### Removed +- [regulation of kinase activity](http://purl.obolibrary.org/obo/GO_0043549) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [sacral spinal cord ventral horn](http://purl.obolibrary.org/obo/UBERON_0032748) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of kinase activity](http://purl.obolibrary.org/obo/GO_0043549) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### regulation of ligase activity `http://purl.obolibrary.org/obo/GO_0051340` +#### Removed +- [regulation of ligase activity](http://purl.obolibrary.org/obo/GO_0051340) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [sacral spinal cord ventral horn](http://purl.obolibrary.org/obo/UBERON_0032748) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +#### Added +- [regulation of ligase activity](http://purl.obolibrary.org/obo/GO_0051340) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### sacral spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0026246` +### regulation of lipid binding `http://purl.obolibrary.org/obo/GO_1900130` +#### Removed +- [regulation of lipid binding](http://purl.obolibrary.org/obo/GO_1900130) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [sacral spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0026246) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of lipid binding](http://purl.obolibrary.org/obo/GO_1900130) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + -- [sacral spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0026246) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### regulation of lipid transporter activity `http://purl.obolibrary.org/obo/GO_0110112` +#### Removed +- [regulation of lipid transporter activity](http://purl.obolibrary.org/obo/GO_0110112) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [regulation of lipid transporter activity](http://purl.obolibrary.org/obo/GO_0110112) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### sacral subsegment of spinal cord `http://purl.obolibrary.org/obo/UBERON_0007717` +### regulation of microtubule binding `http://purl.obolibrary.org/obo/GO_1904526` +#### Removed +- [regulation of microtubule binding](http://purl.obolibrary.org/obo/GO_1904526) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [sacral subsegment of spinal cord](http://purl.obolibrary.org/obo/UBERON_0007717) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of microtubule binding](http://purl.obolibrary.org/obo/GO_1904526) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [sacral subsegment of spinal cord](http://purl.obolibrary.org/obo/UBERON_0007717) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### regulation of molecular function `http://purl.obolibrary.org/obo/GO_0065009` +#### Removed +- [regulation of molecular function](http://purl.obolibrary.org/obo/GO_0065009) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -### sacral vertebra `http://purl.obolibrary.org/obo/UBERON_0001094` -#### Added -- [sacral vertebra](http://purl.obolibrary.org/obo/UBERON_0001094) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [sacral vertebra](http://purl.obolibrary.org/obo/UBERON_0001094) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### regulation of monoatomic ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0032412` +#### Removed +- [regulation of monoatomic ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0032412) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [regulation of monoatomic ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0032412) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### salpingopharyngeus muscle `http://purl.obolibrary.org/obo/UBERON_0010937` +### regulation of neurotransmitter levels `http://purl.obolibrary.org/obo/GO_0001505` #### Added -- [salpingopharyngeus muscle](http://purl.obolibrary.org/obo/UBERON_0010937) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of neurotransmitter levels](http://purl.obolibrary.org/obo/GO_0001505) SubClassOf [only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Eumetazoa](http://purl.obolibrary.org/obo/NCBITaxon_6072) -- [salpingopharyngeus muscle](http://purl.obolibrary.org/obo/UBERON_0010937) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of neurotransmitter levels](http://purl.obolibrary.org/obo/GO_0001505) SubClassOf [in taxon](http://purl.obolibrary.org/obo/RO_0002162) only [Eumetazoa](http://purl.obolibrary.org/obo/NCBITaxon_6072) -### sartorius muscle `http://purl.obolibrary.org/obo/UBERON_0001373` +### regulation of neurotransmitter receptor activity `http://purl.obolibrary.org/obo/GO_0099601` +#### Removed +- [regulation of neurotransmitter receptor activity](http://purl.obolibrary.org/obo/GO_0099601) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [sartorius muscle](http://purl.obolibrary.org/obo/UBERON_0001373) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of neurotransmitter receptor activity](http://purl.obolibrary.org/obo/GO_0099601) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + + +### regulation of nuclease activity `http://purl.obolibrary.org/obo/GO_0032069` +#### Removed +- [regulation of nuclease activity](http://purl.obolibrary.org/obo/GO_0032069) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -- [sartorius muscle](http://purl.obolibrary.org/obo/UBERON_0001373) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +#### Added +- [regulation of nuclease activity](http://purl.obolibrary.org/obo/GO_0032069) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### scalenus medius `http://purl.obolibrary.org/obo/UBERON_0001122` +### regulation of nucleoside metabolic process `http://purl.obolibrary.org/obo/GO_0009118` #### Added -- [scalenus medius](http://purl.obolibrary.org/obo/UBERON_0001122) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of nucleoside metabolism" + +- [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of nucleoside metabolic process" + +- [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleosides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009118" + +- Class: [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) -- [scalenus medius](http://purl.obolibrary.org/obo/UBERON_0001122) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116)) +- [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) SubClassOf [regulation of small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0062012) -### scapula `http://purl.obolibrary.org/obo/UBERON_0006849` +- [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) + +- [regulation of nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009118) SubClassOf [regulation of nucleobase-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0019219) + + +### regulation of nucleoside transport `http://purl.obolibrary.org/obo/GO_0032242` #### Added -- [scapula](http://purl.obolibrary.org/obo/UBERON_0006849) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of nucleoside transport" + +- [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032242" + +- [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- Class: [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) -- [scapula](http://purl.obolibrary.org/obo/UBERON_0006849) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858)) +- [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) SubClassOf [regulation of nucleobase-containing compound transport](http://purl.obolibrary.org/obo/GO_0032239) -### sclera `http://purl.obolibrary.org/obo/UBERON_0001773` +- [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [nucleoside transport](http://purl.obolibrary.org/obo/GO_0015858) + + +### regulation of nucleotide biosynthetic process `http://purl.obolibrary.org/obo/GO_0030808` #### Added -- [sclera](http://purl.obolibrary.org/obo/UBERON_0001773) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of nucleotide formation" + +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of nucleotide biosynthetic process" + +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of nucleotide biosynthesis" + +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of nucleotide anabolism" + +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [sclera](http://purl.obolibrary.org/obo/UBERON_0001773) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of nucleotide synthesis" +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0030808" -### scleral cell `http://purl.obolibrary.org/obo/CL_0000347` +- Class: [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) + +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165)) + +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) + +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) SubClassOf [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) + +- [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) SubClassOf [regulation of cellular biosynthetic process](http://purl.obolibrary.org/obo/GO_0031326) + + +### regulation of nucleotide catabolic process `http://purl.obolibrary.org/obo/GO_0030811` #### Added -- [scleral cell](http://purl.obolibrary.org/obo/CL_0000347) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of nucleotide degradation" + +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of nucleotide catabolism" + +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of nucleotide catabolic process" + +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" + +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0030811" + +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of nucleotide breakdown" + +- Class: [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) + +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166)) + +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) -- [scleral cell](http://purl.obolibrary.org/obo/CL_0000347) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) SubClassOf [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) +- [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) SubClassOf [regulation of cellular catabolic process](http://purl.obolibrary.org/obo/GO_0031329) -### scleral lamina cribrosa `http://purl.obolibrary.org/obo/UBERON_0035966` + +### regulation of nucleotide metabolic process `http://purl.obolibrary.org/obo/GO_0006140` #### Added -- [scleral lamina cribrosa](http://purl.obolibrary.org/obo/UBERON_0035966) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006140" + +- [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + +- [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of nucleotide metabolic process" + +- [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of nucleotide metabolism" + +- Class: [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) + +- [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117)) -- [scleral lamina cribrosa](http://purl.obolibrary.org/obo/UBERON_0035966) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) +- [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) SubClassOf [regulation of nucleobase-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0019219) -### sebaceous gland cell `http://purl.obolibrary.org/obo/CL_2000021` +- [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) SubClassOf [regulation of small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0062012) + +- [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) SubClassOf [regulation of phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019220) + + +### regulation of peptidase activity `http://purl.obolibrary.org/obo/GO_0052547` #### Removed -- [sebaceous gland cell](http://purl.obolibrary.org/obo/CL_2000021) SubClassOf [native cell](http://purl.obolibrary.org/obo/CL_0000003) +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -#### Added -- [sebaceous gland cell](http://purl.obolibrary.org/obo/CL_2000021) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0052547" -### second lumbar spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006450` +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" -#### Added -- [second lumbar spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006450) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "peptidase regulator activity" -- [second lumbar spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006450) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of peptidase activity" +- Class: [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) -### second sacral spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006461` +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233)) -#### Added -- [second sacral spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006461) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) -- [second sacral spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006461) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) SubClassOf [regulation of proteolysis](http://purl.obolibrary.org/obo/GO_0030162) +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) SubClassOf [regulation of hydrolase activity](http://purl.obolibrary.org/obo/GO_0051336) -### second thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006458` +- [regulation of peptidase activity](http://purl.obolibrary.org/obo/GO_0052547) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [proteolysis](http://purl.obolibrary.org/obo/GO_0006508) + - [IAO_0000233](http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/13926" -#### Added -- [second thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006458) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [second thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006458) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +### regulation of postsynaptic neurotransmitter receptor activity `http://purl.obolibrary.org/obo/GO_0098962` +#### Removed +- [regulation of postsynaptic neurotransmitter receptor activity](http://purl.obolibrary.org/obo/GO_0098962) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [regulation of postsynaptic neurotransmitter receptor activity](http://purl.obolibrary.org/obo/GO_0098962) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### segmental pulmonary artery `http://purl.obolibrary.org/obo/UBERON_0039262` +### regulation of protein binding `http://purl.obolibrary.org/obo/GO_0043393` #### Removed -- [segmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0039262) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of protein binding](http://purl.obolibrary.org/obo/GO_0043393) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) + +#### Added +- [regulation of protein binding](http://purl.obolibrary.org/obo/GO_0043393) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) + -- [segmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0039262) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### regulation of protein kinase activity `http://purl.obolibrary.org/obo/GO_0045859` +#### Removed +- [regulation of protein kinase activity](http://purl.obolibrary.org/obo/GO_0045859) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +#### Added +- [regulation of protein kinase activity](http://purl.obolibrary.org/obo/GO_0045859) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### semimembranosus muscle `http://purl.obolibrary.org/obo/UBERON_0001381` +### regulation of protein serine/threonine kinase activity `http://purl.obolibrary.org/obo/GO_0071900` +#### Removed +- [regulation of protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0071900) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [semimembranosus muscle](http://purl.obolibrary.org/obo/UBERON_0001381) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [semimembranosus muscle](http://purl.obolibrary.org/obo/UBERON_0001381) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of protein serine/threonine kinase activity](http://purl.obolibrary.org/obo/GO_0071900) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### semitendinosus `http://purl.obolibrary.org/obo/UBERON_0001375` +### regulation of protein tyrosine kinase activity `http://purl.obolibrary.org/obo/GO_0061097` +#### Removed +- [regulation of protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0061097) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [semitendinosus](http://purl.obolibrary.org/obo/UBERON_0001375) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [semitendinosus](http://purl.obolibrary.org/obo/UBERON_0001375) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of protein tyrosine kinase activity](http://purl.obolibrary.org/obo/GO_0061097) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### serous cell of epithelium of bronchus `http://purl.obolibrary.org/obo/CL_1000331` +### regulation of purine nucleobase metabolic process `http://purl.obolibrary.org/obo/GO_0006141` #### Added -- [serous cell of epithelium of bronchus](http://purl.obolibrary.org/obo/CL_1000331) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of purine nucleobase metabolic process" -- [serous cell of epithelium of bronchus](http://purl.obolibrary.org/obo/CL_1000331) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving purines." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" +- [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of purine base metabolism" -### serous cell of epithelium of trachea `http://purl.obolibrary.org/obo/CL_1000330` +- [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [serous cell of epithelium of trachea](http://purl.obolibrary.org/obo/CL_1000330) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of purine base metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [serous cell of epithelium of trachea](http://purl.obolibrary.org/obo/CL_1000330) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0006141" +- Class: [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) -### serous secreting cell `http://purl.obolibrary.org/obo/CL_0000313` -#### Removed -- [serous secreting cell](http://purl.obolibrary.org/obo/CL_0000313) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144)) -- [serous secreting cell](http://purl.obolibrary.org/obo/CL_0000313) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) SubClassOf [regulation of nucleobase-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0019219) +- [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006144) +- [regulation of purine nucleobase metabolic process](http://purl.obolibrary.org/obo/GO_0006141) SubClassOf [regulation of small molecule metabolic process](http://purl.obolibrary.org/obo/GO_0062012) -### serratus ventralis `http://purl.obolibrary.org/obo/UBERON_0001125` + +### regulation of purine nucleoside transport `http://purl.obolibrary.org/obo/GO_0032245` #### Added -- [serratus ventralis](http://purl.obolibrary.org/obo/UBERON_0001125) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032245) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of purine nucleoside transport" -- [serratus ventralis](http://purl.obolibrary.org/obo/UBERON_0001125) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032245) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032245) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -### seventh thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006455` +- [regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032245) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032245" -#### Added -- [seventh thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006455) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032245) -- [seventh thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006455) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of purine nucleoside transport](http://purl.obolibrary.org/obo/GO_0032245) SubClassOf [regulation of nucleoside transport](http://purl.obolibrary.org/obo/GO_0032242) -### sixth thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006454` +### regulation of purine nucleotide biosynthetic process `http://purl.obolibrary.org/obo/GO_1900371` #### Added -- [sixth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006454) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [sixth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006454) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of purine nucleotide formation" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of purine nucleotide biosynthetic process" -### skeleton `http://purl.obolibrary.org/obo/UBERON_0004288` +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "krc" -#### Added -- [skeleton](http://purl.obolibrary.org/obo/UBERON_0004288) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of purine nucleotide synthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [skeleton](http://purl.obolibrary.org/obo/UBERON_0004288) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of purine nucleotide anabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of purine nucleotide biosynthesis" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### skin of thoracolumbar junction `http://purl.obolibrary.org/obo/UBERON_8480052` +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-04-17T12:32:07Z" -#### Added -- [skin of thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480052) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A zone of skin that is part of the thoracolumbar junction." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-0819-0473" +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of purine nucleotide biosynthetic processes." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [skin of thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480052) [date](http://purl.org/dc/terms/date) "2023-04-26T07:45:34Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -- [skin of thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480052) [label](http://www.w3.org/2000/01/rdf-schema#label) "skin of thoracolumbar junction" +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1900371" -- [skin of thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480052) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480052" +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [skin of thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480052) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- Class: [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) -- [skin of thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480052) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164)) -- Class: [skin of thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480052) +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) SubClassOf [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) -- [skin of thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480052) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0006164) -- [skin of thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480052) SubClassOf [skin of back](http://purl.obolibrary.org/obo/UBERON_0001068) +- [regulation of purine nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_1900371) SubClassOf [regulation of nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0030808) -### skin of umbilical area `http://purl.obolibrary.org/obo/UBERON_8480053` +### regulation of purine nucleotide catabolic process `http://purl.obolibrary.org/obo/GO_0033121` #### Added -- [skin of umbilical area](http://purl.obolibrary.org/obo/UBERON_8480053) [label](http://www.w3.org/2000/01/rdf-schema#label) "skin of umbilical area" - -- [skin of umbilical area](http://purl.obolibrary.org/obo/UBERON_8480053) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [skin of umbilical area](http://purl.obolibrary.org/obo/UBERON_8480053) [date](http://purl.org/dc/terms/date) "2023-04-26T07:54:47Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of purine nucleotide catabolic process" -- [skin of umbilical area](http://purl.obolibrary.org/obo/UBERON_8480053) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480053" +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of purine nucleotide breakdown" -- [skin of umbilical area](http://purl.obolibrary.org/obo/UBERON_8480053) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of purine nucleotide catabolism" -- [skin of umbilical area](http://purl.obolibrary.org/obo/UBERON_8480053) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A zone of skin that is part of the umbilicus and the periumbilical region." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://orcid.org/0000-0002-0819-0473" +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- Class: [skin of umbilical area](http://purl.obolibrary.org/obo/UBERON_8480053) +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0033121" -- [skin of umbilical area](http://purl.obolibrary.org/obo/UBERON_8480053) SubClassOf [skin of abdomen](http://purl.obolibrary.org/obo/UBERON_0001416) +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of purine nucleotide degradation" -- [skin of umbilical area](http://purl.obolibrary.org/obo/UBERON_8480053) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [abdomen](http://purl.obolibrary.org/obo/UBERON_0000916) +- Class: [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195)) -### smooth muscle cell of the pulmonary artery `http://purl.obolibrary.org/obo/CL_0002591` -#### Removed -- [smooth muscle cell of the pulmonary artery](http://purl.obolibrary.org/obo/CL_0002591) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) SubClassOf [regulation of nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0030811) -- [smooth muscle cell of the pulmonary artery](http://purl.obolibrary.org/obo/CL_0002591) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0006195) +- [regulation of purine nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0033121) SubClassOf [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) -### soleus muscle `http://purl.obolibrary.org/obo/UBERON_0001389` +### regulation of purine nucleotide metabolic process `http://purl.obolibrary.org/obo/GO_1900542` #### Added -- [soleus muscle](http://purl.obolibrary.org/obo/UBERON_0001389) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [soleus muscle](http://purl.obolibrary.org/obo/UBERON_0001389) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "regulation of purine metabolic process" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that modulates the frequency, rate or extent of purine nucleotide metabolic process." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### somatic cell `http://purl.obolibrary.org/obo/CL_0002371` -#### Removed -- [somatic cell](http://purl.obolibrary.org/obo/CL_0002371) SubClassOf [native cell](http://purl.obolibrary.org/obo/CL_0000003) +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [somatic cell](http://purl.obolibrary.org/obo/CL_0002371) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2012-05-11T05:43:15Z" +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "regulation of purine metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" -### specifically dependent continuant `http://purl.obolibrary.org/obo/BFO_0000020` +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:1900542" -#### Added -- [specifically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000020) DisjointWith [generically dependent continuant](http://purl.obolibrary.org/obo/BFO_0000031) +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "regulation of purine nucleotide metabolism" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:TermGenie" +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "krc" -### spermatid `http://purl.obolibrary.org/obo/CL_0000018` +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) [label](http://www.w3.org/2000/01/rdf-schema#label) "regulation of purine nucleotide metabolic process" -#### Added -- [spermatid](http://purl.obolibrary.org/obo/CL_0000018) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- Class: [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) EquivalentTo [biological regulation](http://purl.obolibrary.org/obo/GO_0065007) and ([regulates](http://purl.obolibrary.org/obo/RO_0002211) some [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163)) -### spermatocyte `http://purl.obolibrary.org/obo/CL_0000017` +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) SubClassOf [regulation of nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006140) -#### Added -- [spermatocyte](http://purl.obolibrary.org/obo/CL_0000017) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [regulation of purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_1900542) SubClassOf [regulates](http://purl.obolibrary.org/obo/RO_0002211) some [purine nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0006163) -### spermatogonium `http://purl.obolibrary.org/obo/CL_0000020` +### regulation of receptor binding `http://purl.obolibrary.org/obo/GO_1900120` +#### Removed +- [regulation of receptor binding](http://purl.obolibrary.org/obo/GO_1900120) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [spermatogonium](http://purl.obolibrary.org/obo/CL_0000020) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [regulation of receptor binding](http://purl.obolibrary.org/obo/GO_1900120) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### sphenoid bone `http://purl.obolibrary.org/obo/UBERON_0001677` +### regulation of signaling receptor activity `http://purl.obolibrary.org/obo/GO_0010469` +#### Removed +- [regulation of signaling receptor activity](http://purl.obolibrary.org/obo/GO_0010469) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [sphenoid bone](http://purl.obolibrary.org/obo/UBERON_0001677) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [sphenoid bone](http://purl.obolibrary.org/obo/UBERON_0001677) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of signaling receptor activity](http://purl.obolibrary.org/obo/GO_0010469) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### spinal cord `http://purl.obolibrary.org/obo/UBERON_0002240` +### regulation of sodium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_2000649` +#### Removed +- [regulation of sodium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_2000649) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [spinal cord](http://purl.obolibrary.org/obo/UBERON_0002240) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [spinal cord](http://purl.obolibrary.org/obo/UBERON_0002240) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of sodium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_2000649) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### spinal cord interneuron `http://purl.obolibrary.org/obo/CL_0005000` +### regulation of transferase activity `http://purl.obolibrary.org/obo/GO_0051338` +#### Removed +- [regulation of transferase activity](http://purl.obolibrary.org/obo/GO_0051338) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [spinal cord interneuron](http://purl.obolibrary.org/obo/CL_0005000) SubClassOf [develops from](http://purl.obolibrary.org/obo/RO_0002202) some [neuroblast (sensu Vertebrata)](http://purl.obolibrary.org/obo/CL_0000031) +- [regulation of transferase activity](http://purl.obolibrary.org/obo/GO_0051338) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -### spinalis capitis muscle `http://purl.obolibrary.org/obo/UBERON_0011014` +### regulation of transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0022898` +#### Removed +- [regulation of transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022898) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [spinalis capitis muscle](http://purl.obolibrary.org/obo/UBERON_0011014) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0022898) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [spinalis capitis muscle](http://purl.obolibrary.org/obo/UBERON_0011014) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### spinalis cervicis muscle `http://purl.obolibrary.org/obo/UBERON_0011218` +### regulation of transporter activity `http://purl.obolibrary.org/obo/GO_0032409` +#### Removed +- [regulation of transporter activity](http://purl.obolibrary.org/obo/GO_0032409) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) #### Added -- [spinalis cervicis muscle](http://purl.obolibrary.org/obo/UBERON_0011218) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [regulation of transporter activity](http://purl.obolibrary.org/obo/GO_0032409) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [gocheck_do_not_annotate](http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate) -- [spinalis cervicis muscle](http://purl.obolibrary.org/obo/UBERON_0011218) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### spinalis thoracis muscle `http://purl.obolibrary.org/obo/UBERON_0001405` +### response to ATP `http://purl.obolibrary.org/obo/GO_0033198` #### Added -- [spinalis thoracis muscle](http://purl.obolibrary.org/obo/UBERON_0001405) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) [label](http://www.w3.org/2000/01/rdf-schema#label) "response to ATP" -- [spinalis thoracis muscle](http://purl.obolibrary.org/obo/UBERON_0001405) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "response to adenosine triphosphate" +- [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:sl" -### splanchnocranium `http://purl.obolibrary.org/obo/UBERON_0008895` +- [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "response to adenosine 5'-triphosphate" -#### Added -- [splanchnocranium](http://purl.obolibrary.org/obo/UBERON_0008895) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [splanchnocranium](http://purl.obolibrary.org/obo/UBERON_0008895) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0033198" +- Class: [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) -### stapedius muscle `http://purl.obolibrary.org/obo/UBERON_0001599` +- [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) EquivalentTo [response to stimulus](http://purl.obolibrary.org/obo/GO_0050896) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616)) -#### Added -- [stapedius muscle](http://purl.obolibrary.org/obo/UBERON_0001599) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [ATP(4-)](http://purl.obolibrary.org/obo/CHEBI_30616) -- [stapedius muscle](http://purl.obolibrary.org/obo/UBERON_0001599) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [response to ATP](http://purl.obolibrary.org/obo/GO_0033198) SubClassOf [response to organic substance](http://purl.obolibrary.org/obo/GO_0010033) -### stapes bone `http://purl.obolibrary.org/obo/UBERON_0001687` +### response to purine-containing compound `http://purl.obolibrary.org/obo/GO_0014074` #### Added -- [stapes bone](http://purl.obolibrary.org/obo/UBERON_0001687) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [response to purine-containing compound](http://purl.obolibrary.org/obo/GO_0014074) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine-containing compound stimulus." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ef" -- [stapes bone](http://purl.obolibrary.org/obo/UBERON_0001687) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [response to purine-containing compound](http://purl.obolibrary.org/obo/GO_0014074) [label](http://www.w3.org/2000/01/rdf-schema#label) "response to purine-containing compound" +- [response to purine-containing compound](http://purl.obolibrary.org/obo/GO_0014074) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -### sternal end of clavicle `http://purl.obolibrary.org/obo/UBERON_0006805` +- [response to purine-containing compound](http://purl.obolibrary.org/obo/GO_0014074) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "response to purine" -#### Added -- [sternal end of clavicle](http://purl.obolibrary.org/obo/UBERON_0006805) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [response to purine-containing compound](http://purl.obolibrary.org/obo/GO_0014074) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0014074" -- [sternal end of clavicle](http://purl.obolibrary.org/obo/UBERON_0006805) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [response to purine-containing compound](http://purl.obolibrary.org/obo/GO_0014074) +- [response to purine-containing compound](http://purl.obolibrary.org/obo/GO_0014074) EquivalentTo [response to stimulus](http://purl.obolibrary.org/obo/GO_0050896) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [purines](http://purl.obolibrary.org/obo/CHEBI_26401)) -### sternocleidomastoid `http://purl.obolibrary.org/obo/UBERON_0001128` +- [response to purine-containing compound](http://purl.obolibrary.org/obo/GO_0014074) SubClassOf [response to organonitrogen compound](http://purl.obolibrary.org/obo/GO_0010243) -#### Added -- [sternocleidomastoid](http://purl.obolibrary.org/obo/UBERON_0001128) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [response to purine-containing compound](http://purl.obolibrary.org/obo/GO_0014074) SubClassOf [response to organic cyclic compound](http://purl.obolibrary.org/obo/GO_0014070) -- [sternocleidomastoid](http://purl.obolibrary.org/obo/UBERON_0001128) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [response to purine-containing compound](http://purl.obolibrary.org/obo/GO_0014074) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [purines](http://purl.obolibrary.org/obo/CHEBI_26401) -### sternohyoid muscle `http://purl.obolibrary.org/obo/UBERON_0001107` +### retinal cell `http://purl.obolibrary.org/obo/CL_0009004` #### Added -- [sternohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001107) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [retinal cell](http://purl.obolibrary.org/obo/CL_0009004) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [sternohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001107) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### sternothyroid muscle `http://purl.obolibrary.org/obo/UBERON_0001109` +### ribofuranose `http://purl.obolibrary.org/obo/CHEBI_46998` #### Added -- [sternothyroid muscle](http://purl.obolibrary.org/obo/UBERON_0001109) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribofuranose" + +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribofuranose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [sternothyroid muscle](http://purl.obolibrary.org/obo/UBERON_0001109) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "150.05282" -### sternum `http://purl.obolibrary.org/obo/UBERON_0000975` +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H10O5" -#### Added -- [sternum](http://purl.obolibrary.org/obo/UBERON_0000975) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [sternum](http://purl.obolibrary.org/obo/UBERON_0000975) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:46998" +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [mass](http://purl.obolibrary.org/obo/chebi/mass) "150.12990" -### stroma of bone marrow `http://purl.obolibrary.org/obo/UBERON_0007195` -#### Removed -- [stroma of bone marrow](http://purl.obolibrary.org/obo/UBERON_0007195) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "rel-(3R,4S,5R)-5-(hydroxymethyl)tetrahydrofuran-2,3,4-triol" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [stroma of bone marrow](http://purl.obolibrary.org/obo/UBERON_0007195) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cyclic ribose having a 5-membered tetrahydrofuran ring; the predominant (C3'-endo) form of the two cyclic structures (the other is the "C2'-endo" form, having a 6-membered ring) adopted by ribose in aqueous solution." +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -### stylohyoid muscle `http://purl.obolibrary.org/obo/UBERON_0008712` +- Class: [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) -#### Added -- [stylohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0008712) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) SubClassOf [has role](http://purl.obolibrary.org/obo/RO_0000087) some [algal metabolite](http://purl.obolibrary.org/obo/CHEBI_84735) -- [stylohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0008712) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribofuranose](http://purl.obolibrary.org/obo/CHEBI_46998) SubClassOf [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) -### styloid process of ulna `http://purl.obolibrary.org/obo/UBERON_0011575` +### ribonucleoside `http://purl.obolibrary.org/obo/CHEBI_18254` #### Added -- [styloid process of ulna](http://purl.obolibrary.org/obo/UBERON_0011575) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13014" -- [styloid process of ulna](http://purl.obolibrary.org/obo/UBERON_0011575) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13015" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [smiles](http://purl.obolibrary.org/obo/chebi/smiles) "OC[C@H]1O[C@@H]([*])[C@H](O)[C@@H]1O" -### stylopharyngeus muscle `http://purl.obolibrary.org/obo/UBERON_0008804` +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:26560" -#### Added -- [stylopharyngeus muscle](http://purl.obolibrary.org/obo/UBERON_0008804) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Ribonucleoside" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [stylopharyngeus muscle](http://purl.obolibrary.org/obo/UBERON_0008804) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleosides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H9O4R" -### subcarinal lymph node `http://purl.obolibrary.org/obo/UBERON_8480055` +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [mass](http://purl.obolibrary.org/obo/chebi/mass) "133.123" -#### Added -- [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) [label](http://www.w3.org/2000/01/rdf-schema#label) "subcarinal lymph node" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:4240" -- [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside" -- [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) [date](http://purl.org/dc/terms/date) "2023-05-11T12:12:47Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "a ribonucleoside" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UniProt" -- [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480055" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any nucleoside where the sugar component is D-ribose." -- [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Superior mediastinal lymph node located in the thoracic cavity between the lungs. It is bordered by the carina of the trachea, the lower lobe bronchus on the left and the intermediate bronchus on the right." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C117873" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422458" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "133.05008" -- [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "subcarinal node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30422458" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:8844" -- [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) [curator notes](http://purl.obolibrary.org/obo/IAO_0000232) "Subcarinal lymph nodes (station 7) in International Association for the Study of Lung Cancer (IASLC) map coincide with station 2, 8, and 10 lymph nodes in Wang’s map. PMID:26807271" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:21085" -- [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "left subcarinal lymph node" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36899970" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C00911" -- Class: [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:18254" -- [subcarinal lymph node](http://purl.obolibrary.org/obo/UBERON_8480055) SubClassOf [superior mediastinal lymph node](http://purl.obolibrary.org/obo/UBERON_0038651) +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:13685" +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -### subcostal muscle `http://purl.obolibrary.org/obo/UBERON_0008618` +- Class: [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) -#### Added -- [subcostal muscle](http://purl.obolibrary.org/obo/UBERON_0008618) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) SubClassOf [dihydroxytetrahydrofuran](http://purl.obolibrary.org/obo/CHEBI_47019) -- [subcostal muscle](http://purl.obolibrary.org/obo/UBERON_0008618) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) SubClassOf [nucleoside](http://purl.obolibrary.org/obo/CHEBI_33838) -### subiliac lymph node `http://purl.obolibrary.org/obo/UBERON_8480045` +### ribonucleoside 5'-diphosphate `http://purl.obolibrary.org/obo/CHEBI_37075` #### Added -- [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) [label](http://www.w3.org/2000/01/rdf-schema#label) "subiliac lymph node" +- [ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37075) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:37075" -- [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480045" +- [ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37075) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside 5'-diphosphate" -- [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "subiliac lymphocenter" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://dr.lib.iastate.edu/handle/20.500.12876/46336" +- [ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37075) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside 5'-diphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A lymph node located inferior to the ilium." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C92594" +- [ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37075) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37075) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) [curator notes](http://purl.obolibrary.org/obo/IAO_0000232) "This term is frequently used in swine (PMID:35566137, PMID:27866702) and mice (PMID:16624319, PMID:23328410). According to PMID:32882076 ‘inguinal lymph node’ (PMID:25919005, PMID:17804011) and ‘superficial inguinal lymph node’ (PMID:11581317) have been used incorrectly as synonyms of ‘subiliac lymph node’. In addition, ‘prefemoral lymph node’ and ‘subiliac lymph node’ have been used as synonyms (PMID:22561151, PMID:23228067, PMID:24752354, PMID:8727908). However, in the last version of the 'Systematized Nomenclature of Medicine, International Version' ontology, both terms are linked to different classes, ‘subiliac lymph node’ to ‘lymp node of pelvis, NOS’ and ‘prefemoral lymph node’ to ‘lymph node of lower extremity, NOS’." +- Class: [ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37075) -- [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:323407" +- [ribonucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_37075) SubClassOf [ribonucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37015) -- [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) [date](http://purl.org/dc/terms/date) "2023-02-03T06:41:18Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) -- [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +### ribonucleoside 5'-phosphate `http://purl.obolibrary.org/obo/CHEBI_37015` -- Class: [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) +#### Added +- [ribonucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37015) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside 5'-phosphate" -- [subiliac lymph node](http://purl.obolibrary.org/obo/UBERON_8480045) SubClassOf [parietal pelvic lymph node](http://purl.obolibrary.org/obo/UBERON_0015877) +- [ribonucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37015) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside 5'-phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [ribonucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37015) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:37015" -### submucosal gland acinus `http://purl.obolibrary.org/obo/UBERON_8600012` +- [ribonucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37015) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [submucosal gland acinus](http://purl.obolibrary.org/obo/UBERON_8600012) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A spherical or tubular structure in a submucosal gland that produces and secretes mucus and other substances into the ducts leading to the surface epithelium." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:17394068" +- [ribonucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37015) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30864819" +- Class: [ribonucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37015) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:17707699" +- [ribonucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37015) SubClassOf [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25648514" +- [ribonucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37015) SubClassOf [nucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_16701) -- [submucosal gland acinus](http://purl.obolibrary.org/obo/UBERON_8600012) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600012" -- [submucosal gland acinus](http://purl.obolibrary.org/obo/UBERON_8600012) [date](http://purl.org/dc/terms/date) "2023-05-02T08:57:27Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +### ribonucleoside 5'-triphosphate `http://purl.obolibrary.org/obo/CHEBI_37076` -- [submucosal gland acinus](http://purl.obolibrary.org/obo/UBERON_8600012) [label](http://www.w3.org/2000/01/rdf-schema#label) "submucosal gland acinus" +#### Added +- [ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37076) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside 5'-triphosphate" -- [submucosal gland acinus](http://purl.obolibrary.org/obo/UBERON_8600012) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37076) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [submucosal gland acinus](http://purl.obolibrary.org/obo/UBERON_8600012) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37076) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:37076" -- Class: [submucosal gland acinus](http://purl.obolibrary.org/obo/UBERON_8600012) +- [ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37076) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -- [submucosal gland acinus](http://purl.obolibrary.org/obo/UBERON_8600012) EquivalentTo [glandular acinus](http://purl.obolibrary.org/obo/UBERON_0009842) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [submucosal gland](http://purl.obolibrary.org/obo/UBERON_0011148)) +- [ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37076) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside 5'-triphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [submucosal gland acinus](http://purl.obolibrary.org/obo/UBERON_8600012) SubClassOf [mucous acinus](http://purl.obolibrary.org/obo/UBERON_0014717) +- Class: [ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37076) -- [submucosal gland acinus](http://purl.obolibrary.org/obo/UBERON_8600012) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [submucosal gland](http://purl.obolibrary.org/obo/UBERON_0011148) +- [ribonucleoside 5'-triphosphate](http://purl.obolibrary.org/obo/CHEBI_37076) SubClassOf [ribonucleoside 5'-phosphate](http://purl.obolibrary.org/obo/CHEBI_37015) -### submucosal gland ciliated duct `http://purl.obolibrary.org/obo/UBERON_8600014` +### ribonucleoside binding `http://purl.obolibrary.org/obo/GO_0032549` #### Added -- [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) - -- [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) [date](http://purl.org/dc/terms/date) "2023-05-02T08:09:14Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032549) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032549" -- [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) [label](http://www.w3.org/2000/01/rdf-schema#label) "submucosal gland ciliated duct" - -- [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ciliated tubular structure in a submucosal gland connecting the submucosal gland collecting duct with the surface epithelium." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30864819" +- [ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032549) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:17707699" +- [ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032549) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -- [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600014" +- [ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032549) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside binding" -- Class: [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) +- Class: [ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032549) -- [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) SubClassOf [duct](http://purl.obolibrary.org/obo/UBERON_0000058) +- [ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032549) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254)) -- [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [submucosal gland](http://purl.obolibrary.org/obo/UBERON_0011148) +- [ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032549) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) -- [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [ciliated epithelial cell](http://purl.obolibrary.org/obo/CL_0000067) +- [ribonucleoside binding](http://purl.obolibrary.org/obo/GO_0032549) SubClassOf [nucleoside binding](http://purl.obolibrary.org/obo/GO_0001882) -### submucosal gland collecting duct `http://purl.obolibrary.org/obo/UBERON_8600013` +### ribonucleoside biosynthetic process `http://purl.obolibrary.org/obo/GO_0042455` #### Added -- [submucosal gland collecting duct](http://purl.obolibrary.org/obo/UBERON_8600013) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [submucosal gland collecting duct](http://purl.obolibrary.org/obo/UBERON_8600013) [label](http://www.w3.org/2000/01/rdf-schema#label) "submucosal gland collecting duct" - -- [submucosal gland collecting duct](http://purl.obolibrary.org/obo/UBERON_8600013) [date](http://purl.org/dc/terms/date) "2023-05-02T08:08:59Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside anabolism" -- [submucosal gland collecting duct](http://purl.obolibrary.org/obo/UBERON_8600013) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [submucosal gland collecting duct](http://purl.obolibrary.org/obo/UBERON_8600013) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600013" +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside formation" -- [submucosal gland collecting duct](http://purl.obolibrary.org/obo/UBERON_8600013) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A non-secretory tubular structure in the submucosal gland where secretions are collected before flowing towards the surface epithelium." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:10520827" +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:jl" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30864819" +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside biosynthetic process" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:17707699" +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside synthesis" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25648514" +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0042455" -- Class: [submucosal gland collecting duct](http://purl.obolibrary.org/obo/UBERON_8600013) +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside biosynthesis" -- [submucosal gland collecting duct](http://purl.obolibrary.org/obo/UBERON_8600013) SubClassOf [duct](http://purl.obolibrary.org/obo/UBERON_0000058) +- Class: [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) -- [submucosal gland collecting duct](http://purl.obolibrary.org/obo/UBERON_8600013) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [submucosal gland](http://purl.obolibrary.org/obo/UBERON_0011148) +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254)) +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) SubClassOf [nucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0009163) -### subscapularis muscle `http://purl.obolibrary.org/obo/UBERON_0001129` +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) SubClassOf [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) -#### Added -- [subscapularis muscle](http://purl.obolibrary.org/obo/UBERON_0001129) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [subscapularis muscle](http://purl.obolibrary.org/obo/UBERON_0001129) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside biosynthetic process](http://purl.obolibrary.org/obo/GO_0042455) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) -### subsegmental bronchus `http://purl.obolibrary.org/obo/UBERON_8600009` +### ribonucleoside catabolic process `http://purl.obolibrary.org/obo/GO_0042454` #### Added -- [subsegmental bronchus](http://purl.obolibrary.org/obo/UBERON_8600009) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:jl" -- [subsegmental bronchus](http://purl.obolibrary.org/obo/UBERON_8600009) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0042454" -### substantia gelatinosa of cervical spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0014623` +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside catabolic process" -#### Added -- [substantia gelatinosa of cervical spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014623) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside breakdown" -- [substantia gelatinosa of cervical spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014623) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside catabolism" +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside degradation" -### substantia gelatinosa of lumbar spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0014633` +- Class: [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) -#### Added -- [substantia gelatinosa of lumbar spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014633) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254)) -- [substantia gelatinosa of lumbar spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014633) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) SubClassOf [nucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0009164) +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) SubClassOf [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) -### substantia gelatinosa of thoracic spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0014612` +- [ribonucleoside catabolic process](http://purl.obolibrary.org/obo/GO_0042454) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) -#### Added -- [substantia gelatinosa of thoracic spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014612) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [substantia gelatinosa of thoracic spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014612) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### ribonucleoside diphosphate `http://purl.obolibrary.org/obo/CHEBI_17668` +#### Added +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside diphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### superficial part of masseter muscle `http://purl.obolibrary.org/obo/UBERON_0011140` +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C03723" -#### Added -- [superficial part of masseter muscle](http://purl.obolibrary.org/obo/UBERON_0011140) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:15046" -- [superficial part of masseter muscle](http://purl.obolibrary.org/obo/UBERON_0011140) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H11O10P2R" +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Ribonucleoside diphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -### superior angle of scapula `http://purl.obolibrary.org/obo/UBERON_0007176` +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:8845" -#### Added -- [superior angle of scapula](http://purl.obolibrary.org/obo/UBERON_0007176) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [mass](http://purl.obolibrary.org/obo/chebi/mass) "293.083" -- [superior angle of scapula](http://purl.obolibrary.org/obo/UBERON_0007176) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:17668" +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside diphosphate" -### superior gemellus muscle `http://purl.obolibrary.org/obo/UBERON_0019203` +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:26557" -#### Added -- [superior gemellus muscle](http://purl.obolibrary.org/obo/UBERON_0019203) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [superior gemellus muscle](http://purl.obolibrary.org/obo/UBERON_0019203) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "292.98274" +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### superior oblique extraocular muscle `http://purl.obolibrary.org/obo/UBERON_0006321` +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -#### Added -- [superior oblique extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006321) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) -- [superior oblique extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006321) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) SubClassOf [nucleoside 5'-diphosphate](http://purl.obolibrary.org/obo/CHEBI_16862) -### superior rectus extraocular muscle `http://purl.obolibrary.org/obo/UBERON_0006323` +### ribonucleoside diphosphate biosynthetic process `http://purl.obolibrary.org/obo/GO_0009188` #### Added -- [superior rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006323) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [superior rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006323) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside diphosphate biosynthetic process" +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside diphosphate synthesis" -### superior tarsal muscle `http://purl.obolibrary.org/obo/UBERON_0010379` +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside diphosphate anabolism" -#### Added -- [superior tarsal muscle](http://purl.obolibrary.org/obo/UBERON_0010379) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009188" -- [superior tarsal muscle](http://purl.obolibrary.org/obo/UBERON_0010379) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside diphosphate biosynthesis" +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside diphosphate formation" -### supinator muscle `http://purl.obolibrary.org/obo/UBERON_0003228` +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -#### Added -- [supinator muscle](http://purl.obolibrary.org/obo/UBERON_0003228) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -- [supinator muscle](http://purl.obolibrary.org/obo/UBERON_0003228) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668)) -### suprahyoid muscle `http://purl.obolibrary.org/obo/UBERON_0008571` +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) -#### Added -- [suprahyoid muscle](http://purl.obolibrary.org/obo/UBERON_0008571) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) SubClassOf [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) -- [suprahyoid muscle](http://purl.obolibrary.org/obo/UBERON_0008571) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside diphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009188) SubClassOf [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) -### supraspinatus muscle `http://purl.obolibrary.org/obo/UBERON_0002383` +### ribonucleoside diphosphate catabolic process `http://purl.obolibrary.org/obo/GO_0009191` #### Added -- [supraspinatus muscle](http://purl.obolibrary.org/obo/UBERON_0002383) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [supraspinatus muscle](http://purl.obolibrary.org/obo/UBERON_0002383) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside diphosphate catabolic process" +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009191" -### synaptic signaling `http://purl.obolibrary.org/obo/GO_0099536` +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -#### Added -- [synaptic signaling](http://purl.obolibrary.org/obo/GO_0099536) SubClassOf [only in taxon](http://purl.obolibrary.org/obo/RO_0002160) some [Metazoa](http://purl.obolibrary.org/obo/NCBITaxon_33208) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -- [synaptic signaling](http://purl.obolibrary.org/obo/GO_0099536) SubClassOf [in taxon](http://purl.obolibrary.org/obo/RO_0002162) only [Metazoa](http://purl.obolibrary.org/obo/NCBITaxon_33208) +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside diphosphate catabolism" +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside diphosphate degradation" -### synovial cavity of joint `http://purl.obolibrary.org/obo/UBERON_0007617` +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside diphosphate breakdown" -#### Added -- [synovial cavity of joint](http://purl.obolibrary.org/obo/UBERON_0007617) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) -- [synovial cavity of joint](http://purl.obolibrary.org/obo/UBERON_0007617) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668)) +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) -### talus `http://purl.obolibrary.org/obo/UBERON_0002395` +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) SubClassOf [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) -#### Added -- [talus](http://purl.obolibrary.org/obo/UBERON_0002395) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside diphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009191) SubClassOf [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) -- [talus](http://purl.obolibrary.org/obo/UBERON_0002395) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### ribonucleoside diphosphate metabolic process `http://purl.obolibrary.org/obo/GO_0009185` -### taste receptor cell `http://purl.obolibrary.org/obo/CL_0000209` -#### Removed -- [taste receptor cell](http://purl.obolibrary.org/obo/CL_0000209) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell type found in the spherical or ovoid clusters of receptor cells found mainly in the epithelium of the tongue and constituting the end organs of the sense of taste." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" +#### Added +- [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0618947256" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -- [taste receptor cell](http://purl.obolibrary.org/obo/CL_0000209) EquivalentTo [neuron](http://purl.obolibrary.org/obo/CL_0000540) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some [detection of chemical stimulus involved in sensory perception of taste](http://purl.obolibrary.org/obo/GO_0050912)) +- [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside diphosphate metabolic process" -- [taste receptor cell](http://purl.obolibrary.org/obo/CL_0000209) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [stratum basale of epidermis](http://purl.obolibrary.org/obo/UBERON_0002025) +- [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside diphosphate metabolism" -- [taste receptor cell](http://purl.obolibrary.org/obo/CL_0000209) SubClassOf [epidermal cell](http://purl.obolibrary.org/obo/CL_0000362) +- [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [taste receptor cell](http://purl.obolibrary.org/obo/CL_0000209) SubClassOf [develops from](http://purl.obolibrary.org/obo/RO_0002202) some [neuroblast (sensu Vertebrata)](http://purl.obolibrary.org/obo/CL_0000031) +- [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009185" -- [taste receptor cell](http://purl.obolibrary.org/obo/CL_0000209) SubClassOf [neuronal receptor cell](http://purl.obolibrary.org/obo/CL_0000006) +- Class: [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) -#### Added -- [taste receptor cell](http://purl.obolibrary.org/obo/CL_0000209) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A specialized cell involved in gustatory sensory perception." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" +- [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668)) - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0618947256" +- [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) SubClassOf [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) -- [taste receptor cell](http://purl.obolibrary.org/obo/CL_0000209) EquivalentTo [chemoreceptor cell](http://purl.obolibrary.org/obo/CL_0000206) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some [detection of chemical stimulus involved in sensory perception of taste](http://purl.obolibrary.org/obo/GO_0050912)) +- [ribonucleoside diphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009185) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ribonucleoside diphosphate](http://purl.obolibrary.org/obo/CHEBI_17668) -### taste receptor cell of tongue `http://purl.obolibrary.org/obo/CL_4033049` +### ribonucleoside metabolic process `http://purl.obolibrary.org/obo/GO_0009119` #### Added -- [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) [label](http://www.w3.org/2000/01/rdf-schema#label) "taste receptor cell of tongue" +- [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:jl" -- [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A taste receptor cell that is part of a taste bud of a tongue." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "http://www.nejohnston.org/Birds/documents/AvianTongues_Johnston.pdf" +- [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009119" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.1111/j.1096-3642.1981.tb01137.x" +- [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside metabolism" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28655883" +- [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside metabolic process" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:10052456" +- Class: [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) -- [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254)) -- [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "gustatory cell of tongue" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.1016/s0022-5320(69)80043-2" +- [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) SubClassOf [nucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009116) -- [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) [date](http://purl.org/dc/terms/date) "2023-05-03T07:59:58Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [ribonucleoside metabolic process](http://purl.obolibrary.org/obo/GO_0009119) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ribonucleoside](http://purl.obolibrary.org/obo/CHEBI_18254) -- Class: [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) -- [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) EquivalentTo [taste receptor cell](http://purl.obolibrary.org/obo/CL_0000209) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [tongue taste bud](http://purl.obolibrary.org/obo/UBERON_0014451)) +### ribonucleoside triphosphate `http://purl.obolibrary.org/obo/CHEBI_17972` -- [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) SubClassOf [epithelial cell of alimentary canal](http://purl.obolibrary.org/obo/CL_0002251) +#### Added +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -- [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [tongue taste bud](http://purl.obolibrary.org/obo/UBERON_0014451) +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Ribonucleoside triphosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG_COMPOUND" -- [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) SubClassOf [neural cell](http://purl.obolibrary.org/obo/CL_0002319) +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "372.94908" -- [taste receptor cell of tongue](http://purl.obolibrary.org/obo/CL_4033049) SubClassOf [taste receptor cell](http://purl.obolibrary.org/obo/CL_0000209) +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:8846" +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:26559" -### temporal bone `http://purl.obolibrary.org/obo/UBERON_0001678` +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -#### Added -- [temporal bone](http://purl.obolibrary.org/obo/UBERON_0001678) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [mass](http://purl.obolibrary.org/obo/chebi/mass) "373.063" -- [temporal bone](http://purl.obolibrary.org/obo/UBERON_0001678) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:15047" +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:17972" -### temporal process of zygomatic bone `http://purl.obolibrary.org/obo/UBERON_0004654` +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [temporal process of zygomatic bone](http://purl.obolibrary.org/obo/UBERON_0004654) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside triphosphate" -- [temporal process of zygomatic bone](http://purl.obolibrary.org/obo/UBERON_0004654) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H12O13P3R" +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "KEGG:C03802" -### temporalis muscle `http://purl.obolibrary.org/obo/UBERON_0001598` +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside triphosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -#### Added -- [temporalis muscle](http://purl.obolibrary.org/obo/UBERON_0001598) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) -- [temporalis muscle](http://purl.obolibrary.org/obo/UBERON_0001598) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) SubClassOf [nucleoside 5'-triphoshate](http://purl.obolibrary.org/obo/CHEBI_17326) -### tensor tympani `http://purl.obolibrary.org/obo/UBERON_0001600` +### ribonucleoside triphosphate biosynthetic process `http://purl.obolibrary.org/obo/GO_0009201` #### Added -- [tensor tympani](http://purl.obolibrary.org/obo/UBERON_0001600) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009201" -- [tensor tympani](http://purl.obolibrary.org/obo/UBERON_0001600) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside triphosphate anabolism" +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside triphosphate formation" -### tensor veli palatini `http://purl.obolibrary.org/obo/UBERON_0008586` +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside triphosphate biosynthetic process" -#### Added -- [tensor veli palatini](http://purl.obolibrary.org/obo/UBERON_0008586) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [tensor veli palatini](http://purl.obolibrary.org/obo/UBERON_0008586) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside triphosphate biosynthesis" -### tenth thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006466` +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -#### Added -- [tenth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006466) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside triphosphate synthesis" -- [tenth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006466) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972)) -### teres major muscle `http://purl.obolibrary.org/obo/UBERON_0001478` +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) SubClassOf [nucleoside phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_1901293) -#### Added -- [teres major muscle](http://purl.obolibrary.org/obo/UBERON_0001478) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) SubClassOf [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) -- [teres major muscle](http://purl.obolibrary.org/obo/UBERON_0001478) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0009201) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) -### teres minor muscle `http://purl.obolibrary.org/obo/UBERON_0010496` +### ribonucleoside triphosphate catabolic process `http://purl.obolibrary.org/obo/GO_0009203` #### Added -- [teres minor muscle](http://purl.obolibrary.org/obo/UBERON_0010496) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside triphosphate degradation" -- [teres minor muscle](http://purl.obolibrary.org/obo/UBERON_0010496) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside triphosphate catabolic process" +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside triphosphate catabolism" -### term tracker item `http://purl.obolibrary.org/obo/IAO_0000233` +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -#### Added -- [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -- [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) [shorthand](http://www.geneontology.org/formats/oboInOwl#shorthand) "term_tracker_item" +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) [is_class_level](http://www.geneontology.org/formats/oboInOwl#is_class_level) true +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009203" -- [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "external" +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside triphosphate breakdown" -- [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IAO:0000233" +- Class: [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) -- [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) [id](http://www.geneontology.org/formats/oboInOwl#id) "term_tracker_item" +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972)) -- [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) [is_metadata_tag](http://www.geneontology.org/formats/oboInOwl#is_metadata_tag) true +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) SubClassOf [nucleoside phosphate catabolic process](http://purl.obolibrary.org/obo/GO_1901292) -- [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) [label](http://www.w3.org/2000/01/rdf-schema#label) "term tracker item" +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) +- [ribonucleoside triphosphate catabolic process](http://purl.obolibrary.org/obo/GO_0009203) SubClassOf [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) -### term_scheduled_for_obsoletion `http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion` + +### ribonucleoside triphosphate metabolic process `http://purl.obolibrary.org/obo/GO_0009199` #### Added -- AnnotationProperty: [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) +- [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009199" -- [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) SubPropertyOf: [subset_property](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) +- [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleoside triphosphate metabolism" +- [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -### tetrapod frontal bone `http://purl.obolibrary.org/obo/UBERON_0000209` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -#### Added -- [tetrapod frontal bone](http://purl.obolibrary.org/obo/UBERON_0000209) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [tetrapod frontal bone](http://purl.obolibrary.org/obo/UBERON_0000209) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside triphosphate metabolic process" +- Class: [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) -### tetrapod parietal bone `http://purl.obolibrary.org/obo/UBERON_0000210` +- [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972)) -#### Added -- [tetrapod parietal bone](http://purl.obolibrary.org/obo/UBERON_0000210) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ribonucleoside triphosphate](http://purl.obolibrary.org/obo/CHEBI_17972) -- [tetrapod parietal bone](http://purl.obolibrary.org/obo/UBERON_0000210) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate metabolic process](http://purl.obolibrary.org/obo/GO_0009199) SubClassOf [nucleoside phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0006753) -### thalamic excitatory neuron `http://purl.obolibrary.org/obo/CL_4023068` +### ribonucleoside triphosphate oxoanion `http://purl.obolibrary.org/obo/CHEBI_59724` #### Added -- [thalamic excitatory neuron](http://purl.obolibrary.org/obo/CL_4023068) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An organophosphate anion resulting from deprotonation of at least one of the acidic hydroxy groups from the triphosphate moiety of a nucleoside triphosphate." -- [thalamic excitatory neuron](http://purl.obolibrary.org/obo/CL_4023068) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside triphosphate anions" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### third lumbar spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006449` +- [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleoside triphosphate oxoanion" -#### Added -- [third lumbar spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006449) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [third lumbar spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006449) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside triphosphate anion" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" +- [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleoside triphosphate oxoanions" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### third sacral spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006462` +- [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:59724" -#### Added -- [third sacral spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006462) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) -- [third sacral spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006462) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_59724) SubClassOf [organophosphate oxoanion](http://purl.obolibrary.org/obo/CHEBI_58945) -### third thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006459` +### ribonucleoside triphosphate phosphatase activity `http://purl.obolibrary.org/obo/GO_0017111` #### Added -- [third thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006459) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate phosphatase activity](http://purl.obolibrary.org/obo/GO_0017111) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [nucleoside 5'-diphosphate(3-)](http://purl.obolibrary.org/obo/CHEBI_57930) -- [third thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006459) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleoside triphosphate phosphatase activity](http://purl.obolibrary.org/obo/GO_0017111) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [hydron](http://purl.obolibrary.org/obo/CHEBI_15378) +- [ribonucleoside triphosphate phosphatase activity](http://purl.obolibrary.org/obo/GO_0017111) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [hydrogenphosphate](http://purl.obolibrary.org/obo/CHEBI_43474) -### thoracic division of spinal cord central canal `http://purl.obolibrary.org/obo/UBERON_0014541` +- [ribonucleoside triphosphate phosphatase activity](http://purl.obolibrary.org/obo/GO_0017111) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [nucleoside 5'-triphoshate(4-)](http://purl.obolibrary.org/obo/CHEBI_61557) -#### Added -- [thoracic division of spinal cord central canal](http://purl.obolibrary.org/obo/UBERON_0014541) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [thoracic division of spinal cord central canal](http://purl.obolibrary.org/obo/UBERON_0014541) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleoside triphosphate phosphatase activity](http://purl.obolibrary.org/obo/GO_0017111) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [water](http://purl.obolibrary.org/obo/CHEBI_15377) -### thoracic skeleton `http://purl.obolibrary.org/obo/UBERON_0014477` +### ribonucleotide `http://purl.obolibrary.org/obo/CHEBI_26561` #### Added -- [thoracic skeleton](http://purl.obolibrary.org/obo/UBERON_0014477) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [thoracic skeleton](http://purl.obolibrary.org/obo/UBERON_0014477) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - +- [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26561" -### thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0003038` +- [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -#### Added -- [thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0003038) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribonucleotides" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0003038) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) +- [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleotide" -### thoracic spinal cord dorsal column `http://purl.obolibrary.org/obo/UBERON_0005839` +- Class: [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) -#### Added -- [thoracic spinal cord dorsal column](http://purl.obolibrary.org/obo/UBERON_0005839) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) SubClassOf [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) -- [thoracic spinal cord dorsal column](http://purl.obolibrary.org/obo/UBERON_0005839) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) SubClassOf [nucleotide](http://purl.obolibrary.org/obo/CHEBI_36976) -### thoracic spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0014609` +### ribonucleotide binding `http://purl.obolibrary.org/obo/GO_0032553` #### Added -- [thoracic spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014609) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [thoracic spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0014609) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032553) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Binding to a ribonucleotide, any compound consisting of a ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" +- [ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032553) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0032553" -### thoracic spinal cord gray commissure `http://purl.obolibrary.org/obo/UBERON_0026293` +- [ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032553) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleotide binding" -#### Added -- [thoracic spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0026293) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032553) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -- [thoracic spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0026293) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032553) +- [ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032553) EquivalentTo [binding](http://purl.obolibrary.org/obo/GO_0005488) and ([has input](http://purl.obolibrary.org/obo/RO_0002233) some [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561)) -### thoracic spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0014636` +- [ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032553) SubClassOf [nucleotide binding](http://purl.obolibrary.org/obo/GO_0000166) -#### Added -- [thoracic spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0014636) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032553) SubClassOf [has input](http://purl.obolibrary.org/obo/RO_0002233) some [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) -- [thoracic spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0014636) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide binding](http://purl.obolibrary.org/obo/GO_0032553) SubClassOf [carbohydrate derivative binding](http://purl.obolibrary.org/obo/GO_0097367) -### thoracic spinal cord lateral column `http://purl.obolibrary.org/obo/UBERON_0005847` +### ribonucleotide biosynthetic process `http://purl.obolibrary.org/obo/GO_0009260` #### Added -- [thoracic spinal cord lateral column](http://purl.obolibrary.org/obo/UBERON_0005847) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" + +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" -- [thoracic spinal cord lateral column](http://purl.obolibrary.org/obo/UBERON_0005847) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleotide anabolism" -### thoracic spinal cord lateral horn `http://purl.obolibrary.org/obo/UBERON_0014607` +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleotide biosynthesis" -#### Added -- [thoracic spinal cord lateral horn](http://purl.obolibrary.org/obo/UBERON_0014607) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009260" -- [thoracic spinal cord lateral horn](http://purl.obolibrary.org/obo/UBERON_0014607) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleotide synthesis" +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleotide formation" -### thoracic spinal cord ventral column `http://purl.obolibrary.org/obo/UBERON_0005852` +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleotide biosynthetic process" -#### Added -- [thoracic spinal cord ventral column](http://purl.obolibrary.org/obo/UBERON_0005852) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) -- [thoracic spinal cord ventral column](http://purl.obolibrary.org/obo/UBERON_0005852) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561)) +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) -### thoracic spinal cord ventral commissure `http://purl.obolibrary.org/obo/UBERON_0007837` +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) SubClassOf [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) -#### Added -- [thoracic spinal cord ventral commissure](http://purl.obolibrary.org/obo/UBERON_0007837) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) SubClassOf [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) -- [thoracic spinal cord ventral commissure](http://purl.obolibrary.org/obo/UBERON_0007837) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009260) SubClassOf [nucleotide biosynthetic process](http://purl.obolibrary.org/obo/GO_0009165) -### thoracic spinal cord ventral horn `http://purl.obolibrary.org/obo/UBERON_0014610` +### ribonucleotide catabolic process `http://purl.obolibrary.org/obo/GO_0009261` #### Added -- [thoracic spinal cord ventral horn](http://purl.obolibrary.org/obo/UBERON_0014610) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleotide catabolic process" -- [thoracic spinal cord ventral horn](http://purl.obolibrary.org/obo/UBERON_0014610) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleotide catabolism" -### thoracic spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0014637` +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009261" -#### Added -- [thoracic spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0014637) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleotide degradation" -- [thoracic spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0014637) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the breakdown of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -### thoracic subsegment of spinal cord `http://purl.obolibrary.org/obo/UBERON_0007715` +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleotide breakdown" -#### Added -- [thoracic subsegment of spinal cord](http://purl.obolibrary.org/obo/UBERON_0007715) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) -- [thoracic subsegment of spinal cord](http://purl.obolibrary.org/obo/UBERON_0007715) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) EquivalentTo [catabolic process](http://purl.obolibrary.org/obo/GO_0009056) and ([has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561)) +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) SubClassOf [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) -### thoracic vertebra `http://purl.obolibrary.org/obo/UBERON_0002347` +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) SubClassOf [nucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009166) -#### Added -- [thoracic vertebra](http://purl.obolibrary.org/obo/UBERON_0002347) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) SubClassOf [carbohydrate derivative catabolic process](http://purl.obolibrary.org/obo/GO_1901136) -- [thoracic vertebra](http://purl.obolibrary.org/obo/UBERON_0002347) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide catabolic process](http://purl.obolibrary.org/obo/GO_0009261) SubClassOf [has primary input](http://purl.obolibrary.org/obo/RO_0004009) some [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) -### thoracic vertebra 1 `http://purl.obolibrary.org/obo/UBERON_0004626` +### ribonucleotide metabolic process `http://purl.obolibrary.org/obo/GO_0009259` #### Added -- [thoracic vertebra 1](http://purl.obolibrary.org/obo/UBERON_0004626) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [thoracic vertebra 1](http://purl.obolibrary.org/obo/UBERON_0004626) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0009259" +- [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribonucleotide metabolic process" -### thoracic vertebra 10 `http://purl.obolibrary.org/obo/UBERON_0004634` - -#### Added -- [thoracic vertebra 10](http://purl.obolibrary.org/obo/UBERON_0004634) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [thoracic vertebra 10](http://purl.obolibrary.org/obo/UBERON_0004634) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:go_curators" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:0198506732" -### thoracic vertebra 11 `http://purl.obolibrary.org/obo/UBERON_0004635` +- [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribonucleotide metabolism" -#### Added -- [thoracic vertebra 11](http://purl.obolibrary.org/obo/UBERON_0004635) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0009121" -- [thoracic vertebra 11](http://purl.obolibrary.org/obo/UBERON_0004635) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) +- [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561)) -### thoracic vertebra 12 `http://purl.obolibrary.org/obo/UBERON_0004636` +- [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) SubClassOf [nucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009117) -#### Added -- [thoracic vertebra 12](http://purl.obolibrary.org/obo/UBERON_0004636) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) SubClassOf [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) -- [thoracic vertebra 12](http://purl.obolibrary.org/obo/UBERON_0004636) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribonucleotide metabolic process](http://purl.obolibrary.org/obo/GO_0009259) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ribonucleotide](http://purl.obolibrary.org/obo/CHEBI_26561) -### thoracic vertebra 2 `http://purl.obolibrary.org/obo/UBERON_0004627` +### ribose `http://purl.obolibrary.org/obo/CHEBI_33942` #### Added -- [thoracic vertebra 2](http://purl.obolibrary.org/obo/UBERON_0004627) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [formula](http://purl.obolibrary.org/obo/chebi/formula) "C5H10O5" -- [thoracic vertebra 2](http://purl.obolibrary.org/obo/UBERON_0004627) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "Rib" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "JCBN" +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [mass](http://purl.obolibrary.org/obo/chebi/mass) "150.130" -### thoracic vertebra 3 `http://purl.obolibrary.org/obo/UBERON_0004628` - -#### Added -- [thoracic vertebra 3](http://purl.obolibrary.org/obo/UBERON_0004628) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [charge](http://purl.obolibrary.org/obo/chebi/charge) "0" -- [thoracic vertebra 3](http://purl.obolibrary.org/obo/UBERON_0004628) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:33942" +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "CHEBI:26564" -### thoracic vertebra 4 `http://purl.obolibrary.org/obo/UBERON_0004629` +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [monoisotopicmass](http://purl.obolibrary.org/obo/chebi/monoisotopicmass) "150.05282" -#### Added -- [thoracic vertebra 4](http://purl.obolibrary.org/obo/UBERON_0004629) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [thoracic vertebra 4](http://purl.obolibrary.org/obo/UBERON_0004629) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribose" -### thoracic vertebra 5 `http://purl.obolibrary.org/obo/UBERON_0004630` +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Any aldopentose where the open-chain form has all the hydroxy groups on the same side in the Fischer projection. Occurrs in two enantiomeric forms, D- and L-ribose, of which only the former is found in nature." -#### Added -- [thoracic vertebra 5](http://purl.obolibrary.org/obo/UBERON_0004630) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -- [thoracic vertebra 5](http://purl.obolibrary.org/obo/UBERON_0004630) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribo-pentose" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "IUPAC" -### thoracic vertebra 6 `http://purl.obolibrary.org/obo/UBERON_0004631` + - [has_synonym_type](http://www.geneontology.org/formats/oboInOwl#hasSynonymType) [IUPAC_NAME](http://purl.obolibrary.org/obo/chebi#IUPAC_NAME) -#### Added -- [thoracic vertebra 6](http://purl.obolibrary.org/obo/UBERON_0004631) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) -- [thoracic vertebra 6](http://purl.obolibrary.org/obo/UBERON_0004631) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribose](http://purl.obolibrary.org/obo/CHEBI_33942) SubClassOf [aldopentose](http://purl.obolibrary.org/obo/CHEBI_33916) -### thoracic vertebra 7 `http://purl.obolibrary.org/obo/UBERON_0004632` +### ribose phosphate `http://purl.obolibrary.org/obo/CHEBI_26562` #### Added -- [thoracic vertebra 7](http://purl.obolibrary.org/obo/UBERON_0004632) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [thoracic vertebra 7](http://purl.obolibrary.org/obo/UBERON_0004632) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - +- [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ribose phosphates" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### thoracic vertebra 8 `http://purl.obolibrary.org/obo/UBERON_0011050` +- [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribose phosphate" -#### Added -- [thoracic vertebra 8](http://purl.obolibrary.org/obo/UBERON_0011050) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribose phosphate" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -- [thoracic vertebra 8](http://purl.obolibrary.org/obo/UBERON_0011050) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:26562" +- [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" -### thoracic vertebra 9 `http://purl.obolibrary.org/obo/UBERON_0004633` +- [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -#### Added -- [thoracic vertebra 9](http://purl.obolibrary.org/obo/UBERON_0004633) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- Class: [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) -- [thoracic vertebra 9](http://purl.obolibrary.org/obo/UBERON_0004633) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) SubClassOf [aldopentose phosphate](http://purl.obolibrary.org/obo/CHEBI_25900) -### thoracolumbar junction `http://purl.obolibrary.org/obo/UBERON_8480051` +### ribose phosphate biosynthetic process `http://purl.obolibrary.org/obo/GO_0046390` #### Added -- [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" - -- [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8480051" +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways resulting in the formation of ribose phosphate, any phosphorylated ribose sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" -- [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "thora-columbar junction" - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:27441179" +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0046390" -- [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) [label](http://www.w3.org/2000/01/rdf-schema#label) "thoracolumbar junction" +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribose phosphate biosynthesis" -- [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) [date](http://purl.org/dc/terms/date) "2023-04-26T07:26:56Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribose phosphate biosynthetic process" -- [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-0819-0473](https://orcid.org/0000-0002-0819-0473) +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Area of transition between the posterior curvature of the thoracic spine and the anterior curvature of the lumbar spine." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:29399115" +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribose phosphate anabolism" -- Class: [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribose phosphate synthesis" -- [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) SubClassOf [organ part](http://purl.obolibrary.org/obo/UBERON_0000064) +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribose phosphate formation" -- [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) SubClassOf [anatomical entity](http://purl.obolibrary.org/obo/CARO_0000000) +- Class: [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) -- [thoracolumbar junction](http://purl.obolibrary.org/obo/UBERON_8480051) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [trunk region of vertebral column](http://purl.obolibrary.org/obo/UBERON_0009568) +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) EquivalentTo [biosynthetic process](http://purl.obolibrary.org/obo/GO_0009058) and ([has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562)) +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) SubClassOf [carbohydrate derivative biosynthetic process](http://purl.obolibrary.org/obo/GO_1901137) -### thyrohyoid muscle `http://purl.obolibrary.org/obo/UBERON_0001110` +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) SubClassOf [organophosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0090407) -#### Added -- [thyrohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001110) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) SubClassOf [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) -- [thyrohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001110) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribose phosphate biosynthetic process](http://purl.obolibrary.org/obo/GO_0046390) SubClassOf [has primary output](http://purl.obolibrary.org/obo/RO_0004008) some [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) -### tibia `http://purl.obolibrary.org/obo/UBERON_0000979` +### ribose phosphate metabolic process `http://purl.obolibrary.org/obo/GO_0019693` #### Added -- [tibia](http://purl.obolibrary.org/obo/UBERON_0000979) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) [label](http://www.w3.org/2000/01/rdf-schema#label) "ribose phosphate metabolic process" -- [tibia](http://purl.obolibrary.org/obo/UBERON_0000979) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0019693" +- [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "The chemical reactions and pathways involving ribose phosphate, any phosphorylated ribose sugar." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:ai" -### tibial plateaux `http://purl.obolibrary.org/obo/UBERON_0004098` -#### Removed -- [tibial plateaux](http://purl.obolibrary.org/obo/UBERON_0004098) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "biological_process" -- [tibial plateaux](http://purl.obolibrary.org/obo/UBERON_0004098) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ribose phosphate metabolism" +- Class: [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) +- [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) EquivalentTo [metabolic process](http://purl.obolibrary.org/obo/GO_0008152) and ([has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562)) -### tonsil `http://purl.obolibrary.org/obo/UBERON_0002372` +- [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) SubClassOf [carbohydrate derivative metabolic process](http://purl.obolibrary.org/obo/GO_1901135) -#### Added -- [tonsil](http://purl.obolibrary.org/obo/UBERON_0002372) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) SubClassOf [phosphate-containing compound metabolic process](http://purl.obolibrary.org/obo/GO_0006796) -- [tonsil](http://purl.obolibrary.org/obo/UBERON_0002372) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) SubClassOf [organophosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019637) +- [ribose phosphate metabolic process](http://purl.obolibrary.org/obo/GO_0019693) SubClassOf [has primary input or output](http://purl.obolibrary.org/obo/RO_0004007) some [ribose phosphate](http://purl.obolibrary.org/obo/CHEBI_26562) -### tonsil capsule `http://purl.obolibrary.org/obo/UBERON_0005207` -#### Added -- [tonsil capsule](http://purl.obolibrary.org/obo/UBERON_0005207) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### secretory granule maturation `http://purl.obolibrary.org/obo/GO_0061792` +#### Removed +- [secretory granule maturation](http://purl.obolibrary.org/obo/GO_0061792) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Steps required to transform an immature secretory vesicle into a mature secretory vesicle. Typically proceeds through homotypic membrane fusion and membrane remodelling." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" -- [tonsil capsule](http://purl.obolibrary.org/obo/UBERON_0005207) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:bf" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:PARL" -### tonsil crypt `http://purl.obolibrary.org/obo/UBERON_0012181` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:16618809" #### Added -- [tonsil crypt](http://purl.obolibrary.org/obo/UBERON_0012181) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [secretory granule maturation](http://purl.obolibrary.org/obo/GO_0061792) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Steps required to transform an immature secretory vesicle into a mature secretory vesicle. Typically proceeds through homotypic membrane fusion and membrane remodeling." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" -- [tonsil crypt](http://purl.obolibrary.org/obo/UBERON_0012181) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:bf" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:PARL" -### tonsil epithelium `http://purl.obolibrary.org/obo/UBERON_0013696` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:16618809" -#### Added -- [tonsil epithelium](http://purl.obolibrary.org/obo/UBERON_0013696) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) -- [tonsil epithelium](http://purl.obolibrary.org/obo/UBERON_0013696) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### segmental bronchus `http://purl.obolibrary.org/obo/UBERON_0002184` +#### Added +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [cartilage of bronchus](http://purl.obolibrary.org/obo/UBERON_0001956) -### tonsil germinal center `http://purl.obolibrary.org/obo/UBERON_0013688` +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [lung mesenchyme](http://purl.obolibrary.org/obo/UBERON_0004883) -#### Added -- [tonsil germinal center](http://purl.obolibrary.org/obo/UBERON_0013688) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [bronchus smooth muscle](http://purl.obolibrary.org/obo/UBERON_0004242) -- [tonsil germinal center](http://purl.obolibrary.org/obo/UBERON_0013688) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [segmental bronchus](http://purl.obolibrary.org/obo/UBERON_0002184) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [bronchus submucosal gland](http://purl.obolibrary.org/obo/UBERON_8410043) -### tonsil squamous cell `http://purl.obolibrary.org/obo/CL_1001577` +### smooth muscle cell `http://purl.obolibrary.org/obo/CL_0000192` #### Added -- [tonsil squamous cell](http://purl.obolibrary.org/obo/CL_1001577) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [smooth muscle cell](http://purl.obolibrary.org/obo/CL_0000192) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [tonsil squamous cell](http://purl.obolibrary.org/obo/CL_1001577) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### sodium ion transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015081` -### trabecular bone tissue `http://purl.obolibrary.org/obo/UBERON_0002483` -#### Removed -- [trabecular bone tissue](http://purl.obolibrary.org/obo/UBERON_0002483) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [trabecular bone tissue](http://purl.obolibrary.org/obo/UBERON_0002483) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [sodium ion transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015081) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [sodium(1+)](http://purl.obolibrary.org/obo/CHEBI_29101) +### stem cell `http://purl.obolibrary.org/obo/CL_0000034` -### trachea blood vessel `http://purl.obolibrary.org/obo/UBERON_0003505` -#### Removed -- [trachea blood vessel](http://purl.obolibrary.org/obo/UBERON_0003505) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +#### Added +- [stem cell](http://purl.obolibrary.org/obo/CL_0000034) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -- [trachea blood vessel](http://purl.obolibrary.org/obo/UBERON_0003505) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### stem cell differentiation `http://purl.obolibrary.org/obo/GO_0048863` +#### Added +- [stem cell differentiation](http://purl.obolibrary.org/obo/GO_0048863) [never in taxon](http://purl.obolibrary.org/obo/RO_0002161) [Fungi](http://purl.obolibrary.org/obo/NCBITaxon_4751) -### trachea elastic tissue `http://purl.obolibrary.org/obo/UBERON_0003617` +- [stem cell differentiation](http://purl.obolibrary.org/obo/GO_0048863) DisjointWith [in taxon](http://purl.obolibrary.org/obo/RO_0002162) some [Fungi](http://purl.obolibrary.org/obo/NCBITaxon_4751) -#### Added -- [trachea elastic tissue](http://purl.obolibrary.org/obo/UBERON_0003617) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [stem cell differentiation](http://purl.obolibrary.org/obo/GO_0048863) SubClassOf not ([in taxon](http://purl.obolibrary.org/obo/RO_0002162) some [Fungi](http://purl.obolibrary.org/obo/NCBITaxon_4751)) -- [trachea elastic tissue](http://purl.obolibrary.org/obo/UBERON_0003617) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [stem cell differentiation](http://purl.obolibrary.org/obo/GO_0048863) SubClassOf [in taxon](http://purl.obolibrary.org/obo/RO_0002162) some (not ([Fungi](http://purl.obolibrary.org/obo/NCBITaxon_4751))) -### trachea non-cartilage connective tissue `http://purl.obolibrary.org/obo/UBERON_0009644` +### stromal cell `http://purl.obolibrary.org/obo/CL_0000499` #### Added -- [trachea non-cartilage connective tissue](http://purl.obolibrary.org/obo/UBERON_0009644) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) - -- [trachea non-cartilage connective tissue](http://purl.obolibrary.org/obo/UBERON_0009644) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [stromal cell](http://purl.obolibrary.org/obo/CL_0000499) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [general_cell_types_upper_slim](http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim) -### tracheal epithelial cell `http://purl.obolibrary.org/obo/CL_0000307` +### stromal cell of thymus `http://purl.obolibrary.org/obo/CL_4030001` #### Removed -- [tracheal epithelial cell](http://purl.obolibrary.org/obo/CL_0000307) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00005038" +- [stromal cell of thymus](http://purl.obolibrary.org/obo/CL_4030001) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A stromal cell that is part of the thymus." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) [s41467-020-20082-7](https://www.nature.com/articles/s41467-020-20082-7) #### Added -- [tracheal epithelial cell](http://purl.obolibrary.org/obo/CL_0000307) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [stromal cell of thymus](http://purl.obolibrary.org/obo/CL_4030001) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A stromal cell that is part of the thymus." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1038/s41467-020-20082-7" -- [tracheal epithelial cell](http://purl.obolibrary.org/obo/CL_0000307) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -### tracheal submucosal gland ciliated duct `http://purl.obolibrary.org/obo/UBERON_8600011` +### subsegmental bronchus `http://purl.obolibrary.org/obo/UBERON_8600009` #### Added -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [subsegmental bronchus](http://purl.obolibrary.org/obo/UBERON_8600009) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [cartilage of bronchus](http://purl.obolibrary.org/obo/UBERON_0001956) -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) [date](http://purl.org/dc/terms/date) "2023-05-02T08:08:14Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [subsegmental bronchus](http://purl.obolibrary.org/obo/UBERON_8600009) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [bronchus smooth muscle](http://purl.obolibrary.org/obo/UBERON_0004242) -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) [contributor](http://purl.org/dc/terms/contributor) [0000-0002-9185-3994](https://orcid.org/0000-0002-9185-3994) +- [subsegmental bronchus](http://purl.obolibrary.org/obo/UBERON_8600009) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [bronchus submucosal gland](http://purl.obolibrary.org/obo/UBERON_8410043) -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [subsegmental bronchus](http://purl.obolibrary.org/obo/UBERON_8600009) SubClassOf [has part](http://purl.obolibrary.org/obo/BFO_0000051) some [lung mesenchyme](http://purl.obolibrary.org/obo/UBERON_0004883) -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A ciliated duct part of a tracheal submucosal gland." - - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30864819" -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) [label](http://www.w3.org/2000/01/rdf-schema#label) "tracheal submucosal gland ciliated duct" +### sulfate transmembrane transporter activity `http://purl.obolibrary.org/obo/GO_0015116` -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600011" - -- Class: [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) - -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) EquivalentTo [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [trachea gland](http://purl.obolibrary.org/obo/UBERON_0005203)) - -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [trachea gland](http://purl.obolibrary.org/obo/UBERON_0005203) - -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) SubClassOf [endoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004119) - -- [tracheal submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600011) SubClassOf [submucosal gland ciliated duct](http://purl.obolibrary.org/obo/UBERON_8600014) +#### Added +- [sulfate transmembrane transporter activity](http://purl.obolibrary.org/obo/GO_0015116) SubClassOf [has participant](http://purl.obolibrary.org/obo/RO_0000057) some [sulfate](http://purl.obolibrary.org/obo/CHEBI_16189) -### trachealis `http://purl.obolibrary.org/obo/UBERON_0006680` +### supraorbital foramen `http://purl.obolibrary.org/obo/UBERON_8500002` #### Added -- [trachealis](http://purl.obolibrary.org/obo/UBERON_0006680) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [supraorbital foramen](http://purl.obolibrary.org/obo/UBERON_8500002) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8500002" -- [trachealis](http://purl.obolibrary.org/obo/UBERON_0006680) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [supraorbital foramen](http://purl.obolibrary.org/obo/UBERON_8500002) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- [supraorbital foramen](http://purl.obolibrary.org/obo/UBERON_8500002) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-8415-4848](https://orcid.org/0000-0001-8415-4848) -### tracheobronchial serous cell `http://purl.obolibrary.org/obo/CL_0019001` +- [supraorbital foramen](http://purl.obolibrary.org/obo/UBERON_8500002) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A bony elongated opening located above the orbit and under the forehead." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://en.wikipedia.org/wiki/Supraorbital_foramen" -#### Added -- [tracheobronchial serous cell](http://purl.obolibrary.org/obo/CL_0019001) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) +- [supraorbital foramen](http://purl.obolibrary.org/obo/UBERON_8500002) [label](http://www.w3.org/2000/01/rdf-schema#label) "supraorbital foramen" +- Class: [supraorbital foramen](http://purl.obolibrary.org/obo/UBERON_8500002) -### transversospinales muscle `http://purl.obolibrary.org/obo/UBERON_0010990` +- [supraorbital foramen](http://purl.obolibrary.org/obo/UBERON_8500002) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [tetrapod frontal bone](http://purl.obolibrary.org/obo/UBERON_0000209) -#### Added -- [transversospinales muscle](http://purl.obolibrary.org/obo/UBERON_0010990) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [supraorbital foramen](http://purl.obolibrary.org/obo/UBERON_8500002) SubClassOf [foramen of skull](http://purl.obolibrary.org/obo/UBERON_0013685) -- [transversospinales muscle](http://purl.obolibrary.org/obo/UBERON_0010990) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [supraorbital foramen](http://purl.obolibrary.org/obo/UBERON_8500002) SubClassOf [ectoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004121) -### transversus abdominis muscle `http://purl.obolibrary.org/obo/UBERON_0001221` +### supraorbitale `http://purl.obolibrary.org/obo/UBERON_8500003` #### Added -- [transversus abdominis muscle](http://purl.obolibrary.org/obo/UBERON_0001221) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [supraorbitale](http://purl.obolibrary.org/obo/UBERON_8500003) [label](http://www.w3.org/2000/01/rdf-schema#label) "supraorbitale" -- [transversus abdominis muscle](http://purl.obolibrary.org/obo/UBERON_0001221) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [supraorbitale](http://purl.obolibrary.org/obo/UBERON_8500003) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An anatomical point on the median point of the line joining the aboral borders of the supraorbital foramen." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ISBN:9780873659505" +- [supraorbitale](http://purl.obolibrary.org/obo/UBERON_8500003) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-8415-4848](https://orcid.org/0000-0001-8415-4848) -### transversus menti muscle `http://purl.obolibrary.org/obo/UBERON_0008609` +- [supraorbitale](http://purl.obolibrary.org/obo/UBERON_8500003) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8500003" -#### Added -- [transversus menti muscle](http://purl.obolibrary.org/obo/UBERON_0008609) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) - -- [transversus menti muscle](http://purl.obolibrary.org/obo/UBERON_0008609) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [supraorbitale](http://purl.obolibrary.org/obo/UBERON_8500003) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" +- Class: [supraorbitale](http://purl.obolibrary.org/obo/UBERON_8500003) -### trapezius muscle `http://purl.obolibrary.org/obo/UBERON_0002380` +- [supraorbitale](http://purl.obolibrary.org/obo/UBERON_8500003) SubClassOf [anatomical entity](http://purl.obolibrary.org/obo/CARO_0000000) -#### Added -- [trapezius muscle](http://purl.obolibrary.org/obo/UBERON_0002380) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [supraorbitale](http://purl.obolibrary.org/obo/UBERON_8500003) SubClassOf [anatomical point](http://purl.obolibrary.org/obo/UBERON_0006983) -- [trapezius muscle](http://purl.obolibrary.org/obo/UBERON_0002380) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [supraorbitale](http://purl.obolibrary.org/obo/UBERON_8500003) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [supraorbital foramen](http://purl.obolibrary.org/obo/UBERON_8500002) -### triceps brachii `http://purl.obolibrary.org/obo/UBERON_0001509` +### term_scheduled_for_obsoletion `http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion` +#### Removed +- AnnotationProperty: [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) -#### Added -- [triceps brachii](http://purl.obolibrary.org/obo/UBERON_0001509) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [term_scheduled_for_obsoletion](http://purl.obolibrary.org/obo/go#term_scheduled_for_obsoletion) SubPropertyOf: [subset_property](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -- [triceps brachii](http://purl.obolibrary.org/obo/UBERON_0001509) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### trochlea of humerus `http://purl.obolibrary.org/obo/UBERON_0000144` +### tetrahydrofuranol `http://purl.obolibrary.org/obo/CHEBI_47017` #### Added -- [trochlea of humerus](http://purl.obolibrary.org/obo/UBERON_0000144) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [tetrahydrofuranol](http://purl.obolibrary.org/obo/CHEBI_47017) [label](http://www.w3.org/2000/01/rdf-schema#label) "tetrahydrofuranol" -- [trochlea of humerus](http://purl.obolibrary.org/obo/UBERON_0000144) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [tetrahydrofuranol](http://purl.obolibrary.org/obo/CHEBI_47017) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "chebi_ontology" +- [tetrahydrofuranol](http://purl.obolibrary.org/obo/CHEBI_47017) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "tetrahydrofuranols" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "ChEBI" -### twelfth thoracic spinal cord segment `http://purl.obolibrary.org/obo/UBERON_0006468` +- [tetrahydrofuranol](http://purl.obolibrary.org/obo/CHEBI_47017) [id](http://www.geneontology.org/formats/oboInOwl#id) "CHEBI:47017" -#### Added -- [twelfth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006468) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [tetrahydrofuranol](http://purl.obolibrary.org/obo/CHEBI_47017) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [_STAR](http://purl.obolibrary.org/obo/chebi#3_STAR) -- [twelfth thoracic spinal cord segment](http://purl.obolibrary.org/obo/UBERON_0006468) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [tetrahydrofuranol](http://purl.obolibrary.org/obo/CHEBI_47017) +- [tetrahydrofuranol](http://purl.obolibrary.org/obo/CHEBI_47017) SubClassOf [oxolanes](http://purl.obolibrary.org/obo/CHEBI_26912) -### ulna `http://purl.obolibrary.org/obo/UBERON_0001424` + +### type II pneumocyte `http://purl.obolibrary.org/obo/CL_0002063` #### Added -- [ulna](http://purl.obolibrary.org/obo/UBERON_0001424) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [type II pneumocyte](http://purl.obolibrary.org/obo/CL_0002063) SubClassOf [develops from](http://purl.obolibrary.org/obo/RO_0002202) some [fetal pre-type II pneumocyte](http://purl.obolibrary.org/obo/CL_4040003) -- [ulna](http://purl.obolibrary.org/obo/UBERON_0001424) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### ubiquitin-like protein conjugating enzyme activity `http://purl.obolibrary.org/obo/GO_0061650` +#### Removed +- [ubiquitin-like protein conjugating enzyme activity](http://purl.obolibrary.org/obo/GO_0061650) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "E2" -### ulnare `http://purl.obolibrary.org/obo/UBERON_0002445` +- [ubiquitin-like protein conjugating enzyme activity](http://purl.obolibrary.org/obo/GO_0061650) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Isoenergetic transfer of a ubiquitin-like protein (ULP) from one protein to another via the reaction X-SCP + Y -> Y-SCP + X, where both the X-SCP and Y-SCP linkages are thioester bonds between the C-terminal amino acid of SCP and a sulfhydryl side group of a cysteine residue." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" #### Added -- [ulnare](http://purl.obolibrary.org/obo/UBERON_0002445) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ubiquitin-like protein conjugating enzyme activity](http://purl.obolibrary.org/obo/GO_0061650) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "E2" -- [ulnare](http://purl.obolibrary.org/obo/UBERON_0002445) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ubiquitin-like protein conjugating enzyme activity](http://purl.obolibrary.org/obo/GO_0061650) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Isoenergetic transfer of a ubiquitin-like protein (ULP) from one protein to another via the reaction X-SCP + Y = Y-SCP + X, where both the X-SCP and Y-SCP linkages are thioester bonds between the C-terminal amino acid of SCP and a sulfhydryl side group of a cysteine residue." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" -### vastus lateralis `http://purl.obolibrary.org/obo/UBERON_0001379` +### ubiquitin-like protein ligase activity `http://purl.obolibrary.org/obo/GO_0061659` +#### Removed +- [ubiquitin-like protein ligase activity](http://purl.obolibrary.org/obo/GO_0061659) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the transfer of a ubiquitin-like protein (ULP) to a substrate protein via the reaction X-ULP + S --> X + S-ULP, where X is either an E2 or E3 enzyme, the X-ULP linkage is a thioester bond, and the S-ULP linkage is an isopeptide bond between the C-terminal glycine of ULP and the epsilon-amino group of lysine residues in the substrate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" #### Added -- [vastus lateralis](http://purl.obolibrary.org/obo/UBERON_0001379) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ubiquitin-like protein ligase activity](http://purl.obolibrary.org/obo/GO_0061659) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the transfer of a ubiquitin-like protein (ULP) to a substrate protein via the reaction X-ULP + S = X + S-ULP, where X is either an E2 or E3 enzyme, the X-ULP linkage is a thioester bond, and the S-ULP linkage is an isopeptide bond between the C-terminal glycine of ULP and the epsilon-amino group of lysine residues in the substrate." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" -- [vastus lateralis](http://purl.obolibrary.org/obo/UBERON_0001379) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### ubiquitin-like protein peptidase activity `http://purl.obolibrary.org/obo/GO_0019783` +#### Removed +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:1904455" -### vastus medialis `http://purl.obolibrary.org/obo/UBERON_0001380` +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "small conjugating protein-specific isopeptidase activity" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" -#### Added -- [vastus medialis](http://purl.obolibrary.org/obo/UBERON_0001380) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:1904454" -- [vastus medialis](http://purl.obolibrary.org/obo/UBERON_0001380) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0140491" +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ubiquitin-like hydrolase activity" -### vein endothelial cell of respiratory system `http://purl.obolibrary.org/obo/CL_4033008` +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "molecular_function" -#### Added -- [vein endothelial cell of respiratory system](http://purl.obolibrary.org/obo/CL_4033008) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An isopeptidase activity that cleaves ubiquitin or ubiquitin-like proteins (ULP; e.g. ATG8, ISG15, NEDD8, SUMO) from target proteins." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:19489724" -- [vein endothelial cell of respiratory system](http://purl.obolibrary.org/obo/CL_4033008) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "ubiquitin-specific protease activity involved in negative regulation of ERAD pathway" +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ubiquitin-like protein-specific protease activity" -### vertebral bone 1 `http://purl.obolibrary.org/obo/UBERON_0001092` +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "ubiquitin-like-protein-specific protease activity" -#### Added -- [vertebral bone 1](http://purl.obolibrary.org/obo/UBERON_0001092) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ubiquitinyl-like hydrolase activity" -- [vertebral bone 1](http://purl.obolibrary.org/obo/UBERON_0001092) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/17398"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "ubiquitin-like specific protease activity" -### vertebral bone 2 `http://purl.obolibrary.org/obo/UBERON_0001093` +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "ubiquitin-like protein-specific isopeptidase activity" -#### Added -- [vertebral bone 2](http://purl.obolibrary.org/obo/UBERON_0001093) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "While ubiquitin-like proteins can be rarely linked to substrates via bonds other than isopeptide bonds, all known ubiquitin-like peptidases cleave the isopeptide bond." + +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "GO:0070138" -- [vertebral bone 2](http://purl.obolibrary.org/obo/UBERON_0001093) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [label](http://www.w3.org/2000/01/rdf-schema#label) "ubiquitin-like protein peptidase activity" +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "small conjugating protein-specific protease activity" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:dph" -### vertebral column `http://purl.obolibrary.org/obo/UBERON_0001130` +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "ubiquitin-specific protease activity involved in positive regulation of ERAD pathway" -#### Added -- [vertebral column](http://purl.obolibrary.org/obo/UBERON_0001130) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) [id](http://www.geneontology.org/formats/oboInOwl#id) "GO:0019783" -- [vertebral column](http://purl.obolibrary.org/obo/UBERON_0001130) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- Class: [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) +- [ubiquitin-like protein peptidase activity](http://purl.obolibrary.org/obo/GO_0019783) SubClassOf [peptidase activity](http://purl.obolibrary.org/obo/GO_0008233) -### vertebrate lens cell `http://purl.obolibrary.org/obo/CL_0002222` -#### Added -- [vertebrate lens cell](http://purl.obolibrary.org/obo/CL_0002222) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eye_upper_slim](http://purl.obolibrary.org/obo/cl#eye_upper_slim) +### ubiquitin-like protein transferase activity `http://purl.obolibrary.org/obo/GO_0019787` +#### Removed +- [ubiquitin-like protein transferase activity](http://purl.obolibrary.org/obo/GO_0019787) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y --> Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -### visual pigment cell `http://purl.obolibrary.org/obo/CL_0000149` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:10806345" -#### Added -- [visual pigment cell](http://purl.obolibrary.org/obo/CL_0000149) SubClassOf [animal cell](http://purl.obolibrary.org/obo/CL_0000548) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:10884686" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:rn" -### vocalis muscle `http://purl.obolibrary.org/obo/UBERON_0008577` +- [ubiquitin-like protein transferase activity](http://purl.obolibrary.org/obo/GO_0019787) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "E2" #### Added -- [vocalis muscle](http://purl.obolibrary.org/obo/UBERON_0008577) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ubiquitin-like protein transferase activity](http://purl.obolibrary.org/obo/GO_0019787) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y = Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" -- [vocalis muscle](http://purl.obolibrary.org/obo/UBERON_0008577) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:10806345" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:10884686" -### vomer `http://purl.obolibrary.org/obo/UBERON_0002396` + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:rn" -#### Added -- [vomer](http://purl.obolibrary.org/obo/UBERON_0002396) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [ubiquitin-like protein transferase activity](http://purl.obolibrary.org/obo/GO_0019787) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "E2" -- [vomer](http://purl.obolibrary.org/obo/UBERON_0002396) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ubiquitin-like protein transferase activity](http://purl.obolibrary.org/obo/GO_0019787) SubClassOf [catalytic activity, acting on a protein](http://purl.obolibrary.org/obo/GO_0140096) -### wall of pulmonary artery `http://purl.obolibrary.org/obo/UBERON_0036422` +### urothelial cell `http://purl.obolibrary.org/obo/CL_0000731` #### Removed -- [wall of pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0036422) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "transitional epithelial cell of urinary bladder" -- [wall of pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0036422) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "bladder transitional cell" +- [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MA:ma" -### zygomatic process of frontal bone `http://purl.obolibrary.org/obo/UBERON_0012109` +- [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) SubClassOf [transitional epithelial cell](http://purl.obolibrary.org/obo/CL_0000244) + - [is_inferred](http://www.geneontology.org/formats/oboInOwl#is_inferred) "true" #### Added -- [zygomatic process of frontal bone](http://purl.obolibrary.org/obo/UBERON_0012109) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell of a layer of transitional epithelium in the wall of the proximal urethra, bladder, ureter or renal pelvis, external to the lamina propria." + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:tfm" -- [zygomatic process of frontal bone](http://purl.obolibrary.org/obo/UBERON_0012109) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MA:ma" + - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1038/s41385-022-00565-0" -### zygomatic process of maxilla `http://purl.obolibrary.org/obo/UBERON_0016477` +- [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) SubClassOf [transitional epithelial cell](http://purl.obolibrary.org/obo/CL_0000244) -#### Added -- [zygomatic process of maxilla](http://purl.obolibrary.org/obo/UBERON_0016477) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -- [zygomatic process of maxilla](http://purl.obolibrary.org/obo/UBERON_0016477) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### urothelial cell of trigone of urinary bladder `http://purl.obolibrary.org/obo/CL_1000442` +#### Removed +- [urothelial cell of trigone of urinary bladder](http://purl.obolibrary.org/obo/CL_1000442) EquivalentTo [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [trigone of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001257)) + +- [urothelial cell of trigone of urinary bladder](http://purl.obolibrary.org/obo/CL_1000442) SubClassOf [bladder cell](http://purl.obolibrary.org/obo/CL_1001319) +- [urothelial cell of trigone of urinary bladder](http://purl.obolibrary.org/obo/CL_1000442) SubClassOf [mixed endoderm/mesoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0000077) -### zygomaticus major muscle `http://purl.obolibrary.org/obo/UBERON_0008593` +- [urothelial cell of trigone of urinary bladder](http://purl.obolibrary.org/obo/CL_1000442) SubClassOf [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) + - [is_inferred](http://www.geneontology.org/formats/oboInOwl#is_inferred) "true" #### Added -- [zygomaticus major muscle](http://purl.obolibrary.org/obo/UBERON_0008593) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [urothelial cell of trigone of urinary bladder](http://purl.obolibrary.org/obo/CL_1000442) EquivalentTo [urothelial cell](http://purl.obolibrary.org/obo/CL_0000731) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some +([urothelium](http://purl.obolibrary.org/obo/UBERON_0000365) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [trigone of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001257)))) + +- [urothelial cell of trigone of urinary bladder](http://purl.obolibrary.org/obo/CL_1000442) SubClassOf [part_of](http://purl.obolibrary.org/obo/BFO_0000050) some +([urothelium](http://purl.obolibrary.org/obo/UBERON_0000365) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some [trigone of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0001257))) -- [zygomaticus major muscle](http://purl.obolibrary.org/obo/UBERON_0008593) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [urothelial cell of trigone of urinary bladder](http://purl.obolibrary.org/obo/CL_1000442) SubClassOf [bladder urothelial cell](http://purl.obolibrary.org/obo/CL_1001428) -### zygomaticus minor muscle `http://purl.obolibrary.org/obo/UBERON_0008594` +### vesicle-mediated transport `http://purl.obolibrary.org/obo/GO_0016192` #### Added -- [zygomaticus minor muscle](http://purl.obolibrary.org/obo/UBERON_0008594) [present_in_taxon](http://purl.obolibrary.org/obo/RO_0002175) [Homo sapiens](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [vesicle-mediated transport](http://purl.obolibrary.org/obo/GO_0016192) [term tracker item](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/geneontology/go-ontology/issues/25421"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI) -- [zygomaticus minor muscle](http://purl.obolibrary.org/obo/UBERON_0008594) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [vesicle-mediated transport](http://purl.obolibrary.org/obo/GO_0016192) SubClassOf [cellular process](http://purl.obolibrary.org/obo/GO_0009987) diff --git a/src/ontology/imports/cl_terms.txt b/src/ontology/imports/cl_terms.txt index 7686d1fbcf..964b7b8490 100644 --- a/src/ontology/imports/cl_terms.txt +++ b/src/ontology/imports/cl_terms.txt @@ -1,2 +1,6 @@ CL:0000000 +CL:0002208 +CL:0002329 +CL:0011103 +CL:0017000 diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 5dc567b2b8..7b8db4be81 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-05-23") + +Annotation(owl:versionInfo "2023-07-07") Declaration(Class()) Declaration(Class()) @@ -38,9 +38,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -60,13 +57,16 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -81,18 +81,24 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -100,16 +106,20 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -118,6 +128,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -126,14 +137,19 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -155,6 +171,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -202,6 +219,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -212,6 +231,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -220,7 +241,19 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -229,12 +262,14 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -261,6 +296,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -276,6 +312,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -294,10 +331,12 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -323,6 +362,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -355,6 +395,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -383,14 +425,18 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -420,6 +466,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -428,8 +475,17 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -445,6 +501,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -488,7 +545,14 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -505,8 +569,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -537,13 +603,20 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -622,9 +695,13 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -635,6 +712,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -656,14 +734,20 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -732,6 +816,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -742,9 +827,11 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1225,6 +1312,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1296,6 +1384,12 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1348,6 +1442,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1507,6 +1602,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1558,6 +1654,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1575,6 +1672,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1593,7 +1691,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1639,12 +1739,14 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -1666,6 +1768,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2022,6 +2125,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2071,6 +2176,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2089,6 +2195,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2097,12 +2204,14 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2137,6 +2246,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2215,6 +2327,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2245,6 +2359,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2264,6 +2379,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2753,7 +2870,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2785,7 +2901,11 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2797,6 +2917,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2855,6 +2976,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2876,6 +2998,17 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2940,6 +3073,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2962,6 +3097,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3185,8 +3322,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3237,9 +3372,48 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3332,7 +3506,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3452,7 +3625,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3511,6 +3683,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3583,6 +3756,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3590,12 +3764,18 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3617,6 +3797,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3628,6 +3810,14 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3695,6 +3885,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3714,6 +3905,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3742,9 +3934,14 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3759,8 +3956,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3771,7 +3970,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4212,6 +4410,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4231,6 +4430,12 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4383,9 +4588,19 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4451,6 +4666,11 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4540,6 +4760,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4547,6 +4770,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4628,6 +4852,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4638,6 +4863,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4724,11 +4950,15 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4919,6 +5149,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4964,6 +5195,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5139,6 +5373,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5216,6 +5451,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5429,6 +5666,12 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5438,8 +5681,18 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5455,6 +5708,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6020,6 +6274,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6109,7 +6364,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6217,6 +6471,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6788,6 +7045,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6810,6 +7068,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6931,6 +7190,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7245,6 +7505,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7755,6 +8019,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7855,6 +8121,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7867,6 +8136,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7915,6 +8187,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7991,6 +8266,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7998,6 +8274,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8122,6 +8402,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8285,6 +8567,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8503,6 +8788,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8620,7 +8906,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9056,6 +9341,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9073,6 +9361,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10162,6 +10451,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10206,6 +10496,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10474,6 +10766,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11090,6 +11383,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11098,6 +11392,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11256,6 +11551,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11313,6 +11609,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11498,6 +11796,8 @@ Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) @@ -11627,6 +11927,7 @@ Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) +Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) @@ -11653,6 +11954,7 @@ Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) +Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) @@ -11668,6 +11970,15 @@ Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -11733,6 +12044,7 @@ Declaration(AnnotationProperty() Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -11751,7 +12063,6 @@ Declaration(AnnotationProperty() Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -11774,24 +12085,31 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -11819,6 +12137,9 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -11835,49 +12156,121 @@ Declaration(AnnotationProperty()) # Annotation Property: (example of usage) +AnnotationAssertion( "example of usage"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:OBI:"@en) AnnotationAssertion(rdfs:isDefinedBy ) AnnotationAssertion(rdfs:label "example of usage"@en) AnnotationAssertion(rdfs:label "example of usage") # Annotation Property: (definition) +AnnotationAssertion( "definition"@en) +AnnotationAssertion( ) +AnnotationAssertion( "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en) +AnnotationAssertion( "2012-04-05: +Barry Smith + +The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. + +Can you fix to something like: + +A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. + +Alan Ruttenberg + +Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. + +On the specifics of the proposed definition: + +We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. + +Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. + +We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. "@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:OBI:"@en) AnnotationAssertion(rdfs:isDefinedBy ) AnnotationAssertion(rdfs:label "definition"@en) AnnotationAssertion(rdfs:label "definition") # Annotation Property: (editor note) +AnnotationAssertion( "editor note"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:OBI:"@en) AnnotationAssertion(rdfs:isDefinedBy ) AnnotationAssertion(rdfs:label "editor note"@en) AnnotationAssertion(rdfs:label "editor note") +# Annotation Property: (has obsolescence reason) + +AnnotationAssertion( "has obsolescence reason"@en) +AnnotationAssertion( "Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification."@en) +AnnotationAssertion( "PERSON:Alan Ruttenberg"@en) +AnnotationAssertion( "PERSON:Melanie Courtot"@en) +AnnotationAssertion(rdfs:label "has obsolescence reason"@en) + # Annotation Property: (curator note) +AnnotationAssertion( "curator note"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An administrative note of use for a curator but of no use for a user"@en) +AnnotationAssertion( "PERSON:Alan Ruttenberg"@en) AnnotationAssertion(rdfs:isDefinedBy ) AnnotationAssertion(rdfs:label "curator note"@en) AnnotationAssertion(rdfs:label "curator note") # Annotation Property: (term tracker item) +AnnotationAssertion( "term tracker item"@en) +AnnotationAssertion( "the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An IRI or similar locator for a request or discussion of an ontology term."@en) +AnnotationAssertion( "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en) +AnnotationAssertion( "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en) AnnotationAssertion( "IAO:0000233") AnnotationAssertion( "external") AnnotationAssertion( "term_tracker_item") AnnotationAssertion( "true"^^xsd:boolean) AnnotationAssertion( "true"^^xsd:boolean) AnnotationAssertion( "term_tracker_item") +AnnotationAssertion(rdfs:comment "The 'tracker item' can associate a tracker with a specific ontology term."@en) +AnnotationAssertion(rdfs:label "term tracker item"@en) AnnotationAssertion(rdfs:label "term tracker item") # Annotation Property: (expand assertion to) +AnnotationAssertion( "expand assertion to"@en) +AnnotationAssertion( "ObjectProperty: RO??? +Label: spatially disjoint from +Annotations: expand_assertion_to \"DisjointClasses: (http://purl.obolibrary.org/obo/BFO_0000051 some ?X) (http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\" +"@en) +AnnotationAssertion( "A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom."@en) +AnnotationAssertion( "Chris Mungall"@en) +AnnotationAssertion(rdfs:label "expand assertion to"@en) AnnotationAssertion(rdfs:label "expand assertion to") -# Annotation Property: (preferred_root) +# Annotation Property: (has ontology root term) +AnnotationAssertion( "has ontology root term"@en) +AnnotationAssertion( "Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root."@en) +AnnotationAssertion( "Nicolas Matentzoglu"@en) +AnnotationAssertion(rdfs:label "has ontology root term"@en) AnnotationAssertion(rdfs:label "preferred_root") # Annotation Property: (term replaced by) +AnnotationAssertion( "term replaced by"@en) AnnotationAssertion( ) +AnnotationAssertion( "Use on obsolete terms, relating the term to another term that can be used as a substitute"@en) +AnnotationAssertion( "Person:Alan Ruttenberg"@en) +AnnotationAssertion( "Person:Alan Ruttenberg"@en) +AnnotationAssertion(rdfs:comment "Add as annotation triples in the granting ontology"@en) AnnotationAssertion(rdfs:label "term replaced by"@en) AnnotationAssertion(rdfs:label "term replaced by") @@ -12087,6 +12480,10 @@ SubAnnotationPropertyOf( ) +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: () SubAnnotationPropertyOf( ) @@ -12159,10 +12556,6 @@ SubAnnotationPropertyOf( SubAnnotationPropertyOf( ) -# Annotation Property: () - -SubAnnotationPropertyOf( ) - # Annotation Property: () SubAnnotationPropertyOf( ) @@ -12247,10 +12640,18 @@ SubAnnotationPropertyOf( ) +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: () SubAnnotationPropertyOf( ) +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: () SubAnnotationPropertyOf( ) @@ -12273,19 +12674,34 @@ AnnotationAssertion(rdfs:label (has_broad_synonym) +AnnotationAssertion( "An alternative label for a class or property which has a more general meaning than the preferred name/primary label.") +AnnotationAssertion( ) +AnnotationAssertion( "https://github.com/information-artifact-ontology/ontology-metadata/issues/18") +AnnotationAssertion(rdfs:label "has broad synonym"@en) AnnotationAssertion(rdfs:label "has_broad_synonym") +AnnotationAssertion(rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/18") # Annotation Property: (database_cross_reference) AnnotationAssertion(rdfs:label "database_cross_reference") -# Annotation Property: (has_exact_synonym) +# Annotation Property: (has exact synonym) +AnnotationAssertion( "An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.") +AnnotationAssertion( ) +AnnotationAssertion( "https://github.com/information-artifact-ontology/ontology-metadata/issues/20") +AnnotationAssertion(rdfs:label "has exact synonym"@en) AnnotationAssertion(rdfs:label "has_exact_synonym") +AnnotationAssertion(rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/20") -# Annotation Property: (has_narrow_synonym) +# Annotation Property: (has narrow synonym) +AnnotationAssertion( "An alternative label for a class or property which has a more specific meaning than the preferred name/primary label.") +AnnotationAssertion( ) +AnnotationAssertion( "https://github.com/information-artifact-ontology/ontology-metadata/issues/19") +AnnotationAssertion(rdfs:label "has narrow synonym"@en) AnnotationAssertion(rdfs:label "has_narrow_synonym") +AnnotationAssertion(rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/19") # Annotation Property: (has_obo_format_version) @@ -12297,7 +12713,12 @@ AnnotationAssertion(rdfs:label (has_related_synonym) +AnnotationAssertion( "An alternative label for a class or property that has been used synonymously with the primary term name, but the usage is not strictly correct.") +AnnotationAssertion( ) +AnnotationAssertion( "https://github.com/information-artifact-ontology/ontology-metadata/issues/21") +AnnotationAssertion(rdfs:label "has related synonym"@en) AnnotationAssertion(rdfs:label "has_related_synonym") +AnnotationAssertion(rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/21") # Annotation Property: (has_scope) @@ -12365,6 +12786,7 @@ AnnotationAssertion(rdfs:label "par AnnotationAssertion(rdfs:label "part_of") AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion(rdfs:seeAlso ) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Part_of"^^xsd:anyURI) AnnotationAssertion(rdfs:seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -12454,6 +12876,7 @@ AnnotationAssertion(rdfs:comment "P AnnotationAssertion(rdfs:isDefinedBy ) AnnotationAssertion(rdfs:label "occurs in"@en) AnnotationAssertion(rdfs:label "occurs in") +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Occurs_in"^^xsd:anyURI) InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -12525,6 +12948,7 @@ TransitiveObjectProperty() AnnotationAssertion(Annotation( "BSPO:cjm") "x proximal to y iff x is closer to the point of attachment with the body than y.") AnnotationAssertion( "BSPO:0000100") +AnnotationAssertion( "NCIT:C25236") AnnotationAssertion( "spatial") AnnotationAssertion( "proximal_to") AnnotationAssertion( "proximal_to") @@ -12571,6 +12995,7 @@ TransitiveObjectProperty() AnnotationAssertion(Annotation( "BSPO:PATO_mtg_2009") "X in left side of Y <=> if Y is subdivided into two left and right portions, X is part of the left portion.") AnnotationAssertion( "BSPO:0000120") +AnnotationAssertion( "NCIT:C25229") AnnotationAssertion( "spatial") AnnotationAssertion( "in_left_side_of") AnnotationAssertion( "in_left_side_of") @@ -12583,6 +13008,7 @@ DisjointObjectProperties( "BSPO:PATO_mtg_2009") "X in right side of Y <=> if Y is subdivided into two left and right portions, X is part of the right portion.") AnnotationAssertion( "BSPO:0000121") +AnnotationAssertion( "NCIT:C25228") AnnotationAssertion( "spatial") AnnotationAssertion( "in_right_side_of") AnnotationAssertion( "in_right_side_of") @@ -13078,6 +13504,7 @@ AnnotationAssertion( ) AnnotationAssertion( "located_in") AnnotationAssertion(rdfs:label "located in"@en) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Located_in"^^xsd:anyURI) TransitiveObjectProperty() ObjectPropertyDomain(Annotation( "This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.") ) ObjectPropertyDomain( ObjectIntersectionOf( ObjectComplementOf())) @@ -13127,8 +13554,8 @@ AnnotationAssertion( "innervated_by") AnnotationAssertion(rdfs:label "innervated_by"@en) InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) +ObjectPropertyDomain( ) +ObjectPropertyRange( ) # Object Property: (has synaptic terminal of) @@ -13167,7 +13594,7 @@ ObjectPropertyRange( (has regulatory component activity) AnnotationAssertion( "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.") -AnnotationAssertion( "dos") +AnnotationAssertion( ) AnnotationAssertion( "2017-05-24T09:30:46Z"^^xsd:dateTime) AnnotationAssertion( "RO:0002013") AnnotationAssertion( "external") @@ -13180,7 +13607,7 @@ SubObjectPropertyOf( (has negative regulatory component activity) AnnotationAssertion( "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.") -AnnotationAssertion( "dos") +AnnotationAssertion( ) AnnotationAssertion( "2017-05-24T09:31:01Z"^^xsd:dateTime) AnnotationAssertion( "RO:0002014") AnnotationAssertion( "external") @@ -13194,7 +13621,7 @@ SubObjectPropertyOf( (has positive regulatory component activity) AnnotationAssertion( "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.") -AnnotationAssertion( "dos") +AnnotationAssertion( ) AnnotationAssertion( "2017-05-24T09:31:17Z"^^xsd:dateTime) AnnotationAssertion( "RO:0002015") AnnotationAssertion( "has_positive_regulatory_component_activity") @@ -13205,7 +13632,7 @@ SubObjectPropertyOf( (has component activity) -AnnotationAssertion( "dos") +AnnotationAssertion( ) AnnotationAssertion( "2017-05-24T09:44:33Z"^^xsd:dateTime) AnnotationAssertion( "RO:0002017") AnnotationAssertion( "has_component_activity") @@ -13216,7 +13643,7 @@ SubObjectPropertyOf( (has component process) AnnotationAssertion( "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.") -AnnotationAssertion( "dos") +AnnotationAssertion( ) AnnotationAssertion( "2017-05-24T09:49:21Z"^^xsd:dateTime) AnnotationAssertion( "RO:0002018") AnnotationAssertion( "has_component_process") @@ -13228,7 +13655,7 @@ ObjectPropertyRange( (occurs across) AnnotationAssertion( "A relationship between a process and a barrier, where the process occurs in a region spanning the barrier. For cellular processes the barrier is typically a membrane. Examples include transport across a membrane and membrane depolarization.") -AnnotationAssertion( "dos") +AnnotationAssertion( ) AnnotationAssertion( "2017-07-20T17:19:37Z"^^xsd:dateTime) AnnotationAssertion( "RO:0002021") AnnotationAssertion( "occurs_across") @@ -13237,19 +13664,19 @@ SubObjectPropertyOf( (directly regulated by) -AnnotationAssertion( "dos") +AnnotationAssertion( ) AnnotationAssertion( "2017-09-17T13:52:24Z"^^xsd:dateTime) AnnotationAssertion( "RO:0002022") AnnotationAssertion( "directly_regulated_by") -AnnotationAssertion(Annotation( "GOC:dos") rdfs:comment "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.") +AnnotationAssertion(Annotation( ) rdfs:comment "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.") AnnotationAssertion(rdfs:label "directly regulated by") SubObjectPropertyOf( ) InverseObjectProperties( ) # Object Property: (directly negatively regulated by) -AnnotationAssertion(Annotation( "GOC:dos") "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.") -AnnotationAssertion( "dos") +AnnotationAssertion(Annotation( ) "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.") +AnnotationAssertion( ) AnnotationAssertion( "2017-09-17T13:52:38Z"^^xsd:dateTime) AnnotationAssertion( "RO:0002023") AnnotationAssertion( "directly_negatively_regulated_by") @@ -13259,8 +13686,8 @@ InverseObjectProperties( (directly positively regulated by) -AnnotationAssertion(Annotation( "GOC:dos") "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.") -AnnotationAssertion( "dos") +AnnotationAssertion(Annotation( ) "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.") +AnnotationAssertion( ) AnnotationAssertion( "2017-09-17T13:52:47Z"^^xsd:dateTime) AnnotationAssertion( "RO:0002024") AnnotationAssertion( "directly_positively_regulated_by") @@ -13270,8 +13697,8 @@ InverseObjectProperties( (has effector activity) -AnnotationAssertion(Annotation( "GOC:dos") "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.") -AnnotationAssertion( "dos") +AnnotationAssertion(Annotation( ) "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.") +AnnotationAssertion( ) AnnotationAssertion( "2017-09-22T14:14:36Z"^^xsd:dateTime) AnnotationAssertion( "RO:0002025") AnnotationAssertion( "has_effector_activity") @@ -13293,6 +13720,7 @@ SubObjectPropertyOf( (simultaneous with) +AnnotationAssertion( "x simultaneous with y iff ω(x) = ω(y) and ω(α ) = ω(α), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point and '=' indicates the same instance in time.") AnnotationAssertion( ) AnnotationAssertion( "David Osumi-Sutherland") AnnotationAssertion( "RO:0002082") @@ -13301,6 +13729,7 @@ AnnotationAssertion( "t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)"@en) AnnotationAssertion(rdfs:label "simultaneous with"@en) SubObjectPropertyOf( ) +SymmetricObjectProperty() TransitiveObjectProperty() # Object Property: (ends after) @@ -13348,7 +13777,7 @@ SubObjectPropertyOf( (has soma location) AnnotationAssertion( ) -AnnotationAssertion( "Relation between a neuron and an anatomical structure that its soma is part of."@en) +AnnotationAssertion( "Relation between a neuron and a material anatomical entity that its soma is part of."@en) AnnotationAssertion( ) AnnotationAssertion( " some ( and some ?Y)") @@ -13358,7 +13787,7 @@ AnnotationAssertion( "has soma location"@en) SubObjectPropertyOf( ) ObjectPropertyDomain( ) -ObjectPropertyRange( ) +ObjectPropertyRange( ) # Object Property: (synapsed by) @@ -13391,8 +13820,8 @@ AnnotationAssertion( "has_plasma_membrane_part") AnnotationAssertion(rdfs:label "has plasma membrane part"@en) SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) +ObjectPropertyDomain( ) +ObjectPropertyRange( ) # Object Property: (synapsed to) @@ -13466,7 +13895,7 @@ AnnotationAssertion( "RO:0002134") AnnotationAssertion( "innervates") AnnotationAssertion(rdfs:label "innervates"@en) -ObjectPropertyDomain( ) +ObjectPropertyDomain( ) # Object Property: (continuous with) @@ -13564,7 +13993,6 @@ AnnotationAssertion(rdfs:comment "Co AnnotationAssertion(rdfs:label "in taxon") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) -ObjectPropertyRange( ) # Object Property: (spatially disjoint from) @@ -13622,8 +14050,8 @@ AnnotationAssertion( "attached to part of"@en) SubObjectPropertyOf( ) SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) +ObjectPropertyDomain( ) +ObjectPropertyRange( ) # Object Property: (supplies) @@ -13709,7 +14137,7 @@ SubObjectPropertyOf( ) ObjectPropertyDomain( ) ObjectPropertyDomain( ObjectUnionOf( )) -ObjectPropertyRange( ) +ObjectPropertyRange( ) # Object Property: (directly develops from) @@ -13726,8 +14154,8 @@ AnnotationAssertion(rdfs:comment "TO AnnotationAssertion(rdfs:label "directly develops from"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) -ObjectPropertyDomain( ObjectUnionOf( )) -ObjectPropertyRange( ObjectUnionOf( )) +ObjectPropertyDomain( ObjectUnionOf( )) +ObjectPropertyRange( ObjectUnionOf( )) # Object Property: (directly develops into) @@ -13965,7 +14393,7 @@ AnnotationAssertion( "develops_in") AnnotationAssertion(rdfs:label "develops in"@en) SubObjectPropertyOf( ) -ObjectPropertyDomain( ) +ObjectPropertyDomain( ) # Object Property: (ends) @@ -14049,6 +14477,7 @@ AnnotationAssertion( "has_input") AnnotationAssertion(rdfs:label "has input"@en) AnnotationAssertion(rdfs:label "has input") +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Has_input"^^xsd:anyURI) SubObjectPropertyOf( ) InverseObjectProperties( ) ObjectPropertyDomain( ) @@ -14069,9 +14498,33 @@ AnnotationAssertion( "has_output") AnnotationAssertion(rdfs:label "has output"@en) AnnotationAssertion(rdfs:label "has output") +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Has_output"^^xsd:anyURI) SubObjectPropertyOf( ) InverseObjectProperties( ) +# Object Property: (connecting branch of) + +AnnotationAssertion( "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is connecting branch of S, and B1-1 as a connecting branch of B1.") +AnnotationAssertion( "b connecting-branch-of s iff b is connected to s, and there exists some tree-like structure t such that the mereological sum of b plus s is either the same as t or a branching-part-of t.") +AnnotationAssertion( ) +AnnotationAssertion( "RO:0002252") +AnnotationAssertion( "connecting_branch_of") +AnnotationAssertion(rdfs:label "connecting branch of") +AnnotationAssertion(rdfs:seeAlso ) +SubObjectPropertyOf( ) +SubObjectPropertyOf( ) +InverseObjectProperties( ) + +# Object Property: (has connecting branch) + +AnnotationAssertion( "inverse of connecting branch of") +AnnotationAssertion( ) +AnnotationAssertion( "RO:0002253") +AnnotationAssertion( ) +AnnotationAssertion( "has_connecting_branch") +AnnotationAssertion(rdfs:label "has connecting branch") +SubObjectPropertyOf( ) + # Object Property: (has developmental contribution from) AnnotationAssertion( "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]") @@ -14083,8 +14536,8 @@ AnnotationAssertion( "has developmental contribution from"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) +ObjectPropertyDomain( ) +ObjectPropertyRange( ) # Object Property: (developmentally contributes to) @@ -14115,8 +14568,8 @@ AnnotationAssertion( "developmentally induced by"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) +ObjectPropertyDomain( ) +ObjectPropertyRange( ) # Object Property: (developmentally induces) @@ -14165,7 +14618,7 @@ AnnotationAssertion( ) AnnotationAssertion( "acts_upstream_of_or_within") AnnotationAssertion(rdfs:label "acts upstream of or within") -AnnotationAssertion(rdfs:seeAlso ) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within"^^xsd:anyURI) SubObjectPropertyOf( ) # Object Property: (developmentally replaces) @@ -14203,7 +14656,7 @@ SubObjectPropertyOf( (expresses) AnnotationAssertion( ) -AnnotationAssertion( "Inverse of 'expressed in'") +AnnotationAssertion( "y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process.") AnnotationAssertion( ) AnnotationAssertion( "RO:0002292") AnnotationAssertion( "expresses") @@ -14225,7 +14678,7 @@ AnnotationAssertion(rdfs:label "resu AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) ObjectPropertyDomain( ) -ObjectPropertyRange( ) +ObjectPropertyRange( ) # Object Property: (results in development of) @@ -14319,6 +14772,7 @@ AnnotationAssertion( "causally_upstream_of,_positive_effect") AnnotationAssertion(rdfs:comment "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y") AnnotationAssertion(rdfs:label "causally upstream of, positive effect") +AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -14334,6 +14788,7 @@ AnnotationAssertion( ) AnnotationAssertion( "causally_upstream_of,_negative_effect") AnnotationAssertion(rdfs:label "causally upstream of, negative effect") +AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -14368,7 +14823,7 @@ AnnotationAssertion(rdfs:label "resu AnnotationAssertion(rdfs:label "results in acquisition of features of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) -ObjectPropertyRange( ) +ObjectPropertyRange( ) # Object Property: (evolutionarily related to) @@ -14435,6 +14890,7 @@ AnnotationAssertion( ) AnnotationAssertion( "enables") AnnotationAssertion(rdfs:label "enables"@en) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Enables"^^xsd:anyURI) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -14477,7 +14933,7 @@ AnnotationAssertion( "RO:0002331") AnnotationAssertion( "involved_in") AnnotationAssertion(rdfs:label "involved in"@en) -AnnotationAssertion(rdfs:seeAlso ) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Involved_in"^^xsd:anyURI) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -14506,6 +14962,7 @@ AnnotationAssertion( ) AnnotationAssertion( "enabled_by") AnnotationAssertion(rdfs:label "enabled by"@en) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Enabled_by"^^xsd:anyURI) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -14728,7 +15185,7 @@ AnnotationAssertion(rdfs:label "has AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) SubObjectPropertyOf( ) -ObjectPropertyDomain(Annotation(rdfs:comment "We need to import uberon muscle to create a stricter domain constraint") ) +ObjectPropertyDomain(Annotation(rdfs:comment "We need to import uberon muscle to create a stricter domain constraint") ) # Object Property: (has muscle insertion) @@ -14741,7 +15198,7 @@ AnnotationAssertion(rdfs:label "has AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) SubObjectPropertyOf( ) -ObjectPropertyDomain(Annotation( "We need to import uberon muscle into RO to use as a stricter domain constraint") ) +ObjectPropertyDomain(Annotation( "We need to import uberon muscle into RO to use as a stricter domain constraint") ) # Object Property: (derived from ancestral fusion of) @@ -14832,8 +15289,8 @@ AnnotationAssertion( "has_developmental_potential_involving") AnnotationAssertion(rdfs:label "has developmental potential involving"@en) SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) +ObjectPropertyDomain( ) +ObjectPropertyRange( ) # Object Property: (has potential to developmentally contribute to) @@ -14913,6 +15370,7 @@ AnnotationAssertion( "RO:0002407") AnnotationAssertion( "indirectly_positively_regulates") AnnotationAssertion(rdfs:label "indirectly positively regulates"@en) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Indirectly_positively_regulates"^^xsd:anyURI) SubObjectPropertyOf( ) SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -14926,6 +15384,7 @@ AnnotationAssertion( "RO:0002409") AnnotationAssertion( "indirectly_negatively_regulates") AnnotationAssertion(rdfs:label "indirectly negatively regulates"@en) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Indirectly_negatively_regulates"^^xsd:anyURI) SubObjectPropertyOf( ) SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -15060,7 +15519,7 @@ SubObjectPropertyOf( (is active in) AnnotationAssertion( "A protein that enables activity in a cytosol.") -AnnotationAssertion(Annotation( "GOC:cjm") Annotation( "GOC:dos") "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.") +AnnotationAssertion(Annotation( ) Annotation( ) "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.") AnnotationAssertion( ) AnnotationAssertion( "executes activity in") AnnotationAssertion( "RO:0002432") @@ -15068,6 +15527,7 @@ AnnotationAssertion( "is_active_in") AnnotationAssertion(rdfs:comment "") AnnotationAssertion(rdfs:label "is active in") +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Is_active_in"^^xsd:anyURI) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15431,8 +15891,8 @@ SubObjectPropertyOf( ) AsymmetricObjectProperty() IrreflexiveObjectProperty() -ObjectPropertyDomain( ) -ObjectPropertyRange(Annotation( "This should be to a more restricted class, but not the Uberon class may be too restricted since it is a composition-based definition of skeleton rather than functional.") ) +ObjectPropertyDomain( ) +ObjectPropertyRange(Annotation( "This should be to a more restricted class, but not the Uberon class may be too restricted since it is a composition-based definition of skeleton rather than functional.") ) # Object Property: (causally influenced by) @@ -15501,8 +15961,8 @@ AnnotationAssertion( "biomechanically_related_to") AnnotationAssertion(rdfs:label "biomechanically related to") SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) +ObjectPropertyDomain( ) +ObjectPropertyRange( ) # Object Property: (has muscle antagonist) @@ -15545,7 +16005,7 @@ ObjectPropertyRange( "x lumen_of y iff x is the space or substance that is part of y and does not cross any of the inner membranes or boundaries of y that is maximal with respect to the volume of the convex hull.") AnnotationAssertion( ) -AnnotationAssertion( "GOC:cjm") +AnnotationAssertion( ) AnnotationAssertion( "RO:0002571") AnnotationAssertion( ) AnnotationAssertion( "lumen_of") @@ -15573,8 +16033,8 @@ AnnotationAssertion( "skeleton_of") AnnotationAssertion(rdfs:label "skeleton of") SubObjectPropertyOf( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ) +ObjectPropertyDomain( ) +ObjectPropertyRange( ) # Object Property: (directly regulates) @@ -15700,6 +16160,14 @@ AnnotationAssertion( "process has causal agent") SubObjectPropertyOf( ) +# Object Property: (correlated with) + +AnnotationAssertion( "A relationship that holds between two entities, where the entities exhibit a statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes.") +AnnotationAssertion( "Groups both positive and negative correlation") +AnnotationAssertion( "RO:0002610") +AnnotationAssertion( "correlated_with") +AnnotationAssertion(rdfs:label "correlated with") + # Object Property: (directly positively regulates) AnnotationAssertion( "p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q.") @@ -15714,6 +16182,7 @@ AnnotationAssertion( ) AnnotationAssertion( "directly_positively_regulates") AnnotationAssertion(rdfs:label "directly positively regulates") +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Directly_positively_regulates"^^xsd:anyURI) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15731,6 +16200,7 @@ AnnotationAssertion( ) AnnotationAssertion( "directly_negatively_regulates") AnnotationAssertion(rdfs:label "directly negatively regulates") +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Directly_negatively_regulates"^^xsd:anyURI) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15781,7 +16251,7 @@ SubObjectPropertyOf( (has primary output) -AnnotationAssertion(Annotation( "GOC:cjm") Annotation( "GOC:dph") Annotation( "GOC:kva") Annotation( "GOC:pt") Annotation(rdfs:comment "PMID:27812932") "p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c.") +AnnotationAssertion(Annotation( ) Annotation( "GOC:dph") Annotation( "GOC:kva") Annotation( "GOC:pt") Annotation(rdfs:comment "PMID:27812932") "p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c.") AnnotationAssertion( ) AnnotationAssertion( "2018-12-13T11:26:32Z"^^xsd:dateTime) AnnotationAssertion( "RO:0004008") @@ -15795,7 +16265,7 @@ SubObjectPropertyOf( (has primary input) -AnnotationAssertion(Annotation( "GOC:cjm") Annotation( "GOC:dph") Annotation( "GOC:kva") Annotation( "GOC:pt") Annotation(rdfs:comment "PMID:27812932") "p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c.") +AnnotationAssertion(Annotation( ) Annotation( "GOC:dph") Annotation( "GOC:kva") Annotation( "GOC:pt") Annotation(rdfs:comment "PMID:27812932") "p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c.") AnnotationAssertion( ) AnnotationAssertion( "2018-12-13T11:26:56Z"^^xsd:dateTime) AnnotationAssertion( "RO:0004009") @@ -15826,7 +16296,7 @@ AnnotationAssertion( ) AnnotationAssertion( "acts_upstream_of_or_within,_positive_effect") AnnotationAssertion(rdfs:label "acts upstream of or within, positive effect") -AnnotationAssertion(rdfs:seeAlso ) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within,_positive_effect"^^xsd:anyURI) SubObjectPropertyOf( ) # Object Property: (acts upstream of or within, negative effect) @@ -15838,6 +16308,7 @@ AnnotationAssertion( ) AnnotationAssertion( "acts_upstream_of_or_within,_negative_effect") AnnotationAssertion(rdfs:label "acts upstream of or within, negative effect") +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within,_negative_effect"^^xsd:anyURI) SubObjectPropertyOf( ) # Object Property: (acts upstream of, positive effect) @@ -15850,7 +16321,7 @@ AnnotationAssertion( ) AnnotationAssertion( "acts_upstream_of,_positive_effect") AnnotationAssertion(rdfs:label "acts upstream of, positive effect") -AnnotationAssertion(rdfs:seeAlso ) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of,_positive_effect"^^xsd:anyURI) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15864,7 +16335,7 @@ AnnotationAssertion( ) AnnotationAssertion( "acts_upstream_of,_negative_effect") AnnotationAssertion(rdfs:label "acts upstream of, negative effect") -AnnotationAssertion(rdfs:seeAlso ) +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of,_negative_effect"^^xsd:anyURI) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15876,6 +16347,7 @@ AnnotationAssertion( AnnotationAssertion( "RO:0004046") AnnotationAssertion( "causally_upstream_of_or_within,_negative_effect") AnnotationAssertion(rdfs:label "causally upstream of or within, negative effect") +AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Causally_upstream_of_or_within,_negative_effect"^^xsd:anyURI) SubObjectPropertyOf( ) # Object Property: (causally upstream of or within, positive effect) @@ -15886,6 +16358,7 @@ AnnotationAssertion( AnnotationAssertion( "RO:0004047") AnnotationAssertion( "causally_upstream_of_or_within,_positive_effect") AnnotationAssertion(rdfs:label "causally upstream of or within, positive effect") +AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) # Object Property: (regulates activity of) @@ -15902,7 +16375,7 @@ ObjectPropertyRange( (acts on population of) AnnotationAssertion( "p acts on population of c iff c' is a collection, has members of type c, and p has participant c") -AnnotationAssertion( "pg") +AnnotationAssertion( ) AnnotationAssertion( "2020-06-08T17:21:33Z"^^xsd:dateTime) AnnotationAssertion( "RO:0012003") AnnotationAssertion( "external") @@ -15917,7 +16390,7 @@ SubObjectPropertyOf( (results in fusion of) -AnnotationAssertion( "pg") +AnnotationAssertion( ) AnnotationAssertion( "2021-02-26T07:28:29Z"^^xsd:dateTime) AnnotationAssertion( "RO:0012008") AnnotationAssertion( "external") @@ -15933,7 +16406,7 @@ SubObjectPropertyOf( (indirectly causally upstream of) AnnotationAssertion( "p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q.") -AnnotationAssertion( "pg") +AnnotationAssertion( ) AnnotationAssertion( "2022-09-26T06:07:17Z"^^xsd:dateTime) AnnotationAssertion( "RO:0012011") AnnotationAssertion( "indirectly_causally_upstream_of") @@ -15943,7 +16416,7 @@ SubObjectPropertyOf( (indirectly regulates) AnnotationAssertion( "p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.") -AnnotationAssertion( "pg") +AnnotationAssertion( ) AnnotationAssertion( "2022-09-26T06:08:01Z"^^xsd:dateTime) AnnotationAssertion( "RO:0012012") AnnotationAssertion( "indirectly_regulates") @@ -15954,7 +16427,7 @@ SubObjectPropertyOf( (has synaptic IO in region) AnnotationAssertion( "A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses in that region.") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "2020-07-17T09:26:52Z"^^xsd:dateTime) AnnotationAssertion( "RO:0013001") AnnotationAssertion( "has synaptic input or output in") @@ -15994,8 +16467,8 @@ AnnotationAssertion(rdfs:label "has AnnotationAssertion( "'Ly-76 high positive erythrocyte' equivalent to 'enucleate erythrocyte' and (has_high_plasma_membrane_amount some 'lymphocyte antigen 76 (mouse)')") AnnotationAssertion(Annotation( "PMID:19243617") "A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface.") -AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "RO:0015015") AnnotationAssertion( "has_high_plasma_membrane_amount") AnnotationAssertion(rdfs:label "has high plasma membrane amount") @@ -16006,8 +16479,8 @@ ObjectPropertyDomain( "'DN2b thymocyte' equivalent to 'DN2 thymocyte' and (has_low_plasma_membrane_amount some 'mast/stem cell growth factor receptor')") AnnotationAssertion(Annotation( "PMID:19243617") "A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface.") -AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "RO:0015016") AnnotationAssertion( "has_low_plasma_membrane_amount") AnnotationAssertion(rdfs:label "has low plasma membrane amount") @@ -16028,6 +16501,18 @@ AnnotationAssertion( "device_utilizes_material") AnnotationAssertion(rdfs:label "device utilizes material"@en) +# Object Property: (positively correlated with) + +AnnotationAssertion( "A relation between entities in which one increases or decreases as the other does the same."@en) +AnnotationAssertion( "directly correlated with"@en) +AnnotationAssertion( ) +AnnotationAssertion( "RO:0017003") +AnnotationAssertion( "positively_correlated_with") +AnnotationAssertion(rdfs:label "positively correlated with"@en) +SubObjectPropertyOf( ) +SymmetricObjectProperty() +ReflexiveObjectProperty() + # Object Property: (regulates characteristic) AnnotationAssertion( "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.") @@ -16159,13 +16644,13 @@ AnnotationAssertion( "an organism"@en) AnnotationAssertion( "the bottom right portion of a human torso"@en) AnnotationAssertion( "the interior of your mouth"@en) -AnnotationAssertion( "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything."@en) AnnotationAssertion(Annotation( ) "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en) AnnotationAssertion(Annotation( ) "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])"@en) AnnotationAssertion(Annotation( ) "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])"@en) AnnotationAssertion(Annotation( ) "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] ") AnnotationAssertion(Annotation( ) "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] ") AnnotationAssertion(Annotation( ) "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] ") +AnnotationAssertion(rdfs:comment "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything."@en) AnnotationAssertion(rdfs:isDefinedBy ) AnnotationAssertion(rdfs:label "independent continuant"@en) SubClassOf( ) @@ -16198,10 +16683,10 @@ AnnotationAssertion( "the flight of a bird"@en) AnnotationAssertion( "the life of an organism"@en) AnnotationAssertion( "your process of aging."@en) -AnnotationAssertion( "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t."@en) AnnotationAssertion(Annotation( ) "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"@en) AnnotationAssertion( "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)"@en) AnnotationAssertion(Annotation( ) "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] ") +AnnotationAssertion(rdfs:comment "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t."@en) AnnotationAssertion(rdfs:isDefinedBy ) AnnotationAssertion(rdfs:label "process"@en) SubClassOf( ) @@ -16278,10 +16763,10 @@ AnnotationAssertion( "the role of being a doctor"@en) AnnotationAssertion( "the shape of this hole."@en) AnnotationAssertion( "the smell of this portion of mozzarella"@en) -AnnotationAssertion( "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same."@en) AnnotationAssertion(Annotation( ) "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])"@en) AnnotationAssertion(Annotation( ) Annotation(rdfs:comment "per discussion with Barry Smith") "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc."@en) AnnotationAssertion(Annotation( ) "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] ") +AnnotationAssertion(rdfs:comment "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same."@en) AnnotationAssertion(rdfs:isDefinedBy ) AnnotationAssertion(rdfs:label "specifically dependent continuant"@en) SubClassOf( ) @@ -16315,9 +16800,9 @@ AnnotationAssertion( "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity."@en) AnnotationAssertion( "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop"@en) AnnotationAssertion( "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule."@en) -AnnotationAssertion( "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time."@en) AnnotationAssertion(Annotation( ) "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en) AnnotationAssertion(Annotation( ) "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] ") +AnnotationAssertion(rdfs:comment "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time."@en) AnnotationAssertion(rdfs:isDefinedBy ) AnnotationAssertion(rdfs:label "generically dependent continuant"@en) SubClassOf( ) @@ -16381,22 +16866,17 @@ DisjointClasses( ObjectSomeValuesFro # Class: (anatomical entity) -AnnotationAssertion(Annotation( "CAROC:Brownsville2014") "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.") AnnotationAssertion(Annotation( "CARO:MAH") "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.") AnnotationAssertion( "spatial") AnnotationAssertion( "CARO:0000000") -AnnotationAssertion(rdfs:comment "Following BFO, material anatomical entities may have immaterial parts (the lumen of your stomach is part of your stomach). The granularity limit follows the limits set by the Gene Ontology on the granularity limit for GO:cellular_component. Note that substances produced by an organism (sweat, feaces, urine) do not need to be part of an organism to qualify as an anatomical structure.") AnnotationAssertion(rdfs:label "anatomical entity") -SubClassOf( ) -# Class: (connected anatomical structure) +# Class: (anatomical structure) AnnotationAssertion(Annotation( "CC:DOS") "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome.") AnnotationAssertion( "spatial") AnnotationAssertion( "CARO:0000003") -AnnotationAssertion(rdfs:comment "Note that the definition does not say 'generated exclusively by the co-ordinated expression of the organism's own genome', so this is still valid for cases where normal morphogenesis requires the actions of a facultative symbiont, or some looser dependency such as the a requirement for the presence of gut flora for normal gut development.") AnnotationAssertion(rdfs:label "anatomical structure") -AnnotationAssertion(rdfs:label "connected anatomical structure") SubClassOf( ) # Class: (material anatomical entity) @@ -16407,28 +16887,6 @@ AnnotationAssertion( "material anatomical entity") SubClassOf( ) -# Class: (neuron projection bundle) - -AnnotationAssertion( "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses.") -AnnotationAssertion( "CARO:0001001") -AnnotationAssertion(rdfs:label "neuron projection bundle") -SubClassOf( ) - -# Class: (organism or virus or viroid) - -AnnotationAssertion( "Material anatomical entity that is a member of an individual species or is a viral or viroid particle.") -AnnotationAssertion( "Melissa Haendel") -AnnotationAssertion(rdfs:label "organism or virus or viroid") -SubClassOf( ) - -# Class: (multicellular anatomical structure) - -AnnotationAssertion( "An anatomical structure that has more than one cell as a part.") -AnnotationAssertion( "djs93") -AnnotationAssertion( "CARO:0010000") -AnnotationAssertion(rdfs:label "multicellular anatomical structure") -SubClassOf( ) - # Class: (electron) AnnotationAssertion( "Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV.") @@ -16714,6 +17172,23 @@ AnnotationAssertion(rdfs:label "24 SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (purines D-ribonucleoside) + +AnnotationAssertion( "A purine ribonucleoside that is a purine derivative attached to a beta-D-ribofuranosyl residue at position 9 via a glycosidic (N-glycosyl) linkage.") +AnnotationAssertion( "0") +AnnotationAssertion( "C10H11N4O4R2") +AnnotationAssertion( "251.219") +AnnotationAssertion( "251.07803") +AnnotationAssertion( "C1(=*)NC(=NC2=C1N=CN2[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)*") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a purine D-ribonucleoside") +AnnotationAssertion( "CHEBI:142355") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purines D-ribonucleoside") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (glutamate(1-)) AnnotationAssertion( "An alpha-amino-acid anion that is the conjugate base of glutamic acid, having anionic carboxy groups and a cationic amino group") @@ -17028,6 +17503,34 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (hydron) + +AnnotationAssertion( "The general name for the hydrogen nucleus, to be used without regard to the hydrogen nuclear mass (either for hydrogen in its natural abundance or where it is not desired to distinguish between the isotopes).") +AnnotationAssertion( "+1") +AnnotationAssertion( "H") +AnnotationAssertion( "InChI=1S/p+1") +AnnotationAssertion( "GPRLSGONYQIRFK-UHFFFAOYSA-N") +AnnotationAssertion( "1.00794") +AnnotationAssertion( "1.008") +AnnotationAssertion( "[H+]") +AnnotationAssertion( "CHEBI:10744") +AnnotationAssertion( "CHEBI:13357") +AnnotationAssertion( "CHEBI:5584") +AnnotationAssertion( "KEGG:C00080") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Hydron") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydrogen(1+)") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "hydron") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "H(+)") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "H+") +AnnotationAssertion( "CHEBI:15378") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydron") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + # Class: (dioxygen) AnnotationAssertion( "0") @@ -17092,6 +17595,54 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ATP) + +AnnotationAssertion( "An adenosine 5'-phosphate in which the 5'-phosphate is a triphosphate group. It is involved in the transportation of chemical energy during metabolic pathways.") +AnnotationAssertion( "0") +AnnotationAssertion( "C10H16N5O13P3") +AnnotationAssertion( "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1") +AnnotationAssertion( "ZKHQWZAMYRWXGA-KQYNXXCUSA-N") +AnnotationAssertion( "507.18100") +AnnotationAssertion( "506.99575") +AnnotationAssertion( "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O") +AnnotationAssertion( "CHEBI:10789") +AnnotationAssertion( "CHEBI:10841") +AnnotationAssertion( "CHEBI:13236") +AnnotationAssertion( "CHEBI:22249") +AnnotationAssertion( "CHEBI:2359") +AnnotationAssertion( "CHEBI:40938") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:73010") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:56-65-5") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:56-65-5") +AnnotationAssertion( "DrugBank:DB00171") +AnnotationAssertion(Annotation( "DrugCentral") "Drug_Central:91") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:34857") +AnnotationAssertion( "HMDB:HMDB0000538") +AnnotationAssertion( "KEGG:C00002") +AnnotationAssertion( "KEGG:D08646") +AnnotationAssertion( "KNApSAcK:C00001491") +AnnotationAssertion( "PDBeChem:ATP") +AnnotationAssertion( "Patent:US3079379") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:73010") +AnnotationAssertion( "Wikipedia:Adenosine_triphosphate") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "ATP") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "adenosine 5'-(tetrahydrogen triphosphate)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "PDBeChem") "ADENOSINE-5'-TRIPHOSPHATE") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Adenosine 5'-triphosphate") +AnnotationAssertion(Annotation( "ChemIDplus") "Adenosine triphosphate") +AnnotationAssertion(Annotation( "IUPAC") "H4atp") +AnnotationAssertion( "CHEBI:15422") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ATP") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (squalene) AnnotationAssertion( "A triterpene consisting of 2,6,10,15,19,23-hexamethyltetracosane having six double bonds at the 2-, 6-, 10-, 14-, 18- and 22-positions with (all-E)-configuration.") @@ -17657,6 +18208,81 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (adenosine) + +AnnotationAssertion( "A ribonucleoside composed of a molecule of adenine attached to a ribofuranose moiety via a beta-N(9)-glycosidic bond.") +AnnotationAssertion( "0") +AnnotationAssertion( "C10H13N5O4") +AnnotationAssertion( "InChI=1S/C10H13N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,6-7,10,16-18H,1H2,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1") +AnnotationAssertion( "OIRDTQYFTABQOQ-KQYNXXCUSA-N") +AnnotationAssertion( "267.24152") +AnnotationAssertion( "267.09675") +AnnotationAssertion( "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O") +AnnotationAssertion( "CHEBI:13734") +AnnotationAssertion( "CHEBI:22237") +AnnotationAssertion( "CHEBI:2472") +AnnotationAssertion( "CHEBI:40558") +AnnotationAssertion( "CHEBI:40825") +AnnotationAssertion( "CHEBI:40906") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:93029") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:58-61-7") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:58-61-7") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:58-61-7") +AnnotationAssertion( "DrugBank:DB00640") +AnnotationAssertion(Annotation( "DrugCentral") "Drug_Central:90") +AnnotationAssertion( "ECMDB:ECMDB00050") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:53385") +AnnotationAssertion( "HMDB:HMDB0000050") +AnnotationAssertion( "KEGG:C00212") +AnnotationAssertion( "KEGG:D00045") +AnnotationAssertion( "KNApSAcK:C00007444") +AnnotationAssertion( "LINCS:LSM-28568") +AnnotationAssertion( "MetaCyc:ADENOSINE") +AnnotationAssertion( "PDBeChem:ADN") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11213237") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11820865") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11978011") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16183671") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16917093") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17190852") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18000974") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:323854") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:93029") +AnnotationAssertion( "Wikipedia:Adenosine") +AnnotationAssertion( "YMDB:YMDB00058") +AnnotationAssertion(Annotation( "PDBeChem") "ADENOSINE") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Adenosine") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "adenosine") +AnnotationAssertion(Annotation( "UniProt") "adenosine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "DrugBank") "(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol") +AnnotationAssertion(Annotation( "ChemIDplus") "6-Amino-9-beta-D-ribofuranosyl-9H-purine") +AnnotationAssertion(Annotation( "ChemIDplus") "9-beta-D-Ribofuranosidoadenine") +AnnotationAssertion(Annotation( "ChemIDplus") "9-beta-D-Ribofuranosyl-9H-purin-6-amine") +AnnotationAssertion(Annotation( "ChEBI") "9-beta-D-ribofuranosyl-9H-purin-6-amine") +AnnotationAssertion(Annotation( "CBN") "Ade-Rib") +AnnotationAssertion(Annotation( "DrugBank") "Adenine Deoxyribonucleoside") +AnnotationAssertion(Annotation( "DrugBank") Annotation( ) "Adenocard") +AnnotationAssertion(Annotation( "DrugBank") Annotation( ) "Adenocor") +AnnotationAssertion(Annotation( "DrugBank") Annotation( ) "Adenoscan") +AnnotationAssertion(Annotation( "ChEBI") "Adenosin") +AnnotationAssertion(Annotation( "DrugBank") "Adenyldeoxyriboside") +AnnotationAssertion(Annotation( "CBN") "Ado") +AnnotationAssertion(Annotation( "DrugBank") "Deoxyadenosine") +AnnotationAssertion(Annotation( "DrugBank") "Desoxyadenosine") +AnnotationAssertion(Annotation( "ChemIDplus") "beta-D-Adenosine") +AnnotationAssertion( "CHEBI:16335") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "adenosine") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (hyaluronic acid) AnnotationAssertion( "A mucopolysaccharide composed of N-acetylglucosamine and glucuronic acid subunits. It is found in the connective tissues of vertebrates. A principal constituent of the extracellular matrix (ECM), it mediates the growth and metastasis of tumour cells.") @@ -17869,6 +18495,84 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (nucleoside 5'-phosphate) + +AnnotationAssertion( "A ribosyl or deoxyribosyl derivative of a pyrimidine or purine base in which C-5 of the ribose ring is mono-, di-, tri- or tetra-phosphorylated.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H9O6PR2") +AnnotationAssertion( "196.09510") +AnnotationAssertion( "196.01367") +AnnotationAssertion( "O[C@H]1[C@@H]([*])[C@H]([*])O[C@@H]1COP(O)(O)=O") +AnnotationAssertion( "CHEBI:14674") +AnnotationAssertion( "CHEBI:25603") +AnnotationAssertion( "CHEBI:7650") +AnnotationAssertion( "KEGG:C01117") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nucleoside 5'-phosphate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nucleoside 5'-phosphates") +AnnotationAssertion( "CHEBI:16701") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside 5'-phosphate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (adenine) + +AnnotationAssertion( "The parent compound of the 6-aminopurines, composed of a purine having an amino group at C-6.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H5N5") +AnnotationAssertion( "InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10)") +AnnotationAssertion( "GFFGJBXGBJISGV-UHFFFAOYSA-N") +AnnotationAssertion( "135.12690") +AnnotationAssertion( "135.05450") +AnnotationAssertion( "Nc1ncnc2[nH]cnc12") +AnnotationAssertion( "CHEBI:13733") +AnnotationAssertion( "CHEBI:22236") +AnnotationAssertion( "CHEBI:2470") +AnnotationAssertion( "CHEBI:40579") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:608603") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:73-24-5") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:73-24-5") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:73-24-5") +AnnotationAssertion( "DrugBank:DB00173") +AnnotationAssertion(Annotation( "DrugCentral") "Drug_Central:89") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:3903") +AnnotationAssertion( "HMDB:HMDB0000034") +AnnotationAssertion( "KEGG:C00147") +AnnotationAssertion( "KEGG:D00034") +AnnotationAssertion( "KNApSAcK:C00001490") +AnnotationAssertion( "MetaCyc:ADENINE") +AnnotationAssertion( "PDBeChem:ADE") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:11985597") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:12829005") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:12951489") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15063338") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15715490") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17439666") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:8070089") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:608603") +AnnotationAssertion( "Wikipedia:Adenine") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "9H-purin-6-amine") +AnnotationAssertion(Annotation( "PDBeChem") "ADENINE") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Adenine") +AnnotationAssertion(Annotation( "UniProt") "adenine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "6-Aminopurine") +AnnotationAssertion(Annotation( "ChEBI") "A") +AnnotationAssertion(Annotation( "CBN") "Ade") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "Adenin") +AnnotationAssertion( "CHEBI:16708") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "adenine") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (mineral nutrient) AnnotationAssertion( "A mineral that is an inorganic nutrient which must be ingested and absorbed in adequate amounts to satisfy a wide range of essential metabolic and/or structural functions in the human body.") @@ -17918,6 +18622,50 @@ AnnotationAssertion( "glycan") SubClassOf( ) +# Class: (ADP) + +AnnotationAssertion( "A purine ribonucleoside 5'-diphosphate having adenine as the nucleobase.") +AnnotationAssertion( "0") +AnnotationAssertion( "C10H15N5O10P2") +AnnotationAssertion( "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1") +AnnotationAssertion( "XTWYTFMLZFPYCI-KQYNXXCUSA-N") +AnnotationAssertion( "427.20110") +AnnotationAssertion( "427.02942") +AnnotationAssertion( "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O") +AnnotationAssertion( "CHEBI:13222") +AnnotationAssertion( "CHEBI:22244") +AnnotationAssertion( "CHEBI:2342") +AnnotationAssertion( "CHEBI:40553") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:67722") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:20398-34-9") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:58-64-0") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:58-64-0") +AnnotationAssertion( "COMe:MOL000173") +AnnotationAssertion( "DrugBank:DB03431") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:88452") +AnnotationAssertion( "KEGG:C00008") +AnnotationAssertion( "KEGG:G11113") +AnnotationAssertion( "KNApSAcK:C00019353") +AnnotationAssertion( "PDBeChem:ADP") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16295522") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:67722") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "ADP") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "adenosine 5'-(trihydrogen diphosphate)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "5'-adenylphosphoric acid") +AnnotationAssertion(Annotation( "PDBeChem") "ADENOSINE-5'-DIPHOSPHATE") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Adenosine 5'-diphosphate") +AnnotationAssertion(Annotation( "IUPAC") "H3adp") +AnnotationAssertion( "CHEBI:16761") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ADP") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (tryptamine) AnnotationAssertion( "An aminoalkylindole consisting of indole having a 2-aminoethyl group at the 3-position.") @@ -18022,6 +18770,31 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (nucleoside 5'-diphosphate) + +AnnotationAssertion( "0") +AnnotationAssertion( "C5H11O10P2R") +AnnotationAssertion( "293.08240") +AnnotationAssertion( "292.98274") +AnnotationAssertion( "O[C@H]1[C@H]([*])O[C@H](COP(O)(=O)OP(O)(O)=O)[C@H]1O") +AnnotationAssertion( "CHEBI:13401") +AnnotationAssertion( "CHEBI:13662") +AnnotationAssertion( "CHEBI:14675") +AnnotationAssertion( "CHEBI:25606") +AnnotationAssertion( "CHEBI:7428") +AnnotationAssertion( "CHEBI:7652") +AnnotationAssertion( "KEGG:C00454") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "NDP") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nucleoside diphosphate") +AnnotationAssertion(Annotation( "ChEBI") "nucleoside diphosphates") +AnnotationAssertion( "CHEBI:16862") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside 5'-diphosphate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (gamma-aminobutyric acid) AnnotationAssertion( "A gamma-amino acid that is butanoic acid with the amino substituent located at C-4.") @@ -18089,6 +18862,30 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (D-ribose) + +AnnotationAssertion( "A ribose in which the chiral carbon atom furthest away from the aldehyde group (C4') has the same configuration as in D-glyceraldehyde.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H10O5") +AnnotationAssertion( "150.12990") +AnnotationAssertion( "150.05282") +AnnotationAssertion( "CHEBI:13011") +AnnotationAssertion( "CHEBI:21078") +AnnotationAssertion( "DrugBank:DB01936") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24404872") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24752650") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "D-ribo-pentose") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "D-ribose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "JCBN") "D-Rib") +AnnotationAssertion( "CHEBI:16988") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "D-ribose") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (bilirubin IXalpha) AnnotationAssertion( "A member of the class of biladienes that is a linear tetrapyrrole with the dipyrrole units being of both exovinyl and endovinyl type. A product of heme degradation, it is produced in the reticuloendothelial system by the reduction of biliverdin and transported to the liver as a complex with serum albumin.") @@ -18346,6 +19143,35 @@ AnnotationAssertion(rdfs:label "glu SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (7H-purine) + +AnnotationAssertion( "The 7H-tautomer of purine.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H4N4") +AnnotationAssertion( "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)") +AnnotationAssertion( "KDCGOANMDULRCW-UHFFFAOYSA-N") +AnnotationAssertion( "120.11222") +AnnotationAssertion( "120.04360") +AnnotationAssertion( "c1ncc2[nH]cnc2n1") +AnnotationAssertion( "CHEBI:14968") +AnnotationAssertion( "CHEBI:8639") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3200") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:601779") +AnnotationAssertion( "HMDB:HMDB0001366") +AnnotationAssertion( "KEGG:C15587") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:3200") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "7H-purine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Purine") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Purine base") +AnnotationAssertion( "CHEBI:17258") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "7H-purine") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (ferroptosis inhibitor) AnnotationAssertion( "Any substance that inhibits the process of ferroptosis (a type of programmed cell death dependent on iron and characterized by the accumulation of lipid peroxides) in organisms.") @@ -18377,6 +19203,30 @@ AnnotationAssertion( "ferroptosis inducer") SubClassOf( ) +# Class: (nucleoside 5'-triphoshate) + +AnnotationAssertion( "0") +AnnotationAssertion( "C5H12O13P3R") +AnnotationAssertion( "373.063") +AnnotationAssertion( "372.94908") +AnnotationAssertion( "[C@H]1([C@H]([C@@H](O)[C@@H](O1)*)O)COP(OP(OP(=O)(O)O)(=O)O)(=O)O") +AnnotationAssertion( "CHEBI:13411") +AnnotationAssertion( "CHEBI:14677") +AnnotationAssertion( "CHEBI:25610") +AnnotationAssertion( "CHEBI:7442") +AnnotationAssertion( "CHEBI:7655") +AnnotationAssertion( "KEGG:C00201") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "NTP") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nucleoside triphosphate") +AnnotationAssertion(Annotation( "ChEBI") "nucleoside triphosphates") +AnnotationAssertion( "CHEBI:17326") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside 5'-triphoshate") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (testosterone) AnnotationAssertion( "An androstanoid having 17beta-hydroxy and 3-oxo groups, together with unsaturation at C-4-C-5..") @@ -18654,6 +19504,24 @@ AnnotationAssertion( "geroprotector") SubClassOf( ) +# Class: (ribonucleoside diphosphate) + +AnnotationAssertion( "0") +AnnotationAssertion( "C5H11O10P2R") +AnnotationAssertion( "293.083") +AnnotationAssertion( "292.98274") +AnnotationAssertion( "CHEBI:15046") +AnnotationAssertion( "CHEBI:26557") +AnnotationAssertion( "CHEBI:8845") +AnnotationAssertion( "KEGG:C03723") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Ribonucleoside diphosphate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside diphosphates") +AnnotationAssertion( "CHEBI:17668") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribonucleoside diphosphate") +SubClassOf( ) + # Class: (ceramide) AnnotationAssertion( "Ceramides (N-acyl-sphingoid bases) are a major subclass of sphingoid base derivatives with an amide-linked fatty acid. The fatty acids are typically saturated or monounsaturated with chain lengths from 14 to 26 carbon atoms; the presence of a hydroxyl group on carbon 2 is fairly common. Ceramides are generally precursors of more complex sphingolipids. In the illustrated generalised structure, R(1) = OH, OX (where X = acyl, glycosyl, phosphate, phosphonate, etc.), or H.") @@ -18742,6 +19610,24 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ribonucleoside triphosphate) + +AnnotationAssertion( "0") +AnnotationAssertion( "C5H12O13P3R") +AnnotationAssertion( "373.063") +AnnotationAssertion( "372.94908") +AnnotationAssertion( "CHEBI:15047") +AnnotationAssertion( "CHEBI:26559") +AnnotationAssertion( "CHEBI:8846") +AnnotationAssertion( "KEGG:C03802") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Ribonucleoside triphosphate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside triphosphates") +AnnotationAssertion( "CHEBI:17972") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribonucleoside triphosphate") +SubClassOf( ) + # Class: (lipid) AnnotationAssertion( "'Lipids' is a loosely defined term for substances of biological origin that are soluble in nonpolar solvents. They consist of saponifiable lipids, such as glycerides (fats and oils) and phospholipids, as well as nonsaponifiable lipids, principally steroids.") @@ -18966,6 +19852,32 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ribonucleoside) + +AnnotationAssertion( "Any nucleoside where the sugar component is D-ribose.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H9O4R") +AnnotationAssertion( "133.123") +AnnotationAssertion( "133.05008") +AnnotationAssertion( "OC[C@H]1O[C@@H]([*])[C@H](O)[C@@H]1O") +AnnotationAssertion( "CHEBI:13014") +AnnotationAssertion( "CHEBI:13015") +AnnotationAssertion( "CHEBI:13685") +AnnotationAssertion( "CHEBI:21085") +AnnotationAssertion( "CHEBI:26560") +AnnotationAssertion( "CHEBI:4240") +AnnotationAssertion( "CHEBI:8844") +AnnotationAssertion( "KEGG:C00911") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Ribonucleoside") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a ribonucleoside") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleosides") +AnnotationAssertion( "CHEBI:18254") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribonucleoside") +SubClassOf( ) +SubClassOf( ) + # Class: (nucleobase) AnnotationAssertion( "That part of DNA or RNA that may be involved in pairing.") @@ -19200,6 +20112,19 @@ AnnotationAssertion( "5beta-cholane") SubClassOf( ) +# Class: (6-aminopurines) + +AnnotationAssertion( "Any compound having 6-aminopurine (adenine) as part of its structure.") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:1646334") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18524423") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:7342604") +AnnotationAssertion(Annotation( "ChEBI") "6-aminopurines") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:20706") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "6-aminopurines") +SubClassOf( ) + # Class: (N-acylglucosamine) AnnotationAssertion(Annotation( "ChEBI") "N-acylglucosamine") @@ -19221,6 +20146,22 @@ AnnotationAssertion( "N-acyl-hexosamine") SubClassOf( ) +# Class: (N-glycosyl compound) + +AnnotationAssertion( "A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to a nitrogen atom, thus creating a C-N bond.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "glycosylamine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "N-glycoside") +AnnotationAssertion(Annotation( "ChEBI") "N-glycosides") +AnnotationAssertion(Annotation( "ChEBI") "N-glycosyl compounds") +AnnotationAssertion(Annotation( "IUPAC") "glycosylamines") +AnnotationAssertion( "CHEBI:21731") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "N-glycosyl compound") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + # Class: (acetamides) AnnotationAssertion( "Compounds with the general formula RNHC(=O)CH3.") @@ -19244,6 +20185,27 @@ AnnotationAssertion( "acyl group") SubClassOf( ) +# Class: (adenosine phosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "adenosine phosphates") +AnnotationAssertion( "CHEBI:22256") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "adenosine phosphate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (adenosines) + +AnnotationAssertion( "Any purine ribonucleoside that is a derivative of adenosine.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:22260") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "adenosines") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (alkaline earth metal atom) AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "alkaline earth metals") @@ -19308,6 +20270,16 @@ AnnotationAssertion(rdfs:label "ami SubClassOf( ) SubClassOf( ) +# Class: (aminopurine) + +AnnotationAssertion( "Any purine having at least one amino substituent.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "aminopurines") +AnnotationAssertion( "CHEBI:22527") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aminopurine") +SubClassOf( ) + # Class: (anion) AnnotationAssertion( "A monoatomic or polyatomic species having one or more elementary charges of the electron.") @@ -19597,6 +20569,17 @@ AnnotationAssertion( "diazole") SubClassOf( ) +# Class: (({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:237958") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (drug) AnnotationAssertion( "Any substance which when absorbed into a living organism may modify one or more of its functions. The term is generally accepted for a substance taken for a therapeutic purpose, but is also commonly used for abused substances.") @@ -20201,6 +21184,32 @@ AnnotationAssertion( "nonmetal atom") SubClassOf( ) +# Class: (nucleoside phosphate) + +AnnotationAssertion( "A nucleobase-containing molecular entity that is a nucleoside in which one or more of the sugar hydroxy groups has been converted into a mono- or poly-phosphate. The term includes both nucleotides and non-nucleotide nucleoside phosphates.") +AnnotationAssertion( "KEGG:C01329") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "NMP") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nucleoside monophosphate") +AnnotationAssertion(Annotation( "ChEBI") "nucleoside phosphates") +AnnotationAssertion( "CHEBI:25608") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside phosphate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organic heteromonocyclic compound) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic heteromonocyclic compounds") +AnnotationAssertion( "CHEBI:25693") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic heteromonocyclic compound") +SubClassOf( ) +SubClassOf( ) + # Class: (organic anion) AnnotationAssertion( "Any organic ion with a net negative charge.") @@ -20335,6 +21344,28 @@ AnnotationAssertion(rdfs:label "oxy SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (aldopentose phosphate) + +AnnotationAssertion(Annotation( "ChEBI") "aldopentose phosphate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "aldopentose phosphates") +AnnotationAssertion( "CHEBI:25900") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aldopentose phosphate") +SubClassOf( ) +SubClassOf( ) + +# Class: (pentose) + +AnnotationAssertion( "A five-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldopentose) or a ketone group at position 2 (ketopentose).") +AnnotationAssertion(Annotation( "ChEBI") "pentose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "pentoses") +AnnotationAssertion( "CHEBI:25901") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pentose") +SubClassOf( ) + # Class: (peptide hormone) AnnotationAssertion( "Any peptide with hormonal activity in animals, whether endocrine, neuroendocrine, or paracrine.") @@ -20477,6 +21508,127 @@ AnnotationAssertion(rdfs:label "por SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (purine nucleobase) + +AnnotationAssertion( "A nucleobase whose skeleton is derived from purine.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H3N4R2") +AnnotationAssertion( "119.104") +AnnotationAssertion( "119.03577") +AnnotationAssertion( "C1(NC(=NC=2NC=NC12)*)=*") +AnnotationAssertion( "KEGG:C15587") +AnnotationAssertion(Annotation( "ChEBI") "purine nucleobase") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a purine nucleobase") +AnnotationAssertion(Annotation( "ChEBI") "purine bases") +AnnotationAssertion(Annotation( "ChEBI") "purine nucleobases") +AnnotationAssertion( "CHEBI:26386") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine nucleobase") +SubClassOf( ) +SubClassOf( ) + +# Class: (purine nucleoside diphosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "purine nucleoside diphosphates") +AnnotationAssertion( "CHEBI:26391") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine nucleoside diphosphate") +SubClassOf( ) + +# Class: (purine nucleoside triphosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "purine nucleoside triphosphates") +AnnotationAssertion( "CHEBI:26393") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine nucleoside triphosphate") +SubClassOf( ) + +# Class: (purine nucleoside) + +AnnotationAssertion(Annotation( "ChEBI") "purine nucleoside") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "purine nucleosides") +AnnotationAssertion( "CHEBI:26394") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine nucleoside") +SubClassOf( ) +SubClassOf( ) + +# Class: (purine nucleotide) + +AnnotationAssertion( "Any nucleotide that has a purine nucleobase.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "purine nucleotides") +AnnotationAssertion( "CHEBI:26395") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine nucleotide") +SubClassOf( ) +SubClassOf( ) + +# Class: (purine ribonucleoside diphosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "purine ribonucleoside diphosphates") +AnnotationAssertion( "CHEBI:26396") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine ribonucleoside diphosphate") +SubClassOf( ) +SubClassOf( ) + +# Class: (purine ribonucleoside triphosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "purine ribonucleoside triphosphates") +AnnotationAssertion( "CHEBI:26398") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine ribonucleoside triphosphate") +SubClassOf( ) +SubClassOf( ) + +# Class: (purine ribonucleoside) + +AnnotationAssertion( "A ribonucleoside that has a purine moiety as the nucleobase (the R group in the illustration).") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H9O4R") +AnnotationAssertion( "133.123") +AnnotationAssertion( "133.05008") +AnnotationAssertion( "*[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "purine ribonucleosides") +AnnotationAssertion( "CHEBI:26399") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine ribonucleoside") +SubClassOf( ) +SubClassOf( ) + +# Class: (purine ribonucleotide) + +AnnotationAssertion( "Any ribonucleotide that has a purine nucleobase.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "purine ribonucleotides") +AnnotationAssertion( "CHEBI:26400") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine ribonucleotide") +SubClassOf( ) +SubClassOf( ) + +# Class: (purines) + +AnnotationAssertion( "A class of imidazopyrimidines that consists of purine and its substituted derivatives.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5N4R7") +AnnotationAssertion( "116.080") +AnnotationAssertion( "116.01230") +AnnotationAssertion( "CHEBI:13678") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:26401") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purines") +SubClassOf( ) + # Class: (quaternary nitrogen compound) AnnotationAssertion( "A nitrogen molecular entity that is electronically neutral but which contains a quaternary nitrogen.") @@ -20487,6 +21639,26 @@ AnnotationAssertion(rdfs:label "qua SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ribonucleotide) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleotides") +AnnotationAssertion( "CHEBI:26561") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribonucleotide") +SubClassOf( ) +SubClassOf( ) + +# Class: (ribose phosphate) + +AnnotationAssertion(Annotation( "ChEBI") "ribose phosphate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ribose phosphates") +AnnotationAssertion( "CHEBI:26562") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribose phosphate") +SubClassOf( ) + # Class: (saturated fatty acid) AnnotationAssertion( "Any fatty acid containing no carbon to carbon multiple bonds. Known to produce adverse biological effects when ingested to excess.") @@ -20620,6 +21792,17 @@ AnnotationAssertion(rdfs:label "ste SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (carbohydrate phosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "carbohydrate phosphates") +AnnotationAssertion( "CHEBI:26816") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbohydrate phosphate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + # Class: (sulfuric ester) AnnotationAssertion( "An ester of an alcohol and sulfuric acid.") @@ -20766,6 +21949,16 @@ AnnotationAssertion(rdfs:label "ter SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (oxolanes) + +AnnotationAssertion( "Any oxacycle having an oxolane (tetrahydrofuran) skeleton.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:26912") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxolanes") +SubClassOf( ) +SubClassOf( ) + # Class: (tetrapyrrole) AnnotationAssertion( "A natural pigment containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next.") @@ -21524,6 +22717,24 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (mononucleotide) + +AnnotationAssertion( "0") +AnnotationAssertion( "C5H10O7PR") +AnnotationAssertion( "213.103") +AnnotationAssertion( "213.01641") +AnnotationAssertion( "CHEBI:14616") +AnnotationAssertion( "CHEBI:25404") +AnnotationAssertion( "CHEBI:6983") +AnnotationAssertion( "KEGG:C02171") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Mononucleotide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mononucleotides") +AnnotationAssertion( "CHEBI:29075") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mononucleotide") +SubClassOf( ) + # Class: (sodium(1+)) AnnotationAssertion( "A monoatomic monocation obtained from sodium.") @@ -21945,6 +23156,31 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ATP(4-)) + +AnnotationAssertion( "A nucleoside triphosphate(4-) obtained by global deprotonation of the triphosphate OH groups of ATP; major species present at pH 7.3.") +AnnotationAssertion( "-4") +AnnotationAssertion( "C10H12N5O13P3") +AnnotationAssertion( "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/p-4/t4-,6-,7-,10-/m1/s1") +AnnotationAssertion( "ZKHQWZAMYRWXGA-KQYNXXCUSA-J") +AnnotationAssertion( "503.14946") +AnnotationAssertion( "502.96664") +AnnotationAssertion( "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3581767") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:342798") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "adenosine 5'-triphosphate(4-)") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "ATP") +AnnotationAssertion(Annotation( "IUPAC") "atp") +AnnotationAssertion( "CHEBI:30616") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ATP(4-)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (formic acid) AnnotationAssertion( "The simplest carboxylic acid, containing a single carbon. Occurs naturally in various sources including the venom of bee and ant stings, and is a useful organic synthetic reagent. Principally used as a preservative and antibacterial agent in livestock feed. Induces severe metabolic acidosis and ocular injury in human subjects.") @@ -22379,6 +23615,23 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (monoatomic hydrogen) + +AnnotationAssertion( "0") +AnnotationAssertion( "H") +AnnotationAssertion( "InChI=1S/H") +AnnotationAssertion( "YZCKVEUIGOORGS-UHFFFAOYSA-N") +AnnotationAssertion( "1.00794") +AnnotationAssertion( "1.00783") +AnnotationAssertion( "[H]") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "atomic hydrogen") +AnnotationAssertion( "CHEBI:33251") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monoatomic hydrogen") +SubClassOf( ) +SubClassOf( ) + # Class: (atomic nucleus) AnnotationAssertion( "A nucleus is the positively charged central portion of an atom, excluding the orbital electrons.") @@ -22436,6 +23689,16 @@ AnnotationAssertion( "elemental molecular entity") SubClassOf( ) +# Class: (elemental hydrogen) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33260") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "elemental hydrogen") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + # Class: (elemental oxygen) AnnotationAssertion( "chebi_ontology") @@ -22774,6 +24037,29 @@ AnnotationAssertion(rdfs:label "sul SubClassOf( ) SubClassOf( ) +# Class: (phospho sugar) + +AnnotationAssertion( "Any monosaccharide containing an alcoholic hydroxy group esterified with phosphoric acid.") +AnnotationAssertion( "CHEBI:15132") +AnnotationAssertion( "CHEBI:25406") +AnnotationAssertion( "CHEBI:26086") +AnnotationAssertion( "CHEBI:9320") +AnnotationAssertion( "KEGG:C00934") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:18186488") +AnnotationAssertion(Annotation( "ChEBI") "phospho sugar") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monosaccharide phosphates") +AnnotationAssertion(Annotation( "ChEBI") "phospho sugars") +AnnotationAssertion(Annotation( "ChEBI") "phosphorylated sugar") +AnnotationAssertion(Annotation( "ChEBI") "phosphorylated sugars") +AnnotationAssertion(Annotation( "ChEBI") "phosphosugar") +AnnotationAssertion(Annotation( "ChEBI") "phosphosugars") +AnnotationAssertion( "CHEBI:33447") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "phospho sugar") +SubClassOf( ) +SubClassOf( ) + # Class: (phosphorus oxoacid) AnnotationAssertion( "A pnictogen oxoacid which contains phosphorus and oxygen, at least one hydrogen atom bound to oxygen, and forms an ion by the loss of one or more protons.") @@ -23235,6 +24521,26 @@ AnnotationAssertion(rdfs:label "org SubClassOf( ) SubClassOf( ) +# Class: (monocyclic compound) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monocyclic compounds") +AnnotationAssertion( "CHEBI:33661") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monocyclic compound") +SubClassOf( ) + +# Class: (heteromonocyclic compound) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "heteromonocyclic compound") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "heteromonocyclic compounds") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:33670") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heteromonocyclic compound") +SubClassOf( ) +SubClassOf( ) + # Class: (heteropolycyclic compound) AnnotationAssertion( "A polycyclic compound in which at least one of the rings contains at least one non-carbon atom.") @@ -23617,6 +24923,32 @@ AnnotationAssertion( "conjugated protein") SubClassOf( ) +# Class: (nucleoside) + +AnnotationAssertion( "An N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H8O3R2") +AnnotationAssertion( "116.115") +AnnotationAssertion( "116.04734") +AnnotationAssertion( "[C@H]1([C@H]([C@@H](*)[C@@H](O1)*)O)CO") +AnnotationAssertion( "CHEBI:13661") +AnnotationAssertion( "CHEBI:25611") +AnnotationAssertion( "CHEBI:7647") +AnnotationAssertion( "KEGG:C00801") +AnnotationAssertion( "Wikipedia:Nucleoside") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nucleoside") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "nucleosides") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a nucleoside") +AnnotationAssertion(Annotation( "ChEBI") "nucleosides") +AnnotationAssertion( "CHEBI:33838") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (macromolecule) AnnotationAssertion( "A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.") @@ -23671,6 +25003,19 @@ AnnotationAssertion( "reagent") SubClassOf( ) +# Class: (aldopentose) + +AnnotationAssertion( "A pentose with a (potential) aldehyde group at one end.") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:10723607") +AnnotationAssertion(Annotation( "ChEBI") "aldopentose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "aldopentoses") +AnnotationAssertion( "CHEBI:33916") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aldopentose") +SubClassOf( ) +SubClassOf( ) + # Class: (aldohexose) AnnotationAssertion( "A hexose with a (potential) aldehyde group at one end.") @@ -23694,6 +25039,23 @@ AnnotationAssertion( "macronutrient") SubClassOf( ) +# Class: (ribose) + +AnnotationAssertion( "Any aldopentose where the open-chain form has all the hydroxy groups on the same side in the Fischer projection. Occurrs in two enantiomeric forms, D- and L-ribose, of which only the former is found in nature.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H10O5") +AnnotationAssertion( "150.130") +AnnotationAssertion( "150.05282") +AnnotationAssertion( "CHEBI:26564") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "ribo-pentose") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "ribose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "JCBN") "Rib") +AnnotationAssertion( "CHEBI:33942") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribose") +SubClassOf( ) + # Class: (serotonin(1+)) AnnotationAssertion( "An ammonium ion that is the conjugate acid of serotonin; major species at pH 7.3.") @@ -23735,6 +25097,15 @@ AnnotationAssertion( "azane") SubClassOf( ) +# Class: (aldose phosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "aldose phosphates") +AnnotationAssertion( "CHEBI:35131") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "aldose phosphate") +SubClassOf( ) + # Class: ((6'R)-beta,epsilon-carotene) AnnotationAssertion( "0") @@ -24189,6 +25560,16 @@ AnnotationAssertion(rdfs:label "alk SubClassOf( ) SubClassOf( ) +# Class: (analgesic) + +AnnotationAssertion( "An agent capable of relieving pain without the loss of consciousness or without producing anaesthesia. In addition, analgesic is a role played by a compound which is exhibited by a capability to cause a reduction of pain symptoms.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:35480") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "analgesic") +SubClassOf( ) +SubClassOf( ) + # Class: (central nervous system depressant) AnnotationAssertion( "A loosely defined group of drugs that tend to reduce the activity of the central nervous system.") @@ -24290,6 +25671,18 @@ AnnotationAssertion( "sympathomimetic agent") SubClassOf( ) +# Class: (heterocyclic organic fundamental parent) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "heterocyclic parent hydrides") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "heterocyclic fundamental parent") +AnnotationAssertion(Annotation( "ChEBI") "heterocyclic organic fundamental parents") +AnnotationAssertion(Annotation( "ChEBI") "organic heterocyclic fundamental parents") +AnnotationAssertion( "CHEBI:35552") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heterocyclic organic fundamental parent") +SubClassOf( ) + # Class: (cardiovascular drug) AnnotationAssertion( "A drug that affects the rate or intensity of cardiac contraction, blood vessel diameter or blood volume.") @@ -24301,6 +25694,18 @@ AnnotationAssertion( "cardiovascular drug") SubClassOf( ) +# Class: (mancude ring) + +AnnotationAssertion( "Any molecular entity that consists of a ring having (formally) the maximum number of noncumulative double bonds.") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "mancude-ring systems") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mancude rings") +AnnotationAssertion(Annotation( "IUPAC") "mancunide-ring systems") +AnnotationAssertion( "CHEBI:35568") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mancude ring") +SubClassOf( ) + # Class: (alpha-adrenergic agonist) AnnotationAssertion( "An agent that selectively binds to and activates alpha-adrenergic receptors.") @@ -24314,6 +25719,130 @@ AnnotationAssertion(rdfs:label "alp SubClassOf( ) SubClassOf( ) +# Class: (mancude organic heterobicyclic parent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mancude organic heterobicyclic parents") +AnnotationAssertion(Annotation( "ChEBI") "mancude-ring organic heterobicyclic parents") +AnnotationAssertion( "CHEBI:35570") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mancude organic heterobicyclic parent") +SubClassOf( ) +SubClassOf( ) + +# Class: (mancude organic heterocyclic parent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "mancude organic heterocyclic parents") +AnnotationAssertion(Annotation( "ChEBI") "mancude-ring organic heterocyclic parents") +AnnotationAssertion( "CHEBI:35571") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mancude organic heterocyclic parent") +SubClassOf( ) +SubClassOf( ) + +# Class: (organic mancude parent) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic mancude parents") +AnnotationAssertion(Annotation( "ChEBI") "organic mancude-ring parents") +AnnotationAssertion( "CHEBI:35573") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic mancude parent") +SubClassOf( ) +SubClassOf( ) + +# Class: (purine) + +AnnotationAssertion( "A heterobicyclic aromatic organic compound comprising a pyrimidine ring fused to an imidazole ring; the parent compound of the purines.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H4N4") +AnnotationAssertion( "120.112") +AnnotationAssertion( "120.04360") +AnnotationAssertion( "HMDB:HMDB0001366") +AnnotationAssertion( "KEGG:C15587") +AnnotationAssertion( "MetaCyc:PURINE") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:12865945") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:24088627") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "purine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:35584") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (1H-purine) + +AnnotationAssertion( "The 1H-tautomer of purine.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H4N4") +AnnotationAssertion( "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)") +AnnotationAssertion( "KDCGOANMDULRCW-UHFFFAOYSA-N") +AnnotationAssertion( "120.11210") +AnnotationAssertion( "120.04360") +AnnotationAssertion( "c1nc2c[nH]cnc2n1") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:2379911") +AnnotationAssertion(Annotation( "ChEBI") "1H-purine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:35586") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "1H-purine") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (3H-purine) + +AnnotationAssertion( "The 3H-tautomer of purine.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H4N4") +AnnotationAssertion( "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)") +AnnotationAssertion( "KDCGOANMDULRCW-UHFFFAOYSA-N") +AnnotationAssertion( "120.11222") +AnnotationAssertion( "120.04360") +AnnotationAssertion( "c1nc2cnc[nH]c2n1") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:6149478") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:7178185") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:7296170") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1210196") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "3H-purine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:35588") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "3H-purine") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (9H-purine) + +AnnotationAssertion( "The 9H-tautomer of purine.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H4N4") +AnnotationAssertion( "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)") +AnnotationAssertion( "KDCGOANMDULRCW-UHFFFAOYSA-N") +AnnotationAssertion( "120.11222") +AnnotationAssertion( "120.04360") +AnnotationAssertion( "c1ncc2nc[nH]c2n1") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:606899") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:120-73-0") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:3120") +AnnotationAssertion( "Wikipedia:Purine") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "9H-purine") +AnnotationAssertion(Annotation( "UniProt") "9H-purine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:35589") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "9H-purine") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (carbon oxoanion) AnnotationAssertion( "A negative ion consisting solely of carbon and oxygen atoms, and therefore having the general formula CxOy(n-) for some integers x, y and n.") @@ -24527,6 +26056,17 @@ AnnotationAssertion(rdfs:label "tet SubClassOf( ) SubClassOf( ) +# Class: (imidazopyrimidine) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "imidazopyrimidines") +AnnotationAssertion( "CHEBI:35875") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "imidazopyrimidine") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + # Class: (pnictogen hydride) AnnotationAssertion(Annotation( "ChEBI") "pnictogen hydride") @@ -25073,6 +26613,32 @@ AnnotationAssertion(rdfs:label "org SubClassOf( ) SubClassOf( ) +# Class: (nucleotide) + +AnnotationAssertion( "A nucleotide is a nucleoside phosphate resulting from the condensation of the 3 or 5 hydroxy group of a nucleoside with phosphoric acid.") +AnnotationAssertion( "CHEBI:13215") +AnnotationAssertion( "CHEBI:13663") +AnnotationAssertion( "CHEBI:7656") +AnnotationAssertion( "KEGG:C00215") +AnnotationAssertion( "Wikipedia:Nucleotide") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Nucleotide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "nucleotides") +AnnotationAssertion( "CHEBI:36976") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleotide") +SubClassOf( ) + +# Class: (ribonucleoside 5'-phosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside 5'-phosphates") +AnnotationAssertion( "CHEBI:37015") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribonucleoside 5'-phosphate") +SubClassOf( ) +SubClassOf( ) + # Class: (amino-acid anion) AnnotationAssertion(Annotation( "ChEBI") "amino-acid anion") @@ -25086,6 +26652,55 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (purine ribonucleoside 5'-diphosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "purine ribonucleoside 5'-diphosphates") +AnnotationAssertion( "CHEBI:37038") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine ribonucleoside 5'-diphosphate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (purine ribonucleoside 5'-triphosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "purine ribonucleoside 5'-triphosphates") +AnnotationAssertion( "CHEBI:37045") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "purine ribonucleoside 5'-triphosphate") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (ribonucleoside 5'-diphosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside 5'-diphosphates") +AnnotationAssertion( "CHEBI:37075") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribonucleoside 5'-diphosphate") +SubClassOf( ) + +# Class: (ribonucleoside 5'-triphosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside 5'-triphosphates") +AnnotationAssertion( "CHEBI:37076") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribonucleoside 5'-triphosphate") +SubClassOf( ) + +# Class: (adenosine 5'-phosphate) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "adenosine 5'-phosphates") +AnnotationAssertion( "CHEBI:37096") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "adenosine 5'-phosphate") +SubClassOf( ) + # Class: (glucan) AnnotationAssertion( "A polysaccharide composed of glucose residues.") @@ -25316,6 +26931,17 @@ AnnotationAssertion( "adrenergic agent") SubClassOf( ) +# Class: (anti-arrhythmia drug) + +AnnotationAssertion( "A drug used for the treatment or prevention of cardiac arrhythmias. Anti-arrhythmia drugs may affect the polarisation-repolarisation phase of the action potential, its excitability or refractoriness, or impulse conduction or membrane responsiveness within cardiac fibres.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "anti-arrhythmia agent") +AnnotationAssertion(Annotation( "ChEBI") "antiarrhythmic agent") +AnnotationAssertion( "CHEBI:38070") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "anti-arrhythmia drug") +SubClassOf( ) + # Class: (polypyrrole) AnnotationAssertion( "A compound composed of two or more pyrrole units.") @@ -25341,6 +26967,20 @@ AnnotationAssertion(rdfs:label "org SubClassOf( ) SubClassOf( ) +# Class: (oxacycle) + +AnnotationAssertion( "Any organic heterocyclic compound containing at least one ring oxygen atom.") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17134300") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "heterocyclic organooxygen compounds") +AnnotationAssertion(Annotation( "ChEBI") "organooxygen heterocyclic compounds") +AnnotationAssertion(Annotation( "ChEBI") "oxacycles") +AnnotationAssertion( "CHEBI:38104") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oxacycle") +SubClassOf( ) +SubClassOf( ) + # Class: (cardiotonic drug) AnnotationAssertion( "A drug that has a strengthening effect on the heart or that can increase cardiac output.") @@ -25853,6 +27493,32 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (ADP(3-)) + +AnnotationAssertion( "A nucleoside 5'-diphosphate(3-) arising from deprotonation of all three diphosphate OH groups of adenosine 5'-diphosphate (ADP); major species present at pH 7.3.") +AnnotationAssertion( "-3") +AnnotationAssertion( "C10H12N5O10P2") +AnnotationAssertion( "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/p-3/t4-,6-,7-,10-/m1/s1") +AnnotationAssertion( "XTWYTFMLZFPYCI-KQYNXXCUSA-K") +AnnotationAssertion( "424.17730") +AnnotationAssertion( "424.00759") +AnnotationAssertion( "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:3783669") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:341336") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "adenosine 5'-diphosphate") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "5'-O-[(phosphonatooxy)phosphinato]adenosine") +AnnotationAssertion(Annotation( "UniProt") "ADP") +AnnotationAssertion(Annotation( "ChEBI") "ADP trianion") +AnnotationAssertion( "CHEBI:456216") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ADP(3-)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (hydrogensulfate) AnnotationAssertion( "-1") @@ -25971,6 +27637,92 @@ AnnotationAssertion( "carboxy group") SubClassOf( ) +# Class: (L-ribose) + +AnnotationAssertion( "A ribose in which the chiral carbon atom furthest away from the aldehyde group (C4') has the same configuration as in L-glyceraldehyde.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H10O5") +AnnotationAssertion( "150.130") +AnnotationAssertion( "150.05282") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "L-ribo-pentose") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "L-ribose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "JCBN") "L-Rib") +AnnotationAssertion( "CHEBI:46997") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "L-ribose") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ribofuranose) + +AnnotationAssertion( "A cyclic ribose having a 5-membered tetrahydrofuran ring; the predominant (C3'-endo) form of the two cyclic structures (the other is the \"C2'-endo\" form, having a 6-membered ring) adopted by ribose in aqueous solution.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H10O5") +AnnotationAssertion( "150.12990") +AnnotationAssertion( "150.05282") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "ribofuranose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "rel-(3R,4S,5R)-5-(hydroxymethyl)tetrahydrofuran-2,3,4-triol") +AnnotationAssertion( "CHEBI:46998") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribofuranose") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (D-ribofuranose) + +AnnotationAssertion( "A ribofuranose having D-configuration.") +AnnotationAssertion( "0") +AnnotationAssertion( "C5H10O5") +AnnotationAssertion( "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5?/m1/s1") +AnnotationAssertion( "HMFHBZSHGGEWLO-SOOFDHNKSA-N") +AnnotationAssertion( "150.12990") +AnnotationAssertion( "150.05282") +AnnotationAssertion( "OC[C@H]1OC(O)[C@H](O)[C@@H]1O") +AnnotationAssertion( "CHEBI:4233") +AnnotationAssertion( "CHEBI:46999") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1904878") +AnnotationAssertion(Annotation( "KEGG COMPOUND") "CAS:50-69-1") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:613-83-2") +AnnotationAssertion( "GlyGen:G31080DL") +AnnotationAssertion( "GlyTouCan:G31080DL") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:364108") +AnnotationAssertion( "KEGG:C00121") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:9506998") +AnnotationAssertion( "Patent:US2152662") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1904878") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "D-ribofuranose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "IUPAC") "(3R,4S,5R)-5-(hydroxymethyl)tetrahydrofuran-2,3,4-triol") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "D-Ribose") +AnnotationAssertion(Annotation( "UniProt") "D-ribose") +AnnotationAssertion(Annotation( "GlyTouCan") "WURCS=2.0/1,1,0/[a222h-1x_1-4]/1/") +AnnotationAssertion(Annotation( "ChemIDplus") "ribose") +AnnotationAssertion( "CHEBI:47013") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "D-ribofuranose") +SubClassOf( ) +SubClassOf( ) + +# Class: (tetrahydrofuranol) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "tetrahydrofuranols") +AnnotationAssertion( "CHEBI:47017") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tetrahydrofuranol") +SubClassOf( ) + +# Class: (dihydroxytetrahydrofuran) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "dihydroxytetrahydrofurans") +AnnotationAssertion( "CHEBI:47019") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dihydroxytetrahydrofuran") +SubClassOf( ) + # Class: (acetate ester) AnnotationAssertion( "Any carboxylic ester where the carboxylic acid component is acetic acid.") @@ -26982,6 +28734,29 @@ AnnotationAssertion( "heterocyclic compound") SubClassOf( ) +# Class: (ATP(3-)) + +AnnotationAssertion( "A ribonucleoside triphosphate oxoanion that is the trianion of adenosine 5'-triphosphate arising from deprotonation of three of the four free triphosphate OH groups.") +AnnotationAssertion( "-3") +AnnotationAssertion( "C10H13N5O13P3") +AnnotationAssertion( "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/p-3/t4-,6-,7-,10-/m1/s1") +AnnotationAssertion( "ZKHQWZAMYRWXGA-KQYNXXCUSA-K") +AnnotationAssertion( "504.15720") +AnnotationAssertion( "503.97392") +AnnotationAssertion( "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP(O)([O-])=O)[C@@H](O)[C@H]1O") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:9535056") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:57299") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ATP(3-)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (chondroitin D-glucuronate anion) AnnotationAssertion( "Anionic form of chondroitin D-glucuronate arising from deprotonation of the carboxylic acid groups of the repeating units; major species at pH 7.3.") @@ -26995,6 +28770,23 @@ AnnotationAssertion(rdfs:label "cho SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (nucleoside 5'-phosphate dianion) + +AnnotationAssertion( "The conjugate base of a nucleoside 5'-phosphate.") +AnnotationAssertion( "-2") +AnnotationAssertion( "C5H7O6PR2") +AnnotationAssertion( "194.07920") +AnnotationAssertion( "193.99802") +AnnotationAssertion( "O[C@H]1[C@@H]([*])[C@H]([*])O[C@@H]1COP([O-])([O-])=O") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "a nucleoside 5'-phosphate") +AnnotationAssertion(Annotation( "ChEBI") "nucleoside 5'-phosphate dianions") +AnnotationAssertion( "CHEBI:57867") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside 5'-phosphate dianion") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (tryptaminium) AnnotationAssertion( "An ammonium ion that is the conjugate acid of tryptamine arising from protonation of the primary amino group; major species at pH 7.3.") @@ -27021,6 +28813,27 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (nucleoside 5'-diphosphate(3-)) + +AnnotationAssertion( "Trianion of nucleoside diphosphate arising from deprotonation of all three free OH groups of the diphosphate; major species at pH 7.3.") +AnnotationAssertion( "-3") +AnnotationAssertion( "C5H8O10P2R") +AnnotationAssertion( "290.059") +AnnotationAssertion( "289.95927") +AnnotationAssertion( "[C@H]1([C@H]([C@@H](O)[C@@H](O1)*)O)COP(OP([O-])(=O)[O-])(=O)[O-]") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "NDP trianion") +AnnotationAssertion(Annotation( "ChEBI") "NDP(3-)") +AnnotationAssertion(Annotation( "UniProt") "a ribonucleoside 5'-diphosphate") +AnnotationAssertion(Annotation( "ChEBI") "nucleoside diphosphate trianion") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside diphosphate trianion") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside diphosphate(3-)") +AnnotationAssertion( "CHEBI:57930") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside 5'-diphosphate(3-)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (bilirubin(2-)) AnnotationAssertion( "A dicarboxylic acid dianion obtained by deprotonation of the two carboxy groups of bilirubin; major species at pH 7.3.") @@ -27044,6 +28857,27 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (nucleoside 5'-triphoshate(3-)) + +AnnotationAssertion( "Trianion of nucleoside triphosphate arising from deprotonation of three of the four free triphosphate OH groups.") +AnnotationAssertion( "-3") +AnnotationAssertion( "C5H9O13P3R") +AnnotationAssertion( "370.039") +AnnotationAssertion( "369.92560") +AnnotationAssertion( "[C@H]1([C@H]([C@@H](O)[C@@H](O1)*)O)COP(OP(OP(=O)([O-])O)(=O)[O-])(=O)[O-]") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "NTP trianion") +AnnotationAssertion(Annotation( "ChEBI") "NTP(3-)") +AnnotationAssertion(Annotation( "ChEBI") "nucleoside triphosphate trianion") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside triphosphate trianion") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside triphosphate(3-)") +AnnotationAssertion( "CHEBI:58104") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside 5'-triphoshate(3-)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (histaminium) AnnotationAssertion( "An ammonium ion that is the conjugate acid of histamine protonated on the side-chain nitrogen.") @@ -27178,6 +29012,18 @@ AnnotationAssertion( "phosphoric acids") SubClassOf( ) +# Class: (ribonucleoside triphosphate oxoanion) + +AnnotationAssertion( "An organophosphate anion resulting from deprotonation of at least one of the acidic hydroxy groups from the triphosphate moiety of a nucleoside triphosphate.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside triphosphate anion") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside triphosphate anions") +AnnotationAssertion(Annotation( "ChEBI") "ribonucleoside triphosphate oxoanions") +AnnotationAssertion( "CHEBI:59724") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ribonucleoside triphosphate oxoanion") +SubClassOf( ) + # Class: (nucleophilic reagent) AnnotationAssertion( "A reagent that forms a bond to its reaction partner (the electrophile) by donating both bonding electrons.") @@ -27476,6 +29322,27 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (adenyl nucleotide) + +AnnotationAssertion( "A nucleotide having adenine as the base.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "adenine nucleotide") +AnnotationAssertion( "CHEBI:61293") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "adenyl nucleotide") +SubClassOf( ) + +# Class: (adenyl ribonucleotide) + +AnnotationAssertion( "A purine riboncleotide where adenine is the purine.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "adenine ribonucleotide") +AnnotationAssertion( "CHEBI:61296") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "adenyl ribonucleotide") +SubClassOf( ) +SubClassOf( ) + # Class: (C21-steroid) AnnotationAssertion( "A steroid that has a structure based on a 21-carbon (pregnane) skeleton. Note that individual examples may have ring substituents at other positions and/or contain double bonds, aromatic A-rings, expanded/contracted rings etc., so the formula and mass may vary from that given for the generic structure.") @@ -27505,6 +29372,26 @@ AnnotationAssertion(rdfs:label "pol SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (nucleoside 5'-triphoshate(4-)) + +AnnotationAssertion( "A ribonucleoside triphosphate oxoanion arising from global deprotonation of the triphosphate groups of any nucleoside triphosphate; major species at pH 7.3.") +AnnotationAssertion( "-4") +AnnotationAssertion( "C5H8O13P3R") +AnnotationAssertion( "369.031") +AnnotationAssertion( "368.91778") +AnnotationAssertion( "[C@H]1([C@H]([C@@H](O)[C@@H](O1)*)O)COP(OP(OP(=O)([O-])[O-])(=O)[O-])(=O)[O-]") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "NTP tetraanion") +AnnotationAssertion(Annotation( "SUBMITTER") "NTP(4-)") +AnnotationAssertion(Annotation( "UniProt") "a ribonucleoside 5'-triphosphate") +AnnotationAssertion(Annotation( "ChEBI") "nucleoside 5'-triphosphate tetraanion") +AnnotationAssertion(Annotation( "ChEBI") "nucleoside triphosphate(4-)") +AnnotationAssertion( "CHEBI:61557") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside 5'-triphoshate(4-)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (polar amino acid zwitterion) AnnotationAssertion( "Zwitterionic form of a polar amino acid having an anionic carboxy group and a protonated amino group.") @@ -27560,6 +29447,16 @@ AnnotationAssertion(rdfs:label "gly SubClassOf( ) SubClassOf( ) +# Class: (glycosyl compound) + +AnnotationAssertion( "A carbohydrate derivative arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to an oxygen, carbon, nitrogen or sulfur atom of a separate entity.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "glycosyl compounds") +AnnotationAssertion( "CHEBI:63161") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "glycosyl compound") +SubClassOf( ) + # Class: (oxidising agent) AnnotationAssertion( "A substance that removes electrons from another reactant in a redox reaction.") @@ -27593,6 +29490,28 @@ AnnotationAssertion(rdfs:label "car SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (monosaccharide derivative) + +AnnotationAssertion( "A carbohydrate derivative that is formally obtained from a monosaccharide.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "monosaccharide derivatives") +AnnotationAssertion( "CHEBI:63367") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "monosaccharide derivative") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pentose derivative) + +AnnotationAssertion( "A monosaccharide derivative that is formally obtained from a pentose.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "pentose derivatives") +AnnotationAssertion( "CHEBI:63409") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pentose derivative") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (carbohydrate acid derivative) AnnotationAssertion( "A carbohydrate derivative that is formally obtained from a carbohydrate acid.") @@ -28717,6 +30636,17 @@ AnnotationAssertion(rdfs:label "non SubClassOf( ) SubClassOf( ) +# Class: (pentose phosphate) + +AnnotationAssertion( "Any phospho sugar that is the phosphate derivative of pentose.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "pentose phosphates") +AnnotationAssertion( "CHEBI:84055") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pentose phosphate") +SubClassOf( ) +SubClassOf( ) + # Class: (human urinary metabolite) AnnotationAssertion( "Any metabolite (endogenous or exogenous) found in human urine samples.") @@ -28747,6 +30677,26 @@ AnnotationAssertion( "algal metabolite") SubClassOf( ) +# Class: (ADP(2-)) + +AnnotationAssertion( "An organophosphate oxoanion obtained by deprotonation of two of the three diphosphate OH groups of adenosine 5'-diphosphate.") +AnnotationAssertion( "-2") +AnnotationAssertion( "C10H13N5O10P2") +AnnotationAssertion( "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/p-2/t4-,6-,7-,10-/m1/s1") +AnnotationAssertion( "XTWYTFMLZFPYCI-KQYNXXCUSA-L") +AnnotationAssertion( "425.18630") +AnnotationAssertion( "425.01486") +AnnotationAssertion( "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP(O)([O-])=O)[C@@H](O)[C@H]1O") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:7558006") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "5'-O-{[(hydroxyphosphinato)oxy]phosphinato}adenosine") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:87518") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ADP(2-)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (receptor modulator) AnnotationAssertion( "A drug that acts as an antagonist, agonist, reverse agonist, or in some other fashion when interacting with cellular receptors.") @@ -29037,6 +30987,7 @@ AnnotationAssertion( "CALOHA:TS-2086") AnnotationAssertion( "FMA:63368") AnnotationAssertion( "animal stem cell") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’.") AnnotationAssertion(rdfs:label "stem cell") @@ -29105,6 +31056,7 @@ SubClassOf( ObjectSomeValuesFrom( (germ line cell) AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0721662544") "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring.") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Originally this term had some plant germ line cell children.") AnnotationAssertion(rdfs:label "germ line cell") @@ -29237,7 +31189,9 @@ AnnotationAssertion( "BTO:0000452") AnnotationAssertion( "CALOHA:TS-0362") AnnotationAssertion( "FMA:63877") +AnnotationAssertion( "NCIT:C12482") AnnotationAssertion( "VHOG:0001482") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative.") AnnotationAssertion(rdfs:label "fibroblast") @@ -29333,6 +31287,7 @@ AnnotationAssertion( "FMA:66768") AnnotationAssertion( "WBbt:0003672") AnnotationAssertion( "epitheliocyte") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell") SubClassOf( ) @@ -29423,6 +31378,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:add") Annotation( "GOC:tfm") "A cell found predominately in the blood.") AnnotationAssertion( "FMA:62844") AnnotationAssertion( "MESH:D001773") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "blood cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) @@ -29464,6 +31420,7 @@ AnnotationAssertion( "T-lymphocyte") AnnotationAssertion( "immature T cell") AnnotationAssertion( "mature T cell") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "T cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -29644,6 +31601,7 @@ SubClassOf( ObjectSomeValuesFrom( (granule cell) +AnnotationAssertion(Annotation( ) "A neuron of the vertebrate central nervous system that is small in size. This general class includes small neurons in the granular layer of the cerebellar cortex, cerebral cortex neurons that are not pyramidal cells and small neurons without axons found in the olfactory bulb.") AnnotationAssertion( "BTO:0003393") AnnotationAssertion(rdfs:label "granule cell") SubClassOf( ) @@ -29687,6 +31645,7 @@ AnnotationAssertion( "FMA:54536") AnnotationAssertion( "neuroglial cell") AnnotationAssertion( "neuroglia") +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Not all glial cells develop from glioblasts, with microglia developing from the mesoderm instead. See https://github.com/obophenotype/cell-ontology/issues/1571") AnnotationAssertion(rdfs:label "glial cell") SubClassOf( ) @@ -29782,6 +31741,7 @@ AnnotationAssertion( "FMA:63880") AnnotationAssertion( "adipocyte") AnnotationAssertion( "adipose cell") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "fat cell") SubClassOf( ) @@ -29852,6 +31812,7 @@ AnnotationAssertion( "MESH:D008544") AnnotationAssertion( "VHOG:0001679") AnnotationAssertion( "melanophore") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "melanocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) @@ -29891,6 +31852,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "ISBN:0198547684") "A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct.") AnnotationAssertion( "FMA:16014") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "exocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -29932,7 +31894,7 @@ SubClassOf(Annotation( # Class: (club cell) -AnnotationAssertion(Annotation( "DOI:10.1183/09031936.00146609") Annotation( "DOI:https://doi.org/10.1378/chest.12-2762") Annotation( "GOC:tfm") Annotation( "PMID:28128362") Annotation( "PMID:29874100") Annotation( "PMID:7905712") "A non-mucous, epithelial secretory cell that is part of the tracheobronchial tree. A club cell has short microvilli but no cilia. A club cell is able to multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium and it also protects the tracheobronchial epithelium.") +AnnotationAssertion(Annotation( "DOI:10.1183/09031936.00146609") Annotation( "DOI:10.1378/chest.12-2762") Annotation( "GOC:tfm") Annotation( "PMID:28128362") Annotation( "PMID:29874100") Annotation( "PMID:7905712") "A non-mucous, epithelial secretory cell that is part of the tracheobronchial tree. A club cell has short microvilli but no cilia. A club cell is able to multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium and it also protects the tracheobronchial epithelium.") AnnotationAssertion( ) AnnotationAssertion( "BTO:0004811") AnnotationAssertion( "FMA:14119") @@ -29984,6 +31946,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "FMA:83809") AnnotationAssertion( "endocrinocyte") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) @@ -30228,6 +32191,7 @@ AnnotationAssertion( "CALOHA:TS-2158") AnnotationAssertion( "FMA:9727") AnnotationAssertion( "skeletal muscle cell") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell of skeletal muscle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -30261,6 +32225,7 @@ AnnotationAssertion( "PMID:9315361") "SMCs") AnnotationAssertion(Annotation( "MESH:D032389") "myocytes, smooth muscle") AnnotationAssertion( "smooth muscle fiber") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle cell") SubClassOf( ) @@ -30495,10 +32460,13 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Platelets are reportedly CCR1-positive, CCR2-negative, CCR3-positive, CCR4-positive, CCR5-negative, CCR6-negative, CCR7-negative, CCR8-negative, CCR9-negative, CCR10-negative, CD16-positive, CD23-positive, CD32-positive, CD40-positive, CD41-positive CD42-positive, CD61-positive, CD62P-positive, CD64-positive, CD89-positive, CD102-positive, CD147-positive (activated platelets), CD154-positive (activated platelets), CD162-positive, CD209, CD282-positive, CD284-positive, CD289-positive, CD181-negative, CD182-negative, CD183-negative, CD184-positive, CLEC2-positive, GPVI-positive, JAMC-positive, PAR1-positive, PAR2-negative, PAR3-positive, PAR4-positive, TSP1-positive, and TXA2R-positive. Platelets can reportedly produce CCL2, CCL3, CCL5, CCL7, CCL17, CD40L, CXCL1, CXCL4, CXCL4L1, CXCL5, CXCL7, CXCL8, CXCL12, EGF, factor V, factor VII, factor XI, factor XIII, bFGF, histamine, IGF-1, IL-1beta, PAI-1, PDGF, plasminogen, protein S, serotonin, TGF-beta, TFPI, VEGF, and vWF.") AnnotationAssertion(rdfs:label "platelet") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (phagocyte) @@ -30524,6 +32492,7 @@ AnnotationAssertion( "MESH:D008264") AnnotationAssertion( "histiocyte") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid.") AnnotationAssertion(rdfs:label "macrophage") @@ -30544,6 +32513,7 @@ AnnotationAssertion( "B-cell") AnnotationAssertion( "B-lymphocyte") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -30814,6 +32784,7 @@ SubClassOf( ObjectSomeValuesFrom( (extraembryonic cell) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "extraembryonic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -31048,11 +33019,14 @@ AnnotationAssertion( "melanocyte stimulating hormone secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (follicle stem cell) +# Class: (follicle stem cell (sensu Arthropoda)) +AnnotationAssertion(Annotation( "doi:10.1016/B978-012369493-5.50005-5") Annotation( "doi:10.1038/s41467-020-19361-0") Annotation( "doi:10.1242/dev.121.11.3797") "A stem cell that gives rise to the follicle cells that surround the oocyte in female arthropods.") +AnnotationAssertion(Annotation( "doi:10.1016/j.devcel.2005.08.012") "somatic stem cell") AnnotationAssertion( "FBbt:00004903") -AnnotationAssertion(rdfs:label "follicle stem cell") +AnnotationAssertion(rdfs:label "follicle stem cell (sensu Arthropoda)") SubClassOf( ) +SubClassOf(Annotation( "https://github.com/obophenotype/cell-ontology/issues/1943") ObjectSomeValuesFrom( )) # Class: (calcitonin secreting cell) @@ -31120,6 +33094,7 @@ AnnotationAssertion( "MESH:D003713") AnnotationAssertion( "interdigitating cell") AnnotationAssertion( "veiled cell") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) @@ -31241,6 +33216,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "BTO:0002064") AnnotationAssertion( "FMA:83624") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stromal cell") SubClassOf( ) @@ -31403,10 +33379,10 @@ AnnotationAssertion( "VHOG:0001483") AnnotationAssertion( "WBbt:0003679") AnnotationAssertion( "nerve cell") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma.") AnnotationAssertion(rdfs:label "neuron") -SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -31704,6 +33680,7 @@ AnnotationAssertion( "CALOHA:TS-0638") AnnotationAssertion( "FMA:62864") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid.") AnnotationAssertion(rdfs:label "monocyte") @@ -31715,6 +33692,7 @@ SubClassOf( ObjectSomeValuesFrom( "MESH:D005854") "The reproductive cell in multicellular organisms.") AnnotationAssertion( "BTO:0000535") +AnnotationAssertion( "NCIT:C12597") AnnotationAssertion( "VHOG:0001534") AnnotationAssertion( "WBbt:0006796") AnnotationAssertion(rdfs:label "germ cell") @@ -32183,14 +34161,11 @@ SubClassOf( (urothelial cell) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "MA:ma") "A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "MA:ma") Annotation( "doi:10.1038/s41385-022-00565-0") "A cell of a layer of transitional epithelium in the wall of the proximal urethra, bladder, ureter or renal pelvis, external to the lamina propria.") AnnotationAssertion( "FMA:84127") -AnnotationAssertion( "bladder transitional cell") -AnnotationAssertion( "transitional epithelial cell of urinary bladder") AnnotationAssertion( "urinary tract transitional epithelial cell") AnnotationAssertion(rdfs:label "urothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) # Class: (striated muscle cell) @@ -32212,6 +34187,7 @@ AnnotationAssertion( "CALOHA:TS-0549") AnnotationAssertion( "FMA:62852") AnnotationAssertion( "MESH:D007962") +AnnotationAssertion( "NCIT:C12529") AnnotationAssertion( "leucocyte") AnnotationAssertion( "white blood cell") AnnotationAssertion( "immune cell") @@ -32265,6 +34241,7 @@ AnnotationAssertion(Annotation( "cardiac myocyte") AnnotationAssertion( "cardiomyocyte") AnnotationAssertion( "heart muscle cell") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction.") AnnotationAssertion(rdfs:label "cardiac muscle cell") @@ -33374,6 +35351,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( ) AnnotationAssertion( "2011-11-16T04:28:16Z") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bone cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -33940,6 +35918,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "type II pneumocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreatic acinar cell) @@ -34039,6 +36018,15 @@ AnnotationAssertion(rdfs:label "myoc SubClassOf( ) SubClassOf( ) +# Class: (brush cell of trachebronchial tree) + +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0517223651") Annotation( "PMID:15817800") "Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known.") +AnnotationAssertion( ) +AnnotationAssertion( "2010-06-29T03:22:46Z") +AnnotationAssertion( "pulmonary brush cell") +AnnotationAssertion(rdfs:label "brush cell of trachebronchial tree") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (endo-epithelial cell) AnnotationAssertion(Annotation( "FMA:69075") Annotation( "GOC:tfm") "An epithelial cell derived from endoderm.") @@ -34849,6 +36837,76 @@ AnnotationAssertion(rdfs:label "epit EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (brush cell of epithelium proper of large intestine) + +AnnotationAssertion(Annotation( "GOC:tfm") "Brush cell found in the epithelial layer of the colon.") +AnnotationAssertion( ) +AnnotationAssertion( "2010-09-02T02:20:50Z") +AnnotationAssertion( "FMA:263222") +AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-4183-8865") "brush cell of large intestine") +AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-4183-8865") "tuft cell of epithelium of large intestine") +AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-4183-8865") "tuft cell of large intestine") +AnnotationAssertion(rdfs:comment "Brush cells are a distinct cell type from brush border cell-types.") +AnnotationAssertion(rdfs:label "brush cell of epithelium proper of large intestine") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) + +# Class: (brush cell) + +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0517223651") Annotation( "PMID:15817800") "A cell type found in the gastrointestinal and respiratory tracts that is characterized by the presence of a tuft of blunt, squat microvilli (120-140 per cell). Function of this cell type is not known.") +AnnotationAssertion( ) +AnnotationAssertion( "2010-09-02T02:28:53Z") +AnnotationAssertion( "FMA:67978") +AnnotationAssertion( "caveolated cell") +AnnotationAssertion( "fibrillovesicular cell") +AnnotationAssertion( "multivesicular cell") +AnnotationAssertion( "tuft cell") +AnnotationAssertion(rdfs:label "brush cell") +SubClassOf( ) + +# Class: (brush cell of lobular bronchiole) + +AnnotationAssertion(Annotation( "GOC:tfm") "A brush cell found in the epithelium of lobular bronchiole.") +AnnotationAssertion( ) +AnnotationAssertion( "2010-09-02T02:38:34Z") +AnnotationAssertion( "FMA:263220") +AnnotationAssertion(rdfs:label "brush cell of lobular bronchiole") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (brush cell of terminal bronchiole) + +AnnotationAssertion(Annotation( "GOC:tfm") "A brush cell of the epithelium in the terminal bronchiole.") +AnnotationAssertion( ) +AnnotationAssertion( "2010-09-02T02:38:36Z") +AnnotationAssertion( "FMA:263228") +AnnotationAssertion(rdfs:label "brush cell of terminal bronchiole") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (brush cell of trachea) + +AnnotationAssertion(Annotation( "GOC:tfm") "Brush cell of the epithelium in the trachea.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2010-09-02T02:38:37Z") +AnnotationAssertion( "FMA:263224") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "brush cell of trachea") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf(Annotation( "true") ) +SubClassOf(Annotation( "true") ) + +# Class: (brush cell of bronchus) + +AnnotationAssertion(Annotation( "GOC:tfm") "A brush cell found in the epithelium of bronchus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2010-09-02T02:38:42Z") +AnnotationAssertion( "FMA:263226") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "brush cell of bronchus") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (intermediate epitheliocyte) AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:0517223651") "An epithelial cell present in the trachea and bronchi; columnar in shape; generally lack cilia; immature forms of ciliated or secretory cells which have been formed from stem cells.") @@ -35476,6 +37534,16 @@ AnnotationAssertion(rdfs:label "bron EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (basal epithelial cell of tracheobronchial tree) + +AnnotationAssertion(Annotation( "GOC:tfm") "An epithelial cell type that lacks the columnar shape typical for other respiratory epithelial cells. This cell type is able to differentiate into other respiratory epithelial cells in response to injury.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2010-09-20T02:10:36Z") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "basal epithelial cell of tracheobronchial tree") +SubClassOf( ) + # Class: (ciliated cell of the bronchus) AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:18757316") "A ciliated cell of the bronchus.") @@ -37104,6 +39172,13 @@ AnnotationAssertion(rdfs:label "spin EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +# Class: (ionocyte) + +AnnotationAssertion(Annotation( "PMID:17555741") Annotation( "PMID:19268451") "Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment.") +AnnotationAssertion(rdfs:label "ionocyte") +SubClassOf( ) +SubClassOf( ) + # Class: (macular hair cell) AnnotationAssertion(Annotation( "GO:cvs") "An auditory hair cell located in the macula that is sensitive to auditory stimuli.") @@ -37492,6 +39567,7 @@ SubClassOf( "GOC:pr") "Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.") AnnotationAssertion( "PMID:10702418") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "retinal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -37559,6 +39635,17 @@ AnnotationAssertion( "nephrogenic zone cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (tuft cell of appendix) + +AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-3440-1876") "An intestinal tuft cell that is a part of a vermiform appendix.") +AnnotationAssertion( ) +AnnotationAssertion( "appendix tuft cell") +AnnotationAssertion( "tuft cell of appendix vermiformis") +AnnotationAssertion( "tuft cell of vermiform appendix") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tuft cell of appendix") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (stromal cell of lamina propria of large intestine) AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-4183-8865") "A stromal cell found in the lamina propria of the large intestine.") @@ -37736,6 +39823,15 @@ AnnotationAssertion( "stromal cell of lamina propria of colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (tuft cell of colon) + +AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-3440-1876") "A tuft cell that is a part of the colon.") +AnnotationAssertion( ) +AnnotationAssertion( "colon tuft cell") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tuft cell of colon") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (enteroendocrine cell of colon) AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-3440-1876") "An enteroendocrine cell that is located in the colon.") @@ -37912,6 +40008,15 @@ AnnotationAssertion( "lymph node paracortex T cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (tuft cell of anorectum) + +AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-3440-1876") "An intestinal tuft cell that is located in the anorectum.") +AnnotationAssertion( ) +AnnotationAssertion( "anorectum tuft cell") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tuft cell of anorectum") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (stratified squamous epithelial cell of anal canal) AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-3440-1876") "A stratified squamous epithelial cell that is part of the anal canal.") @@ -37922,6 +40027,19 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "stratified squamous epithelial cell of anal canal") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (tuft cell of small intestine) + +AnnotationAssertion(Annotation( "http://orcid.org/0000-0003-3440-1876") Annotation( "http://orcid.org/0000-0003-4183-8865") "A tuft cell located in the small intestine.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "brush cell of epithelium of small intestine") +AnnotationAssertion( "brush cell of epithelium proper of small intestine") +AnnotationAssertion( "brush cell of small intestine") +AnnotationAssertion( "tuft cell of epithelium of small intestine") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tuft cell of small intestine") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (epithelial cell of endometrial gland) AnnotationAssertion(Annotation( "https://orcid.org/0000-0003-3440-1876") Annotation( "https://orcid.org/0000-0003-4183-8865") "An epithelial cell that is part of an endometrial gland.") @@ -38311,6 +40429,14 @@ AnnotationAssertion(rdfs:label "chor EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (sympathetic neuron) + +AnnotationAssertion(Annotation( "GOC:NV") Annotation( "isbn:0080923437") "Sympathetic neurons are part of the sympathetic nervous system and are primarily adrenergic producing the neurotransmitter noradrenalin along with other neuropeptides.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sympathetic neuron") +SubClassOf( ) + # Class: (colon epithelial cell) AnnotationAssertion(Annotation( "GOC:NV") "Epithelial cell that is part of the colon epithelium.") @@ -38362,6 +40488,16 @@ AnnotationAssertion(rdfs:label "fore EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (pulmonary ionocyte) + +AnnotationAssertion(Annotation( "PMID:30069044") Annotation( "PMID:30069046") "An ionocyte that is part of the lung epithelium. The cells from this type are major sources of the CFTR protein in human and mice.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pulmonary ionocyte") +SubClassOf( ) +SubClassOf( ) + # Class: (prostate neuroendocrine cell) AnnotationAssertion(Annotation( "PMID:33842835") Annotation( "http://orcid.org/0000-0001-7772-9578") "A neuroendocrine cell that is part of the prostate epithelium.") @@ -38568,6 +40704,17 @@ AnnotationAssertion(Annotation( "intestine goblet cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (intestinal tuft cell) + +AnnotationAssertion(Annotation( "PMID:22527717") "Any brush cell that is part of the intestinal epithelium.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2020-10-15T12:47:46Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:22527717") "intestinal brush cell") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "intestinal tuft cell"@en) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (retrotrapezoid nucleus neuron) AnnotationAssertion(rdfs:label "retrotrapezoid nucleus neuron") @@ -39412,8 +41559,7 @@ AnnotationAssertion(Annotation( "FMA:70598") AnnotationAssertion(Annotation( "FMA:70598") "epithelial cell of vesical trigone") AnnotationAssertion(rdfs:label "urothelial cell of trigone of urinary bladder") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) # Class: (ciliary muscle cell) @@ -39635,11 +41781,14 @@ SubClassOf(Annotation( # Class: (basal cell of urothelium) -AnnotationAssertion(Annotation( "GOC:tfm") "A basal cell that is part of the urothelium.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "doi:10.1038/s41385-022-00565-0") "A basal cell that is part of the urothelium. Compared to other urothelial cell types, a basal cell of the urothelium is positioned along the basement membrane, is the most undifferentiated and serves a progenitor role.") AnnotationAssertion( "FMA:84150") +AnnotationAssertion(Annotation( "doi:10.1007/978-3-030-14366-4_8") Annotation( "doi:10.1111/cpr.13170") "urothelial basal cell") +AnnotationAssertion(Annotation( "doi:10.1038/s41385-022-00565-0") rdfs:comment "It has been noted in at least some mammalian species that the urothelial basal cell type is distinguished by expression of high levels of cytokeratin-5 (CK5), p63 and the signalling molecule Sonic hedgehog (Shh). Similar to intermediate cells, the urothelial basal cell type expresses CK17 but is negative for uroplakins (UPK) and CK20. Urothelial basal cells have also been noted to be smaller in diameter than urothelial intermediate cells.") AnnotationAssertion(rdfs:label "basal cell of urothelium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (smooth muscle cell of prostate) @@ -40590,14 +42739,15 @@ SubClassOf( ObjectSomeValuesFrom( (bladder urothelial cell) +AnnotationAssertion(Annotation( "doi:10.1038/s41385-022-00565-0") "A urothelial cell that is part of the urothelium of the urinary bladder.") AnnotationAssertion( ) AnnotationAssertion( "KUPO:0001121") +AnnotationAssertion( "NCIT:C32210") +AnnotationAssertion( "bladder transitional cell") +AnnotationAssertion( "transitional epithelial cell of urinary bladder") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bladder urothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (urethra urothelial cell) @@ -41881,6 +44031,26 @@ AnnotationAssertion( "ciliated epithelial cell of esophagus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (sympathetic noradrenergic neuron) + +AnnotationAssertion(Annotation( "GOC:CellBLAST") Annotation( "PMID:30096314") "Sympathetic noradrenergic neuron.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2019-02-25T19:30:14Z") +AnnotationAssertion( "CL:3000002") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sympathetic noradrenergic neuron") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (sympathetic cholinergic neuron) + +AnnotationAssertion(Annotation( "GOC:CellBLAST") Annotation( "PMID:30096314") "Sympathetic cholinergic neuron.") +AnnotationAssertion( ) +AnnotationAssertion( "2019-02-25T19:32:20Z") +AnnotationAssertion( "CL:3000003") +AnnotationAssertion(rdfs:label "sympathetic cholinergic neuron") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (peripheral sensory neuron) AnnotationAssertion(Annotation( "GOC:CellBLAST") Annotation( "PMID:30096314") "Peripheral sensory neuron.") @@ -42110,7 +44280,7 @@ SubClassOf( (stromal cell of thymus) -AnnotationAssertion(Annotation( ) "A stromal cell that is part of the thymus.") +AnnotationAssertion(Annotation( "doi:10.1038/s41467-020-20082-7") "A stromal cell that is part of the thymus.") AnnotationAssertion( ) AnnotationAssertion( "2022-07-08T11:39:38Z"^^xsd:dateTime) AnnotationAssertion( "thymic stromal cell") @@ -42264,7 +44434,7 @@ SubClassOf( (endometrial ciliated epithelial cell) -AnnotationAssertion(Annotation( "https://www.nature.com/articles/s41591-020-1040-z") Annotation( "https://www.proteinatlas.org/humanproteome/single+cell+type/Glandular+epithelial+cells#endometrialciliatedcells") "A ciliated cell of the endometrial epithelium. The cilia of this cell type help move mucus from glandular tissue of the endometrium.") +AnnotationAssertion(Annotation( "doi:10.1038/s41591-020-1040-z") Annotation( "https://www.proteinatlas.org/humanproteome/single+cell+type/Glandular+epithelial+cells#endometrialciliatedcells") "A ciliated cell of the endometrial epithelium. The cilia of this cell type help move mucus from glandular tissue of the endometrium.") AnnotationAssertion( "2023-02-09T11:25:14Z"^^xsd:dateTime) AnnotationAssertion( "ciliated cell of the uterus") AnnotationAssertion( "uterine ciliated cell") @@ -42325,6 +44495,15 @@ AnnotationAssertion( "endothelial cell of efferent lymphatic vessel") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (brush cell of epithelium of lobar bronchus) + +AnnotationAssertion(Annotation( "PMID:15817800") "A(n) brush cell that is part of a(n) epithelium of lobar bronchus.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "brush cell of epithelium of lobar bronchus") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (vein endothelial cell of respiratory system) AnnotationAssertion(Annotation( "PMID:34030460") "A(n) vein endothelial cell that is part of a(n) respiratory system.") @@ -42502,6 +44681,18 @@ AnnotationAssertion(rdfs:label "ente EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (fetal pre-type II pneumocyte) + +AnnotationAssertion(Annotation( "PMID:1316350") "Precursor of type II pneumocyte. These cells do not have lamellar bodies, which are a marker of type II pneumocyte maturity.") +AnnotationAssertion( ) +AnnotationAssertion( "2023-06-02T09:19:31Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:9624168") "fetal alveolar pre-type II epithelial cell") +AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-0819-0473") "fetal pre-type 2 pneumocyte") +AnnotationAssertion(Annotation( "PMID:12114192") "fetal pre-type II alveolar epithelial cell") +AnnotationAssertion( "According to PMID:1316350 this cell type does not yet produce surfactant. According to PMID:9109447 and PMID:12114192 this cell type produces low levels of surfactant that can be increased by administration of very low-density lipoproteins. This cell type is of medical relevance, as a central feature of the fetal respiratory distress syndrome seems to be the presence in the lung of abundant pre-type II alveolar epithelial cells (PMID:1316350).") +AnnotationAssertion(rdfs:label "fetal pre-type II pneumocyte") +SubClassOf( ) + # Class: (reproduction) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:isa_complete") Annotation( "GOC:jl") Annotation( "ISBN:0198506732") "The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.") @@ -42602,6 +44793,19 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) +# Class: (nucleotide binding) + +AnnotationAssertion(Annotation( "GOC:mah") Annotation( "ISBN:0198547684") "Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0000166") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleotide binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + # Class: (microtubule cytoskeleton organization) AnnotationAssertion(Annotation( "GOC:mah") "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.") @@ -42683,6 +44887,16 @@ AnnotationAssertion( "nuclear division") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (adenine nucleotide transmembrane transporter activity) + +AnnotationAssertion(Annotation( "PMID:11566870") "Enables the transfer of adenine nucleotides (AMP, ADP, and ATP) from one side of a membrane to the other.") +AnnotationAssertion(Annotation(rdfs:label "PMP34-mediated exchange of cytosolic ATP for peroxisomal AMP") "Reactome:R-HSA-389652") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0000295") +AnnotationAssertion(rdfs:label "adenine nucleotide transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (organellar ribosome) AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:mcc") "A ribosome contained within a subcellular membrane-bounded organelle.") @@ -42885,6 +45099,8 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0001505") AnnotationAssertion(rdfs:label "regulation of neurotransmitter levels") +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectAllValuesFrom( )) # Class: (action potential) @@ -43073,6 +45289,75 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (G protein-coupled adenosine receptor activity) + +AnnotationAssertion(Annotation( "GOC:bf") Annotation( "GOC:mah") Annotation( "PMID:9755289") "Combining with adenosine and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.") +AnnotationAssertion( "GO:0001610") +AnnotationAssertion( "GO:0001611") +AnnotationAssertion( "GO:0001612") +AnnotationAssertion( "GO:0001613") +AnnotationAssertion( "GO:0008501") +AnnotationAssertion( "adenosine nucleotide receptor") +AnnotationAssertion( "G protein coupled adenosine receptor activity") +AnnotationAssertion( "G-protein coupled adenosine receptor activity") +AnnotationAssertion(Annotation( "PMID:9755289") "P1 receptor") +AnnotationAssertion( "adenosine receptor activity, G protein coupled") +AnnotationAssertion(Annotation( "GOC:bf") "adenosine receptor activity, G-protein coupled") +AnnotationAssertion( "A1 adenosine receptor activity, G protein coupled") +AnnotationAssertion( "A1 adenosine receptor activity, G-protein coupled") +AnnotationAssertion( "A2A adenosine receptor activity, G protein coupled") +AnnotationAssertion( "A2A adenosine receptor activity, G-protein coupled") +AnnotationAssertion( "A2B adenosine receptor activity, G protein coupled") +AnnotationAssertion( "A2B adenosine receptor activity, G-protein coupled") +AnnotationAssertion( "A3 adenosine receptor activity, G protein coupled") +AnnotationAssertion( "A3 adenosine receptor activity, G-protein coupled") +AnnotationAssertion( "G protein coupled A1 adenosine receptor activity") +AnnotationAssertion( "G protein coupled A2A adenosine receptor activity") +AnnotationAssertion( "G protein coupled A2B adenosine receptor activity") +AnnotationAssertion( "G protein coupled A3 adenosine receptor activity") +AnnotationAssertion( "G-protein-coupled A1 adenosine receptor activity") +AnnotationAssertion( "G-protein-coupled A2A adenosine receptor activity") +AnnotationAssertion( "G-protein-coupled A2B adenosine receptor activity") +AnnotationAssertion( "G-protein-coupled A3 adenosine receptor activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0001609") +AnnotationAssertion(rdfs:label "G protein-coupled adenosine receptor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (purinergic nucleotide receptor activity) + +AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:signaling") "Combining with a purine nucleotide and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.") +AnnotationAssertion( "bf") +AnnotationAssertion( "2010-10-22T10:57:12Z") +AnnotationAssertion( "GO:0035586") +AnnotationAssertion(Annotation( "PMID:9755289") "purinoceptor") +AnnotationAssertion(Annotation( "PMID:9755289") "purinoreceptor") +AnnotationAssertion( "molecular_function") +AnnotationAssertion(Annotation( "PMID:9755289") "P2 receptor") +AnnotationAssertion( "purinergic receptor activity") +AnnotationAssertion( "GO:0001614") +AnnotationAssertion(rdfs:label "purinergic nucleotide receptor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (G protein-coupled ADP receptor activity) + +AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:signaling") Annotation( "PMID:11196645") "Combining with ADP and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.") +AnnotationAssertion( "GO:0045032") +AnnotationAssertion( "ADP receptor activity") +AnnotationAssertion( "ADP-activated nucleotide receptor activity") +AnnotationAssertion( "K101 receptor") +AnnotationAssertion(Annotation( "GOC:mah") "platelet ADP receptor activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "ADP-activated adenosine receptor activity") +AnnotationAssertion( "GO:0001621") +AnnotationAssertion(rdfs:label "G protein-coupled ADP receptor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (osteoblast differentiation) AnnotationAssertion(Annotation( "CL:0000062") Annotation( "GOC:jid") Annotation( "GO_REF:0000034") "The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.") @@ -43615,6 +45900,8 @@ AnnotationAssertion( "cell activation") SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectAllValuesFrom( )) # Class: (leukocyte homeostasis) @@ -44047,6 +46334,24 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (nucleoside binding) + +AnnotationAssertion(Annotation( "GOC:hjd") "Binding to a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0001882") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (purine nucleoside binding) + +AnnotationAssertion(Annotation( "GOC:hjd") "Binding to a purine nucleoside, a compound consisting of a purine base linked either to ribose or deoxyribose.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0001883") +AnnotationAssertion(rdfs:label "purine nucleoside binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (endothelial cell development) AnnotationAssertion(Annotation( "GOC:dph") "The progression of an endothelial cell over time, from its formation to the mature structure.") @@ -44396,6 +46701,18 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (G protein-coupled adenosine receptor signaling pathway) + +AnnotationAssertion(Annotation( "GOC:dph") "The series of molecular signals generated as a consequence of a receptor binding to extracellular adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity.") +AnnotationAssertion(Annotation( "PMID:9755289") "P1 receptor signaling pathway") +AnnotationAssertion(Annotation( "PMID:9755289") "adenosine receptor signaling pathway, G-protein coupled") +AnnotationAssertion(Annotation( "GOC:mah") "adenosine receptor signalling pathway") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "adenosine receptor signaling pathway") +AnnotationAssertion( "GO:0001973") +AnnotationAssertion(rdfs:label "G protein-coupled adenosine receptor signaling pathway") +SubClassOf( ) + # Class: (nervous system process involved in regulation of systemic arterial blood pressure) AnnotationAssertion(Annotation( "GOC:mtg_cardio") Annotation( "ISBN:0721643949") "The regulation of blood pressure mediated by detection of stimuli and a neurological response.") @@ -44615,6 +46932,25 @@ AnnotationAssertion(rdfs:label "nucl EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (adenine binding) + +AnnotationAssertion(Annotation( "GOC:hjd") "Binding to adenine, a purine base.") +AnnotationAssertion( "6-aminopurine binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0002055") +AnnotationAssertion(rdfs:label "adenine binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleobase binding) + +AnnotationAssertion(Annotation( "GOC:hjd") "Binding to a purine nucleobase, an organic nitrogenous base with a purine skeleton.") +AnnotationAssertion(Annotation( "GOC:go_curators") "purine base binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "purine binding") +AnnotationAssertion( "GO:0002060") +AnnotationAssertion(rdfs:label "purine nucleobase binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (chondrocyte differentiation) AnnotationAssertion(Annotation( "GOC:dph") "The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage.") @@ -49975,12 +52311,16 @@ EquivalentClasses( ObjectIntersection # Class: (establishment of cell polarity involved in ameboidal cell migration) AnnotationAssertion(Annotation( "GOC:ascb_2009") Annotation( "GOC:dph") Annotation( "GOC:tb") "The specification and formation of anisotropic intracellular organization that contributes to the self-propelled directed movement of an ameboid cell.") +AnnotationAssertion( ) AnnotationAssertion( "dph") AnnotationAssertion( "2009-12-08T04:50:41Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0003365") AnnotationAssertion(rdfs:label "establishment of cell polarity involved in ameboidal cell migration") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (establishment or maintenance of cytoskeleton polarity involved in ameboidal cell migration) @@ -50315,7 +52655,6 @@ EquivalentClasses( ObjectIntersection # Class: (molecular_function) AnnotationAssertion(Annotation( "GOC:pdt") "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.") -AnnotationAssertion(Annotation( "GOC:pdt") "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.") AnnotationAssertion( "GO:0005554") AnnotationAssertion( "molecular function") AnnotationAssertion( "molecular_function") @@ -50441,18 +52780,6 @@ AnnotationAssertion( "catalytic activity") SubClassOf( ) -# Class: (ATP-dependent peptidase activity) - -AnnotationAssertion(Annotation( "GOC:mah") "Catalysis of the hydrolysis of peptide bonds, driven by ATP hydrolysis.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/21612"^^xsd:anyURI) -AnnotationAssertion( "GO:0004280") -AnnotationAssertion(Annotation(rdfs:label "pPR-AP:pAP cleaves the MCP:pPR-AP:pAP Complex") "Reactome:R-HSA-9698929") -AnnotationAssertion( "molecular_function") -AnnotationAssertion(Annotation( "GOC:mah") "ATP-dependent proteolysis") -AnnotationAssertion( "GO:0004176") -AnnotationAssertion(rdfs:label "ATP-dependent peptidase activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (nuclease activity) AnnotationAssertion(Annotation( "ISBN:0198547684") "Catalysis of the hydrolysis of ester linkages within nucleic acids.") @@ -50510,7 +52837,7 @@ AnnotationAssertion( "GO:0004696") AnnotationAssertion( "GO:0004700") AnnotationAssertion( "GO:0106311") -AnnotationAssertion(Annotation( "skos:narrowMatch") "EC:2.7.11.1") +AnnotationAssertion(Annotation( "skos:exactMatch") "EC:2.7.11.1") AnnotationAssertion(Annotation(rdfs:label "PDPK1 phosphorylates AKT2") "Reactome:R-HSA-109702") AnnotationAssertion(Annotation(rdfs:label "MAPK3,(MAPK1) phosphorylates GRB2-1:SOS1:p-Y427-SHC1") "Reactome:R-HSA-109822") AnnotationAssertion(Annotation(rdfs:label "MAPK3,(MAPK1) phosphorylates GRB2-1:SOS1:p-Y-IRS1,p-Y-IRS2") "Reactome:R-HSA-109823") @@ -50993,8 +53320,6 @@ AnnotationAssertion(Annotation(rdfs:label "MAPKAPK2 phosphorylates RIPK1 at S320 AnnotationAssertion(Annotation(rdfs:label "TBK1, IKBKE phosphorylate RIPK1 at T189") "Reactome:R-HSA-9817397") AnnotationAssertion(Annotation(rdfs:label "CHUK, IKBKB phosphorylate RIPK1 at S25") "Reactome:R-HSA-9818789") AnnotationAssertion(Annotation(rdfs:label "ULK1 phosphorylates RIPK1 at S357") "Reactome:R-HSA-9819106") -AnnotationAssertion(Annotation( "EC:2.7.11.1") "protein kinase (phosphorylating) activity") -AnnotationAssertion(Annotation( "EC:2.7.11.1") "protein phosphokinase activity") AnnotationAssertion(Annotation( "EC:2.7.11.1") "protein serine kinase activity") AnnotationAssertion( "protein threonine kinase activity") AnnotationAssertion(Annotation( "EC:2.7.11.1") "protein-serine kinase activity") @@ -51396,6 +53721,11 @@ AnnotationAssertion( "GO:0004713") AnnotationAssertion(rdfs:label "protein tyrosine kinase activity") SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (transmembrane receptor protein tyrosine kinase activity) @@ -51794,6 +54124,7 @@ AnnotationAssertion(rdfs:label "L-gl EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lipid transporter activity) @@ -51827,6 +54158,31 @@ AnnotationAssertion( "GO:0005326") AnnotationAssertion(rdfs:label "neurotransmitter transmembrane transporter activity") SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectAllValuesFrom( )) + +# Class: (nucleoside transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other.") +AnnotationAssertion(Annotation(rdfs:label "Equilibrative transport (import) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 2") "Reactome:R-HSA-109527") +AnnotationAssertion(Annotation(rdfs:label "Equilibrative transport (export) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 2") "Reactome:R-HSA-109529") +AnnotationAssertion(Annotation(rdfs:label "Equilibrative transport (export) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 1") "Reactome:R-HSA-109534") +AnnotationAssertion(Annotation(rdfs:label "Equilibrative transport (import) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 1") "Reactome:R-HSA-109536") +AnnotationAssertion(Annotation(rdfs:label "Defective SLC29A3 does not transport nucleosides from lysosomal lumen to cytosol") "Reactome:R-HSA-5628807") +AnnotationAssertion(Annotation(rdfs:label "Equilibrative transport (import) of adenosine and biogenic amines by solute carrier family 29 (nucleoside transporters), member 4") "Reactome:R-HSA-727740") +AnnotationAssertion(Annotation(rdfs:label "SLC29A3 transports nucleosides from lysosomal lumen to cytosol") "Reactome:R-HSA-727749") +AnnotationAssertion(Annotation(rdfs:label "SLC29A3 transports nucleosides from cytosol to lysosomal lumen") "Reactome:R-HSA-727767") +AnnotationAssertion(Annotation(rdfs:label "Equilibrative transport (export) of adenosine and biogenic amines by solute carrier family 29 (nucleoside transporters), member 4") "Reactome:R-HSA-727768") +AnnotationAssertion(Annotation(rdfs:label "SLC29A1,2 transport 6MP from extracellular region to cytosol") "Reactome:R-HSA-9751024") +AnnotationAssertion(Annotation(rdfs:label "SLC29A3 transports RBV,RBV-TP from cytosol to mitochondrial matrix") "Reactome:R-HSA-9754929") +AnnotationAssertion(Annotation(rdfs:label "SLC29A1 transports RBV from extracellular region to cytosol") "Reactome:R-HSA-9755015") +AnnotationAssertion(Annotation(rdfs:label "SLC29A1 transports RBV from cytosol to extracellular region") "Reactome:R-HSA-9755035") +AnnotationAssertion( "intracellular nucleoside transmembrane transporter activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0005337") +AnnotationAssertion(rdfs:label "nucleoside transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) # Class: (organic acid transmembrane transporter activity) @@ -51837,6 +54193,36 @@ AnnotationAssertion(rdfs:label "orga EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (purine nucleobase transmembrane transporter activity) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "Enables the transfer of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from one side of a membrane to the other.") +AnnotationAssertion(Annotation( "GOC:go_curators") "purine base transmembrane transporter activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "purine transmembrane transporter activity") +AnnotationAssertion( "GO:0005345") +AnnotationAssertion(rdfs:label "purine nucleobase transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (purine ribonucleotide transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, from one side of a membrane to the other.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0005346") +AnnotationAssertion(rdfs:label "purine ribonucleotide transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ATP transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other.") +AnnotationAssertion( "GO:0005348") +AnnotationAssertion(Annotation(rdfs:label "CALHM1:CALHM3 transports ATP from the cytosol to the extracellular region") "Reactome:R-HSA-9717392") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0005347") +AnnotationAssertion(rdfs:label "ATP transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (glucose transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:mtg_transport") Annotation( "ISBN:0815340729") "Enables the transfer of the hexose monosaccharide glucose from one side of a membrane to the other.") @@ -51971,6 +54357,17 @@ AnnotationAssertion( "collagen binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (ATP binding) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.") +AnnotationAssertion(Annotation(rdfs:label "KCNJ11 tetramer:ABCC8 tetramer binds 4xATP, closing the channel") "Reactome:R-HSA-265682") +AnnotationAssertion( "Mg-ATP binding") +AnnotationAssertion( "MgATP binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0005524") +AnnotationAssertion(rdfs:label "ATP binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (glucose binding) AnnotationAssertion(Annotation( "GOC:jl") "Binding to D- or L-enantiomers of glucose.") @@ -52877,6 +55274,15 @@ AnnotationAssertion( "glucose catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (D-ribose metabolic process) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving D-ribose (ribo-pentose). As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12.") +AnnotationAssertion( "D-ribose metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006014") +AnnotationAssertion(rdfs:label "D-ribose metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (aminoglycan metabolic process) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages.") @@ -53138,6 +55544,131 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) +# Class: (regulation of nucleotide metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleotides.") +AnnotationAssertion( "regulation of nucleotide metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006140") +AnnotationAssertion(rdfs:label "regulation of nucleotide metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (regulation of purine nucleobase metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving purines.") +AnnotationAssertion(Annotation( "GOC:go_curators") "regulation of purine base metabolic process") +AnnotationAssertion( "regulation of purine base metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006141") +AnnotationAssertion(rdfs:label "regulation of purine nucleobase metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleobase metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.") +AnnotationAssertion(Annotation( "GOC:go_curators") "purine base metabolic process") +AnnotationAssertion( "purine base metabolism") +AnnotationAssertion( "purine metabolic process") +AnnotationAssertion( "purine metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006144") +AnnotationAssertion(rdfs:label "purine nucleobase metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleobase catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.") +AnnotationAssertion( "purine base breakdown") +AnnotationAssertion(Annotation( "GOC:go_curators") "purine base catabolic process") +AnnotationAssertion( "purine base catabolism") +AnnotationAssertion( "purine base degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006145") +AnnotationAssertion(rdfs:label "purine nucleobase catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (adenine catabolic process) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of adenine, 6-aminopurine, one of the 5 main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine.") +AnnotationAssertion( "adenine breakdown") +AnnotationAssertion( "adenine catabolism") +AnnotationAssertion( "adenine degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006146") +AnnotationAssertion(rdfs:label "adenine catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleoside catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the breakdown of purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).") +AnnotationAssertion( "purine nucleoside breakdown") +AnnotationAssertion( "purine nucleoside catabolism") +AnnotationAssertion( "purine nucleoside degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006152") +AnnotationAssertion(rdfs:label "purine nucleoside catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (adenosine catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the breakdown of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.") +AnnotationAssertion( "GO:0006156") +AnnotationAssertion( "adenosine breakdown") +AnnotationAssertion( "adenosine catabolism") +AnnotationAssertion( "adenosine degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "adenosine phosphorolysis") +AnnotationAssertion( "GO:0006154") +AnnotationAssertion(rdfs:label "adenosine catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleotide metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.") +AnnotationAssertion( "purine nucleotide metabolism") +AnnotationAssertion( "purine metabolic process") +AnnotationAssertion( "purine metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006163") +AnnotationAssertion(rdfs:label "purine nucleotide metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleotide biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.") +AnnotationAssertion( "MetaCyc:DENOVOPURINE2-PWY") +AnnotationAssertion( "purine nucleotide anabolism") +AnnotationAssertion( "purine nucleotide biosynthesis") +AnnotationAssertion( "purine nucleotide formation") +AnnotationAssertion( "purine nucleotide synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006164") +AnnotationAssertion(rdfs:label "purine nucleotide biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ADP biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the formation of ADP, adenosine 5'-diphosphate.") +AnnotationAssertion( "ADP anabolism") +AnnotationAssertion( "ADP biosynthesis") +AnnotationAssertion( "ADP formation") +AnnotationAssertion( "ADP synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006172") +AnnotationAssertion(rdfs:label "ADP biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleotide catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.") +AnnotationAssertion( "purine nucleotide breakdown") +AnnotationAssertion( "purine nucleotide catabolism") +AnnotationAssertion( "purine nucleotide degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006195") +AnnotationAssertion(rdfs:label "purine nucleotide catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (DNA metabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.") @@ -53379,8 +55910,8 @@ AnnotationAssertion(Annotation( "GOC:bf") "protein amino acid phosphorylation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006468") +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "protein phosphorylation") SubClassOf( ) SubClassOf( ) @@ -53394,7 +55925,7 @@ AnnotationAssertion( "inhibition of protein kinase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006469") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of protein kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -53992,6 +56523,31 @@ AnnotationAssertion(rdfs:label "cell EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (nucleoside phosphate metabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "The chemical reactions and pathways involving any phosphorylated nucleoside.") +AnnotationAssertion( "nucleoside phosphate metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006753") +AnnotationAssertion(rdfs:label "nucleoside phosphate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (ATP biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.") +AnnotationAssertion( "GO:0006758") +AnnotationAssertion( "GO:0006759") +AnnotationAssertion( "ATP anabolism") +AnnotationAssertion( "ATP biosynthesis") +AnnotationAssertion( "ATP formation") +AnnotationAssertion( "ATP synthesis") +AnnotationAssertion( "ATP regeneration") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006754") +AnnotationAssertion(rdfs:label "ATP biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (porphyrin-containing compound metabolic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0198506732") Annotation( "Wikipedia:Porphyrin#Natural_formation") "The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.") @@ -54259,6 +56815,27 @@ AnnotationAssertion( "extracellular amino acid transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (nucleotide transport) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "The directed movement of a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate, into, out of or within a cell.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006862") +AnnotationAssertion(rdfs:label "nucleotide transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleobase transport) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "The directed movement of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "GO:0015852") +AnnotationAssertion(Annotation( "GOC:mah") "purine base transmembrane transport") +AnnotationAssertion(Annotation( "GOC:go_curators") "purine base transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:mah") "purine transmembrane transport") +AnnotationAssertion( "purine transport") +AnnotationAssertion( "GO:0006863") +AnnotationAssertion(rdfs:label "purine nucleobase transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (amino acid transport) AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") @@ -55501,6 +58078,7 @@ DisjointClasses( ObjectSomeValuesFrom AnnotationAssertion(Annotation( "GOC:go_curators") "The process whose specific outcome is the progression of an immature germ cell over time, from its formation to the mature structure (gamete). A germ cell is any reproductive cell in a multicellular organism.") AnnotationAssertion( "germ-cell development") +AnnotationAssertion( "gametogenesis") AnnotationAssertion( "primordial germ cell development") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0007281") @@ -56901,7 +59479,6 @@ SubClassOf( (biological_process) AnnotationAssertion(Annotation( "GOC:pdt") "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.") -AnnotationAssertion(Annotation( "GOC:pdt") "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24968"^^xsd:anyURI) AnnotationAssertion( "jl") AnnotationAssertion( "2012-09-19T15:05:24Z") @@ -57091,59 +59668,6 @@ AnnotationAssertion( "G protein-coupled amine receptor activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (peptidase activity) - -AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0815332181") "Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.") -AnnotationAssertion( "GO:0070010") -AnnotationAssertion( "GO:0070011") -AnnotationAssertion( "EC:3.4.-.-") -AnnotationAssertion(Annotation(rdfs:label "gamma-secretase cleaves p75NTR, releasing NRIF and TRAF6") "Reactome:R-HSA-205112") -AnnotationAssertion(Annotation(rdfs:label "Unknown lysosomal protease degrades CBLIF:RCbl to release Cbl") "Reactome:R-HSA-3000243") -AnnotationAssertion(Annotation(rdfs:label "TCN2:RCbl is degraded to release RCbl") "Reactome:R-HSA-3000263") -AnnotationAssertion(Annotation(rdfs:label "An unknown protease degrades ACACA") "Reactome:R-HSA-3065958") -AnnotationAssertion(Annotation(rdfs:label "An unknown protease degrades hCBXs") "Reactome:R-HSA-3065959") -AnnotationAssertion(Annotation(rdfs:label "Maturation of HIV Virion") "Reactome:R-HSA-3139027") -AnnotationAssertion(Annotation(rdfs:label "Proteolytic processing of SLIT") "Reactome:R-HSA-376149") -AnnotationAssertion(Annotation(rdfs:label "An unknown protease degrades ACACB") "Reactome:R-HSA-4167501") -AnnotationAssertion(Annotation(rdfs:label "CTSG cleaves CASP1(1-404)") "Reactome:R-HSA-448678") -AnnotationAssertion(Annotation(rdfs:label "USP1 autocleavage") "Reactome:R-HSA-5655483") -AnnotationAssertion(Annotation(rdfs:label "NAPSA, CTSH, PGA3-5 cleave pro-SFTPB") "Reactome:R-HSA-5684864") -AnnotationAssertion(Annotation(rdfs:label "NAPSA, CTSH, PGA3-5 cleave pro-SFTPC") "Reactome:R-HSA-5685902") -AnnotationAssertion(Annotation(rdfs:label "DCD(63-110) is processed to DCD(63-109)") "Reactome:R-HSA-6803060") -AnnotationAssertion( "hydrolase, acting on peptide bonds") -AnnotationAssertion( "peptide hydrolase activity") -AnnotationAssertion( "protease activity") -AnnotationAssertion( "peptidase activity, acting on D-amino acid peptides") -AnnotationAssertion( "peptidase activity, acting on L-amino acid peptides") -AnnotationAssertion( "proteinase activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0008233") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "peptidase activity") -SubClassOf( ) -SubClassOf( ) - -# Class: (cysteine-type peptidase activity) - -AnnotationAssertion(Annotation( "GOC:mah") Annotation( "https://www.ebi.ac.uk/merops/about/glossary.shtml#CATTYPE") "Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.") -AnnotationAssertion( "GO:0004220") -AnnotationAssertion(Annotation(rdfs:label "Cathepsin Z (Cathepsin X) hydrolyzes Angiotensin-(1-10) to Angiotensin-(1-8)") "Reactome:R-HSA-2022381") -AnnotationAssertion(Annotation(rdfs:label "Autocleavage of ESPL1 (Separase)") "Reactome:R-HSA-2467775") -AnnotationAssertion(Annotation(rdfs:label "ESPL1 (Separase) cleaves centromeric cohesin") "Reactome:R-HSA-2467809") -AnnotationAssertion(Annotation(rdfs:label "USP9X deubiquitinates Ub-SNCA") "Reactome:R-HSA-5660752") -AnnotationAssertion(Annotation(rdfs:label "CASP8 cleaves N4BP1 at D424, D490") "Reactome:R-HSA-9757951") -AnnotationAssertion( "cysteine protease activity") -AnnotationAssertion( "thiol protease activity") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0008234") -AnnotationAssertion(rdfs:label "cysteine-type peptidase activity") -SubClassOf( ) - # Class: (sulfate transport) AnnotationAssertion(Annotation( "GOC:krc") "The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") @@ -57871,6 +60395,395 @@ AnnotationAssertion(rdfs:label "nucl EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (purine nucleobase biosynthetic process) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.") +AnnotationAssertion( "MetaCyc:PWY-841") +AnnotationAssertion( "purine base anabolism") +AnnotationAssertion( "purine base biosynthesis") +AnnotationAssertion(Annotation( "GOC:go_curators") "purine base biosynthetic process") +AnnotationAssertion( "purine base formation") +AnnotationAssertion( "purine base synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009113") +AnnotationAssertion(rdfs:label "purine nucleobase biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside metabolic process) + +AnnotationAssertion(Annotation( "GOC:ma") "The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).") +AnnotationAssertion( "nucleoside metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009116") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleoside metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (nucleotide metabolic process) + +AnnotationAssertion(Annotation( "GOC:ma") "The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).") +AnnotationAssertion( "nucleotide metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009117") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleotide metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (regulation of nucleoside metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleosides.") +AnnotationAssertion( "regulation of nucleoside metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009118") +AnnotationAssertion(rdfs:label "regulation of nucleoside metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleoside metabolic process) + +AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.") +AnnotationAssertion( "ribonucleoside metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009119") +AnnotationAssertion(rdfs:label "ribonucleoside metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside diphosphate metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "nucleoside diphosphate metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009132") +AnnotationAssertion(rdfs:label "nucleoside diphosphate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside diphosphate biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "nucleoside diphosphate anabolism") +AnnotationAssertion( "nucleoside diphosphate biosynthesis") +AnnotationAssertion( "nucleoside diphosphate formation") +AnnotationAssertion( "nucleoside diphosphate synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009133") +AnnotationAssertion(rdfs:label "nucleoside diphosphate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside diphosphate catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "nucleoside diphosphate breakdown") +AnnotationAssertion( "nucleoside diphosphate catabolism") +AnnotationAssertion( "nucleoside diphosphate degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009134") +AnnotationAssertion(rdfs:label "nucleoside diphosphate catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleoside diphosphate metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "purine nucleoside diphosphate metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009135") +AnnotationAssertion(rdfs:label "purine nucleoside diphosphate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleoside diphosphate biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "purine nucleoside diphosphate anabolism") +AnnotationAssertion( "purine nucleoside diphosphate biosynthesis") +AnnotationAssertion( "purine nucleoside diphosphate formation") +AnnotationAssertion( "purine nucleoside diphosphate synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009136") +AnnotationAssertion(rdfs:label "purine nucleoside diphosphate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleoside diphosphate catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "purine nucleoside diphosphate breakdown") +AnnotationAssertion( "purine nucleoside diphosphate catabolism") +AnnotationAssertion( "purine nucleoside diphosphate degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009137") +AnnotationAssertion(rdfs:label "purine nucleoside diphosphate catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside triphosphate metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "nucleoside triphosphate metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009141") +AnnotationAssertion(rdfs:label "nucleoside triphosphate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside triphosphate biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "nucleoside triphosphate anabolism") +AnnotationAssertion( "nucleoside triphosphate biosynthesis") +AnnotationAssertion( "nucleoside triphosphate formation") +AnnotationAssertion( "nucleoside triphosphate synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009142") +AnnotationAssertion(rdfs:label "nucleoside triphosphate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside triphosphate catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "nucleoside triphosphate breakdown") +AnnotationAssertion( "nucleoside triphosphate catabolism") +AnnotationAssertion( "nucleoside triphosphate degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009143") +AnnotationAssertion(rdfs:label "nucleoside triphosphate catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleoside triphosphate metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "purine nucleoside triphosphate metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009144") +AnnotationAssertion(rdfs:label "purine nucleoside triphosphate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleoside triphosphate biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "purine nucleoside triphosphate anabolism") +AnnotationAssertion( "purine nucleoside triphosphate biosynthesis") +AnnotationAssertion( "purine nucleoside triphosphate formation") +AnnotationAssertion( "purine nucleoside triphosphate synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009145") +AnnotationAssertion(rdfs:label "purine nucleoside triphosphate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleoside triphosphate catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "purine nucleoside triphosphate breakdown") +AnnotationAssertion( "purine nucleoside triphosphate catabolism") +AnnotationAssertion( "purine nucleoside triphosphate degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009146") +AnnotationAssertion(rdfs:label "purine nucleoside triphosphate catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleotide metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.") +AnnotationAssertion( "purine ribonucleotide metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009150") +AnnotationAssertion(rdfs:label "purine ribonucleotide metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleotide biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.") +AnnotationAssertion( "purine ribonucleotide anabolism") +AnnotationAssertion( "purine ribonucleotide biosynthesis") +AnnotationAssertion( "purine ribonucleotide formation") +AnnotationAssertion( "purine ribonucleotide synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009152") +AnnotationAssertion(rdfs:label "purine ribonucleotide biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleotide catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.") +AnnotationAssertion( "purine ribonucleotide breakdown") +AnnotationAssertion( "purine ribonucleotide catabolism") +AnnotationAssertion( "purine ribonucleotide degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009154") +AnnotationAssertion(rdfs:label "purine ribonucleotide catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0140512713") "The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).") +AnnotationAssertion( "nucleoside anabolism") +AnnotationAssertion( "nucleoside biosynthesis") +AnnotationAssertion( "nucleoside formation") +AnnotationAssertion( "nucleoside synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009163") +AnnotationAssertion(rdfs:label "nucleoside biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (nucleoside catabolic process) + +AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).") +AnnotationAssertion( "nucleoside breakdown") +AnnotationAssertion( "nucleoside catabolism") +AnnotationAssertion( "nucleoside degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009164") +AnnotationAssertion(rdfs:label "nucleoside catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (nucleotide biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).") +AnnotationAssertion( "nucleotide anabolism") +AnnotationAssertion( "nucleotide biosynthesis") +AnnotationAssertion( "nucleotide formation") +AnnotationAssertion( "nucleotide synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009165") +AnnotationAssertion(rdfs:label "nucleotide biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleotide catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).") +AnnotationAssertion( "nucleotide breakdown") +AnnotationAssertion( "nucleotide catabolism") +AnnotationAssertion( "nucleotide degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009166") +AnnotationAssertion(rdfs:label "nucleotide catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleoside diphosphate metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "purine ribonucleoside diphosphate metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009179") +AnnotationAssertion(rdfs:label "purine ribonucleoside diphosphate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleoside diphosphate biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "purine ribonucleoside diphosphate anabolism") +AnnotationAssertion( "purine ribonucleoside diphosphate biosynthesis") +AnnotationAssertion( "purine ribonucleoside diphosphate formation") +AnnotationAssertion( "purine ribonucleoside diphosphate synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009180") +AnnotationAssertion(rdfs:label "purine ribonucleoside diphosphate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleoside diphosphate catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "purine ribonucleoside diphosphate breakdown") +AnnotationAssertion( "purine ribonucleoside diphosphate catabolism") +AnnotationAssertion( "purine ribonucleoside diphosphate degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009181") +AnnotationAssertion(rdfs:label "purine ribonucleoside diphosphate catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleoside diphosphate metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "ribonucleoside diphosphate metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009185") +AnnotationAssertion(rdfs:label "ribonucleoside diphosphate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleoside diphosphate biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "ribonucleoside diphosphate anabolism") +AnnotationAssertion( "ribonucleoside diphosphate biosynthesis") +AnnotationAssertion( "ribonucleoside diphosphate formation") +AnnotationAssertion( "ribonucleoside diphosphate synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009188") +AnnotationAssertion(rdfs:label "ribonucleoside diphosphate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleoside diphosphate catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.") +AnnotationAssertion( "ribonucleoside diphosphate breakdown") +AnnotationAssertion( "ribonucleoside diphosphate catabolism") +AnnotationAssertion( "ribonucleoside diphosphate degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009191") +AnnotationAssertion(rdfs:label "ribonucleoside diphosphate catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleoside triphosphate metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "ribonucleoside triphosphate metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009199") +AnnotationAssertion(rdfs:label "ribonucleoside triphosphate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleoside triphosphate biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "ribonucleoside triphosphate anabolism") +AnnotationAssertion( "ribonucleoside triphosphate biosynthesis") +AnnotationAssertion( "ribonucleoside triphosphate formation") +AnnotationAssertion( "ribonucleoside triphosphate synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009201") +AnnotationAssertion(rdfs:label "ribonucleoside triphosphate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleoside triphosphate catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "ribonucleoside triphosphate breakdown") +AnnotationAssertion( "ribonucleoside triphosphate catabolism") +AnnotationAssertion( "ribonucleoside triphosphate degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009203") +AnnotationAssertion(rdfs:label "ribonucleoside triphosphate catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleoside triphosphate metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "purine ribonucleoside triphosphate metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009205") +AnnotationAssertion(rdfs:label "purine ribonucleoside triphosphate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleoside triphosphate biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "purine ribonucleoside triphosphate anabolism") +AnnotationAssertion( "purine ribonucleoside triphosphate biosynthesis") +AnnotationAssertion( "purine ribonucleoside triphosphate formation") +AnnotationAssertion( "purine ribonucleoside triphosphate synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009206") +AnnotationAssertion(rdfs:label "purine ribonucleoside triphosphate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleoside triphosphate catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "purine ribonucleoside triphosphate breakdown") +AnnotationAssertion( "purine ribonucleoside triphosphate catabolism") +AnnotationAssertion( "purine ribonucleoside triphosphate degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009207") +AnnotationAssertion(rdfs:label "purine ribonucleoside triphosphate catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (glycolipid biosynthetic process) AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide).") @@ -57910,6 +60823,39 @@ AnnotationAssertion( "glucan catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (ribonucleotide metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.") +AnnotationAssertion( "GO:0009121") +AnnotationAssertion( "ribonucleotide metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009259") +AnnotationAssertion(rdfs:label "ribonucleotide metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleotide biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.") +AnnotationAssertion( "ribonucleotide anabolism") +AnnotationAssertion( "ribonucleotide biosynthesis") +AnnotationAssertion( "ribonucleotide formation") +AnnotationAssertion( "ribonucleotide synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009260") +AnnotationAssertion(rdfs:label "ribonucleotide biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleotide catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.") +AnnotationAssertion( "ribonucleotide breakdown") +AnnotationAssertion( "ribonucleotide catabolism") +AnnotationAssertion( "ribonucleotide degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0009261") +AnnotationAssertion(rdfs:label "ribonucleotide catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (response to temperature stimulus) AnnotationAssertion(Annotation( "GOC:hb") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.") @@ -59039,16 +61985,6 @@ AnnotationAssertion(rdfs:label "regu EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (negative regulation of peptidase activity) - -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0010466") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "negative regulation of peptidase activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) - # Class: (gene expression) AnnotationAssertion(Annotation( "GOC:txnOH-2018") Annotation( "PMID:25934543") Annotation( "PMID:31580950") "The process in which a gene's sequence is converted into a mature gene product (protein or RNA). This includes the production of an RNA transcript and its processing, translation and maturation for protein-coding genes.") @@ -59081,7 +62017,7 @@ AnnotationAssertion( "regulation of signalling receptor activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0010469") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of signaling receptor activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -60177,18 +63113,6 @@ AnnotationAssertion(rdfs:label "nega EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -# Class: (positive regulation of peptidase activity) - -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "Any process that increases the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins.") -AnnotationAssertion( "tb") -AnnotationAssertion( "2009-04-27T11:54:32Z") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0010952") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "positive regulation of peptidase activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) - # Class: (positive regulation of protein processing) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:mah") Annotation( "GOC:tb") "Any process that increases the rate, frequency or extent of protein maturation by peptide bond cleavage.") @@ -60858,6 +63782,15 @@ AnnotationAssertion( "response to organic cyclic compound") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (response to purine-containing compound) + +AnnotationAssertion(Annotation( "GOC:ef") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine-containing compound stimulus.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "response to purine") +AnnotationAssertion( "GO:0014074") +AnnotationAssertion(rdfs:label "response to purine-containing compound") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (response to amine) AnnotationAssertion(Annotation( "GOC:ef") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amine stimulus. An amine is a compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups.") @@ -61407,6 +64340,7 @@ AnnotationAssertion( "sodium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (calcium ion transmembrane transporter activity) @@ -61418,6 +64352,7 @@ AnnotationAssertion( "calcium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (organic cation transmembrane transporter activity) @@ -61457,6 +64392,7 @@ AnnotationAssertion( "bicarbonate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (phosphate ion transmembrane transporter activity) @@ -61471,6 +64407,7 @@ AnnotationAssertion( "phosphate ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sulfate transmembrane transporter activity) @@ -61486,6 +64423,7 @@ AnnotationAssertion( "sulfate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (acetate transmembrane transporter activity) @@ -61545,6 +64483,15 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (pentose transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:mtg_transport") Annotation( "ISBN:0815340729") "Enables the transfer of a pentose sugar from one side of a membrane to the other. Pentose is a monosaccharide with 5 carbon atoms.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0015146") +AnnotationAssertion(rdfs:label "pentose transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (hexose transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:mtg_transport") Annotation( "ISBN:0815340729") "Enables the transfer of a hexose sugar, a monosaccharide with 6 carbon atoms, from one side of a membrane to the other.") @@ -61672,6 +64619,57 @@ AnnotationAssertion(rdfs:label "nucl EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (adenine transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:go_curators") "Enables the transfer of adenine, 6-aminopurine, from one side of a membrane to the other.") +AnnotationAssertion( "RHEA:34999") +AnnotationAssertion(Annotation(rdfs:label "SLC25A5,6 dimers exchange ATP for ADP across the mitochondrial inner membrane") "Reactome:R-HSA-163215") +AnnotationAssertion(Annotation(rdfs:label "ARL2:GTP:ARL2BP:SLC25A4 dimer exchanges ATP for ADP across the mitochondrial inner membrane") "Reactome:R-HSA-5672027") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0015207") +AnnotationAssertion(rdfs:label "adenine transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (purine nucleoside transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of a purine nucleoside, a purine base covalently bonded to a ribose or deoxyribose sugar, from one side of a membrane to the other.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0015211") +AnnotationAssertion(rdfs:label "purine nucleoside transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) + +# Class: (nucleotide transmembrane transporter activity) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "Enables the transfer of a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate, from one side of a membrane to the other.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0015215") +AnnotationAssertion(rdfs:label "nucleotide transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) + +# Class: (purine nucleotide transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of a purine nucleotide, any compound consisting of a purine nucleoside esterified with (ortho)phosphate, from one side of a membrane to the other.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0015216") +AnnotationAssertion(rdfs:label "purine nucleotide transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (ADP transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of ADP, adenosine diphosphate, from one side of a membrane to the other.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0015217") +AnnotationAssertion(rdfs:label "ADP transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (choline transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of choline from one side of a membrane to the other. Choline (2-hydroxyethyltrimethylammonium) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine.") @@ -61741,6 +64739,7 @@ AnnotationAssertion( "formate transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (alkane transmembrane transporter activity) @@ -61751,6 +64750,15 @@ AnnotationAssertion(rdfs:label "alka EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "GO_REF:0000090") ObjectSomeValuesFrom( )) +# Class: (D-ribose transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:mtg_transport") Annotation( "ISBN:0198506732") Annotation( "ISBN:0815340729") "Enables the transfer of D-ribose from one side of a membrane to the other. As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0015591") +AnnotationAssertion(rdfs:label "D-ribose transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (organophosphate ester transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:mcc") "Enables the transfer of organophosphate esters from one side of a membrane to the other. Organophosphate esters are small organic molecules containing phosphate ester bonds.") @@ -61945,6 +64953,24 @@ AnnotationAssertion( "monosaccharide transmembrane transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +# Class: (pentose transmembrane transport) + +AnnotationAssertion(Annotation( "GOC:ai") "The process in which pentose is transported across a lipid bilayer, from one side of a membrane to the other. A pentose is any aldose with a chain of five carbon atoms in the molecule.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "pentose transport") +AnnotationAssertion( "GO:0015750") +AnnotationAssertion(rdfs:label "pentose transmembrane transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + +# Class: (D-ribose transmembrane transport) + +AnnotationAssertion(Annotation( "GOC:ai") "The process in which D-ribose is transported across a lipid bilayer, from one side of a membrane to the other. As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "D-ribose transport") +AnnotationAssertion( "GO:0015752") +AnnotationAssertion(rdfs:label "D-ribose transmembrane transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (polysaccharide transport) AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of polysaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A polysaccharide is a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.") @@ -62057,6 +65083,75 @@ AnnotationAssertion(rdfs:label "nucl EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (adenine transport) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198506732") "The directed movement of adenine, 6-aminopurine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion(Annotation( "GOC:mah") "adenine transmembrane transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0015853") +AnnotationAssertion(rdfs:label "adenine transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside transport) + +AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0015858") +AnnotationAssertion(rdfs:label "nucleoside transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (intracellular nucleoside transport) + +AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), within a cell.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0015859") +AnnotationAssertion(rdfs:label "intracellular nucleoside transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine nucleoside transmembrane transport) + +AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:vw") "The process in which a purine nucleoside is transported across a membrane. A purine nucleoside is a purine base covalently bonded to a ribose or deoxyribose sugar.") +AnnotationAssertion( "GO:0035427") +AnnotationAssertion(Annotation( "GOC:vw") "purine nucleoside transport") +AnnotationAssertion( "purine nucleoside membrane transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0015860") +AnnotationAssertion(rdfs:comment "Note that this term is not intended for use in annotating lateral movement within membranes.") +AnnotationAssertion(rdfs:label "purine nucleoside transmembrane transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + +# Class: (purine nucleotide transport) + +AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of a purine nucleotide, any compound consisting of a purine nucleoside esterified with (ortho)phosphate, into, out of or within a cell.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0015865") +AnnotationAssertion(rdfs:label "purine nucleotide transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ADP transport) + +AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0015866") +AnnotationAssertion(rdfs:label "ADP transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ATP transport) + +AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0015867") +AnnotationAssertion(rdfs:label "ATP transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleotide transport) + +AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, into, out of or within a cell.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0015868") +AnnotationAssertion(rdfs:label "purine ribonucleotide transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (protein-DNA complex transport) AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of protein-DNA complexes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") @@ -62616,6 +65711,7 @@ EquivalentClasses( ObjectIntersection # Class: (vesicle-mediated transport) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:mah") Annotation( "ISBN:08789310662000") "A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/25421"^^xsd:anyURI) AnnotationAssertion( "GO:0006899") AnnotationAssertion( "vesicle transport") AnnotationAssertion(Annotation( "GOC:mah") "vesicular transport") @@ -62632,6 +65728,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vesicle-mediated transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) # Class: (regulation of striated muscle tissue development) @@ -62820,11 +65917,15 @@ SubClassOf( "GOC:cjm") Annotation( "GOC:dph") Annotation( "GOC:ems") Annotation( "GOC:pf") Annotation( "Wikipedia:Cell_migration") "The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24787"^^xsd:anyURI) +AnnotationAssertion( ) AnnotationAssertion( "Wikipedia:Cell_migration") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0016477") AnnotationAssertion(rdfs:label "cell migration") SubClassOf( ) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (protein processing) @@ -62859,6 +65960,16 @@ AnnotationAssertion( "protein-hormone receptor activity") SubClassOf( ) +# Class: (nucleotide receptor activity) + +AnnotationAssertion(Annotation( "GOC:signaling") Annotation( "ISBN:0198506732") "Combining with a nucleotide and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. A nucleotide is a compound that consists of a nucleoside esterified with a phosphate molecule.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0016502") +AnnotationAssertion(rdfs:label "nucleotide receptor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (negative regulation of angiogenesis) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of angiogenesis.") @@ -62957,7 +66068,6 @@ AnnotationAssertion( "GO:0016755") AnnotationAssertion(rdfs:label "aminoacyltransferase activity") SubClassOf( ) -SubClassOf( ) # Class: (transferase activity, transferring phosphorus-containing groups) @@ -63117,6 +66227,11 @@ AnnotationAssertion(rdfs:comment "No AnnotationAssertion(rdfs:label "ATP hydrolysis activity") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (G protein-coupled acetylcholine receptor activity) @@ -63162,6 +66277,14 @@ AnnotationAssertion(rdfs:label "pept EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (purine nucleotide binding) + +AnnotationAssertion(Annotation( "GOC:ai") "Binding to a purine nucleotide, a compound consisting of a purine nucleoside esterified with (ortho)phosphate.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0017076") +AnnotationAssertion(rdfs:label "purine nucleotide binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (response to insecticide) AnnotationAssertion(Annotation( "GOC:curators") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insecticide stimulus. Insecticides are chemicals used to kill insects.") @@ -63201,6 +66324,11 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ribonucleoside triphosphate phosphatase activity") SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (nucleologenesis) @@ -63263,7 +66391,7 @@ AnnotationAssertion(Annotation( "RESID:AA0039") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0018108") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peptidyl-tyrosine phosphorylation") SubClassOf( ) SubClassOf( ) @@ -63302,8 +66430,8 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:mah") "The alteration of an amino acid residue in a peptide.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0018193") +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peptidyl-amino acid modification") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -63313,7 +66441,7 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:go_curators") "The modification of peptidyl-tyrosine.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0018212") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peptidyl-tyrosine modification") SubClassOf( ) @@ -63512,6 +66640,30 @@ AnnotationAssertion( "response to pheromone") SubClassOf( ) +# Class: (D-ribose biosynthetic process) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of D-ribose, (ribo-pentose).") +AnnotationAssertion( "D-ribose anabolism") +AnnotationAssertion( "D-ribose biosynthesis") +AnnotationAssertion( "D-ribose formation") +AnnotationAssertion( "D-ribose synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0019302") +AnnotationAssertion(rdfs:label "D-ribose biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (D-ribose catabolic process) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of D-ribose (ribo-pentose).") +AnnotationAssertion( "MetaCyc:RIBOKIN-PWY") +AnnotationAssertion( "D-ribose breakdown") +AnnotationAssertion( "D-ribose catabolism") +AnnotationAssertion( "D-ribose degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0019303") +AnnotationAssertion(rdfs:label "D-ribose catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (hexose metabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule.") @@ -63544,6 +66696,38 @@ AnnotationAssertion( "hexose catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (pentose metabolic process) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.") +AnnotationAssertion( "pentose metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0019321") +AnnotationAssertion(rdfs:label "pentose metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (pentose biosynthetic process) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.") +AnnotationAssertion( "pentose anabolism") +AnnotationAssertion( "pentose biosynthesis") +AnnotationAssertion( "pentose formation") +AnnotationAssertion( "pentose synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0019322") +AnnotationAssertion(rdfs:label "pentose biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (pentose catabolic process) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.") +AnnotationAssertion( "pentose breakdown") +AnnotationAssertion( "pentose catabolism") +AnnotationAssertion( "pentose degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0019323") +AnnotationAssertion(rdfs:label "pentose catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (phenol-containing compound catabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring.") @@ -63725,6 +66909,24 @@ AnnotationAssertion( "organophosphate metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (anaerobic purine nucleobase catabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "The anaerobic chemical reactions and pathways resulting in the breakdown of purine nucleobases, yielding energy in the form of ATP.") +AnnotationAssertion( "MetaCyc:P164-PWY") +AnnotationAssertion( "MetaCyc:PWY-5044") +AnnotationAssertion( "MetaCyc:PWY-5497") +AnnotationAssertion(Annotation( "GOC:go_curators") "anaerobic purine base catabolic process") +AnnotationAssertion( "anaerobic purine base catabolism") +AnnotationAssertion( "purine base fermentation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "anaerobic purine catabolic process") +AnnotationAssertion( "purine fermentation") +AnnotationAssertion( "GO:0019653") +AnnotationAssertion(rdfs:label "anaerobic purine nucleobase catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) + # Class: (acetate fermentation) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "MetaCyc:P142-PWY") "The anaerobic chemical reactions and pathways resulting in the breakdown of acetate, yielding energy in the form of ATP.") @@ -63749,6 +66951,15 @@ AnnotationAssertion( "nitrogenous compound fermentation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (ribose phosphate metabolic process) + +AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways involving ribose phosphate, any phosphorylated ribose sugar.") +AnnotationAssertion( "ribose phosphate metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0019693") +AnnotationAssertion(rdfs:label "ribose phosphate metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (choline metabolic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0192801023") "The chemical reactions and pathways involving choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine.") @@ -63846,7 +67057,7 @@ SubClassOf( (Atg12 transferase activity) -AnnotationAssertion(Annotation( "GOC:mah") Annotation( "PMID:12826404") "Catalysis of the transfer of ATG12 from one protein to another via the reaction X-ATG12 + Y --> Y-ATG12 + X, where both X-ATG12 and Y-ATG12 are covalent linkages.") +AnnotationAssertion(Annotation( "GOC:mah") Annotation( "PMID:12826404") "Catalysis of the transfer of ATG12 from one protein to another via the reaction X-ATG12 + Y = Y-ATG12 + X, where both X-ATG12 and Y-ATG12 are covalent linkages.") AnnotationAssertion(Annotation(rdfs:label "ATG10 transfers ATG12 from ATG7 to ATG10") "Reactome:R-HSA-5681999") AnnotationAssertion( "APG12 conjugating enzyme activity") AnnotationAssertion( "APG12 ligase activity") @@ -63866,48 +67077,29 @@ AnnotationAssertion( "Atg12 activating enzyme activity") SubClassOf( ) -# Class: (ubiquitin-like protein peptidase activity) - -AnnotationAssertion(Annotation( "PMID:19489724") "An isopeptidase activity that cleaves ubiquitin or ubiquitin-like proteins (ULP; e.g. ATG8, ISG15, NEDD8, SUMO) from target proteins.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/17398"^^xsd:anyURI) -AnnotationAssertion( "GO:0070138") -AnnotationAssertion( "GO:0140491") -AnnotationAssertion( "GO:1904454") -AnnotationAssertion( "GO:1904455") -AnnotationAssertion(Annotation( "GOC:dph") "small conjugating protein-specific isopeptidase activity") -AnnotationAssertion(Annotation( "GOC:dph") "small conjugating protein-specific protease activity") -AnnotationAssertion( "ubiquitin-like hydrolase activity") -AnnotationAssertion( "ubiquitin-like protein-specific isopeptidase activity") -AnnotationAssertion( "ubiquitin-like protein-specific protease activity") -AnnotationAssertion( "ubiquitinyl-like hydrolase activity") -AnnotationAssertion( "ubiquitin-like specific protease activity") -AnnotationAssertion( "ubiquitin-like-protein-specific protease activity") -AnnotationAssertion( "ubiquitin-specific protease activity involved in negative regulation of ERAD pathway") -AnnotationAssertion( "ubiquitin-specific protease activity involved in positive regulation of ERAD pathway") -AnnotationAssertion( "molecular_function") -AnnotationAssertion( "GO:0019783") -AnnotationAssertion(rdfs:comment "While ubiquitin-like proteins can be rarely linked to substrates via bonds other than isopeptide bonds, all known ubiquitin-like peptidases cleave the isopeptide bond.") -AnnotationAssertion(rdfs:label "ubiquitin-like protein peptidase activity") -SubClassOf( ) - -# Class: (Atg8-specific peptidase activity) - -AnnotationAssertion(Annotation( "GOC:mah") Annotation( "PMID:28901328") "A thiol-dependent isopeptidase activity that cleaves APG8 from a target protein to which it is conjugated.") -AnnotationAssertion( "Atg8-specific protease activity") +# Class: (protein-phosphatidylethanolamide deconjugating activity) + +AnnotationAssertion(Annotation( "PMID:22240591") Annotation( "PMID:22652539") Annotation( "PMID:28330855") Annotation( "PMID:2882172") Annotation( "PMID:28901328") "Catalysis of the reaction: [protein]-C-terminal L-amino acid-glycyl-phosphatidylethanolamide + H2O = [protein]-C-terminal L-amino acid-glycine + a 1,2-diacyl-sn-glycero-3-phosphoethanolamine. An example of this reaction is the removal of ATG8 from membranes to which it is covalently linked to a phosphatidylethanolamid via its terminal glycine residue.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/25472"^^xsd:anyURI) +AnnotationAssertion(Annotation( "skos:narrowMatch") "Atg8-specific protease activity") +AnnotationAssertion(Annotation( "GOC:vw") "APG8-specific protease activity") +AnnotationAssertion(Annotation( "skos:narrowMatch") "ATG8-PE deconjugation activity") +AnnotationAssertion(Annotation( "skos:narrowMatch") "ATG8-PE hydrolase activity") +AnnotationAssertion(Annotation( "skos:narrowMatch") "Atg8-specific peptidase activity") AnnotationAssertion( "molecular_function") -AnnotationAssertion( "APG8-PE hydrolase") -AnnotationAssertion(Annotation( "GOC:vw") "APG8-specific protease activity") +AnnotationAssertion(Annotation( "skos:narrowMatch") "APG8-PE hydrolase") AnnotationAssertion( "GO:0019786") -AnnotationAssertion(rdfs:label "Atg8-specific peptidase activity") -SubClassOf( ) -SubClassOf( ) +AnnotationAssertion(rdfs:label "protein-phosphatidylethanolamide deconjugating activity") +SubClassOf( ) +SubClassOf( ) # Class: (ubiquitin-like protein transferase activity) -AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:rn") Annotation( "PMID:10806345") Annotation( "PMID:10884686") "Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y --> Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein.") +AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:rn") Annotation( "PMID:10806345") Annotation( "PMID:10884686") "Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y = Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24697"^^xsd:anyURI) AnnotationAssertion( "GO:0008639") AnnotationAssertion( "GO:0008640") +AnnotationAssertion( "E2") AnnotationAssertion(Annotation(rdfs:label "ATG16L1 complex transfers LC3 from ATG3 to PE") "Reactome:R-HSA-5678490") AnnotationAssertion(Annotation(rdfs:label "RIP2 is K63 polyubiquitinated") "Reactome:R-HSA-688137") AnnotationAssertion(Annotation( "GOC:dph") "small conjugating protein transferase activity") @@ -63916,7 +67108,6 @@ AnnotationAssertion( "ubiquitin-like conjugating enzyme activity") AnnotationAssertion( "ubiquitin-like-protein ligase activity") AnnotationAssertion( "molecular_function") -AnnotationAssertion( "E2") AnnotationAssertion(Annotation( "GOC:dph") "E3") AnnotationAssertion( "GO:0019787") AnnotationAssertion( ) @@ -67365,8 +70556,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "reproductive process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (digestive system process) @@ -67387,8 +70576,6 @@ AnnotationAssertion( "menstrual cycle process") AnnotationAssertion( "GO:0022602") AnnotationAssertion(rdfs:label "ovulation cycle process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -67565,7 +70752,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:mtg_cardio") Annotation( "GOC:mtg_transport") "Any process that modulates the frequency, rate or extent of transmembrane transporter activity.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0022898") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -68903,6 +72090,15 @@ AnnotationAssertion(rdfs:label "fema SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (adenyl nucleotide binding) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "Binding to an adenyl nucleotide, an adenosine esterified with (ortho)phosphate.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0030554") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "adenyl nucleotide binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (bile acid catabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the breakdown of bile acids, any of a group of steroid carboxylic acids occurring in bile.") @@ -69121,6 +72317,93 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectAllValuesFrom( )) +# Class: (regulation of nucleotide biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides.") +AnnotationAssertion( "regulation of nucleotide anabolism") +AnnotationAssertion( "regulation of nucleotide biosynthesis") +AnnotationAssertion( "regulation of nucleotide formation") +AnnotationAssertion( "regulation of nucleotide synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0030808") +AnnotationAssertion(rdfs:label "regulation of nucleotide biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of nucleotide biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides.") +AnnotationAssertion( "down regulation of nucleotide biosynthetic process") +AnnotationAssertion( "down-regulation of nucleotide biosynthetic process") +AnnotationAssertion( "downregulation of nucleotide biosynthetic process") +AnnotationAssertion( "negative regulation of nucleotide anabolism") +AnnotationAssertion( "negative regulation of nucleotide biosynthesis") +AnnotationAssertion( "negative regulation of nucleotide formation") +AnnotationAssertion( "negative regulation of nucleotide synthesis") +AnnotationAssertion( "inhibition of nucleotide biosynthetic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0030809") +AnnotationAssertion(rdfs:label "negative regulation of nucleotide biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of nucleotide biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides.") +AnnotationAssertion( "positive regulation of nucleotide anabolism") +AnnotationAssertion( "positive regulation of nucleotide biosynthesis") +AnnotationAssertion( "positive regulation of nucleotide formation") +AnnotationAssertion( "positive regulation of nucleotide synthesis") +AnnotationAssertion( "up regulation of nucleotide biosynthetic process") +AnnotationAssertion( "up-regulation of nucleotide biosynthetic process") +AnnotationAssertion( "upregulation of nucleotide biosynthetic process") +AnnotationAssertion( "activation of nucleotide biosynthetic process") +AnnotationAssertion( "stimulation of nucleotide biosynthetic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0030810") +AnnotationAssertion(rdfs:label "positive regulation of nucleotide biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (regulation of nucleotide catabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides.") +AnnotationAssertion( "regulation of nucleotide breakdown") +AnnotationAssertion( "regulation of nucleotide catabolism") +AnnotationAssertion( "regulation of nucleotide degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0030811") +AnnotationAssertion(rdfs:label "regulation of nucleotide catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of nucleotide catabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides.") +AnnotationAssertion( "down regulation of nucleotide catabolic process") +AnnotationAssertion( "down-regulation of nucleotide catabolic process") +AnnotationAssertion( "downregulation of nucleotide catabolic process") +AnnotationAssertion( "negative regulation of nucleotide breakdown") +AnnotationAssertion( "negative regulation of nucleotide catabolism") +AnnotationAssertion( "negative regulation of nucleotide degradation") +AnnotationAssertion( "inhibition of nucleotide catabolic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0030812") +AnnotationAssertion(rdfs:label "negative regulation of nucleotide catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of nucleotide catabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides.") +AnnotationAssertion( "positive regulation of nucleotide breakdown") +AnnotationAssertion( "positive regulation of nucleotide catabolism") +AnnotationAssertion( "positive regulation of nucleotide degradation") +AnnotationAssertion( "up regulation of nucleotide catabolic process") +AnnotationAssertion( "up-regulation of nucleotide catabolic process") +AnnotationAssertion( "upregulation of nucleotide catabolic process") +AnnotationAssertion( "activation of nucleotide catabolic process") +AnnotationAssertion( "stimulation of nucleotide catabolic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0030813") +AnnotationAssertion(rdfs:label "positive regulation of nucleotide catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (prostate gland development) AnnotationAssertion(Annotation( "PMID:11839751") "The process whose specific outcome is the progression of the prostate gland over time, from its formation to the mature structure. The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid.") @@ -70729,7 +74012,7 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "nuclease regulator activity") AnnotationAssertion( "GO:0032069") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of nuclease activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -70741,7 +74024,7 @@ AnnotationAssertion( "DNase regulator") AnnotationAssertion( "deoxyribonuclease regulator") AnnotationAssertion( "GO:0032070") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of deoxyribonuclease activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -70756,7 +74039,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "nuclease inhibitor") AnnotationAssertion( "GO:0032074") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of nuclease activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -70772,7 +74055,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "nuclease activator") AnnotationAssertion( "GO:0032075") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of nuclease activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -70788,7 +74071,7 @@ AnnotationAssertion( "DNase inhibitor") AnnotationAssertion( "deoxyribonuclease inhibitor") AnnotationAssertion( "GO:0032076") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of deoxyribonuclease activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -70805,7 +74088,7 @@ AnnotationAssertion( "DNase activator") AnnotationAssertion( "deoxyribonuclease activator") AnnotationAssertion( "GO:0032077") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of deoxyribonuclease activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -70819,7 +74102,7 @@ AnnotationAssertion( "inhibition of protein binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032091") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of protein binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -70833,7 +74116,7 @@ AnnotationAssertion( "stimulation of protein binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032092") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of protein binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -71019,6 +74302,14 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) +# Class: (adenosine transport) + +AnnotationAssertion(Annotation( "GOC:mah") "The directed movement of adenosine, adenine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0032238") +AnnotationAssertion(rdfs:label "adenosine transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of nucleobase-containing compound transport) AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") @@ -71055,6 +74346,110 @@ AnnotationAssertion( "positive regulation of nucleobase-containing compound transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (regulation of nucleoside transport) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0032242") +AnnotationAssertion(rdfs:label "regulation of nucleoside transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of nucleoside transport) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "down regulation of nucleoside transport") +AnnotationAssertion( "down-regulation of nucleoside transport") +AnnotationAssertion( "downregulation of nucleoside transport") +AnnotationAssertion( "inhibition of nucleoside transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0032243") +AnnotationAssertion(rdfs:label "negative regulation of nucleoside transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of nucleoside transport) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "up regulation of nucleoside transport") +AnnotationAssertion( "up-regulation of nucleoside transport") +AnnotationAssertion( "upregulation of nucleoside transport") +AnnotationAssertion( "activation of nucleoside transport") +AnnotationAssertion( "stimulation of nucleoside transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0032244") +AnnotationAssertion(rdfs:label "positive regulation of nucleoside transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (regulation of purine nucleoside transport) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0032245") +AnnotationAssertion(rdfs:label "regulation of purine nucleoside transport") +SubClassOf( ) + +# Class: (negative regulation of purine nucleoside transport) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "down regulation of purine nucleoside transport") +AnnotationAssertion( "down-regulation of purine nucleoside transport") +AnnotationAssertion( "downregulation of purine nucleoside transport") +AnnotationAssertion( "inhibition of purine nucleoside transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0032247") +AnnotationAssertion(rdfs:label "negative regulation of purine nucleoside transport") +SubClassOf( ) +SubClassOf( ) + +# Class: (positive regulation of purine nucleoside transport) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "up regulation of purine nucleoside transport") +AnnotationAssertion( "up-regulation of purine nucleoside transport") +AnnotationAssertion( "upregulation of purine nucleoside transport") +AnnotationAssertion( "activation of purine nucleoside transport") +AnnotationAssertion( "stimulation of purine nucleoside transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0032248") +AnnotationAssertion(rdfs:label "positive regulation of purine nucleoside transport") +SubClassOf( ) +SubClassOf( ) + +# Class: (regulation of adenosine transport) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0032249") +AnnotationAssertion(rdfs:label "regulation of adenosine transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (negative regulation of adenosine transport) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "down regulation of adenosine transport") +AnnotationAssertion( "down-regulation of adenosine transport") +AnnotationAssertion( "downregulation of adenosine transport") +AnnotationAssertion( "inhibition of adenosine transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0032250") +AnnotationAssertion(rdfs:label "negative regulation of adenosine transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (positive regulation of adenosine transport) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "up regulation of adenosine transport") +AnnotationAssertion( "up-regulation of adenosine transport") +AnnotationAssertion( "upregulation of adenosine transport") +AnnotationAssertion( "activation of adenosine transport") +AnnotationAssertion( "stimulation of adenosine transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0032251") +AnnotationAssertion(rdfs:label "positive regulation of adenosine transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + # Class: (secretory granule localization) AnnotationAssertion(Annotation( "GOC:mah") "Any process in which a secretory granule is transported to, and/or maintained in, a specific location within the cell.") @@ -71158,6 +74553,7 @@ SubClassOf(Annotation( (myelin assembly) AnnotationAssertion(Annotation( "GOC:dgh") Annotation( "GOC:dph") Annotation( "GOC:tb") "The process in which the wraps of cell membrane that constitute myelin are laid down around an axon in the central or peripheral nervous system.") +AnnotationAssertion( "myelin sheath assembly") AnnotationAssertion( "biological_process") AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "myelin formation") AnnotationAssertion( "GO:0032288") @@ -71169,6 +74565,7 @@ SubClassOf( ObjectSomeValuesFrom( (central nervous system myelin formation) AnnotationAssertion(Annotation( "GOC:dgh") "The process in which the wraps of cell membrane that constitute myelin are laid down around an axon by an oligodendrocyte in the central nervous system.") +AnnotationAssertion( "central nervous system myelin sheath formation") AnnotationAssertion( "myelin formation in central nervous system") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032289") @@ -71184,6 +74581,7 @@ SubClassOf( ObjectAllValuesFrom( "GOC:dgh") "The process in which the wraps of cell membrane that constitute myelin are laid down around an axon by Schwann cells in the peripheral nervous system.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19106"^^xsd:anyURI) AnnotationAssertion( "myelin formation in peripheral nervous system") +AnnotationAssertion( "peripheral nervous system myelin sheath formation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032290") AnnotationAssertion(rdfs:label "peripheral nervous system myelin formation") @@ -71595,7 +74993,7 @@ SubClassOf( "GOC:mah") "Any process that modulates the activity of a transporter.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032409") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -71608,7 +75006,7 @@ AnnotationAssertion( "inhibition of transporter activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032410") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -71623,7 +75021,7 @@ AnnotationAssertion( "stimulation of transporter activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032411") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -71635,7 +75033,7 @@ AnnotationAssertion( "GOC:tb") "regulation of ion transporter activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032412") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of monoatomic ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -71649,7 +75047,7 @@ AnnotationAssertion(Annotation( "inhibition of ion transporter activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032413") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -71665,7 +75063,7 @@ AnnotationAssertion( "stimulation of ion transporter activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032414") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -71864,6 +75262,46 @@ AnnotationAssertion( "regulation of microvillus assembly") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (ribonucleoside binding) + +AnnotationAssertion(Annotation( "GOC:mah") "Binding to a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0032549") +AnnotationAssertion(rdfs:label "ribonucleoside binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleoside binding) + +AnnotationAssertion(Annotation( "GOC:mah") "Binding to a purine ribonucleoside, a compound consisting of a purine base linked to ribose.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0032550") +AnnotationAssertion(rdfs:label "purine ribonucleoside binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleotide binding) + +AnnotationAssertion(Annotation( "GOC:mah") "Binding to a ribonucleotide, any compound consisting of a ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0032553") +AnnotationAssertion(rdfs:label "ribonucleotide binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleotide binding) + +AnnotationAssertion(Annotation( "GOC:mah") "Binding to a purine ribonucleotide, any compound consisting of a purine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0032555") +AnnotationAssertion(rdfs:label "purine ribonucleotide binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (adenyl ribonucleotide binding) + +AnnotationAssertion(Annotation( "GOC:mah") "Binding to an adenyl ribonucleotide, any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0032559") +AnnotationAssertion(rdfs:label "adenyl ribonucleotide binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (response to progesterone) AnnotationAssertion(Annotation( "GOC:sl") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a progesterone stimulus.") @@ -71937,7 +75375,7 @@ AnnotationAssertion( "inhibition of ATPase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032780") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of ATP-dependent activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -71954,7 +75392,7 @@ AnnotationAssertion( "stimulation of ATPase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032781") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of ATP-dependent activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -72443,14 +75881,13 @@ SubClassOf( (cellular component morphogenesis) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:mah") Annotation( "GOC:tb") "The process in which cellular structures, including whole cells or cell parts, are generated and organized.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/25496"^^xsd:anyURI) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "cellular structure morphogenesis") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032989") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cellular component morphogenesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) # Class: (cell part morphogenesis) @@ -72876,6 +76313,39 @@ AnnotationAssertion( "positive regulation of immature T cell proliferation in thymus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (regulation of purine nucleotide catabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides.") +AnnotationAssertion( "regulation of purine nucleotide breakdown") +AnnotationAssertion( "regulation of purine nucleotide catabolism") +AnnotationAssertion( "regulation of purine nucleotide degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0033121") +AnnotationAssertion(rdfs:label "regulation of purine nucleotide catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of purine nucleotide catabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides.") +AnnotationAssertion( "negative regulation of purine nucleotide breakdown") +AnnotationAssertion( "negative regulation of purine nucleotide catabolism") +AnnotationAssertion( "negative regulation of purine nucleotide degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0033122") +AnnotationAssertion(rdfs:label "negative regulation of purine nucleotide catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of purine nucleotide catabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides.") +AnnotationAssertion( "positive regulation of purine nucleotide breakdown") +AnnotationAssertion( "positive regulation of purine nucleotide catabolism") +AnnotationAssertion( "positive regulation of purine nucleotide degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0033123") +AnnotationAssertion(rdfs:label "positive regulation of purine nucleotide catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of intracellular steroid hormone receptor signaling pathway) AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway.") @@ -72954,6 +76424,16 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (response to ATP) + +AnnotationAssertion(Annotation( "GOC:sl") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus.") +AnnotationAssertion( "response to adenosine 5'-triphosphate") +AnnotationAssertion( "response to adenosine triphosphate") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0033198") +AnnotationAssertion(rdfs:label "response to ATP") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (iron import into cell) AnnotationAssertion(Annotation( "PMID:18622392") Annotation( "PMID:23192658") Annotation( "Wikipedia:Human_iron_metabolism") "The directed movement of iron ions from outside of a cell into the cytoplasmic compartment. This may occur via transport across the plasma membrane or via endocytosis.") @@ -73160,7 +76640,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of collagen binding.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0033341") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of collagen binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -73173,7 +76653,7 @@ AnnotationAssertion( "inhibition of collagen binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0033342") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of collagen binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -73187,7 +76667,7 @@ AnnotationAssertion( "stimulation of collagen binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0033343") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of collagen binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -73385,7 +76865,7 @@ AnnotationAssertion( "kinase inhibitor") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0033673") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -73400,7 +76880,7 @@ AnnotationAssertion( "stimulation of kinase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0033674") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -73859,6 +77339,20 @@ AnnotationAssertion( "positive regulation of smooth muscle cell apoptotic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (nucleobase-containing small molecule biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:mah") "The chemical reactions and pathways resulting in the formation of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.") +AnnotationAssertion( "nucleobase, nucleoside and nucleotide anabolism") +AnnotationAssertion( "nucleobase, nucleoside and nucleotide biosynthesis") +AnnotationAssertion( "nucleobase, nucleoside and nucleotide formation") +AnnotationAssertion( "nucleobase, nucleoside and nucleotide synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0034404") +AnnotationAssertion(rdfs:label "nucleobase-containing small molecule biosynthetic process") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + # Class: (tectobulbar tract morphogenesis) AnnotationAssertion(Annotation( "GOC:dsf") Annotation( "PMID:15065115") Annotation( "PMID:17507550") Annotation( "PMID:8038988") "Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain.") @@ -73970,6 +77464,19 @@ AnnotationAssertion(rdfs:label "nucl EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (nucleobase-containing small molecule catabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "The chemical reactions and pathways resulting in the breakdown of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide.") +AnnotationAssertion( "nucleobase, nucleoside and nucleotide breakdown") +AnnotationAssertion( "nucleobase, nucleoside and nucleotide catabolism") +AnnotationAssertion( "nucleobase, nucleoside and nucleotide degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0034656") +AnnotationAssertion(rdfs:label "nucleobase-containing small molecule catabolic process") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + # Class: (anterior/posterior pattern specification involved in pronephros development) AnnotationAssertion(Annotation( "GOC:mah") "The developmental process that results in the creation of defined areas or spaces within the pronephros along the anterior/posterior axis to which cells respond and eventually are instructed to differentiate.") @@ -74939,7 +78446,7 @@ AnnotationAssertion( "2010-05-19T10:28:36Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0035561") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of chromatin binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -74950,7 +78457,7 @@ AnnotationAssertion( "2010-05-19T10:29:06Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0035562") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of chromatin binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -74961,7 +78468,7 @@ AnnotationAssertion( "2010-05-19T10:29:41Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0035563") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of chromatin binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -74979,6 +78486,48 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (G protein-coupled purinergic receptor signaling pathway) + +AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "PMID:9755289") "A G protein-coupled receptor signaling pathway initiated by an extracellular purine or purine derivative binding to its receptor, and ending with the regulation of a downstream cellular process.") +AnnotationAssertion( "bf") +AnnotationAssertion( "2010-10-22T11:11:53Z") +AnnotationAssertion( "G-protein coupled purinergic receptor signaling pathway") +AnnotationAssertion(Annotation( "GOC:mah") "G-protein coupled purinergic receptor signalling pathway") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0035588") +AnnotationAssertion(rdfs:label "G protein-coupled purinergic receptor signaling pathway") +SubClassOf( ) +SubClassOf( ) + +# Class: (G protein-coupled purinergic nucleotide receptor signaling pathway) + +AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "PMID:9755289") "A G protein-coupled receptor signaling pathway initiated by an extracellular purine nucleotide binding to its receptor, and ending with the regulation of a downstream cellular process.") +AnnotationAssertion( "bf") +AnnotationAssertion( "2010-10-22T11:18:59Z") +AnnotationAssertion( "G-protein coupled purinergic nucleotide receptor signaling pathway") +AnnotationAssertion(Annotation( "GOC:mah") "G-protein coupled purinergic nucleotide receptor signalling pathway") +AnnotationAssertion(Annotation( "PMID:9755289") "P2Y receptor signaling pathway") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0035589") +AnnotationAssertion(rdfs:label "G protein-coupled purinergic nucleotide receptor signaling pathway") +SubClassOf( ) + +# Class: (purinergic nucleotide receptor signaling pathway) + +AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "PMID:9755289") "The series of molecular signals initiated by an extracellular purine nucleotide binding to its receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.") +AnnotationAssertion( "bf") +AnnotationAssertion( "2010-10-22T11:09:40Z") +AnnotationAssertion( "GO:0035587") +AnnotationAssertion(Annotation( "GOC:mah") "purinergic nucleotide receptor signalling pathway") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "PMID:9755289") "P2 receptor signaling pathway") +AnnotationAssertion( "purinergic receptor signaling pathway") +AnnotationAssertion(Annotation( "GOC:mah") "purinergic receptor signalling pathway") +AnnotationAssertion(Annotation( "PMID:9755289") "purinoceptor signaling pathway") +AnnotationAssertion( "GO:0035590") +AnnotationAssertion(rdfs:label "purinergic nucleotide receptor signaling pathway") +SubClassOf( ) + # Class: (establishment of protein localization to extracellular region) AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:bf") "The directed movement of a protein to a specific location within the extracellular region.") @@ -75042,6 +78591,17 @@ AnnotationAssertion(rdfs:comment "Bo AnnotationAssertion(rdfs:label "bone mineralization involved in bone maturation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (purine ribonucleoside triphosphate binding) + +AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:ebc") Annotation( "ISBN:0198506732") "Binding to a purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar.") +AnnotationAssertion( "bf") +AnnotationAssertion( "2011-01-14T02:46:42Z") +AnnotationAssertion(Annotation( "GOC:ebc") "purine NTP binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0035639") +AnnotationAssertion(rdfs:label "purine ribonucleoside triphosphate binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (enteric smooth muscle cell differentiation) AnnotationAssertion(Annotation( "CL:0002504") Annotation( "GOC:BHF") "The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell of the intestine.") @@ -77484,6 +81044,17 @@ AnnotationAssertion( "peptide binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (purine nucleoside metabolic process) + +AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0140512713") "The chemical reactions and pathways involving one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).") +AnnotationAssertion( "purine metabolic process") +AnnotationAssertion( "purine metabolism") +AnnotationAssertion( "purine nucleoside metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0042278") +AnnotationAssertion(rdfs:label "purine nucleoside metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (phosphate ion binding) AnnotationAssertion(Annotation( "GOC:jl") "Binding to a phosphate ion.") @@ -78064,6 +81635,41 @@ AnnotationAssertion( "progesterone metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (purine nucleoside biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the formation of any purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).") +AnnotationAssertion( "purine nucleoside anabolism") +AnnotationAssertion( "purine nucleoside biosynthesis") +AnnotationAssertion( "purine nucleoside formation") +AnnotationAssertion( "purine nucleoside synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0042451") +AnnotationAssertion(rdfs:label "purine nucleoside biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleoside catabolic process) + +AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways resulting in the breakdown of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.") +AnnotationAssertion( "ribonucleoside breakdown") +AnnotationAssertion( "ribonucleoside catabolism") +AnnotationAssertion( "ribonucleoside degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0042454") +AnnotationAssertion(rdfs:label "ribonucleoside catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ribonucleoside biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways resulting in the formation of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.") +AnnotationAssertion( "ribonucleoside anabolism") +AnnotationAssertion( "ribonucleoside biosynthesis") +AnnotationAssertion( "ribonucleoside formation") +AnnotationAssertion( "ribonucleoside synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0042455") +AnnotationAssertion(rdfs:label "ribonucleoside biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (photoreceptor cell development) AnnotationAssertion(Annotation( "GOC:go_curators") "Development of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light.") @@ -79109,8 +82715,8 @@ AnnotationAssertion( "upregulation of metalloenzyme activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043085") +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of catalytic activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -79130,7 +82736,7 @@ AnnotationAssertion( "negative regulation of metalloenzyme activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043086") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of catalytic activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -79811,7 +83417,7 @@ AnnotationAssertion( "stimulation of DNA binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043388") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of DNA binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -79824,7 +83430,7 @@ AnnotationAssertion( "inhibition of DNA binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043392") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of DNA binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -79833,7 +83439,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that modulates the frequency, rate or extent of protein binding.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043393") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of protein binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -80001,7 +83607,7 @@ AnnotationAssertion( "regulation of adenosinetriphosphatase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043462") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of ATP-dependent activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -80129,6 +83735,16 @@ AnnotationAssertion( "positive regulation of neuron apoptotic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (ADP binding) + +AnnotationAssertion(Annotation( "GOC:jl") "Binding to ADP, adenosine 5'-diphosphate.") +AnnotationAssertion( "adenosine 5'-diphosphate binding") +AnnotationAssertion( "adenosine diphosphate binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0043531") +AnnotationAssertion(rdfs:label "ADP binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (blood vessel endothelial cell migration) AnnotationAssertion(Annotation( "PMID:11166264") "The orderly movement of an endothelial cell into the extracellular matrix in order to form new blood vessels during angiogenesis.") @@ -80184,7 +83800,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:bf") "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043549") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -80558,7 +84174,7 @@ AnnotationAssertion( "2009-04-21T04:07:27Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0044092") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of molecular function") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -80570,7 +84186,7 @@ AnnotationAssertion( "2009-04-21T04:11:06Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0044093") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of molecular function") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -80947,16 +84563,16 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectAllValuesFrom( )) -# Class: (autophagy of nucleus) +# Class: (nucleophagy) AnnotationAssertion(Annotation( "GOC:autophagy") Annotation( "GOC:jl") Annotation( "PMID:24013549") "A form of autophagy, by which damaged or non-essential parts of the nucleus, or even an entire nucleus is degraded.") AnnotationAssertion( "jl") AnnotationAssertion( "2013-09-10T15:50:25Z") -AnnotationAssertion( "nucleus degradation") +AnnotationAssertion( "autophagy of nucleus") AnnotationAssertion( "biological_process") -AnnotationAssertion( "nucleophagy") +AnnotationAssertion( "nucleus degradation") AnnotationAssertion( "GO:0044804") -AnnotationAssertion(rdfs:label "autophagy of nucleus") +AnnotationAssertion(rdfs:label "nucleophagy") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -81044,6 +84660,31 @@ AnnotationAssertion(rdfs:label "plas EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (G protein-coupled purinergic nucleotide receptor activity) + +AnnotationAssertion(Annotation( "GOC:mah") Annotation( "PMID:9755289") "Combining with a purine nucleotide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.") +AnnotationAssertion( "G protein coupled purinergic nucleotide receptor activity") +AnnotationAssertion( "G-protein coupled purinergic nucleotide receptor activity") +AnnotationAssertion( "purinergic nucleotide receptor activity, G protein coupled") +AnnotationAssertion(Annotation( "GOC:bf") "purinergic nucleotide receptor activity, G-protein coupled") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "P2Y") +AnnotationAssertion(Annotation( "PMID:9755289") "P2Y receptor") +AnnotationAssertion( "GO:0045028") +AnnotationAssertion(rdfs:label "G protein-coupled purinergic nucleotide receptor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (G protein-coupled ATP receptor activity) + +AnnotationAssertion(Annotation( "GOC:mah") "Combining with ATP and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.") +AnnotationAssertion( "ATP-activated nucleotide receptor activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "ATP-activated adenosine receptor activity") +AnnotationAssertion( "GO:0045031") +AnnotationAssertion(rdfs:label "G protein-coupled ATP receptor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulated exocytosis) AnnotationAssertion(Annotation( "GOC:mah") Annotation( "ISBN:0716731363") "A process of exocytosis in which soluble proteins and other substances are initially stored in secretory vesicles for later release. It is found mainly in cells that are specialized for secreting products such as hormones, neurotransmitters, or digestive enzymes rapidly on demand.") @@ -83312,7 +86953,7 @@ SubClassOf( "GOC:go_curators") "Any process that modulates the frequency, rate or extent of protein kinase activity.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0045859") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of protein kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -83326,7 +86967,7 @@ AnnotationAssertion( "stimulation of protein kinase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0045860") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of protein kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -83931,6 +87572,89 @@ AnnotationAssertion( "positive regulation of juvenile hormone secretion") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (negative regulation of nucleoside metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleosides.") +AnnotationAssertion( "down regulation of nucleoside metabolic process") +AnnotationAssertion( "down-regulation of nucleoside metabolic process") +AnnotationAssertion( "downregulation of nucleoside metabolic process") +AnnotationAssertion( "negative regulation of nucleoside metabolism") +AnnotationAssertion( "inhibition of nucleoside metabolic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0045978") +AnnotationAssertion(rdfs:label "negative regulation of nucleoside metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of nucleoside metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleosides.") +AnnotationAssertion( "positive regulation of nucleoside metabolism") +AnnotationAssertion( "up regulation of nucleoside metabolic process") +AnnotationAssertion( "up-regulation of nucleoside metabolic process") +AnnotationAssertion( "upregulation of nucleoside metabolic process") +AnnotationAssertion( "activation of nucleoside metabolic process") +AnnotationAssertion( "stimulation of nucleoside metabolic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0045979") +AnnotationAssertion(rdfs:label "positive regulation of nucleoside metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of nucleotide metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleotides.") +AnnotationAssertion( "down regulation of nucleotide metabolic process") +AnnotationAssertion( "down-regulation of nucleotide metabolic process") +AnnotationAssertion( "downregulation of nucleotide metabolic process") +AnnotationAssertion( "negative regulation of nucleotide metabolism") +AnnotationAssertion( "inhibition of nucleotide metabolic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0045980") +AnnotationAssertion(rdfs:label "negative regulation of nucleotide metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of nucleotide metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleotides.") +AnnotationAssertion( "positive regulation of nucleotide metabolism") +AnnotationAssertion( "up regulation of nucleotide metabolic process") +AnnotationAssertion( "up-regulation of nucleotide metabolic process") +AnnotationAssertion( "upregulation of nucleotide metabolic process") +AnnotationAssertion( "activation of nucleotide metabolic process") +AnnotationAssertion( "stimulation of nucleotide metabolic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0045981") +AnnotationAssertion(rdfs:label "positive regulation of nucleotide metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of purine nucleobase metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving purine nucleobases.") +AnnotationAssertion( "down regulation of purine base metabolic process") +AnnotationAssertion( "down-regulation of purine base metabolic process") +AnnotationAssertion( "downregulation of purine base metabolic process") +AnnotationAssertion(Annotation( "GOC:go_curators") "negative regulation of purine base metabolic process") +AnnotationAssertion( "negative regulation of purine base metabolism") +AnnotationAssertion( "inhibition of purine base metabolic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0045982") +AnnotationAssertion(rdfs:label "negative regulation of purine nucleobase metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of purine nucleobase metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving purine bases.") +AnnotationAssertion( "positive regulation of purine base metabolic process") +AnnotationAssertion( "positive regulation of purine base metabolism") +AnnotationAssertion( "up regulation of purine base metabolic process") +AnnotationAssertion( "up-regulation of purine base metabolic process") +AnnotationAssertion( "upregulation of purine base metabolic process") +AnnotationAssertion( "activation of purine base metabolic process") +AnnotationAssertion( "stimulation of purine base metabolic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0045983") +AnnotationAssertion(rdfs:label "positive regulation of purine nucleobase metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (negative regulation of smooth muscle contraction) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of smooth muscle contraction.") @@ -84058,6 +87782,77 @@ AnnotationAssertion( "negative regulation of T cell homeostatic proliferation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (ADP metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways involving ADP, adenosine 5'-diphosphate.") +AnnotationAssertion( "ADP metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046031") +AnnotationAssertion(rdfs:label "ADP metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ADP catabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the breakdown of ADP, adenosine 5'-diphosphate.") +AnnotationAssertion( "ADP breakdown") +AnnotationAssertion( "ADP catabolism") +AnnotationAssertion( "ADP degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046032") +AnnotationAssertion(rdfs:label "ADP catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (ATP metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator.") +AnnotationAssertion( "ATP metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046034") +AnnotationAssertion(rdfs:label "ATP metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (adenine metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways involving adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine.") +AnnotationAssertion( "adenine metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046083") +AnnotationAssertion(rdfs:label "adenine metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (adenine biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the formation of adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine.") +AnnotationAssertion( "adenine anabolism") +AnnotationAssertion( "adenine biosynthesis") +AnnotationAssertion( "adenine formation") +AnnotationAssertion( "adenine synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046084") +AnnotationAssertion(rdfs:label "adenine biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (adenosine metabolic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.") +AnnotationAssertion( "adenosine metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046085") +AnnotationAssertion(rdfs:label "adenosine metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (adenosine biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:go_curators") "The chemical reactions and pathways resulting in the formation of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.") +AnnotationAssertion( "adenosine anabolism") +AnnotationAssertion( "adenosine biosynthesis") +AnnotationAssertion( "adenosine formation") +AnnotationAssertion( "adenosine synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046086") +AnnotationAssertion(rdfs:label "adenosine biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (nucleobase biosynthetic process) AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the formation of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid.") @@ -84081,6 +87876,38 @@ AnnotationAssertion( "nucleobase catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (purine ribonucleoside metabolic process) + +AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule.") +AnnotationAssertion( "purine ribonucleoside metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046128") +AnnotationAssertion(rdfs:label "purine ribonucleoside metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleoside biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the formation of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule.") +AnnotationAssertion( "purine ribonucleoside anabolism") +AnnotationAssertion( "purine ribonucleoside biosynthesis") +AnnotationAssertion( "purine ribonucleoside formation") +AnnotationAssertion( "purine ribonucleoside synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046129") +AnnotationAssertion(rdfs:label "purine ribonucleoside biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (purine ribonucleoside catabolic process) + +AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the breakdown of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule.") +AnnotationAssertion( "purine ribonucleoside breakdown") +AnnotationAssertion( "purine ribonucleoside catabolism") +AnnotationAssertion( "purine ribonucleoside degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046130") +AnnotationAssertion(rdfs:label "purine ribonucleoside catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (pigment biosynthetic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin.") @@ -84280,6 +88107,18 @@ AnnotationAssertion(rdfs:label "mono EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (ribose phosphate biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways resulting in the formation of ribose phosphate, any phosphorylated ribose sugar.") +AnnotationAssertion( "ribose phosphate anabolism") +AnnotationAssertion( "ribose phosphate biosynthesis") +AnnotationAssertion( "ribose phosphate formation") +AnnotationAssertion( "ribose phosphate synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0046390") +AnnotationAssertion(rdfs:label "ribose phosphate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (carboxylic acid biosynthetic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of carboxylic acids, any organic acid containing one or more carboxyl (-COOH) groups.") @@ -87580,11 +91419,15 @@ EquivalentClasses( ObjectIntersection # Class: (stem cell differentiation) AnnotationAssertion(Annotation( "CL:0000034") Annotation( "GOC:isa_complete") "The process in which a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.") +AnnotationAssertion( ) AnnotationAssertion( "Wikipedia:Stem_cell_differentiation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0048863") AnnotationAssertion(rdfs:label "stem cell differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (stem cell development) @@ -88585,8 +92428,8 @@ AnnotationAssertion( "regulation of metalloenzyme activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0050790") +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of catalytic activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -89970,7 +93813,7 @@ SubClassOf( "GOC:ai") "Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051098") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -89984,7 +93827,7 @@ AnnotationAssertion( "stimulation of binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051099") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -89997,7 +93840,7 @@ AnnotationAssertion( "inhibition of binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051100") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90006,7 +93849,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:dph") Annotation( "GOC:tb") "Any process that modulates the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid).") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051101") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of DNA binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90666,7 +94509,7 @@ AnnotationAssertion(Annotation( "hydrolase regulator") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051336") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of hydrolase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90676,8 +94519,8 @@ AnnotationAssertion(Annotation( "transferase regulator") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051338") +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead.") AnnotationAssertion(rdfs:label "regulation of transferase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90688,7 +94531,7 @@ AnnotationAssertion(Annotation( "ligase regulator") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051340") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of ligase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90703,7 +94546,7 @@ AnnotationAssertion( "stimulation of hydrolase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051345") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of hydrolase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90717,7 +94560,7 @@ AnnotationAssertion( "inhibition of hydrolase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051346") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of hydrolase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90732,8 +94575,8 @@ AnnotationAssertion( "stimulation of transferase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051347") +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead.") AnnotationAssertion(rdfs:label "positive regulation of transferase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90748,8 +94591,8 @@ AnnotationAssertion( "inhibition of transferase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051348") +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead.") AnnotationAssertion(rdfs:label "negative regulation of transferase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90765,7 +94608,7 @@ AnnotationAssertion( "stimulation of ligase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051351") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of ligase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -90779,7 +94622,7 @@ AnnotationAssertion( "inhibition of ligase activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051352") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of ligase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -91084,6 +94927,14 @@ AnnotationAssertion( "positive regulation of cytoskeleton organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (adenine nucleotide transport) + +AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of adenine nucleotides, ATP, ADP, and/or AMP, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0051503") +AnnotationAssertion(rdfs:label "adenine nucleotide transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (keratinocyte migration) AnnotationAssertion(Annotation( "ISBN:0721662544") "The directed movement of a keratinocyte, epidermal cells which synthesize keratin, from one site to another.") @@ -92165,17 +96016,6 @@ AnnotationAssertion( "negative regulation of chromosome segregation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (regulation of peptidase activity) - -AnnotationAssertion(Annotation( "GOC:ai") "Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "peptidase regulator activity") -AnnotationAssertion( "GO:0052547") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulation of peptidase activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) - # Class: (imidazole-containing compound metabolic process) AnnotationAssertion(Annotation( "GOC:curators") "The chemical reactions and pathways involving imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton.") @@ -93386,6 +97226,33 @@ AnnotationAssertion(rdfs:label "olfa EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (regulation of adenosine receptor signaling pathway) + +AnnotationAssertion(Annotation( "GOC:dph") "Any process that modulates the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands.") +AnnotationAssertion(Annotation( "GOC:mah") "regulation of adenosine receptor signalling pathway") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0060167") +AnnotationAssertion(rdfs:label "regulation of adenosine receptor signaling pathway") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of adenosine receptor signaling pathway) + +AnnotationAssertion(Annotation( "GOC:dph") "Any process that activates or increases the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands.") +AnnotationAssertion(Annotation( "GOC:mah") "positive regulation of adenosine receptor signalling pathway") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0060168") +AnnotationAssertion(rdfs:label "positive regulation of adenosine receptor signaling pathway") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of adenosine receptor signaling pathway) + +AnnotationAssertion(Annotation( "GOC:dph") "Any process that stops, prevents, or reduces the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands.") +AnnotationAssertion(Annotation( "GOC:mah") "negative regulation of adenosine receptor signalling pathway") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0060169") +AnnotationAssertion(rdfs:label "negative regulation of adenosine receptor signaling pathway") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (ciliary membrane) AnnotationAssertion(Annotation( "GOC:cilia") Annotation( "GOC:dph") Annotation( "GOC:rph") "The portion of the plasma membrane surrounding a cilium.") @@ -97497,7 +101364,7 @@ AnnotationAssertion( "2010-04-26T02:34:53Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0061097") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of protein tyrosine kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -97509,7 +101376,7 @@ AnnotationAssertion( "2010-04-26T02:34:53Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0061098") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of protein tyrosine kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -97521,7 +101388,7 @@ AnnotationAssertion( "2010-04-26T02:34:53Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0061099") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of protein tyrosine kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -99761,23 +103628,23 @@ SubClassOf( (ubiquitin-like protein conjugating enzyme activity) -AnnotationAssertion(Annotation( "GOC:dph") "Isoenergetic transfer of a ubiquitin-like protein (ULP) from one protein to another via the reaction X-SCP + Y -> Y-SCP + X, where both the X-SCP and Y-SCP linkages are thioester bonds between the C-terminal amino acid of SCP and a sulfhydryl side group of a cysteine residue.") +AnnotationAssertion(Annotation( "GOC:dph") "Isoenergetic transfer of a ubiquitin-like protein (ULP) from one protein to another via the reaction X-SCP + Y = Y-SCP + X, where both the X-SCP and Y-SCP linkages are thioester bonds between the C-terminal amino acid of SCP and a sulfhydryl side group of a cysteine residue.") AnnotationAssertion( "dph") AnnotationAssertion( "2014-11-06T13:15:27Z") +AnnotationAssertion( "E2") AnnotationAssertion(Annotation( "GOC:dph") "small conjugating protein conjugating enzyme activity") AnnotationAssertion( "molecular_function") -AnnotationAssertion( "E2") AnnotationAssertion( "GO:0061650") AnnotationAssertion(rdfs:label "ubiquitin-like protein conjugating enzyme activity") SubClassOf( ) # Class: (Atg12 conjugating enzyme activity) -AnnotationAssertion(Annotation( "GOC:dph") "Isoenergetic transfer of Atg12 from one protein to another via the reaction X-Atg12 + Y -> Y-Atg12 + X, where both the X-Atg12 and Y-Atg12 linkages are thioester bonds between the C-terminal amino acid of Atg12 and a sulfhydryl side group of a cysteine residue.") +AnnotationAssertion(Annotation( "GOC:dph") "Isoenergetic transfer of Atg12 from one protein to another via the reaction X-Atg12 + Y = Y-Atg12 + X, where both the X-Atg12 and Y-Atg12 linkages are thioester bonds between the C-terminal amino acid of Atg12 and a sulfhydryl side group of a cysteine residue.") AnnotationAssertion( "dph") AnnotationAssertion( "2014-11-06T13:17:36Z") +AnnotationAssertion(Annotation( "GOC:dph") "E2") AnnotationAssertion( "molecular_function") -AnnotationAssertion(Annotation( "GOC:dph") "E2") AnnotationAssertion( "GO:0061651") AnnotationAssertion(rdfs:label "Atg12 conjugating enzyme activity") SubClassOf( ) @@ -99785,7 +103652,7 @@ SubClassOf( (ubiquitin-like protein ligase activity) -AnnotationAssertion(Annotation( "GOC:dph") "Catalysis of the transfer of a ubiquitin-like protein (ULP) to a substrate protein via the reaction X-ULP + S --> X + S-ULP, where X is either an E2 or E3 enzyme, the X-ULP linkage is a thioester bond, and the S-ULP linkage is an isopeptide bond between the C-terminal glycine of ULP and the epsilon-amino group of lysine residues in the substrate.") +AnnotationAssertion(Annotation( "GOC:dph") "Catalysis of the transfer of a ubiquitin-like protein (ULP) to a substrate protein via the reaction X-ULP + S = X + S-ULP, where X is either an E2 or E3 enzyme, the X-ULP linkage is a thioester bond, and the S-ULP linkage is an isopeptide bond between the C-terminal glycine of ULP and the epsilon-amino group of lysine residues in the substrate.") AnnotationAssertion( "dph") AnnotationAssertion( "2014-11-06T13:46:23Z") AnnotationAssertion(Annotation( "GOC:dph") "small conjugating protein ligase activity") @@ -99798,11 +103665,11 @@ SubClassOf( (Atg12 ligase activity) -AnnotationAssertion(Annotation( "GOC:dph") "Catalysis of the transfer of Atg12 to a substrate protein via the reaction X-Atg12 + S --> X + S-Atg12, where X is either an E2 or E3 enzyme, the X-Atg12 linkage is a thioester bond, and the S-Atg12 linkage is an isopeptide bond between the C-terminal amino acid of Atg12 and the epsilon-amino group of lysine residues in the substrate.") +AnnotationAssertion(Annotation( "GOC:dph") "Catalysis of the transfer of Atg12 to a substrate protein via the reaction X-Atg12 + S = X + S-Atg12, where X is either an E2 or E3 enzyme, the X-Atg12 linkage is a thioester bond, and the S-Atg12 linkage is an isopeptide bond between the C-terminal amino acid of Atg12 and the epsilon-amino group of lysine residues in the substrate.") AnnotationAssertion( "dph") AnnotationAssertion( "2014-11-06T13:50:42Z") +AnnotationAssertion(Annotation( "GOC:dph") "E3") AnnotationAssertion( "molecular_function") -AnnotationAssertion(Annotation( "GOC:dph") "E3") AnnotationAssertion( "GO:0061660") AnnotationAssertion(rdfs:label "Atg12 ligase activity") SubClassOf( ) @@ -99884,7 +103751,7 @@ SubClassOf( (secretory granule maturation) -AnnotationAssertion(Annotation( "GOC:PARL") Annotation( "GOC:bf") Annotation( "GOC:dph") Annotation( "PMID:16618809") "Steps required to transform an immature secretory vesicle into a mature secretory vesicle. Typically proceeds through homotypic membrane fusion and membrane remodelling.") +AnnotationAssertion(Annotation( "GOC:PARL") Annotation( "GOC:bf") Annotation( "GOC:dph") Annotation( "PMID:16618809") "Steps required to transform an immature secretory vesicle into a mature secretory vesicle. Typically proceeds through homotypic membrane fusion and membrane remodeling.") AnnotationAssertion( "dph") AnnotationAssertion( "2016-09-09T13:24:34Z") AnnotationAssertion( "biological_process") @@ -100050,6 +103917,16 @@ AnnotationAssertion( "process utilizing autophagic mechanism") SubClassOf( ) +# Class: (regulation of adenine biosynthetic process) + +AnnotationAssertion(Annotation( "PMID:19933844") "Any process that modulates the frequency, rate or extent of an adenine biosynthetic process.") +AnnotationAssertion( "dph") +AnnotationAssertion( "2017-09-05T14:58:46Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0061934") +AnnotationAssertion(rdfs:label "regulation of adenine biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (protein localization to somatodendritic compartment) AnnotationAssertion(Annotation( "PMID:18341993") "A process in which a protein is transported to or maintained in a location within the somatodendritic compartment.") @@ -100175,7 +104052,6 @@ AnnotationAssertion( "GO:0062014") AnnotationAssertion(rdfs:label "negative regulation of small molecule metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (collagen-containing extracellular matrix) @@ -100287,6 +104163,16 @@ AnnotationAssertion( "negative regulation of somatic muscle development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (ionocyte differentiation) + +AnnotationAssertion(Annotation( "PMID:17555741") "The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of an ionocyte. Ionocytes are specialized epithelial cells that contribute to osmotic homeostasis.") +AnnotationAssertion( "dph") +AnnotationAssertion( "2020-04-20T12:30:35Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0062236") +AnnotationAssertion(rdfs:label "ionocyte differentiation") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (protein localization to postsynapse) AnnotationAssertion(Annotation( "PMID:31189538") "Any process in which a protein is transported to, and/or maintained at the postsynapse, the part of a synapse that is part of the post-synaptic cell.") @@ -100379,7 +104265,6 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of molecular function") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -101742,6 +105627,18 @@ AnnotationAssertion( "cellular response to alkaloid") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (cellular response to ATP) + +AnnotationAssertion(Annotation( "GOC:mah") "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus.") +AnnotationAssertion( "mah") +AnnotationAssertion( "2009-12-10T05:09:47Z") +AnnotationAssertion(Annotation( "GOC:mah") "cellular response to adenosine 5'-triphosphate") +AnnotationAssertion(Annotation( "GOC:mah") "cellular response to adenosine triphosphate") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0071318") +AnnotationAssertion(rdfs:label "cellular response to ATP") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (cellular response to carbohydrate stimulus) AnnotationAssertion(Annotation( "GOC:mah") "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus.") @@ -102743,7 +106640,7 @@ AnnotationAssertion( "2010-09-15T03:08:35Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0071900") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of protein serine/threonine kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -102754,7 +106651,7 @@ AnnotationAssertion( "2010-09-15T03:09:43Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0071901") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of protein serine/threonine kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -102765,7 +106662,7 @@ AnnotationAssertion( "2010-09-15T03:09:57Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0071902") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of protein serine/threonine kinase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -105543,6 +109440,62 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (purine-containing compound metabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "The chemical reactions and pathways involving a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof.") +AnnotationAssertion( "mah") +AnnotationAssertion( "2011-01-04T03:03:59Z") +AnnotationAssertion( "purine and derivative metabolic process") +AnnotationAssertion(Annotation( "GOC:mah") "purine-containing compound metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0072521") +AnnotationAssertion(rdfs:label "purine-containing compound metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (purine-containing compound biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:mah") "The chemical reactions and pathways resulting in the formation of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof.") +AnnotationAssertion( "mah") +AnnotationAssertion( "2011-01-04T03:15:29Z") +AnnotationAssertion( "purine and derivative biosynthetic process") +AnnotationAssertion(Annotation( "GOC:mah") "purine-containing compound anabolism") +AnnotationAssertion(Annotation( "GOC:mah") "purine-containing compound biosynthesis") +AnnotationAssertion(Annotation( "GOC:mah") "purine-containing compound formation") +AnnotationAssertion(Annotation( "GOC:mah") "purine-containing compound synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0072522") +AnnotationAssertion(rdfs:label "purine-containing compound biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (purine-containing compound catabolic process) + +AnnotationAssertion(Annotation( "GOC:mah") "The chemical reactions and pathways resulting in the breakdown of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof.") +AnnotationAssertion( "mah") +AnnotationAssertion( "2011-01-04T03:17:20Z") +AnnotationAssertion( "purine and derivative catabolic process") +AnnotationAssertion(Annotation( "GOC:mah") "purine-containing compound breakdown") +AnnotationAssertion(Annotation( "GOC:mah") "purine-containing compound catabolism") +AnnotationAssertion(Annotation( "GOC:mah") "purine-containing compound degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0072523") +AnnotationAssertion(rdfs:label "purine-containing compound catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (purine-containing compound transmembrane transport) + +AnnotationAssertion(Annotation( "GOC:mah") "The process in which a purine-containing compound is transported across a membrane. A purine-containing compound is any compound that contains purine or a formal derivative thereof.") +AnnotationAssertion( "mah") +AnnotationAssertion( "2011-01-05T01:45:14Z") +AnnotationAssertion( "purine-containing compound membrane transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0072530") +AnnotationAssertion(rdfs:comment "Note that this term is not intended for use in annotating lateral movement within membranes.") +AnnotationAssertion(rdfs:label "purine-containing compound transmembrane transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (fibroblast activation) AnnotationAssertion(Annotation( "CL:0000057") Annotation( "GOC:BHF") Annotation( "GOC:mah") "A change in the morphology or behavior of a fibroblast resulting from exposure to an activating factor such as a cellular or soluble ligand.") @@ -108854,8 +112807,8 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:dos") "Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity involved in synaptic transmission. Modulation may be via an effect on ligand affinity, or effector funtion such as ion selectivity or pore opening/closing in ionotropic receptors.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0098962") +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of postsynaptic neurotransmitter receptor activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -109639,8 +113592,8 @@ SubClassOf( "GOC:dos") "Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity. Modulation may be via an effect on ligand affinity, or effector funtion such as ion selectivity or pore opening/closing in ionotropic receptors.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0099601") +AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of neurotransmitter receptor activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -110125,7 +114078,7 @@ AnnotationAssertion( "2018-07-06T18:53:55Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0110112") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of lipid transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -110137,7 +114090,7 @@ AnnotationAssertion( "2018-07-06T19:14:13Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0110113") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of lipid transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -110149,7 +114102,7 @@ AnnotationAssertion( "2018-07-06T19:21:44Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0110114") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of lipid transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -111393,6 +115346,28 @@ AnnotationAssertion( "multicellular organismal-level chemical homeostasis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (intracellular nucleotide homeostasis) + +AnnotationAssertion(Annotation( "PMID:23416111") Annotation( "PMID:34880500") "A homeostatic process involved in the maintenance of a steady state level of nucleotides within a cell.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24665"^^xsd:anyURI) +AnnotationAssertion( "pg") +AnnotationAssertion( "2023-01-10T14:13:19Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0140979") +AnnotationAssertion(rdfs:label "intracellular nucleotide homeostasis") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (intracellular nucleoside homeostasis) + +AnnotationAssertion(Annotation( "PMID:23416111") Annotation( "PMID:34880500") "A homeostatic process involved in the maintenance of a steady state level of nucleosides within a cell.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/24665"^^xsd:anyURI) +AnnotationAssertion( "pg") +AnnotationAssertion( "2023-01-10T14:14:42Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0140980") +AnnotationAssertion(rdfs:label "intracellular nucleoside homeostasis") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of protein localization to lysosome) AnnotationAssertion(Annotation( "GOC:aruk") Annotation( "GOC:bc") Annotation( "PMID:24305806") "Any process that modulates the frequency, rate or extent of protein localization to lysosome.") @@ -112053,7 +116028,7 @@ AnnotationAssertion( AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of receptor ligand") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900120") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of receptor binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -112070,7 +116045,7 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of receptor-associated protein activity") AnnotationAssertion( "GO:1900121") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of receptor binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -112084,7 +116059,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of receptor binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900122") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of receptor binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -112180,7 +116155,7 @@ AnnotationAssertion( "2012-02-23T04:05:03Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900130") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of lipid binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -112195,7 +116170,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of lipid binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900131") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of lipid binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -112210,7 +116185,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of lipid binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1900132") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of lipid binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -113065,6 +117040,88 @@ AnnotationAssertion( "positive regulation of defense response to insect") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (regulation of purine nucleotide biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:go_curators") "Any process that modulates the frequency, rate or extent of purine nucleotide biosynthetic processes.") +AnnotationAssertion( "krc") +AnnotationAssertion( "2012-04-17T12:32:07Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of purine nucleotide synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1900371") +AnnotationAssertion(rdfs:label "regulation of purine nucleotide biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of purine nucleotide biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:go_curators") "Any process that stops, prevents or reduces the frequency, rate or extent of purine nucleotide biosynthetic processes.") +AnnotationAssertion( "krc") +AnnotationAssertion( "2012-04-17T12:32:27Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of purine nucleotide biosynthetic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of purine nucleotide synthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of purine nucleotide biosynthetic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of purine nucleotide synthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of purine nucleotide biosynthetic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of purine nucleotide synthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of purine nucleotide synthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of purine nucleotide synthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of purine nucleotide biosynthetic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1900372") +AnnotationAssertion(rdfs:label "negative regulation of purine nucleotide biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of purine nucleotide biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:go_curators") "Any process that activates or increases the frequency, rate or extent of purine nucleotide biosynthetic processes.") +AnnotationAssertion( "krc") +AnnotationAssertion( "2012-04-17T12:32:37Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of purine nucleotide synthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of purine nucleotide synthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of purine nucleotide biosynthetic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of purine nucleotide synthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of purine nucleotide biosynthetic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of purine nucleotide synthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of purine nucleotide anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of purine nucleotide biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of purine nucleotide biosynthetic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of purine nucleotide formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of purine nucleotide synthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of purine nucleotide biosynthetic process") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1900373") +AnnotationAssertion(rdfs:label "positive regulation of purine nucleotide biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of secondary metabolite biosynthetic process) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:di") "Any process that modulates the frequency, rate or extent of secondary metabolite biosynthetic process.") @@ -113314,6 +117371,77 @@ AnnotationAssertion( "positive regulation of glutamate receptor signaling pathway") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (regulation of purine nucleotide metabolic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that modulates the frequency, rate or extent of purine nucleotide metabolic process.") +AnnotationAssertion( "krc") +AnnotationAssertion( "2012-05-11T05:43:15Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of purine metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1900542") +AnnotationAssertion(rdfs:label "regulation of purine nucleotide metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of purine nucleotide metabolic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that stops, prevents or reduces the frequency, rate or extent of purine nucleotide metabolic process.") +AnnotationAssertion( "krc") +AnnotationAssertion( "2012-05-11T05:44:21Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of purine nucleotide metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of purine nucleotide metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of purine nucleotide metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of purine metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of purine metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of purine metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of purine metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of purine nucleotide metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of purine metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1900543") +AnnotationAssertion(rdfs:label "negative regulation of purine nucleotide metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of purine nucleotide metabolic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that activates or increases the frequency, rate or extent of purine nucleotide metabolic process.") +AnnotationAssertion( "krc") +AnnotationAssertion( "2012-05-11T05:44:43Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of purine nucleotide metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of purine nucleotide metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of purine nucleotide metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of purine metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of purine nucleotide metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of purine nucleotide metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of purine metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of purine metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of purine metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of purine metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of purine metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1900544") +AnnotationAssertion(rdfs:label "positive regulation of purine nucleotide metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (acetate ester metabolic process) AnnotationAssertion(Annotation( "GOC:TermGenie") "The chemical reactions and pathways involving an acetate ester, any carboxylic ester where the carboxylic acid component is acetic acid.") @@ -113365,7 +117493,7 @@ AnnotationAssertion( "2012-06-15T07:54:12Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1901019") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of calcium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -113381,7 +117509,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of calcium ion transmembrane transporter activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1901020") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of calcium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -113397,7 +117525,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of calcium ion transmembrane transporter activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1901021") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of calcium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -114027,6 +118155,43 @@ AnnotationAssertion(rdfs:label "carb EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (nucleoside phosphate binding) + +AnnotationAssertion(Annotation( "GOC:TermGenie") "Binding to nucleoside phosphate.") +AnnotationAssertion( "bf") +AnnotationAssertion( "2012-08-17T12:59:58Z") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:1901265") +AnnotationAssertion(rdfs:label "nucleoside phosphate binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside phosphate catabolic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") "The chemical reactions and pathways resulting in the breakdown of a nucleoside phosphate.") +AnnotationAssertion( "bf") +AnnotationAssertion( "2012-08-20T12:33:25Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "nucleoside phosphate breakdown") +AnnotationAssertion(Annotation( "GOC:TermGenie") "nucleoside phosphate catabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "nucleoside phosphate degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1901292") +AnnotationAssertion(rdfs:label "nucleoside phosphate catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleoside phosphate biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") "The chemical reactions and pathways resulting in the formation of a nucleoside phosphate.") +AnnotationAssertion( "bf") +AnnotationAssertion( "2012-08-20T12:33:45Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "nucleoside phosphate anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "nucleoside phosphate biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "nucleoside phosphate formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "nucleoside phosphate synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1901293") +AnnotationAssertion(rdfs:label "nucleoside phosphate biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of flagellated sperm motility) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:cilia") Annotation( "GOC:krc") "Any process that modulates the frequency, rate or extent of flagellated sperm motility.") @@ -115268,6 +119433,18 @@ AnnotationAssertion( "positive regulation of postsynaptic membrane organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (nucleoside transmembrane transport) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "The directed movement of nucleoside across a membrane.") +AnnotationAssertion( "pr") +AnnotationAssertion( "2012-11-16T13:32:01Z") +AnnotationAssertion( "nucleoside membrane transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1901642") +AnnotationAssertion(rdfs:comment "Note that this term is not intended for use in annotating lateral movement within membranes.") +AnnotationAssertion(rdfs:label "nucleoside transmembrane transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (regulation of synoviocyte proliferation) AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that modulates the frequency, rate or extent of synoviocyte proliferation.") @@ -115349,6 +119526,56 @@ AnnotationAssertion( "cellular response to ketone") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (glycosyl compound metabolic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "The chemical reactions and pathways involving glycosyl compound.") +AnnotationAssertion( "pr") +AnnotationAssertion( "2012-11-20T14:24:07Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "glycosyl compound metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1901657") +AnnotationAssertion(rdfs:label "glycosyl compound metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (glycosyl compound catabolic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "The chemical reactions and pathways resulting in the breakdown of glycosyl compound.") +AnnotationAssertion( "pr") +AnnotationAssertion( "2012-11-20T14:24:11Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "glycosyl compound breakdown") +AnnotationAssertion(Annotation( "GOC:TermGenie") "glycosyl compound catabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "glycosyl compound degradation") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1901658") +AnnotationAssertion(rdfs:label "glycosyl compound catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (glycosyl compound biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "The chemical reactions and pathways resulting in the formation of glycosyl compound.") +AnnotationAssertion( "pr") +AnnotationAssertion( "2012-11-20T14:24:19Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "glycosyl compound anabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "glycosyl compound biosynthesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "glycosyl compound formation") +AnnotationAssertion(Annotation( "GOC:TermGenie") "glycosyl compound synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1901659") +AnnotationAssertion(rdfs:label "glycosyl compound biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleotide transmembrane transport) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "The directed movement of nucleotide across a membrane.") +AnnotationAssertion( "pr") +AnnotationAssertion( "2012-11-22T15:43:23Z") +AnnotationAssertion( "nucleotide membrane transport") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1901679") +AnnotationAssertion(rdfs:comment "Note that this term is not intended for use in annotating lateral movement within membranes.") +AnnotationAssertion(rdfs:label "nucleotide transmembrane transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (sulfur compound binding) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "Binding to a sulfur compound.") @@ -115774,7 +120001,7 @@ AnnotationAssertion( AnnotationAssertion( "biological_process") AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of calcium ion storage activity") AnnotationAssertion( "GO:1901876") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of calcium ion binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -115794,7 +120021,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of calcium ion storage activity") AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of calcium ion storage activity") AnnotationAssertion( "GO:1901877") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of calcium ion binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -115814,7 +120041,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of calcium ion storage activity") AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of calcium ion storage activity") AnnotationAssertion( "GO:1901878") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of calcium ion binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -117571,6 +121798,36 @@ AnnotationAssertion( "regulation of neuroblast proliferation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (pentose catabolic process to butyrate) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:mengo_curators") Annotation( "GO_REF:0000093") Annotation( "PMID:18727018") Annotation( "PMID:19539744") "The chemical reactions and pathways resulting in the breakdown of pentose to butyrate.") +AnnotationAssertion( "tb") +AnnotationAssertion( "2014-02-19T18:28:28Z") +AnnotationAssertion( "GO:1990288") +AnnotationAssertion(Annotation( "GOC:tt") "acidogenesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose breakdown to butyrate") +AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose catabolism to butyrate") +AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose degradation to butyrate") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1902698") +AnnotationAssertion(rdfs:label "pentose catabolic process to butyrate") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + +# Class: (pentose catabolic process to acetate) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:mengo_curators") Annotation( "GO_REF:0000093") Annotation( "PMID:18727018") Annotation( "PMID:19539744") "The chemical reactions and pathways resulting in the breakdown of pentose to acetate.") +AnnotationAssertion( "tb") +AnnotationAssertion( "2014-02-19T18:28:38Z") +AnnotationAssertion( "GO:1990289") +AnnotationAssertion(Annotation( "GOC:tt") "acidogenesis") +AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose breakdown to acetate") +AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose catabolism to acetate") +AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose degradation to acetate") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1902699") +AnnotationAssertion(rdfs:label "pentose catabolic process to acetate") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (GABA receptor complex) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:bhm") Annotation( "GO_REF:0000088") Annotation( "PMID:18790874") "A protein complex which is capable of GABA receptor activity. Upon binding of gamma-aminobutyric acid (GABA) it transmits the signal from one side of the membrane to the other to initiate a change in cell activity. Major inhibitory receptor in vertebrate brain. Also found in other vertebrate tissues, invertebrates and possibly in plants. Effective benzodiazepine receptor.") @@ -120496,6 +124753,55 @@ AnnotationAssertion( "positive regulation of protein localization to ciliary membrane") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (regulation of ATP metabolic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:20695849") "Any process that modulates the frequency, rate or extent of ATP metabolic process.") +AnnotationAssertion( "sl") +AnnotationAssertion( "2014-10-30T19:04:24Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of ATP metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1903578") +AnnotationAssertion(rdfs:label "regulation of ATP metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of ATP metabolic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:20695849") "Any process that stops, prevents or reduces the frequency, rate or extent of ATP metabolic process.") +AnnotationAssertion( "sl") +AnnotationAssertion( "2014-10-30T19:04:33Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of ATP metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of ATP metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of ATP metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of ATP metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of ATP metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of ATP metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of ATP metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of ATP metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of ATP metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1903579") +AnnotationAssertion(rdfs:label "negative regulation of ATP metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of ATP metabolic process) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:20695849") "Any process that activates or increases the frequency, rate or extent of ATP metabolic process.") +AnnotationAssertion( "sl") +AnnotationAssertion( "2014-10-30T19:04:42Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "positive regulation of ATP metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of ATP metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of ATP metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of ATP metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of ATP metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of ATP metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of ATP metabolism") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of ATP metabolic process") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of ATP metabolism") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1903580") +AnnotationAssertion(rdfs:label "positive regulation of ATP metabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of DNA catabolic process) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:2001740") "Any process that modulates the frequency, rate or extent of DNA catabolic process.") @@ -122442,7 +126748,7 @@ AnnotationAssertion( "GOC:TermGenie") "regulation of iron-specific channel activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1904254") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of iron ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -122469,7 +126775,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of iron-specific channel activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1904255") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of iron ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -122497,7 +126803,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of iron-specific channel activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1904256") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of iron ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -123286,7 +127592,7 @@ AnnotationAssertion( "GOC:TermGenie") "regulation of microtubule severing activity") AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of microtubule/chromatin interaction") AnnotationAssertion( "GO:1904526") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of microtubule binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -123311,7 +127617,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of microtubule severing activity") AnnotationAssertion(Annotation( "GOC:TermGenie") "negative regulation of microtubule/chromatin interaction") AnnotationAssertion( "GO:1904527") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of microtubule binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -123336,7 +127642,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of microtubule severing activity") AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of microtubule/chromatin interaction") AnnotationAssertion( "GO:1904528") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of microtubule binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -124599,7 +128905,7 @@ AnnotationAssertion( "2015-11-09T11:43:04Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1904793") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of euchromatin binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -124614,7 +128920,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of euchromatin binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1904794") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of euchromatin binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -124629,7 +128935,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of euchromatin binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1904795") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of euchromatin binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -124680,6 +128986,16 @@ AnnotationAssertion( "peritoneum development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (purine nucleobase transmembrane transport) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000069") "The process in which a purine nucleobase is transported across a membrane.") +AnnotationAssertion( "vw") +AnnotationAssertion( "2015-11-19T09:07:56Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1904823") +AnnotationAssertion(rdfs:label "purine nucleobase transmembrane transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (regulation of aortic smooth muscle cell differentiation) AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:BHF_miRNA") Annotation( "GOC:TermGenie") Annotation( "GOC:rph") Annotation( "GO_REF:0000058") Annotation( "PMID:22034194") "Any process that modulates the frequency, rate or extent of aortic smooth muscle cell differentiation.") @@ -125998,7 +130314,7 @@ AnnotationAssertion( "2016-06-06T10:20:56Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1905214") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of RNA binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -126013,7 +130329,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of RNA binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1905215") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of RNA binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -126028,7 +130344,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of RNA binding") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1905216") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of RNA binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -126656,19 +130972,6 @@ AnnotationAssertion( "pericyte cell migration") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (peptidase complex) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:bhm") Annotation( "GO_REF:0000088") Annotation( "PMID:1689240") "A protein complex which is capable of peptidase activity.") -AnnotationAssertion( "bhm") -AnnotationAssertion( "2016-08-16T12:49:36Z") -AnnotationAssertion( "protease complex") -AnnotationAssertion( "tryptase complex") -AnnotationAssertion( "cellular_component") -AnnotationAssertion( "GO:1905368") -AnnotationAssertion(rdfs:comment "An example of this is PLAU in human (UniProt symbol P00749) in PMID:1689240 (inferred from direct assay).") -AnnotationAssertion(rdfs:label "peptidase complex") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (protein localization to presynapse) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000087") Annotation( "PMID:24449494") "A process in which a protein is transported to, or maintained in, a location within a presynapse.") @@ -130409,7 +134712,7 @@ AnnotationAssertion( "negative regulation of signalling receptor activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:2000272") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of signaling receptor activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -130423,7 +134726,7 @@ AnnotationAssertion( AnnotationAssertion( "positive regulation of signalling receptor activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:2000273") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of signaling receptor activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -131451,7 +135754,7 @@ AnnotationAssertion( AnnotationAssertion(Annotation( "GOC:obol") "regulation of sodium transporter activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:2000649") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of sodium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -131464,7 +135767,7 @@ AnnotationAssertion( AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of sodium transporter activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:2000650") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of sodium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -131477,7 +135780,7 @@ AnnotationAssertion( AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of sodium transporter activity") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:2000651") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of sodium ion transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "https://github.com/geneontology/go-ontology/issues/13926") ObjectSomeValuesFrom( )) @@ -131509,7 +135812,7 @@ AnnotationAssertion( "2011-05-02T05:33:41Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:2000656") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of apolipoprotein binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -131520,7 +135823,7 @@ AnnotationAssertion( "2011-05-02T05:33:44Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:2000657") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "negative regulation of apolipoprotein binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -131531,7 +135834,7 @@ AnnotationAssertion( "2011-05-02T05:33:46Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:2000658") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "positive regulation of apolipoprotein binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -132754,6 +137057,51 @@ SubClassOf( ) SubClassOf( ) +# Class: (regulation of ATP biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of ATP biosynthetic process.") +AnnotationAssertion( "kmv") +AnnotationAssertion( "2011-10-26T03:18:03Z") +AnnotationAssertion(Annotation( "GOC:obol") "regulation of ATP anabolism") +AnnotationAssertion(Annotation( "GOC:obol") "regulation of ATP biosynthesis") +AnnotationAssertion(Annotation( "GOC:obol") "regulation of ATP formation") +AnnotationAssertion(Annotation( "GOC:obol") "regulation of ATP synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:obol") "regulation of ATP regeneration") +AnnotationAssertion( "GO:2001169") +AnnotationAssertion(rdfs:label "regulation of ATP biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of ATP biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:obol") "Any process that stops, prevents or reduces the frequency, rate or extent of ATP biosynthetic process.") +AnnotationAssertion( "kmv") +AnnotationAssertion( "2011-10-26T03:18:13Z") +AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of ATP anabolism") +AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of ATP biosynthesis") +AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of ATP formation") +AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of ATP synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:obol") "negative regulation of ATP regeneration") +AnnotationAssertion( "GO:2001170") +AnnotationAssertion(rdfs:label "negative regulation of ATP biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of ATP biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:obol") "Any process that activates or increases the frequency, rate or extent of ATP biosynthetic process.") +AnnotationAssertion( "kmv") +AnnotationAssertion( "2011-10-26T03:18:26Z") +AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of ATP anabolism") +AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of ATP biosynthesis") +AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of ATP formation") +AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of ATP synthesis") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:obol") "positive regulation of ATP regeneration") +AnnotationAssertion( "GO:2001171") +AnnotationAssertion(rdfs:label "positive regulation of ATP biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of dendritic cell differentiation) AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of dendritic cell differentiation.") @@ -132957,6 +137305,18 @@ AnnotationAssertion( "positive regulation of chromosome organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (curation status specification) + +AnnotationAssertion( "curation status specification"@en) +AnnotationAssertion( ) +AnnotationAssertion( "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en) +AnnotationAssertion( "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)"@en) +AnnotationAssertion( "PERSON:Bill Bug"@en) +AnnotationAssertion( "GROUP:OBI:"@en) +AnnotationAssertion( "OBI_0000266"@en) +AnnotationAssertion(rdfs:label "curation status specification"@en) +EquivalentClasses( ObjectOneOf( )) + # Class: (body part movement) AnnotationAssertion( "A change of place or position of part of an organism that does not involve the entire organism [NBO:SMAC]") @@ -133345,6 +137705,7 @@ AnnotationAssertion( ) "all") AnnotationAssertion( "NCBITaxon:1") AnnotationAssertion(rdfs:label "root") +SubClassOf( ) # Class: (Gerbillinae) @@ -134309,6 +138670,8 @@ AnnotationAssertion( "PMID:12054223") AnnotationAssertion( "PMID:2112744") AnnotationAssertion( "PMID:270744") +AnnotationAssertion( "PMID:32628106") +AnnotationAssertion( "PMID:36748408") AnnotationAssertion( "PMID:7520741") AnnotationAssertion( "PMID:8123559") AnnotationAssertion( "PMID:8186100") @@ -134392,6 +138755,8 @@ AnnotationAssertion( "PMID:2112744") AnnotationAssertion( "PMID:25527841") AnnotationAssertion( "PMID:270744") +AnnotationAssertion( "PMID:32628106") +AnnotationAssertion( "PMID:36748408") AnnotationAssertion( "PMID:8123559") AnnotationAssertion( "PMID:8590690") AnnotationAssertion( "PMID:9103655") @@ -136830,7 +141195,7 @@ AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "elasmobranchs") AnnotationAssertion( "ncbi_taxonomy") -AnnotationAssertion(Annotation( ) "sharks and rays") +AnnotationAssertion(Annotation( ) "sharks & rays") AnnotationAssertion( "NCBITaxon:7778") AnnotationAssertion(rdfs:label "Elasmobranchii") SubClassOf( ) @@ -146231,6 +150596,207 @@ AnnotationAssertion( "system") SubClassOf( ) +# Class: (anatomical structure) + +AnnotationAssertion(Annotation( "CARO:0000003") "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "AAO:0010825") +AnnotationAssertion( "AEO:0000003") +AnnotationAssertion( "BILA:0000003") +AnnotationAssertion( "CARO:0000003") +AnnotationAssertion( "EHDAA2:0003003") +AnnotationAssertion( "EMAPA:0") +AnnotationAssertion( "FBbt:00007001") +AnnotationAssertion( "FMA:305751") +AnnotationAssertion( "FMA:67135") +AnnotationAssertion( "GAID:781") +AnnotationAssertion( "HAO:0000003") +AnnotationAssertion( "MA:0003000") +AnnotationAssertion( "MESH:D000825") +AnnotationAssertion( "SCTID:362889002") +AnnotationAssertion( "TAO:0000037") +AnnotationAssertion( "TGMA:0001823") +AnnotationAssertion( "VHOG:0001759") +AnnotationAssertion( "XAO:0003000") +AnnotationAssertion( "ZFA:0000037") +AnnotationAssertion( "http://dbpedia.org/ontology/AnatomicalStructure") +AnnotationAssertion( "biological structure") +AnnotationAssertion(Annotation( "CARO:0000003") "connected biological structure") +AnnotationAssertion( "UBERON:0000061") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "anatomical structure") +SubClassOf( ) + +# Class: (neuron projection bundle) + +AnnotationAssertion(Annotation( "CARO:0001001") Annotation( "FBC:DOS") Annotation( "FBbt:00005099") "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses.") +AnnotationAssertion( "CARO:0001001") +AnnotationAssertion( "FBbt:00005099") +AnnotationAssertion( "NLX:147821") +AnnotationAssertion( "funiculus") +AnnotationAssertion(Annotation( "FBbt:00005099") "nerve fiber bundle") +AnnotationAssertion( "neural fiber bundle") +AnnotationAssertion( "UBERON:0000122") +AnnotationAssertion(rdfs:label "neuron projection bundle") +SubClassOf( ) + +# Class: (material anatomical entity) + +AnnotationAssertion(Annotation( "http://orcid.org/0000-0001-9114-8737") "Anatomical entity that has mass.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "AAO:0010264") +AnnotationAssertion( "AEO:0000006") +AnnotationAssertion( "BILA:0000006") +AnnotationAssertion( "CARO:0000006") +AnnotationAssertion( "EHDAA2:0003006") +AnnotationAssertion( "FBbt:00007016") +AnnotationAssertion( "FMA:67165") +AnnotationAssertion( "HAO:0000006") +AnnotationAssertion( "TAO:0001836") +AnnotationAssertion( "TGMA:0001826") +AnnotationAssertion( "VHOG:0001721") +AnnotationAssertion( "UBERON:0000465") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "material anatomical entity") +SubClassOf( ) +SubClassOf( ) +DisjointClasses( ) + +# Class: (immaterial anatomical entity) + +AnnotationAssertion(Annotation( "http://orcid.org/0000-0001-9114-8737") "Anatomical entity that has no mass.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "AAO:0010265") +AnnotationAssertion( "AEO:0000007") +AnnotationAssertion( "BILA:0000007") +AnnotationAssertion( "CARO:0000007") +AnnotationAssertion( "EHDAA2:0003007") +AnnotationAssertion( "FBbt:00007015") +AnnotationAssertion( "FMA:67112") +AnnotationAssertion( "HAO:0000007") +AnnotationAssertion( "TAO:0001835") +AnnotationAssertion( "TGMA:0001827") +AnnotationAssertion( "VHOG:0001727") +AnnotationAssertion(Annotation( "FMA:67112") "immaterial physical anatomical entity") +AnnotationAssertion( "UBERON:0000466") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "immaterial anatomical entity") +SubClassOf( ) +SubClassOf( ) + +# Class: (anatomical entity) + +AnnotationAssertion(Annotation( "FMA:62955") Annotation( "http://orcid.org/0000-0001-9114-8737") "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "AAO:0010841") +AnnotationAssertion( "AEO:0000000") +AnnotationAssertion( "BILA:0000000") +AnnotationAssertion( "BIRNLEX:6") +AnnotationAssertion( "CARO:0000000") +AnnotationAssertion( "EHDAA2:0002229") +AnnotationAssertion( "FBbt:10000000") +AnnotationAssertion( "FMA:62955") +AnnotationAssertion( "HAO:0000000") +AnnotationAssertion( "MA:0000001") +AnnotationAssertion( "NCIT:C12219") +AnnotationAssertion( "TAO:0100000") +AnnotationAssertion( "TGMA:0001822") +AnnotationAssertion(Annotation( "ncithesaurus:Anatomic_Structure_System_or_Substance") "UMLS:C1515976") +AnnotationAssertion( "WBbt:0000100") +AnnotationAssertion( "XAO:0000000") +AnnotationAssertion( "ZFA:0100000") +AnnotationAssertion( "UBERON:0001062") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "anatomical entity") +SubClassOf( ) + +# Class: (multicellular anatomical structure) + +AnnotationAssertion(Annotation( "CARO:0010000") "An anatomical structure that has more than one cell as a part.") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "CARO:0010000") +AnnotationAssertion( "FBbt:00100313") +AnnotationAssertion(Annotation( "FBbt:00100313") "multicellular structure") +AnnotationAssertion( "UBERON:0010000") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "multicellular anatomical structure") +SubClassOf( ) + + +############################ +# Named Individuals +############################ + +# Individual: (example to be eventually removed) + +AnnotationAssertion( "example to be eventually removed"@en) +AnnotationAssertion(rdfs:label "example to be eventually removed"@en) + +# Individual: (metadata complete) + +AnnotationAssertion( "metadata complete"@en) +AnnotationAssertion( "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete."@en) +AnnotationAssertion(rdfs:label "metadata complete"@en) + +# Individual: (organizational term) + +AnnotationAssertion( "organizational term"@en) +AnnotationAssertion( "Term created to ease viewing/sort terms for development purpose, and will not be included in a release"@en) +AnnotationAssertion(rdfs:label "organizational term"@en) + +# Individual: (ready for release) + +AnnotationAssertion( "ready for release"@en) +AnnotationAssertion( ) +AnnotationAssertion( "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\""@en) +AnnotationAssertion(rdfs:label "ready for release"@en) + +# Individual: (metadata incomplete) + +AnnotationAssertion( "metadata incomplete"@en) +AnnotationAssertion( "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors."@en) +AnnotationAssertion(rdfs:label "metadata incomplete"@en) + +# Individual: (uncurated) + +AnnotationAssertion( "uncurated"@en) +AnnotationAssertion( "Nothing done yet beyond assigning a unique class ID and proposing a preferred term."@en) +AnnotationAssertion(rdfs:label "uncurated"@en) + +# Individual: (pending final vetting) + +AnnotationAssertion( "pending final vetting"@en) +AnnotationAssertion( ) +AnnotationAssertion( "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor."@en) +AnnotationAssertion(rdfs:label "pending final vetting"@en) + +# Individual: (to be replaced with external ontology term) + +AnnotationAssertion( "to be replaced with external ontology term"@en) +AnnotationAssertion( "Terms with this status should eventually replaced with a term from another ontology."@en) +AnnotationAssertion( "Alan Ruttenberg"@en) +AnnotationAssertion( "group:OBI"@en) +AnnotationAssertion(rdfs:label "to be replaced with external ontology term"@en) + +# Individual: (requires discussion) + +AnnotationAssertion( "requires discussion"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues."@en) +AnnotationAssertion( "Alan Ruttenberg"@en) +AnnotationAssertion( "group:OBI"@en) +AnnotationAssertion(rdfs:label "requires discussion"@en) + EquivalentClasses(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectIntersectionOf( ObjectMinCardinality(2 ))) EquivalentClasses(ObjectIntersectionOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -146370,17 +150936,27 @@ DLSafeRule(Annotation(rdfs:comment "This can't be added as a property chain beca DLSafeRule(Annotation(rdfs:comment "If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.") Annotation(rdfs:label "inferring direct reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Annotation(rdfs:label "inferring direct neg reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Annotation(rdfs:label "inferring direct positive reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "effector input is compound function input") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "Input of effector is input of its parent MF") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "if effector directly regulates X, its parent MF directly regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "if effector directly positively regulates X, its parent MF directly positively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "if effector directly negatively regulates X, its parent MF directly negatively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) -DLSafeRule(Annotation(rdfs:label "'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "effector input is compound function input") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "Input of effector is input of its parent MF") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "if effector directly regulates X, its parent MF directly regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "if effector directly positively regulates X, its parent MF directly positively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "if effector directly negatively regulates X, its parent MF directly negatively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) +DLSafeRule(Annotation(rdfs:label "'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Shawn Zheng Kai Tan") +AnnotationAssertion(Annotation( ) "data scientist") +AnnotationAssertion(Annotation( ) rdfs:label "Anne Thessen") +AnnotationAssertion(Annotation( ) "bioinformatics researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Christopher J. Mungall") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "David Osumi-Sutherland") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "James P. Balhoff") ) \ No newline at end of file diff --git a/src/ontology/imports/ro_terms.txt b/src/ontology/imports/ro_terms.txt index 93d617774b..468f6bfb95 100644 --- a/src/ontology/imports/ro_terms.txt +++ b/src/ontology/imports/ro_terms.txt @@ -9,3 +9,4 @@ RO:0002171 RO:0002175 RO:0002100 RO:0013001 +RO:0002252 \ No newline at end of file diff --git a/src/ontology/mappings/fbbt-mappings.sssom.tsv b/src/ontology/mappings/fbbt-mappings.sssom.tsv index 803a2a4a66..b92cde7a1e 100644 --- a/src/ontology/mappings/fbbt-mappings.sssom.tsv +++ b/src/ontology/mappings/fbbt-mappings.sssom.tsv @@ -128,11 +128,7 @@ FBbt:00001784 genital disc semapv:crossSpeciesExactMatch UBERON:6001784 semapv:M FBbt:00001785 male genital disc semapv:crossSpeciesExactMatch UBERON:6001785 semapv:ManualMappingCuration FBbt:00001787 female genital disc semapv:crossSpeciesExactMatch UBERON:6001787 semapv:ManualMappingCuration FBbt:00001789 histoblast semapv:crossSpeciesExactMatch CL:0000373 semapv:ManualMappingCuration -FBbt:00001789 histoblast semapv:crossSpeciesExactMatch UBERON:6001789 semapv:ManualMappingCuration FBbt:00001790 histoblast nest semapv:crossSpeciesExactMatch UBERON:6001790 semapv:ManualMappingCuration -FBbt:00001791 dorsal histoblast nest abdominal semapv:crossSpeciesExactMatch UBERON:6001791 semapv:ManualMappingCuration -FBbt:00001792 anterior dorsal histoblast nest abdominal semapv:crossSpeciesExactMatch UBERON:6001792 semapv:ManualMappingCuration -FBbt:00001809 posterior dorsal histoblast nest abdominal semapv:crossSpeciesExactMatch UBERON:6001809 semapv:ManualMappingCuration FBbt:00001842 embryonic/larval digestive system semapv:crossSpeciesExactMatch UBERON:6001842 semapv:ManualMappingCuration FBbt:00001845 cephalopharyngeal skeleton semapv:crossSpeciesExactMatch UBERON:6001845 semapv:ManualMappingCuration FBbt:00001848 epipharyngeal sclerite semapv:crossSpeciesExactMatch UBERON:6001848 semapv:ManualMappingCuration @@ -189,6 +185,7 @@ FBbt:00004475 sclerite semapv:crossSpeciesExactMatch UBERON:6004475 semapv:Manua FBbt:00004476 tergite semapv:crossSpeciesExactMatch UBERON:6004476 semapv:ManualMappingCuration FBbt:00004477 sternite semapv:crossSpeciesExactMatch UBERON:6004477 semapv:ManualMappingCuration FBbt:00004481 adult external head semapv:crossSpeciesExactMatch UBERON:6004481 semapv:ManualMappingCuration +FBbt:00004482 head capsule semapv:crossSpeciesExactMatch UBERON:0003153 semapv:ManualMappingCuration FBbt:00004492 occiput semapv:crossSpeciesExactMatch UBERON:0003155 semapv:ManualMappingCuration FBbt:00004505 ocellus semapv:crossSpeciesExactMatch UBERON:0003161 semapv:ManualMappingCuration FBbt:00004506 lateral ocellus semapv:crossSpeciesExactMatch UBERON:0003162 semapv:ManualMappingCuration @@ -226,7 +223,7 @@ FBbt:00004850 phallus semapv:crossSpeciesExactMatch UBERON:0008811 semapv:Manual FBbt:00004856 organ system semapv:crossSpeciesExactMatch UBERON:0000467 semapv:ManualMappingCuration FBbt:00004857 reproductive system semapv:crossSpeciesExactMatch UBERON:0000990 semapv:ManualMappingCuration FBbt:00004858 gonad semapv:crossSpeciesExactMatch UBERON:0000991 semapv:ManualMappingCuration -FBbt:00004861 germline stem cell semapv:crossSpeciesExactMatch CL:0000086 semapv:ManualMappingCuration +FBbt:00004861 germline stem cell semapv:crossSpeciesExactMatch CL:0000014 semapv:ManualMappingCuration FBbt:00004864 female reproductive system semapv:crossSpeciesExactMatch UBERON:0000474 semapv:ManualMappingCuration FBbt:00004865 ovary semapv:crossSpeciesExactMatch UBERON:0000992 semapv:ManualMappingCuration FBbt:00004873 female germline stem cell semapv:crossSpeciesExactMatch CL:0000022 semapv:ManualMappingCuration @@ -242,7 +239,7 @@ FBbt:00004921 spermathecum semapv:crossSpeciesExactMatch UBERON:0000994 semapv:M FBbt:00004924 uterus semapv:crossSpeciesCloseMatch UBERON:0006834 semapv:ManualMappingCuration FBbt:00004927 male reproductive system semapv:crossSpeciesExactMatch UBERON:0000079 semapv:ManualMappingCuration FBbt:00004928 testis semapv:crossSpeciesExactMatch UBERON:0000473 semapv:ManualMappingCuration -FBbt:00004929 male germline stem cell semapv:crossSpeciesExactMatch CL:0000087 semapv:ManualMappingCuration +FBbt:00004929 male germline stem cell semapv:crossSpeciesExactMatch CL:0000016 semapv:ManualMappingCuration FBbt:00004934 primary gonial cell semapv:crossSpeciesExactMatch CL:0000020 semapv:ManualMappingCuration FBbt:00004935 spermatogonium semapv:crossSpeciesExactMatch CL:0000020 semapv:ManualMappingCuration FBbt:00004936 spermatocyte semapv:crossSpeciesExactMatch CL:0000017 semapv:ManualMappingCuration @@ -265,7 +262,7 @@ FBbt:00005023 imaginal precursor semapv:crossSpeciesExactMatch UBERON:6005023 se FBbt:00005024 tracheal system semapv:crossSpeciesExactMatch UBERON:0005155 semapv:ManualMappingCuration FBbt:00005036 tracheal pit semapv:crossSpeciesExactMatch UBERON:6005036 semapv:ManualMappingCuration FBbt:00005037 tracheal primordium semapv:crossSpeciesExactMatch UBERON:6005037 semapv:ManualMappingCuration -FBbt:00005038 tracheocyte semapv:crossSpeciesExactMatch CL:0000307 semapv:ManualMappingCuration +FBbt:00005038 tracheocyte semapv:crossSpeciesExactMatch CL:0008026 semapv:ManualMappingCuration FBbt:00005043 trachea semapv:crossSpeciesExactMatch UBERON:6005043 semapv:ManualMappingCuration FBbt:00005054 spiracle semapv:crossSpeciesExactMatch UBERON:6005054 semapv:ManualMappingCuration FBbt:00005055 digestive system semapv:crossSpeciesExactMatch UBERON:0001007 semapv:ManualMappingCuration diff --git a/src/ontology/reports/uberon-edit.obo-obo-report.tsv b/src/ontology/reports/uberon-edit.obo-obo-report.tsv index 9c2954a0a0..c17cbebaae 100644 --- a/src/ontology/reports/uberon-edit.obo-obo-report.tsv +++ b/src/ontology/reports/uberon-edit.obo-obo-report.tsv @@ -5257,7 +5257,6 @@ INFO missing_superclass UBERON:0001988 rdfs:subClassOf INFO missing_superclass UBERON:0002004 rdfs:subClassOf INFO missing_superclass UBERON:0002008 rdfs:subClassOf INFO missing_superclass UBERON:0002036 rdfs:subClassOf -INFO missing_superclass UBERON:0002040 rdfs:subClassOf INFO missing_superclass UBERON:0002050 rdfs:subClassOf INFO missing_superclass UBERON:0002056 rdfs:subClassOf INFO missing_superclass UBERON:0002057 rdfs:subClassOf @@ -7704,7 +7703,6 @@ INFO missing_superclass UBERON:0037796 rdfs:subClassOf INFO missing_superclass UBERON:0037797 rdfs:subClassOf INFO missing_superclass UBERON:0037798 rdfs:subClassOf INFO missing_superclass UBERON:0039355 rdfs:subClassOf -INFO missing_superclass UBERON:0039850 rdfs:subClassOf INFO missing_superclass UBERON:1000006 rdfs:subClassOf INFO missing_superclass UBERON:1000015 rdfs:subClassOf INFO missing_superclass UBERON:1000020 rdfs:subClassOf diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 15516fdd84..94154b36e1 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -2648,7 +2648,7 @@ subset: grouping_class subset: non_informative xref: Wikipedia:Sulcus_(anatomy) is_a: UBERON:0000464 ! anatomical space -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall creation_date: 2009-04-09T06:23:22Z [Term] @@ -2660,7 +2660,7 @@ synonym: "membrane of organ" EXACT [] xref: FMA:7145 is_a: UBERON:0000062 ! organ relationship: composed_primarily_of UBERON:0011823 {source="FMA-def"} ! dense connective tissue -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall creation_date: 2009-07-30T05:19:13Z [Term] @@ -2675,7 +2675,7 @@ xref: Wikipedia:Cardiac_neural_crest xref: XAO:0004190 xref: ZFA:0001648 is_a: UBERON:0000479 ! tissue -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall relationship: overlaps UBERON:0005428 {source="Wikipedia"} ! vagal neural crest relationship: part_of UBERON:0002342 ! neural crest property_value: external_definition "A subpopulation of the cephalic neural crest that emerges from the otic level to the anterior limit of somite 4. It migrates to the heart and is essential for the septation of the outflow track[DOI:10.1242/dev.091751]." xsd:string {source="DOI:10.1242/dev.091751"} @@ -2908,11 +2908,14 @@ xref: HsapDv:0000012 xref: MmusDv:0000017 xref: XAO:1000006 is_a: UBERON:0000105 ! life cycle stage +relationship: dubious_for_taxon NCBITaxon:7955 ! Danio rerio relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000109 ! gastrula stage relationship: simultaneous_with GO:0001841 ! neural tube formation +property_value: seeAlso "https://github.com/obophenotype/developmental-stage-ontologies/issues/84" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/343" xsd:anyURI +property_value: taxon_notes "In zebrafish, the times of neurulation and segmentation overlap so extensively there is no distinct neurula period of development, such as occurs largely before segmentation in amphibian embryos." xsd:string [Term] id: UBERON:0000111 @@ -2929,8 +2932,9 @@ xref: Wikipedia:Organogenesis is_a: UBERON:0000105 ! life cycle stage relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0000068 ! embryo stage -relationship: preceded_by UBERON:0000110 ! neurula stage +relationship: preceded_by UBERON:0000110 {gci_relation="part_of", gci_filler="NCBITaxon:32523"} ! neurula stage relationship: simultaneous_with GO:0048513 ! animal organ development +property_value: seeAlso "https://github.com/obophenotype/developmental-stage-ontologies/issues/84" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/533" xsd:anyURI [Term] @@ -3913,7 +3917,7 @@ xref: CARO:0000081 is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0000463 ! organism substance intersection_of: part_of UBERON:0002193 ! hemolymphoid system -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa creation_date: 2009-04-08T04:38:19Z @@ -3989,7 +3993,7 @@ def: "A blood brain barrier that is composed of endothelial cells." [https://orc xref: NIF_Subcellular:nlx_subcell_100205 intersection_of: UBERON:0000120 ! blood brain barrier intersection_of: composed_primarily_of CL:0000115 ! endothelial cell -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall creation_date: 2009-04-10T08:15:44Z [Term] @@ -3998,7 +4002,7 @@ name: glial blood brain barrier def: "A blood brain barrier composed of glial cells." [https://orcid.org/0000-0002-6601-2165] intersection_of: UBERON:0000120 ! blood brain barrier intersection_of: composed_primarily_of CL:0000125 ! glial cell -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall creation_date: 2009-04-10T08:42:24Z [Term] @@ -4023,7 +4027,7 @@ xref: Wikipedia:Avian_pallium xref: Wikipedia:Pallium_(neuroanatomy) xref: ZFA:0000505 is_a: UBERON:0002616 ! regional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall relationship: part_of UBERON:0001893 ! telencephalon relationship: present_in_taxon NCBITaxon:7762 {source="PMID:8932866"} ! Myxinidae property_value: homology_notes "In the anatomy of animals, an avian pallium is the dorsal telencephalon of a bird's brain. Pallium of avian species tend to be relatively large, comprising ~75% of the telencephalic volume." xsd:string {source="Wikipedia:Avian_pallium", taxon="NCBITaxon:8782"} @@ -4047,7 +4051,7 @@ xref: EFO:0003522 xref: TAO:0000304 xref: ZFA:0000304 is_a: UBERON:0002616 ! regional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall relationship: dorsal_to UBERON:0000203 {notes="separated by cell-free region"} ! pallium relationship: part_of UBERON:0001893 ! telencephalon property_value: external_ontology_notes "BTO term refers specifically to the avian structure" xsd:string {external_ontology="BTO"} @@ -4061,7 +4065,7 @@ synonym: "papulae" EXACT PLURAL [ISBN:0030229073] synonym: "papulli" EXACT PLURAL [] xref: Wikipedia:Papula is_a: UBERON:0002535 ! gill -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall relationship: only_in_taxon NCBITaxon:7586 ! Echinodermata creation_date: 2009-04-18T01:13:57Z @@ -4073,7 +4077,7 @@ xref: ANISEED:1235300 xref: Wikipedia:Gill#Vertebrate_gills is_a: UBERON:0002535 ! gill relationship: adjacent_to UBERON:0001042 ! chordate pharynx -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall property_value: function_notes "Gills are made of filaments which help increase surface area for oxygen exchange" xsd:string property_value: taxon_notes "In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury" xsd:string creation_date: 2009-04-18T01:18:17Z @@ -4087,7 +4091,7 @@ xref: TADS:0000304 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0005389 ! transparent eye structure disjoint_from: UBERON:0000965 ! lens of camera-type eye -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall relationship: part_of UBERON:0000018 ! compound eye creation_date: 2009-04-18T01:35:32Z @@ -4204,7 +4208,7 @@ xref: Wikipedia:Toilet-claw is_a: UBERON:0001705 ! nail relationship: capable_of_part_of GO:0007625 ! grooming behavior relationship: capable_of_part_of NBO:0000451 {source="Wikipedia"} ! personal grooming -relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 +relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall creation_date: 2009-05-19T08:19:58Z [Term] @@ -24550,7 +24554,7 @@ xref: Wikipedia:Arcuate_arteries_of_the_kidney is_a: UBERON:0001637 ! artery relationship: branching_part_of UBERON:0009885 ! interlobar artery relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney -property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png" xsd:anyURI +property_value: depicted_by "https://upload.wikimedia.org/wikipedia/commons/8/87/2610_The_Kidney.jpg" xsd:anyURI [Term] id: UBERON:0001553 @@ -27926,6 +27930,7 @@ relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! faci relationship: overlaps UBERON:0001697 {source="ZFA-modified"} ! orbit of skull relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0011156 ! facial skeleton +relationship: part_of UBERON:7500102 ! preorbital bone region property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png" xsd:anyURI property_value: homology_notes "The infraorbital bone 1 of actinopterygians is homologous with the lacrimal bone (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001149", ontology="VHOG", source="ISBN:978-3899370805 Arratia G, Schultze HP, Wilson MVH, Mesozoic Fishes 4 - Homology and Phylogeny (2008) p.23-48", source="http://bgee.unil.ch/"} property_value: taxon_notes "In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species[ISBN 0-03-910284-X]" xsd:string @@ -28040,6 +28045,7 @@ relationship: overlaps UBERON:0001697 {source="ISBN:0073040584"} ! orbit of skul relationship: part_of UBERON:0001567 ! cheek relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0011156 ! facial skeleton +relationship: part_of UBERON:7500102 ! preorbital bone region property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png" xsd:anyURI property_value: external_definition "The jugal is a skull bone found in most reptiles, amphibians, and birds. In mammals, the jugal is often called the malar or Zygomatic. It is connected to the quadratojugal and maxilla, as well as other bones, which may vary by species. This bone is considered key in the determination of general traits of the skull, in the case of creatures, as with dinosaurs in paleontology, whose entire skull has not been found[Wikipedia:Jugal_bone]." xsd:string {source="Wikipedia:Jugal_bone"} property_value: external_definition "The zygomatic bone is a paired dermal bone which articulates with the maxilla. In humans it also articulates with the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders[WP,modified][Wikipedia:Zygomatic_bone]." xsd:string {source="Wikipedia:Zygomatic_bone"} @@ -36884,6 +36890,8 @@ intersection_of: UBERON:0007844 ! cartilage element intersection_of: part_of UBERON:0002185 ! bronchus relationship: composed_primarily_of UBERON:0001994 {source="MP"} ! hyaline cartilage tissue relationship: contributes_to_morphology_of UBERON:0002185 ! bronchus +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: has_part CL:0019002 ! tracheobronchial chondrocyte [Term] id: UBERON:0001957 @@ -36928,7 +36936,9 @@ xref: NCIT:C33755 xref: UMLS:C1179400 {source="ncithesaurus:Terminal_Bronchiole_Epithelium"} intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002187 ! terminal bronchiole +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: has_part CL:0000158 {source="FMA"} ! club cell +relationship: has_part CL:1000271 ! lung ciliated cell property_value: taxon_notes "A pseudostratified epithelium, containing basal cells, stem cells of the airway, submucosal glands and cartilage rings, is limited to the trachea and large lobar airways in the mouse (Morrisey and Hogan, 2010). This more complex epithelium extends to terminal bronchioles in the human[DOI:10.1242/dev.115469]" xsd:string [Term] @@ -38301,6 +38311,8 @@ xref: Wikipedia:Pulmonary_plexus intersection_of: UBERON:0001816 ! autonomic nerve plexus intersection_of: innervates UBERON:3010524 ! bronchial tube relationship: branching_part_of UBERON:0001759 ! vagus nerve +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: has_part CL:0011103 ! sympathetic neuron relationship: located_in UBERON:0003728 {source="FMA"} ! mediastinum [Term] @@ -39716,7 +39728,10 @@ is_a: UBERON:0004802 {source="BTO"} ! respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002186 ! bronchiole relationship: contributes_to_morphology_of UBERON:0002186 ! bronchiole +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: has_part CL:0000158 ! club cell relationship: has_part CL:0002145 {source="FMA"} ! ciliated columnar cell of tracheobronchial tree +relationship: has_part CL:1000271 ! lung ciliated cell relationship: part_of UBERON:0005039 ! mucosa of bronchiole [Term] @@ -43832,7 +43847,6 @@ xref: Wikipedia:Bronchiole is_a: UBERON:0000117 ! respiratory tube relationship: branching_part_of UBERON:0007196 {source="FMA"} ! tracheobronchial tree relationship: part_of UBERON:0002048 {source="MA"} ! lung -relationship: part_of UBERON:0010368 {source="ncit"} ! pulmonary lobule property_value: depicted_by "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: external_ontology_notes "In FMA2 and FMA3, lobular bronchiole is an exact synonym of bronchiole; however, there are two distinct terms for the corresponding epithelium." xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "bronchiolar" xsd:string @@ -43841,7 +43855,7 @@ property_value: structure_notes "lacks submucosa and cartilage plates; they have [Term] id: UBERON:0002187 name: terminal bronchiole -def: "The last conducting structure of non-respiratory bronchioles; after this point, the airways have alveoli in their walls." [ISBN:0-397-51047-0, MGI:cwg, MP:0002268] +def: "A bronchiole that is part of a secondary pulmonary lobule and the last conducting structure of a non-respiratory bronchiole; after this point, the airways have alveoli in their walls." [ISBN:0-397-51047-0, MGI:cwg, MP:0002268, PMID:16543587] subset: pheno_slim subset: uberon_slim synonym: "bronchioli terminalis" RELATED LATIN [Wikipedia:Terminal_bronchiole] @@ -43856,6 +43870,9 @@ xref: SCTID:278981008 xref: UMLS:C0225666 {source="ncithesaurus:Terminal_Bronchiole"} xref: Wikipedia:Terminal_bronchiole is_a: UBERON:0002186 ! bronchiole +relationship: distally_connected_to UBERON:0002188 ! respiratory bronchiole +relationship: distally_connected_to UBERON:0008874 ! pulmonary acinus +relationship: part_of UBERON:0010369 ! secondary pulmonary lobule property_value: depicted_by "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI [Term] @@ -47955,6 +47972,10 @@ xref: FMA:86624 xref: MA:0001842 intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002183 ! lobar bronchus +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: has_part CL:0002329 ! basal epithelial cell of tracheobronchial tree +relationship: has_part CL:0002332 ! ciliated cell of the bronchus +relationship: has_part CL:0017000 ! pulmonary ionocyte [Term] id: UBERON:0002340 @@ -48006,6 +48027,14 @@ xref: MA:0001850 is_a: UBERON:0002031 ! epithelium of bronchus intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002184 ! segmental bronchus +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: has_part CL:0000158 ! club cell +relationship: has_part CL:0002208 ! brush cell of bronchus +relationship: has_part CL:0002329 ! basal epithelial cell of tracheobronchial tree +relationship: has_part CL:0002332 ! ciliated cell of the bronchus +relationship: has_part CL:0017000 ! pulmonary ionocyte +relationship: has_part CL:1000143 ! lung goblet cell +relationship: has_part CL:1000223 ! lung neuroendocrine cell relationship: part_of UBERON:0002184 ! segmental bronchus [Term] @@ -49866,6 +49895,7 @@ relationship: adjacent_to UBERON:0002244 ! premaxilla relationship: contributes_to_morphology_of UBERON:0001708 ! jaw skeleton relationship: develops_from UBERON:0010334 {source="EHDAA2"} ! maxillary process mesenchyme from neural crest relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton +relationship: overlaps UBERON:7500102 ! preorbital bone region relationship: part_of UBERON:0003113 {notes="facial series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0003277 {source="VHOG"} ! skeleton of upper jaw property_value: axiom_lost_from_external_ontology "relationship loss: overlaps autopalatine-maxillary joint (TAO:0001942)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000270", ontology="TAO"} @@ -78319,8 +78349,8 @@ synonym: "field CA1 of hippocampus" RELATED [NeuroNames:183] synonym: "field CA1, Ammon's horn (Lorente de Ns)" RELATED [NeuroNames:183] synonym: "hippocampus CA1" EXACT [] synonym: "prosubiculum = distal ca1" EXACT [BIRNLEX:1197] -synonym: "regio i cornus ammonis" EXACT LATIN [FMA:74042, FMA:TA] -synonym: "regio i hippocampi proprii" EXACT LATIN [FMA:74042, FMA:TA] +synonym: "regio I cornus ammonis" EXACT LATIN [FMA:74042, FMA:TA] +synonym: "regio I hippocampi proprii" EXACT LATIN [FMA:74042, FMA:TA] synonym: "regio superior" EXACT [BIRNLEX:1197] synonym: "regio superior of the hippocampus" EXACT [FMA:74042] synonym: "region 1 of Ammon's horn" EXACT [] @@ -84169,6 +84199,8 @@ xref: NCIT:C49213 xref: UMLS:C1707055 {source="ncithesaurus:Bronchus_Smooth_Muscle_Tissue"} intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002185 ! bronchus +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: has_part CL:0002598 ! bronchial smooth muscle cell [Term] id: UBERON:0004243 @@ -88075,6 +88107,8 @@ def: "A portion of smooth muscle tissue that is part of a terminal bronchiole [A xref: FMA:261051 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002187 ! terminal bronchiole +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: has_part CL:4033017 ! bronchiolar smooth muscle cell [Term] id: UBERON:0004517 @@ -88083,6 +88117,8 @@ def: "A portion of smooth muscle tissue that is part of a respiratory bronchiole xref: FMA:261055 intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002188 ! respiratory bronchiole +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: has_part CL:4033017 ! bronchiolar smooth muscle cell [Term] id: UBERON:0004518 @@ -93712,6 +93748,8 @@ synonym: "mesenchyme of lobar bronchus" EXACT [OBOL:automatic] xref: EMAPA:32698 intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002183 ! lobar bronchus +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: has_part CL:0019019 ! tracheobronchial smooth muscle cell [Term] id: UBERON:0004885 @@ -100431,7 +100469,7 @@ xref: MBA:632 xref: neuronames:2122 intersection_of: UBERON:0002304 ! layer of dentate gyrus intersection_of: immediately_deep_to UBERON:0004679 ! dentate gyrus molecular layer -relationship: composed_primarily_of CL:0000120 ! granule cell +relationship: composed_primarily_of CL:2000089 ! dentate gyrus of hippocampal formation granule cell relationship: overlaps CL:0000118 ! basket cell [Term] @@ -112682,7 +112720,7 @@ relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006481 name: Brodmann (1909) area 44 -def: "Brodmann area 44, or BA44, is part of the frontal cortex in the human brain. Situated just anterior to premotor cortex and on the lateral surface, inferior to BA9. This area is also known as pars opercularis (of the inferior frontal gyrus), and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. In the human it corresponds approximately to the opercular part of inferior frontal gyrus (H). Thus, it is bounded caudally by the inferior precentral sulcus (H) and rostrally by the anterior ascending limb of lateral sulcus (H). It surrounds the diagonal sulcus (H). In the depth of the lateral sulcus it borders on the insula. Cytoarchitectonically it is bounded caudally and dorsally by the agranular frontal area 6, dorsally by the granular frontal area 9 and rostrally by the triangular area 45 (Brodmann-1909)." [Wikipedia:Brodmann_area_44] +def: "Broca's area is a region of the inferior frontal gyrus (in the dominant cerebral hemisphere, usually on the left side) that is composed of parts of Brodmanns' areas 44 and 45." [https://orcid.org/0000-0002-1572-1316] synonym: "area 44 of Brodmann" EXACT [FMA:68641] synonym: "area 44 of Brodmann-1909" EXACT [BIRNLEX:1776] synonym: "area opercularis" EXACT [BIRNLEX:1776] @@ -112701,6 +112739,7 @@ xref: UMLS:C1272509 {source="BIRNLEX:1776"} xref: Wikipedia:Brodmann_area_44 is_a: UBERON:0013529 ! Brodmann area relationship: part_of UBERON:0000956 ! cerebral cortex +property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2917" xsd:anyURI [Term] id: UBERON:0006482 @@ -128192,6 +128231,10 @@ xref: EMAPA:37942 {source="MA:th"} intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002299 ! alveolus of lung relationship: contributes_to_morphology_of UBERON:0006524 ! alveolar system +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: has_part CL:0002062 ! type I pneumocyte +relationship: has_part CL:0002063 ! type II pneumocyte +relationship: has_part CL:0009089 ! lung pericyte [Term] id: UBERON:0008873 @@ -128218,7 +128261,8 @@ xref: NCIT:C33426 xref: SCTID:361365004 xref: UMLS:C0225696 {source="ncithesaurus:Pulmonary_Acinus"} xref: Wikipedia:Acinus#The_Lungs -is_a: UBERON:0010368 {source="FMA"} ! pulmonary lobule +relationship: connected_to UBERON:0002187 ! terminal bronchiole +relationship: part_of UBERON:0010369 ! secondary pulmonary lobule [Term] id: UBERON:0008876 @@ -138688,7 +138732,6 @@ xref: FMA:75739 xref: NCIT:C33428 intersection_of: UBERON:0009911 ! lobule intersection_of: part_of UBERON:0002048 ! lung -relationship: has_part UBERON:0002187 ! terminal bronchiole [Term] id: UBERON:0010369 @@ -190013,6 +190056,8 @@ synonym: "anterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA synonym: "anterior segmental artery of left lung" EXACT [FMA:13279] synonym: "anterior segmental artery of left upper lobe" EXACT [FMA:13279] xref: FMA:13279 +is_a: UBERON:0001637 ! artery +relationship: part_of UBERON:0001652 ! left pulmonary artery [Term] id: UBERON:0039851 @@ -190042,6 +190087,25 @@ is_a: UBERON:0001145 {source="FMA"} ! ovarian vein intersection_of: UBERON:0001145 ! ovarian vein intersection_of: drains UBERON:0002119 ! left ovary +[Term] +id: UBERON:0700019 +name: parallel fiber +def: "A parallel fiber results from the axon of a cerebellar granule cell ascending through the molecular layer where it synapses on the dendritic branches of Purkinje cells and stellate cells." [doi:10.1007/978-94-007-1333-8_63, GO:1990032] +comment: This a grouping class for parallel fibers in any species. If annotating a parallel fiber in any species other than teleost fish, consider using 'parallel fiber, bifurcated'. +is_a: UBERON:0006134 ! nerve fiber +relationship: overlaps CL:0001031 ! cerebellar granule cell +relationship: part_of UBERON:0002037 ! cerebellum +property_value: dcterms-date "2023-07-10T11:45:59Z" xsd:dateTime + +[Term] +id: UBERON:0700020 +name: parallel fiber, bifurcated +def: "A parallel fiber that results from the bifurcation of a cerebellar granule cell axon in the molecular layer into two diametrically opposed branches, that are oriented parallel to the long axis of the folium." [GO:1990032] +is_a: UBERON:0700019 ! parallel fiber +disjoint_from: UBERON:2002218 ! parallel fiber, teleost +relationship: never_in_taxon NCBITaxon:70862 +property_value: dcterms-date "2023-07-10T11:53:19Z" xsd:dateTime + [Term] id: UBERON:1000000 name: chin ventral margin @@ -190316,7 +190380,7 @@ name: digestive tract junction def: "An anatomical junction between two parts of the digestive tract." [https://orcid.org/0000-0002-7073-9172] intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0004921 ! subdivision of digestive tract -relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 +relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 ! David Osumi-Sutherland creation_date: 2021-02-05T11:19:31Z [Term] @@ -203396,10 +203460,13 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002218 -name: parallel fiber +name: parallel fiber, teleost +def: "A parallel fiber results from the axon of a cerebellar granule cell ascending through the molecular layer where it does not bifurcate and synapses on the dendritic branches of Purkinje cells and stellate cells. The parallel fibers in teleost fish do not bifurcate in contrast to other vertebrates." [doi:10.1007/978-94-007-1333-8_63] synonym: "parallel fibers" EXACT PLURAL [TAO:0002218] xref: ZFA:0001713 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0700019 ! parallel fiber +relationship: only_in_taxon NCBITaxon:70862 relationship: part_of UBERON:2000394 ! molecular layer corpus cerebelli relationship: part_of UBERON:2000913 ! molecular layer valvula cerebelli property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -221176,6 +221243,7 @@ relationship: present_in_taxon NCBITaxon:9788 ! Equidae id: UBERON:7500102 name: preorbital bone region def: "Part of the orbital plate formed by the jugal (part of the zygomatic), lacrimal (which is sometimes fused), sometimes nasal (typically in species with elongated rostra), and maxilla bones anterior to the orbit." [https://doi.org/10.1111/let.12011] +is_a: UBERON:0001062 ! anatomical entity relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:0001697 ! orbit of skull @@ -221489,7 +221557,7 @@ id: UBERON:8200002 name: copepodite stage 1 def: "A development stage of copepods which immediately follows the nauplius stage. It is characterized by the presence of 2 swimming legs." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage -relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 +relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0014860 ! copepodite stage relationship: part_of UBERON:0018378 ! crustacean larval stage @@ -221501,7 +221569,7 @@ id: UBERON:8200003 name: copepodite stage 2 def: "A development stage of copepods which immediately follows copepodite stage 1. It is characterized by the presence of 3 swimming legs." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage -relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 +relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0014860 ! copepodite stage relationship: part_of UBERON:0018378 ! crustacean larval stage @@ -221513,7 +221581,7 @@ id: UBERON:8200004 name: copepodite stage 3 def: "A development stage of copepods which immediately follows copepodite stage 2. It is characterized by the presence of 4 swimming legs." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage -relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 +relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0014860 ! copepodite stage relationship: part_of UBERON:0018378 ! crustacean larval stage @@ -221525,7 +221593,7 @@ id: UBERON:8200005 name: copepodite stage 4 def: "A development stage of copepods which immediately follows copepodite stage 3. It is characterized by the presence of 5 swimming legs." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage -relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 +relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0014860 ! copepodite stage relationship: part_of UBERON:0018378 ! crustacean larval stage @@ -221537,7 +221605,7 @@ id: UBERON:8200006 name: copepodite stage 5 def: "A pre-adult stage of copepods which immediately follows copepodite stage 4. It is characterized by enlargement of the urosome and development of sexual organs." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage -relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 +relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0000113 ! post-juvenile adult stage relationship: preceded_by UBERON:8200005 ! copepodite stage 4 @@ -221548,7 +221616,7 @@ id: UBERON:8200007 name: copepodite stage 6 def: "A fully formed stage of copepods which immediately follows copepodite stage 5. It is characterized by the complete development of the fifth swimming leg." [http://orcid.org/0000-0002-2908-3327] is_a: UBERON:0000105 ! life cycle stage -relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 +relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 ! Anne Thessen relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0000066 ! fully formed stage relationship: preceded_by UBERON:8200006 ! copepodite stage 5 @@ -222740,7 +222808,7 @@ is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain relationship: capable_of_part_of GO:0007601 ! visual perception relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex relationship: contributes_to_morphology_of UBERON:0002021 ! occipital lobe -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan relationship: in_taxon NCBITaxon:9443 ! Primates relationship: part_of UBERON:0000411 {source="WP"} ! visual cortex property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png" xsd:anyURI @@ -222752,7 +222820,7 @@ def: "The part of the cortex that is responsible for processing visual informati intersection_of: UBERON:0035014 ! functional part of brain intersection_of: capable_of_part_of GO:0007601 ! visual perception intersection_of: part_of UBERON:0000956 ! cerebral cortex -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan [Term] id: UBERON:8440012 @@ -223034,7 +223102,7 @@ synonym: "lateral tuberal nucleus (sensu Rodentia)" EXACT [PMID:29976812] xref: DMBA:16271 xref: MBA:614 is_a: UBERON:0002308 ! nucleus of brain -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan relationship: in_taxon NCBITaxon:9989 ! Rodentia relationship: part_of UBERON:0001898 ! hypothalamus property_value: curator_notes "Lateral tuberal nucleus is listed as both an exact synonym and related synonym as the term has been used in both ways. See https://github.com/obophenotype/uberon/issues/2439 for more details. No homology links has been made as this is unclear from the literature." xsd:string @@ -223046,7 +223114,7 @@ def: "A prominent nucleus located in the ventral tuberal area of Teleostei that comment: This term is used specifically for fish (or Teleostei in general) as lateral tuberal nucleus (UBERON:0000435) refers to a structure that is specific to humans and higher primates. See https://github.com/obophenotype/uberon/issues/2439 for more details. {xref="PMID:1362279"} synonym: "NLT system (sensu Teleostei)" EXACT [DOI:10.1016/0016-6480(71)90165-1] is_a: UBERON:0001937 ! lateral hypothalamic nucleus -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan relationship: in_taxon NCBITaxon:32443 ! Teleostei [Term] @@ -223055,14 +223123,14 @@ name: superior paraolivary nucleus def: "A structure embedded in the superior olivary complex that is driven by input pathways from the octopus cells in the cochlear nucleus and the neurons of the medial nucleus of the trapezoid body." [DOI:10.1093/oxfordhb/9780190849061.013.11] synonym: "SPON" EXACT [DOI:10.1093/oxfordhb/9780190849061.013.11] is_a: UBERON:0007247 ! nucleus of superior olivary complex -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan [Term] id: UBERON:8440044 name: upper layers of the cortex def: "A laminar subdivision of the neocortex that is comprised of the more surface layers, commonly layers two through four." [DOI:10.1101/2022.10.12.511898] is_a: UBERON:8440004 ! laminar subdivision of the cortex -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan [Term] id: UBERON:8440045 @@ -223143,7 +223211,7 @@ id: UBERON:8440051 name: lower layers of the cortex def: "A laminar subdivision of the neocortex that is comprised of the deeper layers, commonly layers five and six, however, could also consist part of layer four." [DOI:10.1101/2022.10.12.511898] is_a: UBERON:8440004 ! laminar subdivision of the cortex -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan [Term] id: UBERON:8440052 @@ -223336,7 +223404,7 @@ synonym: "LTN" EXACT ABBREVIATION [MBA:283] xref: MBA:283 xref: neuronames:1957 is_a: UBERON:0002308 ! nucleus of brain -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan relationship: dorsal_to UBERON:0007632 ! Barrington's nucleus relationship: part_of UBERON:0003023 ! pontine tegmentum relationship: ventral_to UBERON:0002148 ! locus ceruleus @@ -223348,7 +223416,7 @@ def: "A nucleus of the brain that is the most ventral portion of the gigantocell synonym: "MARN" EXACT ABBREVIATION [MBA:307] xref: MBA:307 is_a: UBERON:0002308 ! nucleus of brain -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan relationship: part_of UBERON:0002155 ! gigantocellular nucleus relationship: part_of UBERON:0025525 ! motor system @@ -223362,7 +223430,7 @@ synonym: "ISVe" EXACT ABBREVIATION [NeuroNames:719] xref: MBA:76 xref: NeuroNames:719 is_a: UBERON:0000125 ! neural nucleus -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan relationship: part_of UBERON:0002731 ! vestibulocochlear nerve root [Term] @@ -223372,7 +223440,7 @@ def: "The part of the cerebral cortex that is responsible for the perception of synonym: "gustatory area" EXACT [MBA:1057] xref: MBA:1057 is_a: UBERON:0002616 ! regional part of brain -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001033 ! gustatory system @@ -223382,7 +223450,7 @@ name: somatomotor area def: "A part of the cerebral cortex that comprises of the primary motor cortex and the premotor cortex." [MBA:500] xref: MBA:500 is_a: UBERON:0002616 ! regional part of brain -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan relationship: has_part UBERON:0001384 ! primary motor cortex relationship: has_part UBERON:0016634 ! premotor cortex @@ -223395,7 +223463,7 @@ is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0007193 ! orbital gyrus relationship: adjacent_to UBERON:0015800 ! taenia tectum of brain relationship: adjacent_to UBERON:8440033 ! infralimbic area -relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 +relationship: dc-contributor https://orcid.org/0000-0001-7258-9596 ! Shawn Zheng Kai Tan relationship: present_in_taxon NCBITaxon:10090 {xref="MBA:1078"} ! Mus musculus relationship: present_in_taxon NCBITaxon:10114 {xref="NeuroNames:1975"} ! Rattus @@ -224054,6 +224122,38 @@ relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: part_of UBERON:0006767 ! head of femur property_value: dcterms-date "2023-05-30T06:34:18Z" xsd:dateTime +[Term] +id: UBERON:8480063 +name: dorsal iris +def: "The dorsal part of the iris. In urodeles (newts and salamanders) the dorsal iris is involved in lens regeneration in a process named Wolffian lens regeneration." [PMID:17030116, PMID:29579253] +synonym: "dorsal rim of the iris" EXACT [PMID:29579253] +is_a: UBERON:0000064 ! organ part +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: overlaps UBERON:0002506 ! iris epithelium +relationship: part_of UBERON:0001769 ! iris +property_value: curator_notes "In urodeles, lens regeneration proceeds through two steps. The first step involves the entire circumference of the iris pigmented epithelium. The second step is confined to the pigmented epithelial cells located along the dorsal rim of the iris and involves dorsal-specific activation of the Wnt signaling pathway." xsd:string +property_value: dcterms-date "2023-06-06T08:06:04Z" xsd:dateTime + +[Term] +id: UBERON:8480065 +name: labial gland +def: "The labial gland is one of the minor salivary glands, located mainly under the mucosal epithelium of the upper and lower lip and within the orbicularis oris muscle fibers. The labial gland secrete mucous and serous substances to maintain oral health. In particular, the inferior labial gland not only promotes moisturization in the oral cavity but also secretes substances with antibacterial effects." [PMID:34422599] +synonym: "labial minor salivary gland" EXACT [PMID:34274288] +synonym: "labial salivary gland" EXACT [FMA:59792, NCIT:C32904] +xref: BTO:0001548 +is_a: UBERON:0001830 ! minor salivary gland +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +property_value: dcterms-date "2023-06-19T12:41:05Z" xsd:dateTime + +[Term] +id: UBERON:8480066 +name: interscapular region +def: "The region in the upper part of the back between the shoulder blades." [https://orcid.org/0000-0002-0819-0473] +is_a: UBERON:0000475 ! organism subdivision +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: part_of UBERON:0001137 ! dorsum +property_value: dcterms-date "2023-06-23T09:06:25Z" xsd:dateTime + [Term] id: UBERON:8500000 name: cranial temporal line diff --git a/src/ontology/uberon-odk.yaml b/src/ontology/uberon-odk.yaml index 823459f78b..3e399e3adb 100644 --- a/src/ontology/uberon-odk.yaml +++ b/src/ontology/uberon-odk.yaml @@ -26,6 +26,7 @@ release_artefacts: - custom-composite-metazoan-basic - custom-composite-vertebrate - custom-composite-vertebrate-basic + - custom-common-anatomy edit_format: obo import_group: use_base_merging: TRUE diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile index b6dba9ac58..8405e0dd0d 100644 --- a/src/ontology/uberon.Makefile +++ b/src/ontology/uberon.Makefile @@ -85,41 +85,23 @@ checks: $(REPORTDIR)/uberon-edit-xp-check $(REPORTDIR)/uberon-edit-obscheck.txt test: $(REPORTDIR)/uberon-edit-xp-check reports/bfo-check.txt # ---------------------------------------- -# STEP 1: pre-processing and quick validation +# STEP 1: pre-processing # ---------------------------------------- -# make edit owl file from previous step, merge in contributors (derived from github API) and expand macros - -# TODO issues/contributor.owl not being updated atm. -# TODO: for the seeds to be correctly imported, we probably need to merge phenoscape in here -# TODO: Huge number of printouts that pollute the general logs -tmp/uberon-merged.owl: $(SRC) - $(ROBOT) merge -i $< -o $@ - $(TMPDIR)/taxslim-disjoint-over-in-taxon.owl: wget http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl -O $@ -# TODO This goal needs to be revised carefully. remove_axioms removes RO labels to avoid duplicates -# merge -i ro_import then adds them back to ensure they are canonical. -# Cannot add $(IMPORTDIR)/ro_import.owl as dependency because it cause to be circular with tmp/seed.txt -# **Hacking_Feb_2022** Notes start here. -# Issue: Dependency for QC. -# OWL files to add to imports on -editor file. $(COMPONENTSDIR)/disjoint_union_over.ofn - this needs to be made a proper component -# issues/contributor.owl # Generated by https://github.dev/obophenotype/uberon/tree/uberon.make_hacking_notes - uses github API to link terms to contributor github IDs -## Decision - fold this in for now (requires updates to property and mapping to orcid) - Longer term revisit script for ODK -# Create taxon constraing component to factor out OWLTOOLS -## Refactor expansion of taxon constraints by ROBOT to separate goal. Axioms created go into separate component file which is rebuilt by the new goal. -# $(SCRIPTSDIR)/expand-dbxref-literals.pl -## Turns some CURIES into expanded URI syntax -## TODO: Leave for now but make a ticket for replacment (maybe with SPARQL?) -$(OWLSRC): tmp/uberon-merged.owl $(COMPONENTSDIR)/disjoint_union_over.ofn $(TMPDIR)/taxslim-disjoint-over-in-taxon.owl $(REPORTDIR)/$(SRC)-gocheck $(REPORTDIR)/$(SRC)-iconv $(SCRIPTSDIR)/expand-dbxref-literals.pl - echo "STRONG WARNING: issues/contributor.owl needs to be manually updated." - $(OWLTOOLS) --no-logging $< $(COMPONENTSDIR)/disjoint_union_over.ofn $(TMPDIR)/taxslim-disjoint-over-in-taxon.owl issues/contributor.owl --merge-support-ontologies -o $@ && $(SCRIPTSDIR)/expand-dbxref-literals.pl $@ > $@.tmp - # The previous step seems to be necessary because somehow the expand-dbxref-literals script expects the owtools output.. No idea why - $(ROBOT) expand -i $@.tmp --no-expand-term http://purl.obolibrary.org/obo/RO_0002175 \ - query \ - --update $(SPARQLDIR)/remove_axioms.ru \ - --update $(SPARQLDIR)/delete-definition-dot.ru \ - merge -i $(IMPORTDIR)/ro_import.owl -o $@ + +# Merge the edit file file with imports, component of disjointness axioms, +# and list of contributors, then expand macros. +# FIXME: Need explanation for not expanding RO:0002175 specifically. +$(OWLSRC): $(SRC) $(COMPONENTSDIR)/disjoint_union_over.ofn $(REPORTDIR)/$(SRC)-gocheck $(REPORTDIR)/$(SRC)-iconv $(TMPDIR)/taxslim-disjoint-over-in-taxon.owl + @echo "STRONG WARNING: issues/contributor.owl needs to be manually updated." + $(ROBOT) merge -i $< \ + -i $(COMPONENTSDIR)/disjoint_union_over.ofn \ + -i issues/contributor.owl \ + -i $(TMPDIR)/taxslim-disjoint-over-in-taxon.owl \ + expand --no-expand-term http://purl.obolibrary.org/obo/RO_0002175 \ + -o $@ $(TMPDIR)/NORMALIZE.obo: $(SRC) $(ROBOT) convert -i $< -o $@.tmp.obo && mv $@.tmp.obo $@ @@ -257,6 +239,16 @@ subsets/cumbo.obo: subsets/cumbo.owl #supercheck.owl: $(TMPDIR)/unreasoned.owl # owltools $(UCAT) $< $(COMPONENTSDIR)/phenoscape-ext.owl --merge-support-ontologies --expand-macros --assert-inferred-subclass-axioms --useIsInferred -o -f functional $@ +# ---------------------------------------- +# STEP 6: Create common anatomy subset +# ---------------------------------------- + +common-anatomy.owl: $(ONT).owl + $(OWLTOOLS) $< --extract-ontology-subset --fill-gaps --subset common_anatomy -o $@.tmp.owl && mv $@.tmp.owl $@ &&\ + $(ROBOT) annotate --input $@ --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) -o $@.tmp.owl && mv $@.tmp.owl $@ +.PRECIOUS: common-anatomy.owl + + # ---------------------------------------- # IMPORTS @@ -1726,15 +1718,15 @@ ALLENS = dmba hba dhba pba mba allen_all: $(patsubst %,$(TMPDIR)/allen-%.obo,$(ALLENS)) $(TMPDIR)/allen-dmba.json: | $(TMPDIR) - wget http://api.brain-map.org/api/v2/structure_graph_download/17.json -O $@ + wget https://api.brain-map.org/api/v2/structure_graph_download/17.json -O $@ $(TMPDIR)/allen-hba.json: | $(TMPDIR) - wget http://api.brain-map.org/api/v2/structure_graph_download/10.json -O $@ + wget https://api.brain-map.org/api/v2/structure_graph_download/10.json -O $@ $(TMPDIR)/allen-dhba.json: | $(TMPDIR) - wget http://api.brain-map.org/api/v2/structure_graph_download/16.json -O $@ + wget https://api.brain-map.org/api/v2/structure_graph_download/16.json -O $@ $(TMPDIR)/allen-pba.json: | $(TMPDIR) - wget http://api.brain-map.org/api/v2/structure_graph_download/8.json -O $@ + wget https://api.brain-map.org/api/v2/structure_graph_download/8.json -O $@ $(TMPDIR)/allen-mba.json: | $(TMPDIR) - wget http://api.brain-map.org/api/v2/structure_graph_download/1.json -O $@ + wget https://api.brain-map.org/api/v2/structure_graph_download/1.json -O $@ $(TMPDIR)/allen-%.obo: $(TMPDIR)/allen-%.json $(SCRIPTSDIR)/allen-json2obo.pl $(SCRIPTSDIR)/allen-json2obo.pl $< > $@ diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index f07c684de9..50df4a6a41 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-05-23") + +Annotation(owl:versionInfo "2023-07-07") Declaration(Class()) Declaration(Class()) diff --git a/subsets/life-stages-composite.obo b/subsets/life-stages-composite.obo index 6581158781..fba0fd259f 100755 --- a/subsets/life-stages-composite.obo +++ b/subsets/life-stages-composite.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: uberon/releases/2023-05-23/subsets/life-stages-composite.owl +data-version: uberon/releases/2023-06-27/subsets/life-stages-composite.owl subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -40,6 +40,7 @@ subsetdef: frequent_anatomy_items "" subsetdef: frequent_anatomy_items "Frequently Used Anatomy slim" subsetdef: FT_new "" subsetdef: functional_classification "functional_classification" +subsetdef: general_cell_types_upper_slim "" subsetdef: goantislim_grouping "" subsetdef: gocheck_do_not_annotate "" subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" @@ -47,7 +48,6 @@ subsetdef: gocheck_do_not_manually_annotate "" subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" subsetdef: goslim_agr "" subsetdef: goslim_aspergillus "" -subsetdef: goslim_aspergillus "Aspergillus GO slim" subsetdef: goslim_candida "" subsetdef: goslim_candida "Candida GO slim" subsetdef: goslim_ChEMBL "" @@ -62,7 +62,6 @@ subsetdef: goslim_metagenomics "" subsetdef: goslim_mouse "" subsetdef: goslim_pir "" subsetdef: goslim_plant "" -subsetdef: goslim_plant "Plant GO slim" subsetdef: goslim_pombe "" subsetdef: goslim_pombe "Fission yeast GO slim" subsetdef: goslim_synapse "" @@ -104,7 +103,6 @@ subsetdef: ro-eco "" subsetdef: RO:0002259 "" subsetdef: scalar_slim "" subsetdef: sectional_anatomy_items "" -subsetdef: term_scheduled_for_obsoletion "" subsetdef: termgenie_unvetted "" subsetdef: TL_lineage_clone "" subsetdef: uberon_slim "Uberon slim - subset that excludes obscure terms and deep compositional terms" @@ -171,7 +169,7 @@ synonymtypedef: TRAIT "" synonymtypedef: vertebrate "synonym typically used in the context of vertebrate anatomy" synonymtypedef: VFB_SYMBOL "" ontology: uberon/subsets/life-stages-composite -property_value: owl:versionInfo "2023-05-23" xsd:string +property_value: owl:versionInfo "2023-06-27" xsd:string [Term] id: AcarDv:0000000 @@ -4362,6 +4360,7 @@ name: stem cell def: "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:D013234] def: "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:A.11.872] comment: This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’. +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "animal stem cell" EXACT [] xref: CALOHA:TS-2086 @@ -4440,10 +4439,12 @@ name: fibroblast def: "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped." [http://63.198.234.228/OpenFMA/Fibroblast.html, ISBN:0517223651, MESH:A.11.329.228] def: "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped." [http://en.wikipedia.org/wiki/Fibroblast, ISBN:0517223651, MESH:D005347] comment: These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative. +subset: general_cell_types_upper_slim subset: human_reference_atlas xref: BTO:0000452 xref: CALOHA:TS-0362 xref: FMA:63877 +xref: NCIT:C12482 xref: VHOG:0001482 is_a: CL:0002320 ! connective tissue cell relationship: develops_from CL:0000134 ! mesenchymal cell @@ -4491,6 +4492,7 @@ is_a: CL:0000012 ! cell by class id: CL:0000066 name: epithelial cell def: "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:D004847] +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "epitheliocyte" EXACT [] xref: BTO:0000414 @@ -4561,6 +4563,7 @@ id: CL:0000136 name: fat cell def: "A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides." [MESH:A.11.329.114] def: "A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides." [MESH:D017667] +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "adipocyte" EXACT [] synonym: "adipocyte" RELATED [] @@ -4762,6 +4765,7 @@ id: CL:0000499 name: stromal cell def: "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [GOC:tfm, MESH:D017154] def: "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [GOC:tfm, MESH:A.11.329.830] +subset: general_cell_types_upper_slim subset: human_reference_atlas xref: BTO:0002064 xref: FMA:83624 @@ -4789,6 +4793,7 @@ name: neuron def: "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [MESH:A.08.663, MESH:D009474] def: "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [http://en.wikipedia.org/wiki/Neuron, MESH:D009474] comment: These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "nerve cell" EXACT [] synonym: "nerve cell" RELATED [] @@ -4872,6 +4877,7 @@ alt_id: FMA:83808 def: "A myocyte located in the heart. The contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [GOC:tfm, ISBN:0323052908] def: "Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [GOC:mtg_cardiacconduct_nov11, GOC:tfm, ISBN:0323052908, PMID:22426062, PMID:4711263] comment: This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction. +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "cardiac muscle fiber" EXACT [GO:0048739] synonym: "cardiac myocyte" EXACT [] @@ -4902,6 +4908,7 @@ relationship: present_in_taxon NCBITaxon:9606 id: CL:0001035 name: bone cell def: "A connective tissue cell found in bone." [GO_REF:0000034, GOC:add] +subset: general_cell_types_upper_slim subset: human_reference_atlas is_a: CL:0000548 {is_inferred="true"} ! animal cell intersection_of: CL:0000548 ! animal cell @@ -8380,6 +8387,7 @@ namespace: biological_process def: "The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues." [GOC:cjm, GOC:dph, GOC:ems, GOC:pf, Wikipedia:Cell_migration] xref: Wikipedia:Cell_migration is_a: GO:0048870 ! cell motility +relationship: never_in_taxon NCBITaxon:4890 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24787" xsd:anyURI [Term] @@ -24834,10 +24842,13 @@ xref: HsapDv:0000012 xref: MmusDv:0000017 xref: XAO:1000006 is_a: UBERON:0000067 ! obsolete embryo stage part +relationship: dubious_for_taxon NCBITaxon:7955 relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: preceded_by UBERON:0000109 ! gastrula stage relationship: simultaneous_with GO:0001841 ! neural tube formation +property_value: seeAlso "https://github.com/obophenotype/developmental-stage-ontologies/issues/84" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/343" xsd:anyURI +property_value: taxon_notes "In zebrafish, the times of neurulation and segmentation overlap so extensively there is no distinct neurula period of development, such as occurs largely before segmentation in amphibian embryos." xsd:string [Term] id: UBERON:0000111 @@ -24858,6 +24869,7 @@ is_a: UBERON:0000067 ! obsolete embryo stage part relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: preceded_by UBERON:0000110 ! neurula stage relationship: simultaneous_with GO:0048513 ! animal organ development +property_value: seeAlso "https://github.com/obophenotype/developmental-stage-ontologies/issues/84" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/533" xsd:anyURI [Term] @@ -31473,6 +31485,17 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivit property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern" xsd:anyURI is_a: mereotopologically_related_to ! mereotopologically related to +[Typedef] +id: connecting_branch_of +def: "b connecting-branch-of s iff b is connected to s, and there exists some tree-like structure t such that the mereological sum of b plus s is either the same as t or a branching-part-of t." [] +xref: RO:0002252 +property_value: example_of_usage "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is connecting branch of S, and B1-1 as a connecting branch of B1." xsd:string +property_value: RO:0004036 BFO:0000050 +property_value: seeAlso https://github.com/obophenotype/uberon/issues/2212 +is_a: connected_to ! connected to +is_a: in_branching_relationship_with ! in branching relationship with +inverse_of: has_connecting_branch + [Typedef] id: connects name: connects @@ -32747,6 +32770,14 @@ is_a: has_component ! has component created_by: dos creation_date: 2017-05-24T09:49:21Z +[Typedef] +id: has_connecting_branch +def: "inverse of connecting branch of" [] +subset: RO:0002259 +xref: RO:0002253 +property_value: RO:0004036 BFO:0000051 +is_a: in_branching_relationship_with ! in branching relationship with + [Typedef] id: has_cross_section name: has cross section @@ -33714,6 +33745,7 @@ def: "X in left side of Y <=> if Y is subdivided into two left and right portion def: "X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion." [BSPO:PATO_mtg_2009] def: "X in_left_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the left portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000120 +xref: NCIT:C25229 property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI is_a: in_lateral_side_of ! in lateral side of disjoint_from: in_right_side_of ! in_right_side_of @@ -33761,6 +33793,7 @@ def: "X in right side of Y <=> if Y is subdivided into two left and right portio def: "X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion." [BSPO:PATO_mtg_2009] def: "X in_right_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the right portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000121 +xref: NCIT:C25228 property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI is_a: in_lateral_side_of ! in lateral side of @@ -33771,8 +33804,8 @@ name: in_superficial_part_of namespace: spatial namespace: uberon def: "X superficial part of Y <=> if Y is subdivided into two superficial and deep portions, X is part of the superficial portion." [BSPO:cjm] -def: "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion." [http://orcid.org/0000-0002-6601-2165] def: "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion." [BSPO:cjm] +def: "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion." [http://orcid.org/0000-0002-6601-2165] xref: BSPO:0001100 is_a: part_of ! part_of @@ -33903,7 +33936,7 @@ property_value: http://purl.org/spar/cito/citesAsAuthority "http://www.ncbi.nlm. property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172 domain: CARO:0000003 ! connected anatomical structure inverse_of: innervates ! innervates -transitive_over: branching_part_of ! branching part of +transitive_over: branching_part_of ! branching_part_of [Typedef] id: innervates @@ -34757,6 +34790,7 @@ namespace: uberon def: "x proximal to y iff x is closer to the point of attachment with the body than y." [BSPO:cjm] comment: The elbow is proximal to the hand, but distal to the shoulder. xref: BSPO:0000100 +xref: NCIT:C25236 property_value: seeAlso FBcv:0000047 property_value: seeAlso FBql:00005868 is_transitive: true diff --git a/uberon-base.owl b/uberon-base.owl index 02a7cfaf73..13a8daf08d 100755 --- a/uberon-base.owl +++ b/uberon-base.owl @@ -15,7 +15,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -178,7 +178,7 @@ ZFA part_of NCBITaxon:7954 ZFS part_of NCBITaxon:7954 Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found. - 2023-05-23 + 2023-06-27 http://uberon.org @@ -17011,6 +17011,8 @@ Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system. + + In zebrafish, the times of neurulation and segmentation overlap so extensively there is no distinct neurula period of development, such as occurs largely before segmentation in amphibian embryos. BILS:0000110 BilaDO:0000009 HsapDv:0000012 @@ -17019,6 +17021,7 @@ uberon UBERON:0000110 neurula stage + https://github.com/obophenotype/developmental-stage-ontologies/issues/84 https://github.com/obophenotype/uberon/issues/343 @@ -17040,12 +17043,6 @@ - - - - - - @@ -17070,6 +17067,7 @@ segmentation stage UBERON:0000111 organogenesis stage + https://github.com/obophenotype/developmental-stage-ontologies/issues/84 https://github.com/obophenotype/uberon/issues/533 @@ -17338,7 +17336,7 @@ - + @@ -17351,14 +17349,14 @@ lung saccule - + - + GO @@ -17459,7 +17457,7 @@ - + @@ -17487,7 +17485,7 @@ lung bud http://upload.wikimedia.org/wikipedia/commons/7/71/Gray948.png - + @@ -17500,7 +17498,7 @@ - + EHDAA2 @@ -17924,8 +17922,8 @@ - - + + @@ -17951,24 +17949,24 @@ neural nucleus - + - + - + CUMBO - + we limit this structure by definition to chordate and vertebrate nervous systems @@ -18086,7 +18084,7 @@ - + The group of motor neurons residing in the pons that innervate the muscles of facial expression. FMA has 3 subclasses - left, right and motor nucleus of facial nerve, but no defs. It's not clear how facial nucleus is distinct from facial motor nucleus. BAMS:7 @@ -18113,14 +18111,14 @@ facial nucleus - + - + definitional @@ -18877,7 +18875,7 @@ - + @@ -18916,14 +18914,14 @@ anal canal https://upload.wikimedia.org/wikipedia/commons/0/01/Gray1078.png - + - + Wikipathways:WP2062 @@ -19098,8 +19096,8 @@ - - + + @@ -19132,24 +19130,24 @@ UBERON:0000162 cloaca - + - + - + ZFA - + AAO @@ -19231,8 +19229,8 @@ - - + + @@ -19251,24 +19249,24 @@ embryonic cloaca - + - + - + EHDAA2 - + EHDAA2 @@ -19291,8 +19289,8 @@ - - + + @@ -19334,24 +19332,24 @@ primitive urogenital sinus http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png - + - + - + MP-def - + EHDAA2 @@ -19441,7 +19439,7 @@ - + @@ -19514,7 +19512,7 @@ https://github.com/obophenotype/uberon/issues/661 http://upload.wikimedia.org/wikipedia/commons/0/06/Mouth_illustration-Otis_Archives.jpg - + @@ -19527,7 +19525,7 @@ - + exceptions in some taxa @@ -19901,7 +19899,7 @@ - + @@ -19933,14 +19931,14 @@ pair of lungs - + - + FMA-abduced @@ -20312,15 +20310,15 @@ - + - - + + A fluid that is composed of blood plasma and erythrocytes. This class excludes blood analogues, such as the insect analog of blood. See UBERON:0000179 haemolymphatic fluid. @@ -20362,34 +20360,34 @@ blood - + - + - + - + CL:tm - + https://github.com/obophenotype/uberon/issues/1330 - + Bgee:AN @@ -20580,7 +20578,7 @@ - + The narrow part of the shaft of the radius just below the head. FMA:23479 SCTID:181942005 @@ -20592,14 +20590,14 @@ neck of radius - + - + FMA @@ -20913,7 +20911,7 @@ - + Ventral part (base region) of the telencephalon. BTO term refers specifically to the avian structure @@ -20933,14 +20931,14 @@ ventral part of telencephalon - + - + separated by cell-free region @@ -21114,7 +21112,7 @@ - + @@ -21149,7 +21147,7 @@ http://upload.wikimedia.org/wikipedia/commons/9/97/Gray136.png https://upload.wikimedia.org/wikipedia/commons/5/5b/Frontal_bone.png - + @@ -21162,7 +21160,7 @@ - + cjm @@ -21222,7 +21220,7 @@ - + @@ -21257,7 +21255,7 @@ tetrapod parietal bone http://upload.wikimedia.org/wikipedia/commons/2/21/Gray132.png - + @@ -21270,7 +21268,7 @@ - + PMID:11523816 @@ -21443,7 +21441,7 @@ - + A specialized claw or nail on the foot of certain primates, used for personal grooming. 2009-05-19T08:19:58Z @@ -21452,14 +21450,14 @@ UBERON:0000212 toilet claw - + - + Wikipedia @@ -21557,7 +21555,7 @@ - + The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoöccipital membrane; Anterior atlantoöccipital membrane; Lateral atlantoöccipital. FMA:24939 MESH:D001269 @@ -21578,14 +21576,14 @@ atlanto-occipital joint http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png - + - + FMA-abduced-lr @@ -21682,9 +21680,9 @@ - - - + + + A closed space between the embryo and the amnion which contains the amniotic fluid and is formed by the fusion of the parts of the anterior and posterior amniotic folds. The closed sac between the embryo and the amnion, containing the amniotic fluid. [Free_Online_Medical_Dictionary] BTO:0000025 @@ -21704,34 +21702,34 @@ amniotic cavity http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png - + - + - + - + EHDAA2 - + cjm - + cjm @@ -21776,8 +21774,8 @@ - - + + An adductor muscle that attaches to the hip and femur. In humans, it is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP, generalized]. Originates on the iliac portion of the ventral iliac rim and inserts on the lateral surface of the M. adductor magnus.[AAO] @@ -21798,11 +21796,11 @@ adductor longus http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + @@ -21815,14 +21813,14 @@ - + pubic body just below the pubic crest dbpedia - + linea aspera dbpedia @@ -21949,16 +21947,16 @@ - - + + - - + + The thin innermost layer of the extraembryonic membranes that contains the amniotic fluid; the membrane forms a closed sac in which the embryo and later, the fetus, is suspended and protected. A thin but tough extraembryonic membrane of reptiles, birds and mammals that lines the chorion and contains the fEtus and the amniotic fluid around it. [Biology_Online][VHOG] @@ -21986,44 +21984,44 @@ amnion http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png - + - + - + - + - + Hymans - + ISBN:0073040584 - + ISBN:0073040584-table5.4 - + ISBN:0073040584-table5.4 @@ -22291,8 +22289,8 @@ - - + + @@ -22312,24 +22310,24 @@ UBERON:0000312 inner cambium layer of periosteum - + - + - + FMA - + Wikipedia @@ -22634,7 +22632,7 @@ - + The space between the arachnoid and pia mater. BTO:0000230 EMAPA:32666 @@ -22658,14 +22656,14 @@ http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray769.png - + - + ISBN:0471888893 @@ -23125,7 +23123,7 @@ - + The branched tubular glands found in the mucosa of the fundus and body of the stomach which contain parietal cells that secrete hydrochloric acid and zymogenic cells that produce pepsin. BTO:0000503 EMAPA:27181 @@ -23136,7 +23134,7 @@ gastric gland - + @@ -23149,7 +23147,7 @@ - + ISBN:0073040584 @@ -24061,7 +24059,7 @@ - + The sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead. Sensory medial ramus of the trigeminal nerve.[AAO] @@ -24113,14 +24111,14 @@ Terminology notes. This nerve is known by a ridiculous number of names[http://palaeos.com/vertebrates/glossary/glossaryPo.html] ophthalmic nerve - + - + may be a distinct nerve in teleosts multiple @@ -24377,14 +24375,14 @@ - + - + A fibrous membrane, which, in the neck, represents the supraspinal ligaments of the upper vertebrae. @@ -24406,24 +24404,24 @@ UBERON:0000351 nuchal ligament - + - + - + BTO - + C7 in humans @@ -25339,9 +25337,9 @@ - - - + + + The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]. BTO:0001288 @@ -25357,15 +25355,15 @@ adductor brevis http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + - + @@ -25378,20 +25376,20 @@ - + dbpedia - + anterior surface of the inferior ramus and body of the pubis dbpedia - + the lesser trochanter and linea aspera of the femur dbpedia @@ -25414,7 +25412,7 @@ - + The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]. Thus, certain telencephalic characters - such as the presence of a pallium divided into lateral, dorsal, and medial formations and a subpallium divided into striatum and septum - appear to characterize all vertebrates. They are primitive characters and are homologous among all vertebrates.[well established][VHOG] The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2] @@ -25444,14 +25442,14 @@ corpus striatum http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray656.png - + - + MA @@ -25501,10 +25499,10 @@ - - - - + + + + An adductor muscle that attaches to the pelvic bone and the femur. In humans, the adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP,generalized]. Origin by two heads that are separated by a ventral tendon of the M. semitendinosus. One head originates from the ventral border of the pubic portion of the pelvic rim. The other head originates from the ischiatic border of the pelvic rim. The ventral head fuses with accessory head from the M. semitendinosus and inserts along the ventro-medial border of the femur. The dorsal belly merges with the ventral and accessory heads and inserts along the medial surface of the femur.[AAO] @@ -25524,19 +25522,19 @@ adductor magnus http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + - + - + @@ -25549,28 +25547,28 @@ - + posterior branch of obturator nerve and sciatic nerve dbpedia - + posterior branch of obturator nerve and sciatic nerve dbpedia - + tuberosity of the ischium dbpedia - + dbpedia @@ -25608,8 +25606,8 @@ - - + + @@ -25636,11 +25634,11 @@ syncytiotrophoblast http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png - + - + @@ -25653,13 +25651,13 @@ - + BTO - + EMAPA @@ -25707,8 +25705,8 @@ - - + + A muscle on the upper surface of the foot that helps extend digits 2 through 4. BTO:0001337 @@ -25725,25 +25723,25 @@ http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray441.png - + - + - + dorsal surface of calcaneus dbpedia - + proximal dorsal region of middle phalanges 2 3 and 4 dbpedia @@ -26021,7 +26019,7 @@ - + @@ -26074,14 +26072,14 @@ hindlimb stylopod http://upload.wikimedia.org/wikipedia/commons/4/4b/Gray1238.png - + - + MA @@ -26388,7 +26386,7 @@ - + @@ -26422,7 +26420,7 @@ tongue muscle http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray1019.png - + @@ -26435,7 +26433,7 @@ - + FEED:rd ISBN:1607950324 @@ -26693,14 +26691,14 @@ - + - + @@ -26734,24 +26732,24 @@ urinary bladder detrusor smooth muscle https://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg - + - + - + FMA - + posterior surface of the body of the pubis dbpedia @@ -26834,7 +26832,7 @@ - + Apocrine sweat glands are sweat glands composed of a coiled secretory portion located at the junction of the dermis and subcutaneous fat, from which a straight portion inserts and secretes into the infundibular portion of the hair follicle. The ducts of apocrine glands open into the canals of hair follicles. The stimulus for the secretion of apocrine sweat glands is adrenaline, which is a hormone carried in the blood[WP]. @@ -26855,7 +26853,7 @@ apocrine sweat gland https://github.com/obophenotype/uberon/issues/2111 - + @@ -26868,7 +26866,7 @@ - + FMA @@ -27138,7 +27136,7 @@ - + A part of the pharynx that consists of a flap of elastic cartilage tissue plus a mucous membrane covering, attached to the entrance of the larynx. The epiglottis is found at the root of the tongue and folds back over the entrance to the larynx during swallowing, preventing inhalation of food or drink[MP,modified]. epiglottal @@ -27158,14 +27156,14 @@ epiglottis http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray958.png - + - + EHDAA2 @@ -27382,10 +27380,10 @@ - - - - + + + + The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]. BTO:0001648 EMAPA:37648 @@ -27400,19 +27398,19 @@ longissimus muscle http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png - + - + - + - + @@ -27425,25 +27423,25 @@ - + BTO - + dbpedia - + dbpedia - + dbpedia @@ -27501,7 +27499,7 @@ - + The group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. distributed to the hair cells of the spiral organ. The cochlear fibers arise in bipolar cells in the spiral ganglion in the modiolus. in BTO this is part of the cochlear modiolus, but this leads to the CG being in both the nervous and skeletal systems BAMS:GcVIII @@ -27532,14 +27530,14 @@ cochlear ganglion http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray903.png - + - + cell bodies BTO-modified Wikipedia @@ -27619,7 +27617,7 @@ - + Any of the large papillae, which have multiple taste buds in the trough surrounding the papillae, located near the base and on the dorsal side of the tongue. Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongu[BTO:0001705, Wikipedia:Vallate_papilla]e UBERON:0002927 @@ -27645,14 +27643,14 @@ vallate papilla http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1015.png - + - + MP-abduced @@ -27981,7 +27979,7 @@ - + An epithelium that is part of a jejunum. BTO:0001743 @@ -27996,7 +27994,7 @@ jejunal epithelium - + @@ -28009,7 +28007,7 @@ - + FMA @@ -28154,7 +28152,7 @@ - + @@ -28205,14 +28203,14 @@ http://upload.wikimedia.org/wikipedia/commons/5/55/Layers_of_the_scalp_and_meninges.png https://upload.wikimedia.org/wikipedia/commons/e/eb/Double_cowlick.jpg - + - + BTO @@ -28253,7 +28251,7 @@ - + One of a a paired bundle of nerve fibers plus ganglia that run from the base of the skull to the coccyx. AAO:0010791 BAMS:S @@ -28273,14 +28271,14 @@ sympathetic trunk http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png - + - + FMA-abduced-lr @@ -29119,7 +29117,7 @@ - + A merocrine, unbranched, unbranched, coiled, tubular gland sweat gland. In humans, distributed over almost all of the body surface, and promote cooling by evaporation of their secretion. in mice, found only on footpads; in humans, entire body including soles and palms @@ -29143,7 +29141,7 @@ eccrine sweat gland - + @@ -29156,7 +29154,7 @@ - + FMA @@ -29199,7 +29197,7 @@ - + Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits. UBERON:0000425 BTO:0002364 @@ -29217,14 +29215,14 @@ gastric pit http://upload.wikimedia.org/wikipedia/commons/7/73/Illu_stomach_layers.jpg - + - + BTO @@ -29283,7 +29281,7 @@ - + The outermost layer of trophoblast, produced by cytotrophoblast where there is direct contact with maternal decidua rather than blood. The EVT cells travel into the decidua, reacting with NK cells and invading maternal blood vessels feeding the placenta, softening the walls and replacing the lining with fetal tissue, a process called conversion. BTO:0002366 FMA:86561 @@ -29293,14 +29291,14 @@ UBERON:0000426 extravillous trophoblast - + - + BTO @@ -29518,7 +29516,7 @@ - + A nucleus medially located within the ventral nuclei of the thalamus. BTO:0002469 EV:0100208 @@ -29533,14 +29531,14 @@ ventral intermediate nucleus of thalamus - + - + BTO-definition ZFA @@ -29576,7 +29574,7 @@ - + A group of nuclei located in the medial portion of the ventral thalamic nuclei. BTO:0002470 FMA:77795 @@ -29588,7 +29586,7 @@ UBERON:0000431 ventral medial complex of thalamus - + @@ -29601,7 +29599,7 @@ - + BTO-modified @@ -29642,7 +29640,7 @@ - + A portion of the nucleus of ansa lenticularis located medial to the posterior limb of the internal capsule, along the course of the ansa lenticularis and the inferior thalamic peduncle or as a separate nucleus within the internal capsule adjacent to the medial GLOBUS PALLIDUS (NeuroNames, http://rprcsgi.rprc. washington.edu/neuronames/ (September 28, 1998)). In non-primates, the entopeduncular nucleus is analogous to both the medial globus pallidus and the entopeduncular nucleus of human. BAMS:EN BTO:0002475 @@ -29659,14 +29657,14 @@ The term entopeduncular nucleus in human neuroanatomy refers to a portion of the nucleus of the ansa lenticularis described variously as located medial to the posterior limb of the internal capsule ( Riley-1943 ), along the course of the ansa lenticularis and the inferior thalamic peduncle ( Crosby-1962 ), or as a separate nucleus within the internal capsule adjacent to the medial segment of the globus pallidus ( Nomina-1983 ).[NN] endopeduncular nucleus - + - + NN @@ -29974,8 +29972,8 @@ - - + + @@ -29989,11 +29987,11 @@ UBERON:0000437 arachnoid barrier layer - + - + @@ -30006,13 +30004,13 @@ - + cjm - + FMA @@ -31103,16 +31101,16 @@ - - - + + + - + The paired glands located slightly posterior and to the left and right of the opening of the vagina in the superficial perineal pouch in females; they secrete mucus to lubricate the vagina and are homologous to bulbourethral (Cowper's) glands in males. resolve difference in WP vs MP, superficial vs deep perineal pouch @@ -31139,19 +31137,19 @@ major vestibular gland - + - + - + - + @@ -31164,25 +31162,25 @@ - + FMA - + FMA-abduced-lr - + Wikipedia - + Wikipedia @@ -31242,7 +31240,7 @@ - + @@ -31272,7 +31270,7 @@ minor vestibular gland - + @@ -31285,7 +31283,7 @@ - + FMA @@ -31373,7 +31371,7 @@ - + @@ -31415,14 +31413,14 @@ organism substance - + - + this relationship may be too strong and may be weakened in future @@ -32664,7 +32662,7 @@ - + @@ -32705,7 +32703,7 @@ basal lamina of epithelium https://upload.wikimedia.org/wikipedia/commons/6/65/Basal_lamina.jpg - + @@ -32718,7 +32716,7 @@ - + FMA @@ -33352,7 +33350,7 @@ - + The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum. FMA:15973 @@ -33371,7 +33369,7 @@ ileocecal valve http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray1075.png - + @@ -33390,7 +33388,7 @@ - + FMA @@ -33442,8 +33440,8 @@ - - + + A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery. FMA:20509 SCTID:279979000 @@ -33458,11 +33456,11 @@ suspensory ligament of duodenum http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray1042.png - + - + @@ -33475,13 +33473,13 @@ - + Obol - + Obol @@ -33534,8 +33532,8 @@ - - + + A muscle that arises from the lower half of the ligamentum nuchæ, from the spinous process of the seventh cervical vertebra, and from the spinous processes of the upper three or four thoracic vertebræ and inserts the mastoid process of the temporal bone, and into the rough surface on the occipital bone just below the lateral third of the superior nuchal line[WP,modified]. Extend, rotate, and laterally flex the head FMA:22653 @@ -33548,11 +33546,11 @@ splenius capitis http://upload.wikimedia.org/wikipedia/commons/5/51/Splenius.png - + - + @@ -33565,14 +33563,14 @@ - + Ligamentum nuchae spinous process of C7-T6 dbpedia - + Wikipedia:Mastoid_process @@ -34083,7 +34081,7 @@ - + @@ -34120,14 +34118,14 @@ abdomen - + - + MA @@ -34507,7 +34505,7 @@ - + Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue. Primary germ layer that is the outer of the embryonic germ layers and gives rise to epidermis and neural tissue.[AAO] The Bilateria are triploblastic (with true endoderm, mesoderm, and ectoderm) (...).[well established][VHOG] @@ -34545,14 +34543,14 @@ ectoderm http://upload.wikimedia.org/wikipedia/commons/1/19/Gray32.png - + - + Bgee:AN @@ -34605,7 +34603,7 @@ - + Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut. The Bilateria are triploblastic (with true endoderm, mesoderm, and ectoderm) (...).[well established][VHOG] endodermal @@ -34642,14 +34640,14 @@ http://upload.wikimedia.org/wikipedia/commons/c/c0/Endoderm2.png http://upload.wikimedia.org/wikipedia/commons/d/df/Gray10.png - + - + Bgee:AN @@ -34700,7 +34698,7 @@ - + The middle germ layer of the embryo, between the endoderm and ectoderm. Primary germ layer that is the middle of the embryonic germ layers.[AAO] @@ -34745,7 +34743,7 @@ mesoderm http://upload.wikimedia.org/wikipedia/commons/e/e8/Mesoderm.png - + @@ -34758,7 +34756,7 @@ - + Bgee:AN @@ -35112,7 +35110,7 @@ - + @@ -35158,7 +35156,7 @@ proctodeum https://github.com/obophenotype/uberon/issues/685 - + @@ -35171,7 +35169,7 @@ - + EHDAA2 @@ -35584,7 +35582,7 @@ - + @@ -35625,14 +35623,14 @@ posterior commissure http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png - + - + FMA @@ -35735,7 +35733,7 @@ - + One of the parts of a holometabolous insect larva that will become a portion of the outside of the adult insect during the pupal transformation. BTO:0004658 MAT:0000064 @@ -35750,7 +35748,7 @@ Though inaginal discs are sometimes described as “epithelial sacs”, we do not classify them as such, because an “epithelial sac” is defined in Uberon as being a single epithelium, whereas imaginal discs are made of several epithelia with distinct properties. imaginal disc - + @@ -35763,7 +35761,7 @@ - + Wikipedia @@ -35805,7 +35803,7 @@ - + @@ -35865,14 +35863,14 @@ cranial nerve II - + - + EHDAA2 @@ -36002,7 +36000,7 @@ - + The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]. FMA:52638 NCIT:C32638 @@ -36017,14 +36015,14 @@ frontal nerve (branch of ophthalmic) http://upload.wikimedia.org/wikipedia/commons/4/45/Gray787.png - + - + FMA @@ -36102,9 +36100,9 @@ - - - + + + @@ -36158,15 +36156,15 @@ stomach https://upload.wikimedia.org/wikipedia/commons/e/e0/Stomach_diagram.svg - + - + - + @@ -36185,20 +36183,20 @@ - + Wikipedia - + absent in lampreys and hagfishes ISBN:0073040584 - + ISBN:0486692132 @@ -36290,7 +36288,7 @@ - + A membranous fold of the heart that prevents reflux of fluid. @@ -36327,14 +36325,14 @@ cardiac valve - + - + PMID:15797462 @@ -36385,8 +36383,8 @@ - - + + @@ -36433,11 +36431,11 @@ aorta https://upload.wikimedia.org/wikipedia/commons/9/91/Aorta_scheme.jpg - + - + @@ -36450,13 +36448,13 @@ - + EHDAA2 - + MA-modified @@ -36532,7 +36530,7 @@ - + @@ -36545,7 +36543,7 @@ - + @@ -36601,24 +36599,24 @@ Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepithelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" DOI:10.1101/gad.1485706 heart - + - + - + MA - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -36824,8 +36822,8 @@ - - + + The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch. AAO has minor and major gracilis, which merge together, attaching the pelvic rim to the tibiofibula - this could be grouped with the mammalian gracilis at some level; note the current insertion site is 'tibia' which would be modified for amphibian tibiafibula @@ -36848,11 +36846,11 @@ gracilis http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + @@ -36865,14 +36863,14 @@ - + ischiopubic ramus dbpedia - + pes anserinus dbpedia @@ -37011,7 +37009,7 @@ - + @@ -37036,7 +37034,7 @@ - + The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]. requires review for applicability to invertebrate structures, e.g. synganglion @@ -37097,11 +37095,11 @@ brain - + - + @@ -37114,13 +37112,13 @@ - + FMA - + Bgee:AN @@ -37214,9 +37212,9 @@ - - - + + + @@ -37288,15 +37286,15 @@ http://upload.wikimedia.org/wikipedia/commons/7/7b/Cerebral_Cortex_location.jpg http://upload.wikimedia.org/wikipedia/commons/9/9a/Brainmaps-macaque-hippocampus.jpg - + - + - + @@ -37309,21 +37307,21 @@ - + GO ISBN:0471888893 - + FMA MA - + Wikipedia @@ -37844,9 +37842,9 @@ - - - + + + @@ -37871,7 +37869,7 @@ - + @@ -37927,44 +37925,44 @@ cornea http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + - + - + - + - + MA - + MA - + FMA-isa - + definitional @@ -38158,10 +38156,10 @@ - - - - + + + + The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates. @@ -38212,44 +38210,44 @@ retina http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png - + - + - + - + - + FMA - + FMA - + FMA - + EHDAA2 @@ -38420,8 +38418,8 @@ - - + + @@ -38457,24 +38455,24 @@ eye - + - + - + PMID:21062451 - + PMID:21062451 @@ -38725,8 +38723,8 @@ - - + + @@ -38782,11 +38780,11 @@ sternum http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg - + - + @@ -38799,13 +38797,13 @@ - + FMA - + ISBN:0073040584 @@ -38884,15 +38882,15 @@ - - + + - + @@ -38933,15 +38931,15 @@ humerus http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg - + - + - + @@ -38954,19 +38952,19 @@ - + FMA - + FMA - + definitional @@ -39061,7 +39059,7 @@ - + @@ -39116,14 +39114,14 @@ pleura http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png - + - + https://github.com/obophenotype/uberon/issues/86 @@ -39361,7 +39359,7 @@ - + @@ -39392,7 +39390,7 @@ trochanter - + @@ -39405,7 +39403,7 @@ - + MA @@ -39460,15 +39458,15 @@ - - + + - + @@ -39516,15 +39514,15 @@ femur http://upload.wikimedia.org/wikipedia/commons/7/73/Gray252.png - + - + - + @@ -39537,19 +39535,19 @@ - + FMA - + FMA - + definitional @@ -39789,7 +39787,7 @@ - + @@ -39815,14 +39813,14 @@ metatarsus region - + - + PHENOSCAPE:ni @@ -40068,7 +40066,7 @@ - + @@ -40137,14 +40135,14 @@ pons http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png - + - + neuronames @@ -40212,8 +40210,8 @@ - - + + An intromittent organ in certain biologically male organisms. In placental mammals, this also serves as the organ of urination. penile phallic @@ -40249,11 +40247,11 @@ penis http://upload.wikimedia.org/wikipedia/commons/8/87/Labelled_flaccid_penis.jpg - + - + @@ -40266,13 +40264,13 @@ - + Wikipedia - + EHDAA2 @@ -41202,8 +41200,8 @@ - - + + @@ -41245,11 +41243,11 @@ http://upload.wikimedia.org/wikipedia/commons/1/1b/Illu_repdt_female.jpg http://upload.wikimedia.org/wikipedia/commons/a/a4/Vaginal_opening_-_english_description.jpg - + - + @@ -41262,13 +41260,13 @@ - + FMA - + Wikipedia @@ -41729,7 +41727,7 @@ - + @@ -41799,14 +41797,14 @@ vas deferens http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg - + - + FMA @@ -41929,7 +41927,7 @@ - + Tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition[WP]. TODO - check cuticle vs exoskeleton. Note that GO has a very generic definition of cuticle. See also arthropod-anatomy ontology. Note in ncit Cuticle is a plant part @@ -41945,14 +41943,14 @@ cuticle - + - + Rieger - Evolution of the Cuticle in the Lower Eumetazoa @@ -42797,8 +42795,8 @@ - - + + The head of the radius has a cylindrical form, and on its upper surface is a shallow cup or fovea for articulation with the capitulum (or capitellum) of the humerus. The circumference of the head is smooth; it is broad medially where it articulates with the radial notch of the ulna, narrow in the rest of its extent, which is embraced by the annular ligament. The deepest point in the fovea is not axi-symmetric with the long axis of the radius, creating a cam effect during pronation and supination[WP]. FMA:33773 SCTID:181941003 @@ -42812,11 +42810,11 @@ head of radius http://upload.wikimedia.org/wikipedia/commons/4/47/Gray214.png - + - + @@ -42829,13 +42827,13 @@ - + FMA - + FMA @@ -43154,7 +43152,7 @@ - + @@ -43214,14 +43212,14 @@ http://upload.wikimedia.org/wikipedia/commons/b/b2/TE-Nervous_system_diagram.svg http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png - + - + Bgee:AN @@ -43308,7 +43306,7 @@ - + The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the neural tube derivatives: the brain and spinal cord. In invertebrates it includes central ganglia plus nerve cord. Part of the nervous system which includes the brain and spinal cord.[AAO] @@ -43355,7 +43353,7 @@ central nervous system - + @@ -43369,7 +43367,7 @@ - + Bgee:AN @@ -43928,7 +43926,7 @@ - + A nerve that transmits from sensory receptors on the surface of the body to the central nervous system. AEO:0000201 EHDAA2:0003200 @@ -43943,14 +43941,14 @@ sensory nerve - + - + AEO @@ -44526,8 +44524,8 @@ - - + + @@ -44582,11 +44580,11 @@ strand of hair http://upload.wikimedia.org/wikipedia/commons/2/25/Gray945.png - + - + @@ -44599,13 +44597,13 @@ - + FMA - + FMA @@ -44682,8 +44680,8 @@ - - + + A sac-like expansion of the ventral wall of the intestine, narrowed into a yolk stalk near the body[Hyman's]. Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes[WP]. consider splitting class One of the extraembryonic fetal membranes that balloons out from the fetal midgut. [TFD][VHOG] @@ -44714,11 +44712,11 @@ yolk sac http://upload.wikimedia.org/wikipedia/commons/1/17/Gray22.png - + - + @@ -44737,13 +44735,13 @@ - + ISBN:0073040584 - + ISBN:0073040584 @@ -44896,7 +44894,7 @@ - + A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED]. A funnel-shaped fibromuscular tube that conducts food to the ESOPHAGUS, and air to the LARYNYX and LUNGS. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH:A03.867]. Anatomical cavity bounded by the derivatives of the branchial arches.[AAO] @@ -44938,14 +44936,14 @@ Consider generalizing to deuterostome pharynx chordate pharynx - + - + EHDAA2 @@ -45386,7 +45384,7 @@ - + @@ -45423,14 +45421,14 @@ hindgut http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray472.png - + - + Wikipedia @@ -45808,15 +45806,15 @@ - + - - + + @@ -45868,15 +45866,15 @@ rectum http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif - + - + - + @@ -45890,19 +45888,19 @@ - + MA - + EHDAA2 - + ISBN:0073040584 @@ -45941,7 +45939,7 @@ - + A system of neurons that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system. currently intended for invert structure; alt definitions include: organs in which intimate relationships between axons and terminal blood vessels are established BTO:0002106 @@ -45957,14 +45955,14 @@ brain areas from which substances enter blood for example, the neurohypophysis from which oxytocin and vasopressin enter blood. arthropod neurohemal organ - + - + BTO @@ -46060,7 +46058,7 @@ - + @@ -46080,14 +46078,14 @@ will be ceded to arthropod anatomy ontology corpus cardiacum - + - + BTO-modified @@ -46112,8 +46110,8 @@ - - + + One of a pair of separate or fused bodies in many insects that are sometimes closely associated with the corpora cardiaca and that secrete hormones (as juvenile hormone)[BTO]. In Lepidoptera species, the corpus allatum acts as a release site for prothoracicotropic hormone which is generated by the brain In many Diptera species, the corpus allatum is fused with the corpus cardiacum, forming Weismann's ring @@ -46131,11 +46129,11 @@ will be ceded to arthropod anatomy ontology corpus allatum - + - + @@ -46148,13 +46146,13 @@ - + BTO-modified - + Wikipedia @@ -46185,9 +46183,9 @@ - - - + + + Prominent lobed neuropils found in annelids and all arthropods except crustaceans. They are thought to be involved in olfactory associative learning and memory[MESH] Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes. @@ -46209,34 +46207,34 @@ mushroom body - + - + - + - + annelids and arthropods - + Wikipedia - + Wikipedia @@ -46273,7 +46271,7 @@ - + @@ -46292,14 +46290,14 @@ will be ceded to arthropod anatomy ontology pars intercerebralis - + - + FBbt @@ -46374,7 +46372,7 @@ - + @@ -46416,14 +46414,14 @@ flocculus - + - + FMA-abduced-lr @@ -46546,7 +46544,7 @@ - + @@ -46593,7 +46591,7 @@ ventral pancreatic duct http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png - + @@ -46606,7 +46604,7 @@ - + EHDAA2 @@ -46955,7 +46953,7 @@ - + A zone of skin that is part of a back [Automatically generated definition]. TODO - distinguish between entire skin of region and arbitrary zone of skin on region EMAPA:36392 @@ -46972,7 +46970,7 @@ skin of back - + @@ -46985,7 +46983,7 @@ - + MA @@ -47025,7 +47023,7 @@ - + The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]. Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG] @@ -47049,14 +47047,14 @@ head of pancreas http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg - + - + EHDAA2-inferred WP @@ -47096,15 +47094,15 @@ - - + + - + A terminal branch of the left or right common carotid artery which supplies oxygenated blood to to the throat, neck glands, tongue, face, mouth, ear, scalp and dura mater of the meninges[MP]. not homologous to the external carotid of zebrafish (Goodrich, 1958) - http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html; check XAO @@ -47137,15 +47135,15 @@ https://sourceforge.net/tracker/?func=detail&aid=3486863&group_id=76834&atid=1127722 http://upload.wikimedia.org/wikipedia/commons/1/13/External_carotid_a.gif - + - + - + @@ -47158,19 +47156,19 @@ - + FMA - + EHDAA2 - + FMA @@ -47459,14 +47457,14 @@ - + - + @@ -47502,11 +47500,11 @@ pericardial cavity - + - + @@ -47519,13 +47517,13 @@ - + FMA - + Wikipedia @@ -48221,7 +48219,7 @@ - + @@ -48253,7 +48251,7 @@ endocardium of ventricle - + @@ -48266,7 +48264,7 @@ - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -48409,7 +48407,7 @@ - + @@ -48437,14 +48435,14 @@ myocardium of ventricle - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -48889,9 +48887,9 @@ - - - + + + Skeletal element within the mouth (or in some species, upper part of the digestive tract) that is composed of dentine and is used in procuring or masticating food. we place ZFA ctb 5 tooth here for now. Consider changing name from calcaeeous tooth. Note that sea cucumbers develop calcareous tooth-like structures @@ -48935,34 +48933,34 @@ calcareous tooth http://upload.wikimedia.org/wikipedia/commons/1/14/Teeth_by_David_Shankbone.jpg - + - + - + - + XAO-modified - + ZFA-modified - + cjm @@ -49125,7 +49123,7 @@ - + The second vertebral bone in the vertebral column. Vertebra that is posteriorly adjacent to vertebra 1.[TAO] @@ -49161,14 +49159,14 @@ vertebral bone 2 - + - + FMA @@ -49691,8 +49689,8 @@ - - + + The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]. EHDAA2:0001425 @@ -49718,11 +49716,11 @@ pectoralis minor https://upload.wikimedia.org/wikipedia/commons/5/5d/Pectoralis_minor.png - + - + @@ -49735,14 +49733,14 @@ - + third to fifth ribs near their costal cartilages dbpedia - + medial border and superior surface of the coracoid process of the scapula dbpedia @@ -49784,7 +49782,7 @@ - + The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]. Vein which collects blood from the muscles of the head and tongue and the thyroid gland.[AAO] @@ -49810,14 +49808,14 @@ external jugular vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -49968,14 +49966,14 @@ - + - + A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control. The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]. @@ -50015,24 +50013,24 @@ diaphragm - + - + - + PMID:23586979 - + definitional @@ -50094,8 +50092,8 @@ - - + + The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]. @@ -50115,24 +50113,24 @@ anterior jugular vein http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png - + - + - + Wikipedia - + FMA Wikipedia @@ -50174,15 +50172,15 @@ - + - - + + A paired dermal or endochondral bone that is part of the pectoral girdle. The clavicle may be in contact with the interclavicle or coracoid and forms an attachment site for pectoral musculature. [PHENOSCAPE:ad]. Slender, paired bones of intramembranous origin that invest the anterior margins of the procoracoids.[AAO] @@ -50218,15 +50216,15 @@ clavicle bone https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg - + - + - + @@ -50239,21 +50237,21 @@ - + FMA VSAO - + mah ISBN:978-0-12-319060-4 - + from secondary cartilage of fusion ISBN:978-0-12-319060-4 @@ -50334,8 +50332,8 @@ - - + + A superficial vein of the upper limb that communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,modified]. EMAPA:25075 @@ -50356,24 +50354,24 @@ cephalic vein http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png - + - + - + FMA/obol - + FMA/obol @@ -50410,10 +50408,10 @@ - - - - + + + + The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]. The sternohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the sternum.[FEED] @@ -50440,19 +50438,19 @@ sternohyoid muscle https://upload.wikimedia.org/wikipedia/commons/6/67/Sternohyoid_muscle.PNG - + - + - + - + @@ -50465,27 +50463,27 @@ - + inferred dbpedia - + dbpedia - + manubrium of sternum dbpedia - + dbpedia @@ -50553,9 +50551,9 @@ - - - + + + The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]. The omohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the scapula.[FEED] @@ -50578,15 +50576,15 @@ omohyoid muscle http://upload.wikimedia.org/wikipedia/commons/b/b0/Gray1210.png - + - + - + @@ -50599,20 +50597,20 @@ - + inferred dbpedia - + dbpedia - + dbpedia @@ -50667,10 +50665,10 @@ - - - - + + + + The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]. The sternothyroid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the thyroid cartilage and the sternum.[FEED] @@ -50695,19 +50693,19 @@ sternothyroid muscle http://upload.wikimedia.org/wikipedia/commons/1/10/Sternothyroideus.png - + - + - + - + @@ -50720,26 +50718,26 @@ - + inferred dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -50801,9 +50799,9 @@ - - - + + + The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]. The thyrohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by C1 and Cranial Nerve XII ; it attaches to the thyroid cartilage and the hyoid apparatus.[FEED] @@ -50826,15 +50824,15 @@ thyrohyoid muscle https://upload.wikimedia.org/wikipedia/commons/a/aa/Thyrohyoid_muscle.PNG - + - + - + @@ -50847,21 +50845,21 @@ - + first cervical nerve via hypoglossal nerve dbpedia - + first cervical nerve via hypoglossal nerve dbpedia - + dbpedia @@ -50946,10 +50944,10 @@ - - - - + + + + The respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib. Inspiration by active expansion of the thorax evolved later, in the ancestor of reptiles, birds, and mammals. This was powered originally by the intercostal muscles (as in lizards or crocodilians) and later (in mammals only) by a muscular diaphragm.[well established][VHOG] BTO:0005281 @@ -50979,45 +50977,45 @@ intercostal muscle http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + - + - + - + - + dbpedia - + EHDAA2 - + ribs 1-11 dbpedia - + ribs 2-12 dbpedia @@ -51060,18 +51058,18 @@ - - + + - - - - + + + + The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]. In humans it inserts along a roughened line deep in the groove. In other mammals (most, I believe) it is an actual projection, the latissimus dorsi process [FEED:rd] [https://github.com/obophenotype/uberon/issues/1192] @@ -51101,66 +51099,66 @@ latissimus dorsi muscle https://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png - + - + - + - + - + - + - + EHDAA2 - + EHDAA2 - + spinous processes of thoracic T7-T12 thoracolumbar fascia iliac crest and inferior 3 or 4 ribs inferior angle of scapula dbpedia - + floor of intertubercular groove of the humerus dbpedia - + dbpedia - + dbpedia @@ -51474,7 +51472,7 @@ - + The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]. Check left vs right in mouse and human The portion of the right lobe of the liver between the fissure of the ligamentum venosum and the bare area of the liver. It ends into the superior recess of the lesser peritoneal sac. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] @@ -51510,7 +51508,7 @@ caudate lobe of liver http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png - + @@ -51523,7 +51521,7 @@ - + FMA @@ -51617,7 +51615,7 @@ - + A lobe of tissue that is part of a thyroid gland. Thus, a thyroid capable of forming iodotyrosines and iodothyronines is present in all vertebrates. (...) Certain morphologic changes occur after the biochemical evolution of the thyroid has ceased. In the adult lamprey and in most bony fishes, the gland is not encapsulated. (...) In cartilaginous fish, the thyroid is encapsulated. In the higher vertebrate forms, the thyroid is a one- or two-lobed encapsulated structure.[well established][VHOG] EHDAA2:0002032 @@ -51640,14 +51638,14 @@ lobe of thyroid gland http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png - + - + FMA-abduced-lr @@ -51808,9 +51806,9 @@ - - - + + + The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]. EMAPA:37654 FMA:13370 @@ -51830,35 +51828,35 @@ longus colli muscle https://upload.wikimedia.org/wikipedia/commons/a/a6/Longus_colli.png - + - + - + - + FMA-modified - + Transverse processes of C-5 to T-3 dbpedia - + dbpedia @@ -51911,9 +51909,9 @@ - - - + + + The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebræ. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]. EMAPA:37738 @@ -51935,35 +51933,35 @@ scalenus medius https://upload.wikimedia.org/wikipedia/commons/f/fa/Scalenus_medius.png - + - + - + - + Ventral rami of the third to eighth cervical spinal nerves dbpedia - + dbpedia - + dbpedia @@ -52006,7 +52004,7 @@ - + The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the serratus ventralis. It is occasionally blended with the Scalenus medius. [WP,unvetted]. EMAPA:37737 @@ -52027,14 +52025,14 @@ scalenus posterior https://upload.wikimedia.org/wikipedia/commons/f/f3/Scalenus_posterior.png - + - + transverse processes of C4 - C6 dbpedia @@ -52094,11 +52092,11 @@ - - - - - + + + + + The serratus ventralis is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]. EHDAA2:0001832 @@ -52125,57 +52123,57 @@ serratus ventralis https://upload.wikimedia.org/wikipedia/commons/c/c6/Serratus_anterior.png - + - + - + - + - + - + long thoracic nerve dbpedia - + EHDAA2 - + fleshy slips from the outer surface of upper 8 or 9 ribs dbpedia - + costal aspect of medial margin of the scapula dbpedia - + dbpedia @@ -52223,15 +52221,15 @@ - + - - + + The serratus dorsalis superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebræ and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]. EMAPA:37698 FMA:13401 @@ -52250,15 +52248,15 @@ serratus dorsalis superior muscle - + - + - + @@ -52271,21 +52269,21 @@ - + 2 thru 5 in human dbpedia - + C7 thru T3 in human dbpedia - + rib 2 thru 5 in human dbpedia @@ -52332,9 +52330,9 @@ - - - + + + A muscle that originates from the vertebrae and inserts in the ribs. EMAPA:37697 FMA:13402 @@ -52355,15 +52353,15 @@ serratus dorsalis inferior muscle https://upload.wikimedia.org/wikipedia/commons/a/aa/Serratus_posterior.PNG - + - + - + @@ -52376,21 +52374,21 @@ - + T9 through T12 in human dbpedia - + T11 through L2 in human dbpedia - + inferior border of 9th thru 12th in humans dbpedia @@ -52437,16 +52435,16 @@ - + - - - + + + A paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]. TODO: sternocleidomastoid = sternomastoid + Cleidomastoideus. Origin: from manubrium sterni (sterno) and clavicle (cleido) and it's insertion at the mastoid process of the temporal bone. @@ -52485,47 +52483,47 @@ http://upload.wikimedia.org/wikipedia/commons/6/61/Gray512.png http://upload.wikimedia.org/wikipedia/commons/f/f9/Gray512.svg - + - + - + - + - + sensory: cervical plexus dbpedia - + manubrium sterni medial portion of the clavicle dbpedia - + manubrium sterni medial portion of the clavicle dbpedia - + Wikipedia:Mastoid_process @@ -52642,8 +52640,8 @@ - - + + @@ -52656,7 +52654,7 @@ - + The subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]. EHDAA2:0001943 @@ -52681,34 +52679,34 @@ http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + - + - + - + Wikipedia - + EHDAA2 - + lesser tubercle of humerus dbpedia @@ -52761,7 +52759,7 @@ - + @@ -52821,14 +52819,14 @@ vertebral column - + - + cjm @@ -53007,14 +53005,14 @@ - + - + The parathyroid gland is an endocrine gland for secretion of parathyroid hormone, usually found as a pair, embedded in the connective tissue capsule on the posterior surface of the thyroid gland. Parathyroid regulates calcium and phosphorous metabolism. Any one of several small structures, usually four, attached to the dorsal surfaces of the lateral lobes of the thyroid gland. [TFD][VHOG] Either of the two pairs of small, spherical, encapsulated glands which develop from ventral growths of the third and fourth pharyngeal pouches and are closely associated with the external jugular veins. Calcitonin and parathyroid hormone are secreted by these glands.[AAO] @@ -53050,24 +53048,24 @@ parathyroid gland - + - + - + PMID:16313389 - + Wikipedia @@ -53600,7 +53598,7 @@ - + Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum[FMA]. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri). AEO:0000111 BTO:0002422 @@ -53625,14 +53623,14 @@ mesothelium http://upload.wikimedia.org/wikipedia/commons/2/25/Mesothelium_peritoneal_wash_high_mag.jpg - + - + FMA @@ -53740,7 +53738,7 @@ - + In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]. BTO:0002783 @@ -53763,14 +53761,14 @@ superior mesenteric vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png - + - + Wikipedia:Vitelline_vein @@ -53805,7 +53803,7 @@ - + @@ -53832,7 +53830,7 @@ common iliac vein https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif - + @@ -53845,7 +53843,7 @@ - + FMA-abduced-lr @@ -54109,7 +54107,7 @@ - + Vein that carries blood away from the liver[ZFA]. todo - add developmental relationships for other taxa @@ -54140,14 +54138,14 @@ hepatic vein http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png - + - + FMA-abduced-lr @@ -54719,8 +54717,8 @@ - - + + The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]. Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG] @@ -54744,24 +54742,24 @@ tail of pancreas http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg - + - + - + FMA - + EHDAA2 @@ -54827,8 +54825,8 @@ - - + + @@ -54870,11 +54868,11 @@ http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png - + - + @@ -54887,13 +54885,13 @@ - + FMA - + EHDAA2 @@ -54941,16 +54939,16 @@ - - - + + + - + @@ -54999,44 +54997,44 @@ caecum http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg - + - + - + - + - + MA - + EHDAA2 - + Wikipedia - + Wikipedia @@ -55126,8 +55124,8 @@ - - + + A blind-ended tube connected to the cecum, from which it develops embryologically[WP]. @@ -55170,24 +55168,24 @@ vermiform appendix http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png - + - + - + http://orcid.org/0000-0002-1572-1316 - + Wikipedia @@ -55253,7 +55251,7 @@ - + @@ -55308,7 +55306,7 @@ colon - + @@ -55322,7 +55320,7 @@ - + FMA @@ -55387,7 +55385,7 @@ - + Section of colon which is distal to the cecum and proximal to the transversecolon.[FMA,modified]. in MA, this is a subclass of colon @@ -55415,7 +55413,7 @@ ascending colon http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg - + @@ -55428,7 +55426,7 @@ - + Wikipedia @@ -55477,7 +55475,7 @@ - + The proximal-distal subdivision of colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure. Continuous with the descending colon[BTO,modified]. BTO:0000272 @@ -55503,7 +55501,7 @@ transverse colon http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg - + @@ -55516,7 +55514,7 @@ - + Wikipedia @@ -55552,7 +55550,7 @@ - + The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon. BTO:0000641 @@ -55578,7 +55576,7 @@ descending colon http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray1223.png - + @@ -55591,7 +55589,7 @@ - + Wikipedia @@ -55626,7 +55624,7 @@ - + The part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity. BTO:0000645 @@ -55656,7 +55654,7 @@ sigmoid colon http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg - + @@ -55669,7 +55667,7 @@ - + Wikipedia @@ -55905,7 +55903,7 @@ - + @@ -55942,14 +55940,14 @@ cardia of stomach https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg - + - + ISBN:0073040584 @@ -56105,7 +56103,7 @@ - + @@ -56159,7 +56157,7 @@ pyloric antrum http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg - + @@ -56172,7 +56170,7 @@ - + Wikipedia @@ -56639,7 +56637,7 @@ - + @@ -56656,7 +56654,7 @@ portal lobule - + @@ -56669,7 +56667,7 @@ - + MA MP @@ -56692,7 +56690,7 @@ - + @@ -56718,7 +56716,7 @@ UBERON:0001172 hepatic acinus - + @@ -56731,7 +56729,7 @@ - + cjm @@ -56956,10 +56954,10 @@ - - - - + + + + @@ -56994,19 +56992,19 @@ common hepatic duct http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg - + - + - + - + @@ -57019,25 +57017,25 @@ - + MA - + Wikipedia - + Wikipedia - + definitional @@ -57278,7 +57276,7 @@ - + Anatomical cavity bounded by visceral and parietal peritoneum. The potential space between the parietal and visceral layers of the peritoneum, which are normally in contact. The peritoneal cavity is divided into the greater and lesser sac. The greater sac is the peritoneal cavity, and the lesser sac is the omental bursa. [TFD][VHOG] In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes) Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] @@ -57302,14 +57300,14 @@ peritoneal cavity - + - + Wikipedia @@ -57368,8 +57366,8 @@ - - + + classified as a cavity in EHDAA2, organ segment in FMA. We hedge and use a union UBERON:0006299 EHDAA2:0001958 @@ -57388,24 +57386,24 @@ UBERON:0001180 superior recess of lesser sac - + - + - + EMAPA - + EHDAA2 @@ -57692,7 +57690,7 @@ - + One of two laterally paired arteries that supplies the kidneys. These are large arteries that branch from the dorsal aorta in primitive vertebrates. renal arteries vary widely even in humans. Sub-structures should be checked for taxon variability. @@ -57730,14 +57728,14 @@ renal artery http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png - + - + dorsal aorta in Kardong Wikipedia @@ -57904,7 +57902,7 @@ - + One of a pair of arteries that is a branch of the abdominal aorta that supplies blood to a male gonad. EMAPA:18621 @@ -57929,14 +57927,14 @@ testicular artery http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png - + - + Wikipedia @@ -58185,7 +58183,7 @@ - + The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]. EHDAA2:0000311 @@ -58207,7 +58205,7 @@ common iliac artery http://upload.wikimedia.org/wikipedia/commons/6/6e/Iliac_artery_bifurcation_and_aorta.PNG - + @@ -58220,7 +58218,7 @@ - + Wikipedia @@ -60158,14 +60156,14 @@ - + - + The protruding lymphoid tissue located on the mucosa of the intestine that is composed of densely packed B cell follicles. Reptiles have accumulations of lymphocytes in their guts that may be primitive Peyer's patches (Zapata and Solas). @@ -60193,11 +60191,11 @@ Peyer's patch - + - + @@ -60211,13 +60209,13 @@ - + check this - + PMID:PMID:20181529 @@ -60290,9 +60288,9 @@ - - - + + + @@ -60324,15 +60322,15 @@ duodenal gland - + - + - + @@ -60351,19 +60349,19 @@ - + MA-inferred - + FMA, modified - + unclear for Aves ISBN:9780521617147 @@ -60418,7 +60416,7 @@ - + @@ -60470,7 +60468,7 @@ intestinal villus http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg - + @@ -60483,7 +60481,7 @@ - + ZFA @@ -60579,7 +60577,7 @@ - + The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]. see also MA:0002165 ! lieno-pancreatic vein @@ -60597,14 +60595,14 @@ pancreatic tributary of splenic vein - + - + FMA/obol @@ -60648,7 +60646,7 @@ - + A blood vessel that drains blood from the large intestine that usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]. BTO:0002782 @@ -60671,14 +60669,14 @@ inferior mesenteric vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png - + - + FMA/obol @@ -60724,7 +60722,7 @@ - + A tributary of the superior mesenteric vein that drains the jejunum. EMAPA:37160 @@ -60738,7 +60736,7 @@ jejunal vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png - + @@ -60751,7 +60749,7 @@ - + FMA/obol @@ -60798,7 +60796,7 @@ - + The veins that drain blood from the ileum into the superior mesenteric vein. EMAPA:37149 @@ -60812,14 +60810,14 @@ ileal vein - + - + FMA Wikipedia @@ -60975,9 +60973,9 @@ - - - + + + An abdominal muscle that inserts on the last rib and transverse processes of lumbar vertebrae. It is irregular and quadrilateral in shape, and broader below than above. EMAPA:18524 FMA:15569 @@ -60993,36 +60991,36 @@ quadratus lumborum http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png - + - + - + - + Last rib and transverse processes of lumbar vertebrae dbpedia - + Last rib and transverse processes of lumbar vertebrae dbpedia - + Last rib and transverse processes of lumbar vertebrae dbpedia @@ -61060,7 +61058,7 @@ - + The lateral abdominal wall muscle that is deep to the internal oblique. One of a pair of transverse abdominal muscles that is the anterolateral muscle of the abdomen, lying immediately under the internal abdominal oblique. [TFD][VHOG] @@ -61097,7 +61095,7 @@ transversus abdominis muscle http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg - + @@ -61110,7 +61108,7 @@ - + dbpedia @@ -61334,14 +61332,14 @@ - + - + @@ -61393,24 +61391,24 @@ renal pelvis https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg - + - + - + MA - + FMA @@ -61456,7 +61454,7 @@ - + @@ -61489,14 +61487,14 @@ cortex of kidney https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg - + - + FMA @@ -61686,8 +61684,8 @@ - - + + @@ -61735,25 +61733,25 @@ renal corpuscle https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg - + - + - + MA ZFA - + FMA @@ -61853,7 +61851,7 @@ - + @@ -61899,14 +61897,14 @@ glomerular capsule http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg - + - + Wikipedia @@ -62005,10 +62003,10 @@ - + - - + + @@ -62047,7 +62045,7 @@ nephron tubule - + @@ -62056,18 +62054,18 @@ - + - + - + GO MA ZFA @@ -62081,13 +62079,13 @@ - + ZFA - + checkme @@ -62128,14 +62126,14 @@ - + - + @@ -62177,25 +62175,25 @@ collecting duct of renal tubule - + - + - + checkme GO - + FMA @@ -62411,7 +62409,7 @@ - + @@ -62471,14 +62469,14 @@ adrenal cortex http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png - + - + Wikipedia @@ -62531,16 +62529,16 @@ - - + + - - + + @@ -62583,45 +62581,45 @@ adrenal medulla http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png - + - + - + - + - + FMA - + FMA - + ISBN:0073040584 https://github.com/obophenotype/uberon/wiki/The-neural-crest - + Wikipedia @@ -62739,7 +62737,7 @@ - + @@ -62769,14 +62767,14 @@ UBERON:0001238 lamina propria of small intestine - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -63696,7 +63694,7 @@ - + @@ -63728,7 +63726,7 @@ interlobular bile duct - + @@ -63742,7 +63740,7 @@ - + FMA MA MP @@ -63787,8 +63785,8 @@ - - + + A ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]. in FMA this is a subclass of mesentery. In MA it is a subclass of ligament, we infer and assert this is a nonskeletal ligament EHDAA2:0000499 @@ -63809,24 +63807,24 @@ falciform ligament - + - + - + FMA-modified - + MA @@ -63952,9 +63950,9 @@ - - - + + + @@ -63989,35 +63987,35 @@ spleen lymphoid follicle - + - + - + - + CL:tm MA - + FMA - + FMA @@ -64259,7 +64257,7 @@ - + An adventitia that is part of a ureter. EMAPA:28114 FMA:15892 @@ -64275,14 +64273,14 @@ UBERON:0001252 adventitia of ureter - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -64331,8 +64329,8 @@ - - + + A lamina propria that is part of a ureter [Automatically generated definition]. EMAPA:28841 @@ -64349,25 +64347,25 @@ lamina propria of ureter - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -64465,14 +64463,14 @@ - + - + Distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP]. @@ -64517,11 +64515,11 @@ urinary bladder https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg - + - + @@ -64534,13 +64532,13 @@ - + FMA - + upper part of UG sinus @@ -65024,7 +65022,7 @@ - + A serous membrane that is part of a urinary bladder [Automatically generated definition]. TODO - check serosa/peritoneum EMAPA:28661 @@ -65047,14 +65045,14 @@ UBERON:0001260 serosa of urinary bladder - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -65121,7 +65119,7 @@ - + @@ -65152,14 +65150,14 @@ lamina propria of urinary bladder - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -65344,7 +65342,7 @@ - + @@ -65375,14 +65373,14 @@ pancreatic acinus - + - + FMA @@ -65429,15 +65427,15 @@ - + - - + + An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]. @@ -65482,34 +65480,34 @@ pancreas https://upload.wikimedia.org/wikipedia/commons/7/7e/Blausen_0699_PancreasAnatomy2.png - + - + - + - + PMID:16417468 - + Wikipedia - + Wikipedia @@ -65572,7 +65570,7 @@ - + A trabecula that is part of a spleen. EMAPA:35808 @@ -65590,14 +65588,14 @@ trabecula of spleen - + - + FMA @@ -65625,7 +65623,7 @@ - + A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis. EMAPA:37752 @@ -65641,14 +65639,14 @@ splenic cord - + - + MA @@ -65790,8 +65788,8 @@ - - + + The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]. Cavity for the articulation of the proximal bone of the hind limb.[AAO] During the transformation from the osteolepiform fins to tetrapod limbs, the appendages and girdles underwent a number of radical changes. The pelvic girdle became a weight-bearing structure by evolution of an ischium, a full mesio-ventral contact between the two sides of the girdle, an ilium, and a contact between the vertebral column and the girdle through a sacral rib. Fore- and hindlimbs shifted laterally by reorientation of the glenoid and the acetabulum.[well established][VHOG] @@ -65819,11 +65817,11 @@ acetabular part of hip bone http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg - + - + @@ -65836,13 +65834,13 @@ - + Phenoscape - + FMA @@ -66059,7 +66057,7 @@ - + @@ -66098,7 +66096,7 @@ innominate bone http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png - + @@ -66111,7 +66109,7 @@ - + FMA @@ -66202,15 +66200,15 @@ - - + + - + @@ -66250,34 +66248,34 @@ ilium - + - + - + - + FMA - + VSAO - + cjm @@ -66367,14 +66365,14 @@ - + - + @@ -66407,11 +66405,11 @@ ischium http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg - + - + @@ -66436,13 +66434,13 @@ - + VSAO - + cjm @@ -66508,8 +66506,8 @@ - - + + @@ -66550,11 +66548,11 @@ pubis - + - + @@ -66579,13 +66577,13 @@ - + FMA - + VSAO @@ -67024,7 +67022,7 @@ - + @@ -67054,14 +67052,14 @@ liver parenchyma - + - + XAO @@ -67128,7 +67126,7 @@ - + @@ -67178,14 +67176,14 @@ hepatic sinusoid - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -67250,8 +67248,8 @@ - - + + @@ -67294,11 +67292,11 @@ intralobular bile duct - + - + @@ -67311,13 +67309,13 @@ - + FMA - + FMA @@ -67379,10 +67377,10 @@ - - - - + + + + @@ -67414,19 +67412,19 @@ bile canaliculus http://upload.wikimedia.org/wikipedia/commons/d/d9/Gray1094.png - + - + - + - + @@ -67440,25 +67438,25 @@ - + FMA - + BTO - + FMA - + FMA @@ -67589,15 +67587,15 @@ - - + + - + The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]. kidney terms require review for cross-vertebrate compatibility and developmental relationships. @@ -67630,34 +67628,34 @@ nephron http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + - + - + FMA - + definitional - + Bgee:AN @@ -67839,16 +67837,16 @@ - - - + + + - + @@ -67885,19 +67883,19 @@ proximal convoluted tubule http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + - + - + @@ -67910,26 +67908,26 @@ - + checkme - + MA uses subclass GOC:mtg_kidney_jan10 - + GO - + Wikipedia @@ -68082,7 +68080,7 @@ - + @@ -68109,7 +68107,7 @@ descending limb of loop of Henle http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + @@ -68122,7 +68120,7 @@ - + FMA @@ -68145,9 +68143,9 @@ - - - + + + @@ -68187,15 +68185,15 @@ proximal straight tubule - + - + - + @@ -68208,20 +68206,20 @@ - + MA - + MA uses subclass GOC:mtg_kidney_jan10 - + MA @@ -68270,7 +68268,7 @@ - + @@ -68311,7 +68309,7 @@ thick ascending limb of loop of Henle http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + @@ -68324,7 +68322,7 @@ - + GOC:dph MA-modified-from-isa @@ -68385,7 +68383,7 @@ - + @@ -68423,7 +68421,7 @@ distal convoluted tubule https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png - + @@ -68436,7 +68434,7 @@ - + EMAPA GO MA-modified-from-isa @@ -68576,7 +68574,7 @@ - + @@ -68605,14 +68603,14 @@ inner medulla of kidney - + - + GO:0072053 @@ -68672,7 +68670,7 @@ - + @@ -68722,14 +68720,14 @@ endometrium https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg - + - + FMA @@ -68804,7 +68802,7 @@ - + @@ -68860,7 +68858,7 @@ myometrium https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg - + @@ -68873,7 +68871,7 @@ - + FMA @@ -68940,7 +68938,7 @@ - + Outer serosa layer of the uterus. TODO - check for parallel structure with peritoneum EMAPA:37792 @@ -68964,14 +68962,14 @@ serosa of uterus https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -69031,9 +69029,9 @@ - - - + + + The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]. BTO:0001877 @@ -69053,15 +69051,15 @@ psoas major muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + - + @@ -69074,21 +69072,21 @@ - + Lumbar plexus via anterior branches of L1-L3 nerves dbpedia - + Transverse processes of T12-L5 and the lateral aspects of the discs between them dbpedia - + in the lesser trochanter of the femur dbpedia @@ -69140,7 +69138,7 @@ - + @@ -69170,14 +69168,14 @@ http://upload.wikimedia.org/wikipedia/commons/1/13/Anteriorglanspenis.jpg https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png - + - + Bgee:AN @@ -69231,7 +69229,7 @@ - + The external sac of skin that encloses the testes. It is an extension of the abdomen, and in placentals is located between the penis and anus. scrotal In elephants the testes remain in the abdomen @@ -69260,14 +69258,14 @@ http://upload.wikimedia.org/wikipedia/commons/a/a6/Scrotum_warm_and_cold.jpg http://upload.wikimedia.org/wikipedia/en/thumb/3/3e/HairedHumanScrotum.png/200px-HairedHumanScrotum.png - + - + Wikipedia @@ -69325,14 +69323,14 @@ - + - + @@ -69387,24 +69385,24 @@ epididymis http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_testis_surface.jpg - + - + - + FMA - + Wikipedia @@ -69629,7 +69627,7 @@ - + A spherical aggregation of cells in the ovary that contains a single oocyte[WP,modified]. TODO - align subtypes based on staging, which is taxon-specific @@ -69668,14 +69666,14 @@ http://upload.wikimedia.org/wikipedia/commons/c/ca/Human_ovarian_follicle.jpg https://upload.wikimedia.org/wikipedia/commons/e/e6/Primary_follicle-4.JPG - + - + Wikipedia @@ -69972,7 +69970,7 @@ - + The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]. todo - compare with EHDAA2. Check embryonic vs extraembryonic, developmental relationships @@ -70001,14 +69999,14 @@ https://github.com/obophenotype/uberon/issues/328 http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png - + - + cjm @@ -70600,7 +70598,7 @@ - + One the veins that drains the vaginal venous plexus, into the hypogastric veins. [WP,modified]. EMAPA:37796 @@ -70616,14 +70614,14 @@ vaginal vein http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png - + - + FMA/obol @@ -70669,7 +70667,7 @@ - + The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]. EMAPA:37152 @@ -70688,14 +70686,14 @@ iliolumbar vein http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png - + - + FMA/obol @@ -70730,7 +70728,7 @@ - + The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]. EMAPA:37677 @@ -70747,14 +70745,14 @@ obturator vein http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png - + - + FMA/obol @@ -70884,7 +70882,7 @@ - + The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]. EMAPA:36512 @@ -70904,14 +70902,14 @@ tibial nerve http://upload.wikimedia.org/wikipedia/commons/1/1a/Gray828.png - + - + FMA WP @@ -71049,7 +71047,7 @@ - + Muscle (organ) which is a part of the pelvis. Examples: levator ani,. EMAPA:18184 @@ -71066,7 +71064,7 @@ muscle of pelvis - + @@ -71078,7 +71076,7 @@ - + FMAdef @@ -71124,7 +71122,7 @@ - + The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]. the levator ani muscle acts to lower the tail, in animals that have one EMAPA:19165 @@ -71142,14 +71140,14 @@ levator ani muscle http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png - + - + inner surface of the side of the lesser pelvis dbpedia @@ -71191,8 +71189,8 @@ - - + + The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]. EMAPA:37482 @@ -71211,25 +71209,25 @@ coccygeus muscle http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png - + - + - + sacral nerves: S4 S5 or S3-S4 dbpedia - + Sacrospinous ligament and ischial spine dbpedia @@ -71736,8 +71734,8 @@ - - + + @@ -71767,25 +71765,25 @@ prostatic urethra http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png - + - + - + FMA MA - + FMA @@ -71888,8 +71886,8 @@ - - + + @@ -71925,24 +71923,24 @@ spongiose part of urethra http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png - + - + - + FMA - + FMA @@ -72192,15 +72190,15 @@ - - + + - + The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]. BTO:0005088 @@ -72220,15 +72218,15 @@ dorsal artery of penis http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png - + - + - + @@ -72241,19 +72239,19 @@ - + FMA - + BTO - + FMA @@ -72456,7 +72454,7 @@ - + @@ -72501,14 +72499,14 @@ http://upload.wikimedia.org/wikipedia/commons/4/49/Seminiferous_tubule_and_sperm_low_mag.jpg http://upload.wikimedia.org/wikipedia/commons/6/6a/Gray1145.png - + - + Wikipedia @@ -72681,7 +72679,7 @@ - + A membrane that surrounds or partially covers the vaginal opening. hymen EMAPA:37795 @@ -72702,14 +72700,14 @@ vaginal hymen http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png - + - + FMA @@ -72962,7 +72960,7 @@ - + @@ -73002,7 +73000,7 @@ coccyx http://upload.wikimedia.org/wikipedia/commons/9/91/Gray100.png - + @@ -73015,7 +73013,7 @@ - + FMA @@ -73162,15 +73160,15 @@ - - + + - + A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter. consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct. tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane[PMID 11237469] @@ -73202,34 +73200,34 @@ external acoustic meatus - + - + - + - + FMA - + PMID:11237469 - + EHDAA2 @@ -73287,7 +73285,7 @@ - + The anus and surrounding regions. Encompasses both internal and external regions, where present. Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] EFO:0000847 @@ -73313,14 +73311,14 @@ https://github.com/obophenotype/uberon/issues/507 http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png - + - + cjm @@ -73477,7 +73475,7 @@ - + The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]. EMAPA:37670 @@ -73494,14 +73492,14 @@ medial circumflex femoral artery http://upload.wikimedia.org/wikipedia/commons/c/c5/Circumflex_femoral_arteries.png - + - + FMA @@ -73530,8 +73528,8 @@ - - + + @@ -73568,24 +73566,24 @@ inferior rectal artery http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png - + - + - + FMA-abduced-lr - + FMA-abduced-lr @@ -73663,7 +73661,7 @@ - + The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinæi superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinæi superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinæi superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]. EMAPA:37107 @@ -73682,14 +73680,14 @@ perineal artery http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png - + - + FMA @@ -73730,8 +73728,8 @@ - - + + @@ -73774,11 +73772,11 @@ cerebrospinal fluid - + - + @@ -73791,13 +73789,13 @@ - + EHDAA2 - + see notes EHDAA2 @@ -73995,7 +73993,7 @@ - + EMAPA:37179 FMA:21246 @@ -74006,14 +74004,14 @@ perineal vein - + - + FMA/obol @@ -74029,7 +74027,7 @@ - + The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]. BTO:0003271 @@ -74053,14 +74051,14 @@ great saphenous vein http://upload.wikimedia.org/wikipedia/commons/5/51/Great_saphenous_vein.png - + - + FMA/obol @@ -74263,7 +74261,7 @@ - + @@ -74292,7 +74290,7 @@ https://github.com/obophenotype/uberon/issues/2344 http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif - + @@ -74305,7 +74303,7 @@ - + FMA @@ -74334,10 +74332,10 @@ - - - - + + + + An adductor muscle that attaches to the femur and the pelvis. In humans, the obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,generalized]. Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus.[AAO] the definition generalized to accommodate the AAO class - 'Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus.' [AAO:0010043] @@ -74364,19 +74362,19 @@ obturator externus http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG - + - + - + - + @@ -74395,26 +74393,26 @@ - + FMA - + FMA - + obturator foramen and obturatory membrane dbpedia - + trochanteric fossa of femur dbpedia @@ -74501,10 +74499,10 @@ - - - - + + + + The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]. AAO has iliacus major and minor, both of which attach to ilium and femur - consider grouping these somehow @@ -74526,19 +74524,19 @@ iliacus muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + - + - + @@ -74551,26 +74549,26 @@ - + dbpedia - + dbpedia - + lesser trochanter of femur dbpedia - + dbpedia @@ -74617,13 +74615,13 @@ - - - - - - - + + + + + + + The largest and most superficial of the three gluteal muscles [WP,unvetted]. In humans, it makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa. @@ -74647,77 +74645,77 @@ gluteus maximus http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG - + - + - + - + - + - + - + - + FMA - + Gluteal surface of ilium lumbar fascia sacrum sacrotuberous ligament dbpedia - + Gluteal surface of ilium lumbar fascia sacrum sacrotuberous ligament dbpedia - + Gluteal tuberosity of the femur iliotibial tract dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -74758,10 +74756,10 @@ - - - - + + + + One of three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]. A&P heads in rat, single head in humans[DOI:10.1002/ar.22919] EMAPA:19163 @@ -74780,45 +74778,45 @@ gluteus medius http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG - + - + - + - + - + FMA - + FMA - + Gluteal surface of ilium under gluteus maximus dbpedia - + Greater trochanter of the femur dbpedia @@ -74854,8 +74852,8 @@ - - + + The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. [WP,unvetted]. BTO:0001878 @@ -74876,11 +74874,11 @@ psoas minor muscle http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray430.png - + - + @@ -74893,14 +74891,14 @@ - + Lateral surface bodies of T12 and L1 vertebrae and intervening intervertebral disc dbpedia - + pectineal line dbpedia @@ -74936,7 +74934,7 @@ - + @@ -74949,7 +74947,7 @@ - + The Sartorius muscle - the longest muscle in the human body - is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle. We do NOT group this AAO class here at this stage until further evidence of shared attachments @@ -74979,25 +74977,25 @@ sartorius muscle http://upload.wikimedia.org/wikipedia/commons/a/af/Sartorius.png - + - + - + femoral nerve dbpedia - + anteromedial surface of the upper tibia in the pes anserinus dbpedia @@ -75055,11 +75053,11 @@ - - - - - + + + + + The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]. BTO:0003418 @@ -75082,23 +75080,23 @@ biceps femoris http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG - + - + - + - + - + @@ -75111,34 +75109,34 @@ - + long head: tibial nerveshort head: common peroneal nerve dbpedia - + dbpedia - + the head of the fibula which articulates with the back of the lateral tibial condyle dbpedia - + the head of the fibula which articulates with the back of the lateral tibial condyle dbpedia - + dbpedia @@ -75173,8 +75171,8 @@ - - + + The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]. A&P heads in rat, single head in humans[DOI:10.1002/ar.22919] @@ -75196,11 +75194,11 @@ semitendinosus https://upload.wikimedia.org/wikipedia/commons/3/3f/Semitendinosus_muscle.PNG - + - + @@ -75213,13 +75211,13 @@ - + dbpedia - + dbpedia @@ -75331,9 +75329,9 @@ - - - + + + One of the muscles belong to the group consisting of the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). The quadriceps is a collective term for the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Kardong_KV, Vertebrates:_Comparative_Anatomy, p.391][VHOG] BTO:0001149 @@ -75364,35 +75362,35 @@ quadriceps femoris http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + - + - + dbpedia - + combined rectus femoris and vastus muscles dbpedia - + tibial tuberosity dbpedia @@ -75456,10 +75454,10 @@ - - - - + + + + The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]. BTO:0001564 EMAPA:36266 @@ -75476,45 +75474,45 @@ rectus femoris https://upload.wikimedia.org/wikipedia/commons/1/14/Rectus_femoris.png - + - + - + - + - + ISBN:0073040584 - + dbpedia - + anterior inferior iliac spine and the exterior surface of the bony ridge which forms the iliac portion of the acetabulum dbpedia - + dbpedia @@ -75536,7 +75534,7 @@ - + The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutæus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]. lateralis @@ -75559,14 +75557,14 @@ vastus lateralis http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + ISBN:0073040584 @@ -75594,10 +75592,10 @@ - - - - + + + + The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]. medialis @@ -75617,44 +75615,44 @@ vastus medialis https://upload.wikimedia.org/wikipedia/commons/0/05/Illu_lower_extremity_muscles.jpg - + - + - + - + - + ISBN:0073040584 - + dbpedia - + dbpedia - + dbpedia @@ -75739,10 +75737,10 @@ - - - - + + + + An adductor muscle that attaches to the pelvic bone and the femur. In humans, The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,generalized]. Originates on the lateral border of the ilium and the anterior margin of the pubis. It inserts on the ventral surface of the femoral shaft.[AAO] @@ -75765,19 +75763,19 @@ pectineus muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + - + - + @@ -75790,28 +75788,28 @@ - + Femoral nerve sometimes obturator nerve dbpedia - + Femoral nerve sometimes obturator nerve dbpedia - + pectineal line - superior pubic ramus dbpedia - + dbpedia @@ -75871,7 +75869,7 @@ - + A muscle that is part of the region of the hindlimb between the pelvis and ankle. see notes on UBERON:0000978 for possible confusion over the term 'leg'. @@ -75900,14 +75898,14 @@ muscle of leg - + - + prolog @@ -75981,7 +75979,7 @@ - + @@ -76041,14 +76039,14 @@ primary motor cortex http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png - + - + MA Wikipedia @@ -76142,11 +76140,11 @@ - - - - - + + + + + A muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]. BTO:0001382 EFO:0001385 @@ -76172,56 +76170,56 @@ tibialis anterior http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png - + - + - + - + - + - + medial cuneiform and first metatarsal bones of the foot dbpedia - + medial cuneiform and first metatarsal bones of the foot dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -76281,11 +76279,11 @@ - - - - - + + + + + A penniform muscle of the lateral front part of the hindlimb responsible for extension of the digits and dorsiflexion of the ankle. BTO:0000436 @@ -76307,23 +76305,23 @@ extensor digitorum longus http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png - + - + - + - + - + @@ -76336,34 +76334,34 @@ - + dbpedia - + Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane dbpedia - + Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane dbpedia - + Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane dbpedia - + Dorsal surface; middle and distal phalanges of lateral four digits dbpedia @@ -76405,9 +76403,9 @@ - - - + + + A superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]. EMAPA:36253 FMA:22539 @@ -76433,34 +76431,34 @@ fibularis longus http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png - + - + - + - + dbpedia - + dbpedia - + dbpedia @@ -76526,30 +76524,30 @@ - + - + - - - + + + - + The most superficial muscle of the triceps surae group, in the posterior portion of the lower hindleg. The most superficial calf muscle in the posterior part of the leg. [TFD][VHOG] @@ -76582,68 +76580,68 @@ gastrocnemius http://upload.wikimedia.org/wikipedia/commons/8/8e/Gastrocnemius.png - + - + - + - + - + - + - + FMA - + tibial nerve from the sciatic specifically nerve roots dbpedia - + superior to articular surfaces of lateral condyle of femur and medial condyle of femur dbpedia - + tendo calcaneus into mid-posteior calcaneus dbpedia - + tendo calcaneus into mid-posteior calcaneus dbpedia - + dbpedia @@ -76700,17 +76698,17 @@ - - - - + + + + - + A deep muscle of the triceps surae group, in the superficial posterior compartment of the leg. @@ -76736,56 +76734,56 @@ soleus muscle http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + - + - + - + - + FMA - + tibial nerve specifically nerve roots dbpedia - + fibula medial border of tibia dbpedia - + dbpedia - + dbpedia @@ -76873,9 +76871,9 @@ - - - + + + The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]. EMAPA:36240 @@ -76898,35 +76896,35 @@ popliteus muscle http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray439.png - + - + - + - + dbpedia - + posterior-medial tibia under the tibial condyles dbpedia - + middle facet of the lateral surface of the lateral femoral condyle dbpedia @@ -76975,9 +76973,9 @@ - - - + + + A deep muscle of the posterior compartment of the hindlimb that is innervated by the tibial nerve, arises from the fibula and insets in the distal phalanx of pedal digit 1. EMAPA:37588 @@ -76995,36 +76993,36 @@ flexor hallucis longus http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png - + - + - + - + tibial nerve S1 and S2 nerve roots dbpedia - + fibula posterior aspect of middle 1/3 dbpedia - + Plantar surface; base of distal phalanx of hallux dbpedia @@ -77065,8 +77063,8 @@ - - + + @@ -77108,24 +77106,24 @@ auditory cortex http://upload.wikimedia.org/wikipedia/commons/8/81/Brodmann_41_42.png - + - + - + MA - + Wikipedia @@ -77806,7 +77804,7 @@ - + A longissimus muscle that lies medial to the longissimus cervicis, between it and the semispinalis capitis. It arises by tendons from the transverse processes of the upper four or five thoracic vertebrae, and the articular processes of the lower three or four cervical vertebrae, and is inserted into the posterior margin of the mastoid process, beneath the splenius capitis and sternocleidomastoid.[WP,unvetted]. BTO:0001649 EMAPA:37650 @@ -77824,14 +77822,14 @@ longissimus capitis http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png - + - + Wikipedia:Mastoid_process @@ -78069,8 +78067,8 @@ - - + + The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebræ, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]. EMAPA:37696 FMA:22828 @@ -78089,11 +78087,11 @@ semispinalis thoracis http://upload.wikimedia.org/wikipedia/commons/6/65/Semispinalis.png - + - + @@ -78106,14 +78104,14 @@ - + transverse processes of the sixth to the tenth thoracic vertebre dbpedia - + spinous processes of the upper four thoracic and lower two cervical vertebrae dbpedia @@ -78168,8 +78166,8 @@ - - + + The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebræ, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]. EMAPA:37695 FMA:22829 @@ -78185,11 +78183,11 @@ semispinalis cervicis http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png - + - + @@ -78202,14 +78200,14 @@ - + transverse processes of the upper five or six thoracic vertebrae dbpedia - + cervical spinous processes from the axis to the fifth dbpedia @@ -78245,7 +78243,7 @@ - + The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebræ, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]. EMAPA:37694 FMA:22830 @@ -78266,7 +78264,7 @@ semispinalis capitis http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png - + @@ -78279,7 +78277,7 @@ - + Transversal process of lower cervical and higher thoracal columna dbpedia @@ -78411,8 +78409,8 @@ - - + + A superficial vein of the upper limb that drain parts of manus and forearm. It originates on the medial (ulnar) side of the dorsal venous network of the manus, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture. @@ -78433,24 +78431,24 @@ basilic vein http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png - + - + - + FMA/obol - + FMA/obol @@ -78528,8 +78526,8 @@ - - + + A vein that accompanies the brachial artery between the shoulder and the elbow. Vein which collects blood from the forelimb and drains into the subclavian vein.[AAO] @@ -78549,24 +78547,24 @@ brachial vein http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png - + - + - + FMA/obol - + FMA/obol @@ -78609,9 +78607,9 @@ - - - + + + A vein between the biceps and pronator radii teres muscles that unites with the common ulnar vein to form the basilic vein within the forearm. Merged median cubital and basilic veins on basis of wikipedia synonym - needs verificied @@ -78634,34 +78632,34 @@ median basilic vein http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png - + - + - + - + FMA/obol - + FMA/obol - + FMA/obol @@ -79017,8 +79015,8 @@ - - + + A vein formed by the confluence of the thoracodorsal and circumflex scapular veins and accompanying the subscapular artery to drain into the axillary vein. EMAPA:37190 @@ -79030,24 +79028,24 @@ subscapular vein - + - + - + FMA/obol - + FMA/obol @@ -79266,14 +79264,14 @@ - + - + The major preaxial endochondral bone in the anterior zeugopod[Phenoscape]. One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO] @@ -79299,24 +79297,24 @@ Due to the presence of the radius in Tetrpodomorph fish this element is not inherently linked to the presence of digits or flexor musculature. The corresponding bone in the posterior fin/limb is the tibia.[Phenoscape]. In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X] radius bone - + - + - + VSAO - + definitional @@ -79364,14 +79362,14 @@ - + - + The major postaxial endochondral bone in the anterior zeugopod[Phenoscape]. One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO] @@ -79397,24 +79395,24 @@ ulna http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg - + - + - + VSAO - + definitional @@ -80988,7 +80986,7 @@ - + @@ -81031,14 +81029,14 @@ UBERON:0001440 forelimb skeleton - + - + FMA @@ -81137,7 +81135,7 @@ - + @@ -81177,14 +81175,14 @@ TOOD - find a home for: FMA:24140 hindlimb skeleton - + - + FMA @@ -81281,7 +81279,7 @@ - + @@ -81314,14 +81312,14 @@ here 'manus' includes both the wrist region, metatarsal region and acropodial region skeleton of manus - + - + EHDAA2 @@ -81397,7 +81395,7 @@ - + Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]. FMA:24216 present in FMA1, but gone in subsequent versions @@ -81435,7 +81433,7 @@ chest http://upload.wikimedia.org/wikipedia/commons/d/db/Chest.jpg - + @@ -81448,7 +81446,7 @@ - + FMA MA @@ -81540,7 +81538,7 @@ - + @@ -81567,14 +81565,14 @@ here 'pes' includes both the ankle region, metatarsals and acropodial region skeleton of pes - + - + EHDAA2 @@ -82241,7 +82239,7 @@ - + @@ -82281,14 +82279,14 @@ navicular bone of pes http://upload.wikimedia.org/wikipedia/commons/8/81/Gray276.png - + - + numbers vary @@ -83451,7 +83449,7 @@ - + The elbow is the region surrounding the elbow-joint-the ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]. cubital Naming conventions for pod terms under discussion within phenoscape group @@ -83481,7 +83479,7 @@ elbow https://upload.wikimedia.org/wikipedia/commons/5/5c/Elbow_coude.JPG - + @@ -83494,7 +83492,7 @@ - + EHDAA2 @@ -83538,7 +83536,7 @@ - + @@ -83594,14 +83592,14 @@ http://upload.wikimedia.org/wikipedia/commons/6/64/Thumb-up.jpg https://upload.wikimedia.org/wikipedia/commons/2/2c/Thumbs_up.jpg - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -83731,7 +83729,7 @@ - + The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]. The pelvic girdle is never joined by contributions of dermal bone. From its first appearance in placoderms, the pelvic girdle is exclusively endoskeletal. It arose from pterygiophores, perhaps several times, in support of the fin.[well established][VHOG] coxal @@ -83764,14 +83762,14 @@ hip http://upload.wikimedia.org/wikipedia/commons/9/9f/Hip.jpg - + - + FMA-modified @@ -83882,7 +83880,7 @@ - + @@ -83923,14 +83921,14 @@ pedal digit http://upload.wikimedia.org/wikipedia/commons/5/5e/Toes.jpg - + - + PHENOSCAPE:ni @@ -84022,7 +84020,7 @@ - + @@ -84058,14 +84056,14 @@ shoulder http://upload.wikimedia.org/wikipedia/commons/9/90/Shoulderjoint.PNG - + - + FMA-modified @@ -84122,8 +84120,8 @@ - - + + The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments. FMA has 'intervertebral joint' as a GAT, and has two distinct classes 'intervertebral symphysis' and 'intervertebral syndesmosis', but note that the latter do not connect the centra vertebral joint @@ -84141,11 +84139,11 @@ UBERON:0001468 intervertebral joint - + - + @@ -84158,13 +84156,13 @@ - + FMA - + connects successive pairs of centra @@ -84225,8 +84223,8 @@ - - + + The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]. sternoclavicular EMAPA:19203 @@ -84247,11 +84245,11 @@ sternoclavicular joint http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray325.png - + - + @@ -84264,13 +84262,13 @@ - + clavicular notch of the manubrium sterni - + sternal end of the clavicle and first rib @@ -84326,7 +84324,7 @@ - + @@ -84364,7 +84362,7 @@ glenohumeral joint http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray327.png - + @@ -84377,7 +84375,7 @@ - + FMA MA @@ -84680,7 +84678,7 @@ - + @@ -84731,14 +84729,14 @@ bone element - + - + VSAO-modified @@ -84865,16 +84863,16 @@ - - - - - - - - - - + + + + + + + + + + A muscle of shoulder which attaches to the scapula, clavicle and humerus.[FMA,generalized]. Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus.[AAO] @@ -84906,43 +84904,43 @@ deltoid http://upload.wikimedia.org/wikipedia/commons/9/93/Deltoideus.png - + - + - + - + - + - + - + - + - + - + @@ -84955,65 +84953,65 @@ - + EHDAA2 - + dbpedia - + EHDAA2 - + FMA - + the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula dbpedia - + the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula dbpedia - + the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula dbpedia - + deltoid tuberosity of humerus dbpedia - + EHDAA2 - + dbpedia @@ -85088,9 +85086,9 @@ - - - + + + The infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]. The pectoral muscles - the pectoralis major and pectoralis minor - evolved from a primitive muscle sheet that connected the coracoid to the humerus. In late reptilians and early mammals, this muscle structure was displaced dorsally; while most of its components evolved into the pectoralis major, some fibers eventually attached to the scapula and evolved into the supraspinatus, the infraspinatus, and parts of the subscapularis. @@ -85115,35 +85113,35 @@ infraspinatus muscle http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png - + - + - + - + Wikipedia - + infraspinous fossa of the scapula dbpedia - + middle facet of greater tubercle of the humerus dbpedia @@ -85191,9 +85189,9 @@ - - - + + + Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]. EHDAA2:0002004 @@ -85216,35 +85214,35 @@ teres major muscle http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png - + - + - + - + EHDAA2 - + posterior aspect of the inferior angle of the scapula dbpedia - + medial lip of the intertubercular sulcus of the humerus dbpedia @@ -85481,7 +85479,7 @@ - + @@ -85501,14 +85499,14 @@ muscle of shoulder - + - + prolog @@ -85702,7 +85700,7 @@ - + The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation[WP,unvetted]. EFO:0001957 @@ -85728,14 +85726,14 @@ knee joint http://upload.wikimedia.org/wikipedia/commons/c/ca/Knee.agr.jpg - + - + definitional @@ -85785,8 +85783,8 @@ - - + + A synovial joint that connects the femur to the acetbulum of the innominate bone. BTO:0001502 EMAPA:19136 @@ -85809,11 +85807,11 @@ hip joint - + - + @@ -85826,13 +85824,13 @@ - + FMA - + definitional @@ -86145,7 +86143,7 @@ - + A joint that connects the forelimb zeugopod and stylopod skeletons[Obol]. In human anatomy, the elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis EMAPA:19102 @@ -86169,7 +86167,7 @@ elbow joint - + @@ -86182,7 +86180,7 @@ - + definitional @@ -86402,8 +86400,8 @@ - - + + @@ -86431,24 +86429,24 @@ http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg https://upload.wikimedia.org/wikipedia/commons/d/d4/Brachial_plexus.jpg - + - + - + MA - + MA @@ -86557,7 +86555,7 @@ - + @@ -86595,7 +86593,7 @@ pectoral muscle https://upload.wikimedia.org/wikipedia/commons/6/6c/Pectoralis_major.png - + @@ -86608,7 +86606,7 @@ - + BTO @@ -86675,7 +86673,7 @@ - + @@ -86717,14 +86715,14 @@ ascending aorta http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - + - + EHDAA2 @@ -86777,7 +86775,7 @@ - + Any muscle organ that is part of a pelvic girdle [Automatically generated definition]. Note that in MA, this is a subclass of pelvis muscle; in FMA this is a hindlimb muscle, but recall in FMA hindlimb includes the girdle. UBERON:0003271 @@ -86799,14 +86797,14 @@ muscle of pelvic girdle - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -86880,7 +86878,7 @@ - + Any muscle organ that is part of a pes [Automatically generated definition]. BTO:0000477 EMAPA:36160 @@ -86895,14 +86893,14 @@ UBERON:0001498 muscle of pes - + - + prolog @@ -86946,7 +86944,7 @@ - + A muscle organ that is part of an arm [Automatically generated definition]. See notes on UBERON:0001460 for possible terminological confusion over term 'arm'. MA uses this consistent with uberon (forelimb muscle is subdivided into shoulder, arm and hand) @@ -86967,14 +86965,14 @@ muscle of arm - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -87042,7 +87040,7 @@ - + Any muscle organ that is part of a manus [Automatically generated definition]. EMAPA:32644 @@ -87059,14 +87057,14 @@ muscle of manus - + - + prolog @@ -87253,8 +87251,8 @@ - - + + The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]. EMAPA:37519 FMA:37418 @@ -87273,24 +87271,24 @@ Action: abducts medial digits dorsal interosseous of manus - + - + - + dbpedia - + dbpedia @@ -87395,9 +87393,9 @@ - - - + + + The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]. EMAPA:36182 @@ -87419,15 +87417,15 @@ coracobrachialis muscle http://upload.wikimedia.org/wikipedia/commons/8/8c/Coracobrachialis.png - + - + - + @@ -87440,20 +87438,20 @@ - + dbpedia - + coracoid process of scapula dbpedia - + medial humerus dbpedia @@ -87501,9 +87499,9 @@ - - - + + + The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]. A muscle of the stylopodium, covering the distal half of the humerus and the anterior part of the elbow joint. It functions to flex the zeugopodium. [TFD][VHOG] @@ -87528,35 +87526,35 @@ brachialis muscle http://upload.wikimedia.org/wikipedia/commons/8/87/Brachialis.png - + - + - + - + dbpedia - + anterior surface of the humerus particularly the distal half of this bone dbpedia - + coronoid process and the tuberosity of the ulna dbpedia @@ -87614,11 +87612,11 @@ - - - - - + + + + + A muscle in the forelimb stylopod which in humans has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]. biceps BTO:0003419 @@ -87644,58 +87642,58 @@ biceps brachii https://upload.wikimedia.org/wikipedia/commons/5/5d/Biceps_brachii_muscle06.png - + - + - + - + - + - + Musculocutaneous nerve dbpedia - + short head: coracoid process of the scapula. long head: supraglenoid tubercle dbpedia - + short head: coracoid process of the scapula. long head: supraglenoid tubercle dbpedia - + radial tuberosity and bicipittal aponeurosis into deep fascia on medial part of forearm dbpedia - + dbpedia @@ -87766,7 +87764,7 @@ - + @@ -87812,14 +87810,14 @@ arch of aorta http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - + - + left arch 4 in human embryology.ch @@ -87877,13 +87875,13 @@ - - - - - - - + + + + + + + The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]. EHDAA2:0002080 @@ -87910,79 +87908,79 @@ triceps brachii https://upload.wikimedia.org/wikipedia/commons/8/83/Triceps_brachii.png - + - + - + - + - + - + - + - + OG - + radial nerve and axillary nerve dbpedia - + radial nerve and axillary nerve dbpedia - + lateral head: posterior humerus dbpedia - + long head: infraglenoid tubercle of scapula dbpedia - + olecranon process of ulna dbpedia - + dbpedia @@ -88299,7 +88297,7 @@ - + @@ -88312,7 +88310,7 @@ - + @@ -88346,11 +88344,11 @@ descending aorta http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - + - + @@ -88363,13 +88361,13 @@ - + FMA - + Wikipedia @@ -88502,7 +88500,7 @@ - + @@ -88551,14 +88549,14 @@ abdominal aorta http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png - + - + FMA @@ -88857,11 +88855,11 @@ - - - - - + + + + + The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]. EMAPA:36207 FMA:38450 @@ -88878,57 +88876,57 @@ pronator teres http://upload.wikimedia.org/wikipedia/commons/8/87/Pronator-teres.png - + - + - + - + - + - + dbpedia - + humeral head: medial epicondyle of humerus ulnar head: coronoid process of ulna dbpedia - + humeral head: medial epicondyle of humerus ulnar head: coronoid process of ulna dbpedia - + Middle of the lateral surface of the body of the radius dbpedia - + dbpedia @@ -88975,7 +88973,7 @@ - + A muscle of the forearm that acts to flex and abduct the manus. [WP,unvetted]. Muscle which originates on the inner border of the humerus and inserts on the carpus.[AAO] @@ -88996,14 +88994,14 @@ flexor carpi radialis muscle http://upload.wikimedia.org/wikipedia/commons/5/59/Flexor-carpi-radialis.png - + - + 2 and 3 in human @@ -89052,8 +89050,8 @@ - - + + The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the manus. [WP,unvetted]. AAO has a class with the same name, the exact insertion point is unclear; consider grouping :Muscle which originates from the medial condyle of the humerus and inserts on the carpus. [AAO:0010734] @@ -89073,25 +89071,25 @@ flexor carpi ulnaris muscle http://upload.wikimedia.org/wikipedia/commons/c/c1/FCU.png - + - + - + medial epicondyle dbpedia - + dbpedia @@ -89132,10 +89130,10 @@ - - - - + + + + A muscle in the forearm that flexes the manual digits[WP,modified]. in EMAPA, this is part of the leg, which is presumably a mistake @@ -89155,19 +89153,19 @@ flexor digitorum profundus http://upload.wikimedia.org/wikipedia/commons/2/24/Flexor-digitorum-profundis.png - + - + - + - + @@ -89180,27 +89178,27 @@ - + FMA - + upper 3/4 of the volar and medial surfaces of the body of the ulna interosseous membrane and deep fascia of the forearm dbpedia - + base of the distal phalanges of the fingers dbpedia - + dbpedia @@ -89241,9 +89239,9 @@ - - - + + + Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]. EMAPA:36189 @@ -89262,35 +89260,35 @@ extensor carpi radialis longus muscle http://upload.wikimedia.org/wikipedia/commons/7/75/ECR-longus.png - + - + - + - + dbpedia - + lateral supracondylar ridge dbpedia - + base dbpedia @@ -89326,9 +89324,9 @@ - - - + + + The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]. EMAPA:36188 @@ -89346,35 +89344,35 @@ extensor carpi radialis brevis muscle - + - + - + - + deep part dbpedia - + dbpedia - + base dbpedia @@ -89410,7 +89408,7 @@ - + @@ -89440,7 +89438,7 @@ http://upload.wikimedia.org/wikipedia/commons/2/25/Extensor_carpi_ulnaris_muscle.png http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray418.png - + @@ -89453,7 +89451,7 @@ - + deep part dbpedia @@ -89491,14 +89489,14 @@ - + - + The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]. EMAPA:36210 FMA:38515 @@ -89515,24 +89513,24 @@ abductor pollicis longus http://upload.wikimedia.org/wikipedia/commons/6/66/Gray1231.png - + - + - + dbpedia - + dbpedia @@ -89733,7 +89731,7 @@ - + @@ -89771,7 +89769,7 @@ common carotid artery plus branches http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - + @@ -89784,7 +89782,7 @@ - + Wikipedia @@ -89925,9 +89923,9 @@ - - - + + + A terminal branch of the left or right common carotid artery which supplies oxygenated blood to the brain and eyes[MP]. Each of two arteries starting at the bifurcation of the common carotid arteries through which blood circulates to many structures and organs in the head. [TFD][VHOG] @@ -89966,15 +89964,15 @@ internal carotid artery http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png - + - + - + @@ -89987,19 +89985,19 @@ - + Wikipedia - + cjm - + FMA @@ -90083,8 +90081,8 @@ - - + + One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta. Developmental relationships should be added (intersegmental artery and right dorsal aorta in EHDAA2, occipitovertebral artery in XAO) @@ -90122,24 +90120,24 @@ subclavian artery http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - + - + - + EHDAA2 - + EHDAA2 @@ -90670,7 +90668,7 @@ - + The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]. EMAPA:37101 @@ -90690,14 +90688,14 @@ medial plantar artery http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png - + - + FMA @@ -90876,7 +90874,7 @@ - + The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]. EMAPA:37181 @@ -90897,14 +90895,14 @@ popliteal vein http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png - + - + FMA/obol @@ -90939,8 +90937,8 @@ - - + + A vein of the lower limb that carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]. @@ -90960,11 +90958,11 @@ anterior tibial vein https://upload.wikimedia.org/wikipedia/commons/4/4e/Gray440_color.png - + - + @@ -90977,13 +90975,13 @@ - + FMA/obol - + FMA/obol @@ -91024,8 +91022,8 @@ - - + + A vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]. EMAPA:37183 @@ -91044,11 +91042,11 @@ posterior tibial vein http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray583.png - + - + @@ -91061,13 +91059,13 @@ - + FMA/obol - + FMA/obol @@ -91102,7 +91100,7 @@ - + The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]. BTO:0003272 @@ -91124,14 +91122,14 @@ small saphenous vein http://upload.wikimedia.org/wikipedia/commons/6/62/Gray582.png - + - + FMA @@ -91166,7 +91164,7 @@ - + A continuation of the Dorsal venous arch of the foot and is the origin of the short saphenous vein. @@ -91182,14 +91180,14 @@ lateral marginal vein - + - + FMA/obol @@ -91288,7 +91286,7 @@ - + A continuation of the Dorsal venous arch of the foot and is the origin of the long saphenous vein. EMAPA:37170 @@ -91303,14 +91301,14 @@ medial marginal vein - + - + FMA/obol @@ -91352,7 +91350,7 @@ - + The term 'sural veins' is not sufficient to appropriately designate the complex venous system of the calf. This should be designated as soleal veins (venae solealis), the veins of the soleus muscle and gastrocnemius veins (venae gastrocnemii) EMAPA:37231 FMA:44561 @@ -91362,14 +91360,14 @@ UBERON:0001551 vein of hindlimb zeugopod - + - + FMA @@ -91397,7 +91395,7 @@ - + @@ -91418,16 +91416,16 @@ kidney arcuate artery - http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png + https://upload.wikimedia.org/wikipedia/commons/8/87/2610_The_Kidney.jpg - + - + MA @@ -91608,7 +91606,7 @@ - + A tube extending from the mouth to the anus. @@ -91648,14 +91646,14 @@ digestive tract - + - + NCBIBook:NBK10107 @@ -91951,8 +91949,8 @@ - - + + A group of muscles (or in some classifications, muscle bellies) that are located under the jaw and attach to the base of the cranium and typically attaches to the hyoid apparatus via a common tendon. this class refers to the mereological sum of digastric muscles in an organism (typically two). The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. Wikipedia:Digastric_muscle]. @@ -91976,11 +91974,11 @@ digastric muscle group http://upload.wikimedia.org/wikipedia/commons/2/26/Digastricus.png - + - + @@ -91993,14 +91991,14 @@ - + anterior belly - mandibular division of the trigeminal via the mylohyoid nerve; posterior belly - facial nerve dbpedia - + Orangutan DOI:10.1007/BF02547558 Intermediate tendon dbpedia @@ -92079,8 +92077,8 @@ - - + + A muscle that arises by four tendinous slips from the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae and inserts into the inferior surface of the basilar part of the occipital bone.[WP,modified]. flexion of neck at atlanto-occipital joint AAO:0010666 @@ -92102,11 +92100,11 @@ longus capitis muscle https://upload.wikimedia.org/wikipedia/commons/7/7d/Longus_capitis.png - + - + @@ -92119,14 +92117,14 @@ - + anterior tubercles of the transverse processes of the third fourth fifth and sixth cervical vertebrae dbpedia - + basilar part of the occipital bone dbpedia @@ -92180,9 +92178,9 @@ - - - + + + The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking right and left mylohyoid and the mandible. The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking R and L mylohyoid and the mandible.[FEED] @@ -92207,15 +92205,15 @@ mylohyoid muscle https://upload.wikimedia.org/wikipedia/commons/9/92/Mylohyoid_muscle.PNG - + - + - + @@ -92228,20 +92226,20 @@ - + mylohyoid nerve from inferior alveolar branch of mandibular nerve V3 dbpedia - + Wikipedia - + body of hyoid bone and median raphe dbpedia @@ -92304,10 +92302,10 @@ - - - - + + + + The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by the first cervical nerve (C1). The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by C1.[FEED] @@ -92333,19 +92331,19 @@ geniohyoid muscle https://upload.wikimedia.org/wikipedia/commons/2/2c/Geniohyoid_muscle.PNG - + - + - + - + @@ -92358,27 +92356,27 @@ - + C1 via the hypoglossal nerve dbpedia - + C1 via the hypoglossal nerve dbpedia - + dbpedia - + dbpedia @@ -92452,9 +92450,9 @@ - - - + + + Intrinsic muscle of the larynx, innervated by the external division of the laryngeal nerve, a branch of the vagus nerve. It attaches to the anterolateral surface of the cricoid cartilage and the external surface of the thyroid cartilage. EMAPA:19270 @@ -92476,36 +92474,36 @@ cricothyroid muscle http://upload.wikimedia.org/wikipedia/commons/f/f4/Musculuscricothyreoideus.png - + - + - + - + external laryngeal branch of the vagus dbpedia - + Anterior and lateral cricoid cartilage dbpedia - + Inferior cornu and lamina of the thyroid cartilage dbpedia @@ -92555,7 +92553,7 @@ - + A fleshy subdivision of one side of the face bounded by an eye, ear and the nose. Surface structure that includes the scales, skin, and muscles that are located ventral and posterior to the eye.[TAO] buccal @@ -92581,14 +92579,14 @@ cheek https://upload.wikimedia.org/wikipedia/commons/a/a9/Chica_cachetona.jpg - + - + FMA-abduced-lr @@ -92656,7 +92654,7 @@ - + @@ -92692,14 +92690,14 @@ muscle of larynx - + - + prolog @@ -92760,10 +92758,10 @@ - - - - + + + + The inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]. This is a pharyngeal arch 4/6 muscle that is integral to the pharyngeal tube, participates in oral/pharyngeal behaviors, is innervated by the pharyngeal plexus of the vagus n. and attaches to the laryngeal cartilages and the midline raphe.[FEED] EMAPA:18965 @@ -92789,46 +92787,46 @@ inferior pharyngeal constrictor http://upload.wikimedia.org/wikipedia/commons/2/22/Musculusconstrictorpharyngisinferior.png - + - + - + - + - + Wikipedia - + cricoid and thyroid cartilage dbpedia - + cricoid and thyroid cartilage dbpedia - + Wikipedia @@ -92921,15 +92919,15 @@ - - + + - + Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue. Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue. [TFD][VHOG] @@ -92959,15 +92957,15 @@ genioglossus muscle http://upload.wikimedia.org/wikipedia/commons/7/7e/Genioglossus.png - + - + - + @@ -92980,19 +92978,19 @@ - + dbpedia - + EHDAA2 - + Wikipedia @@ -93085,7 +93083,7 @@ - + @@ -93115,7 +93113,7 @@ hyoglossus muscle http://upload.wikimedia.org/wikipedia/commons/7/7e/Hyoglossus.png - + @@ -93128,7 +93126,7 @@ - + lingual process in horse dbpedia @@ -93182,9 +93180,9 @@ - - - + + + The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]. Styloglossus is a muscle that attaches to the tongue and stylohyal and is innervated by Cranial Nerve XII.[FEED] EMAPA:18279 @@ -93201,15 +93199,15 @@ styloglossus http://upload.wikimedia.org/wikipedia/commons/1/16/Styloglossus.png - + - + - + @@ -93222,19 +93220,19 @@ - + dbpedia - + dbpedia - + tip and sides of tongue dbpedia @@ -93272,9 +93270,9 @@ - - - + + + The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguæ. [WP,unvetted]. Palatoglossus is a muscle that attaches to the soft palate and the tongue and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] @@ -93297,35 +93295,35 @@ http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray1028.png - + - + - + - + Wikipedia - + aponeurosis dbpedia - + dbpedia @@ -93381,7 +93379,7 @@ - + @@ -93407,7 +93405,7 @@ extrinsic muscle of tongue - + @@ -93420,7 +93418,7 @@ - + check palatoglossus Wikipedia @@ -93479,8 +93477,8 @@ - - + + The intrinsic tongue muscles are an integral part of the tongue and completely contained within the tongue that are innervated by Cranial Nerve XII. The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED] @@ -93500,11 +93498,11 @@ intrinsic muscle of tongue - + - + @@ -93517,14 +93515,14 @@ - + FEED Wikipedia - + EHDAA2 @@ -93575,7 +93573,7 @@ - + A muscle innervated by a facial nerve. FMA:46751 @@ -93610,16 +93608,10 @@ facial muscle http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png - + - - - - UMLS:C0015460 - ncithesaurus:Facial_Muscle - @@ -93703,7 +93695,7 @@ - + FEED Wikipedia @@ -93713,6 +93705,12 @@ A muscle innervated by a facial nerve. FEED:rd + + + + UMLS:C0015460 + ncithesaurus:Facial_Muscle + @@ -93720,11 +93718,11 @@ - - - - - + + + + + @@ -93753,23 +93751,23 @@ orbicularis oculi muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png - + - + - + - + - + @@ -93782,32 +93780,32 @@ - + FMA - + branches of the facial nerve and Zygomatic branches of Facial Nerve dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -93862,8 +93860,8 @@ - - + + Nerve that carries information from the olfactory epithelium to the olfactory bulb[Butler and Hodos]. Nerve that carries information from the olfactory epithelium through the olfactory bulb to the olfactory cortex of the telencephalon.[AAO] @@ -93918,24 +93916,24 @@ olfactory nerve http://upload.wikimedia.org/wikipedia/commons/b/be/Gray771.png - + - + - + ISBN:0471888893 - + ISBN:0471888893 @@ -94062,9 +94060,9 @@ - - - + + + The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]. EMAPA:37503 FMA:46805 @@ -94080,15 +94078,15 @@ levator labii superioris http://upload.wikimedia.org/wikipedia/commons/8/8f/Levator_labii_superioris.png - + - + - + @@ -94101,21 +94099,21 @@ - + zygomatic branch dbpedia - + Skin and muscle of the upper lip dbpedia - + Skin and muscle of the upper lip dbpedia @@ -94151,11 +94149,11 @@ - - - - - + + + + + A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip, orbicularis oris muscle, and mandible, and superficial and lateral to the mentalis muscle. See Diogo et al., 2009; Burrows et al., 2011). EMAPA:37516 FMA:46816 @@ -94170,23 +94168,23 @@ depressor labii inferioris http://upload.wikimedia.org/wikipedia/commons/9/96/Depressor_labii_inferioris.png - + - + - + - + - + @@ -94199,33 +94197,33 @@ - + FMA-abduced-lr - + dbpedia - + oblique line of the mandible between the symphysis and the mental foramen dbpedia - + integument of the lower lip Orbicularis oris fibers its fellow of the opposite side dbpedia - + integument of the lower lip Orbicularis oris fibers its fellow of the opposite side dbpedia @@ -94280,9 +94278,9 @@ - - - + + + The buccinator is a muscle that is attached to the mandible, skin, pterygomandibular raphe and maxilla, and is innervated by Cranial Nerve VII and participates in oropharyngeal behavior. logical definition provided by FEED @@ -94306,36 +94304,36 @@ buccinator muscle http://upload.wikimedia.org/wikipedia/commons/d/df/Buccinator.jpg - + - + - + - + buccal branch FEED - + from the alveolar processes of the maxillary bone and mandible temporomandibular joint dbpedia - + dbpedia says: in the fibers of the orbicularis oris FEED @@ -95134,7 +95132,7 @@ - + An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]. check development relationships in different species @@ -95157,14 +95155,14 @@ azygos vein https://upload.wikimedia.org/wikipedia/commons/b/b4/Azygos_vein.png - + - + ISBN:0443065837 @@ -95194,7 +95192,7 @@ - + @@ -95225,14 +95223,14 @@ auricular muscle http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png - + - + MA @@ -95358,7 +95356,7 @@ - + @@ -95371,9 +95369,9 @@ - - - + + + Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by masseteric nerve branches of the trigeminal nerve (CN V), and attaches to mandible and zygomatic arch. The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG] @@ -95406,19 +95404,19 @@ https://github.com/obophenotype/uberon/issues/540 http://upload.wikimedia.org/wikipedia/commons/7/78/Illu_head_neck_muscle.jpg - + - + - + - + @@ -95431,27 +95429,27 @@ - + FMA - + zygomatic arch and maxilla dbpedia - + zygomatic arch and maxilla dbpedia - + FEED @@ -95511,15 +95509,15 @@ - + - - + + Pharyngeal arch 1 muscle that is innervated by the deep temporal branches of the trigeminal nerve and attaches to the wall of the braincase (including the cranial vault) and mandible. Pharyngeal arch 1 muscle that is innervated by the deep temporal nerves and attaches to the wall of the braincase and mandible.[FEED] @@ -95550,35 +95548,35 @@ temporalis muscle http://upload.wikimedia.org/wikipedia/commons/d/d3/Gray382.png - + - + - + - + dbpedia - + coronoid process of the mandible. dbpedia - + dbpedia @@ -95661,14 +95659,14 @@ - + - + The muscle that stabilizes the stapes bone. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]. The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] @@ -95693,24 +95691,24 @@ stapedius muscle http://upload.wikimedia.org/wikipedia/commons/6/65/Musculusstapedius.png - + - + - + ISBN:0073040584 - + neck of stapes dbpedia @@ -95766,22 +95764,22 @@ - + - + - - + + The larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]. The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG] @@ -95811,45 +95809,45 @@ tensor tympani http://upload.wikimedia.org/wikipedia/commons/8/82/Gray912.png - + - + - + - + - + FMA - + medial pterygoid nerve from the mandibular nerve dbpedia - + dbpedia - + handle of the malleus dbpedia @@ -95907,10 +95905,10 @@ - - - - + + + + Skeletal muscle derived from cranial mesoderm and controls eye movements. todo - resolve discrepancies in which muscles are considered extra-ocular @@ -95954,44 +95952,44 @@ extra-ocular muscle http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg - + - + - + - + - + MA - + EHDAA2 - + HPO:pr - + EHDAA2 @@ -96092,7 +96090,7 @@ - + The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]. @@ -96125,7 +96123,7 @@ medial rectus extraocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + @@ -96138,7 +96136,7 @@ - + inferior division of the oculomotor nerve dbpedia @@ -96209,7 +96207,7 @@ - + The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]. @@ -96244,7 +96242,7 @@ lateral rectus extra-ocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + @@ -96257,7 +96255,7 @@ - + dbpedia @@ -96337,7 +96335,7 @@ - + @@ -96365,7 +96363,7 @@ levator palpebrae superioris http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + @@ -96378,7 +96376,7 @@ - + FMA @@ -96401,7 +96399,7 @@ - + @@ -96430,7 +96428,7 @@ ciliary muscle http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png - + @@ -96449,7 +96447,7 @@ - + FMA @@ -96566,10 +96564,10 @@ - - - - + + + + A sphincter muscle that is part of the iris. In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted] WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure @@ -96604,19 +96602,19 @@ sphincter pupillae http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png - + - + - + - + @@ -96629,27 +96627,27 @@ - + ISBN:0781772214 - + encircles iris dbpedia - + encircles iris dbpedia - + dbpedia @@ -96756,10 +96754,10 @@ - - - - + + + + A smooth muscle of the eye, running radially in the iris that functions as a dilator. [WP,unvetted]. It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on alpha1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina @@ -96796,19 +96794,19 @@ dilatator pupillae http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png - + - + - + - + @@ -96821,27 +96819,27 @@ - + ISBN:0781772214 - + outer margins of iris dbpedia - + inner margins of iris dbpedia - + dbpedia @@ -97051,8 +97049,8 @@ - - + + The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]. Part of the external carotid which supplies blood to the tongue.[AAO] @@ -97074,24 +97072,24 @@ lingual artery https://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG - + - + - + FMA-abduced-lr - + AA FMA @@ -97148,7 +97146,7 @@ - + A branch of the lingual artery that supplies the sublingual gland. Check grouping with amphibian structure of the same name @@ -97171,14 +97169,14 @@ sublingual artery http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png - + - + FMA @@ -97355,7 +97353,7 @@ - + A major artery of the head that arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]. BTO:0003747 @@ -97372,14 +97370,14 @@ superficial temporal artery http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray1200.png - + - + FMA @@ -97778,8 +97776,8 @@ - - + + The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]. EMAPA:37113 @@ -97803,25 +97801,25 @@ central retinal artery https://upload.wikimedia.org/wikipedia/commons/5/59/Gray514_updated.png - + - + - + proximal portion ISBN:0781772214 - + FMA @@ -97935,7 +97933,7 @@ - + The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]. EMAPA:37094 @@ -97953,14 +97951,14 @@ lacrimal artery http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png - + - + FMA @@ -98058,7 +98056,7 @@ - + One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis. @@ -98081,14 +98079,14 @@ anterior cerebral artery https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + FMA WP @@ -98252,7 +98250,7 @@ - + The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]. BTO:0005206 @@ -98276,14 +98274,14 @@ middle cerebral artery https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + FMA WP @@ -98327,8 +98325,8 @@ - - + + One of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery. @@ -98359,24 +98357,24 @@ posterior communicating artery http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + - + FMA-abduced-lr - + FMA ZFA @@ -98621,8 +98619,8 @@ - - + + A major lymphatic vessel that drains lymph from the lower body, left appendage, and left thorax into the junction of the left jugular and subclavian veins. placement of the ZFA class here is dubious @@ -98651,24 +98649,24 @@ thoracic duct http://upload.wikimedia.org/wikipedia/commons/7/75/Gray599.png - + - + - + TAO - + EHDAA2 @@ -98768,7 +98766,7 @@ - + @@ -98805,14 +98803,14 @@ basilar artery http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + EHDAA2 @@ -98868,7 +98866,7 @@ - + The major artery of the midbrain, which crosses the midbrain medially to meet its partner the mesencephalic vein. review this term, check taxon scope @@ -98885,14 +98883,14 @@ mesencephalic artery - + - + ZFA @@ -99019,7 +99017,7 @@ - + The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]. EHDAA2:0000659 @@ -99040,14 +99038,14 @@ posterior cerebral artery https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + FMA-abduced-lr @@ -99403,11 +99401,11 @@ - - - - - + + + + + The first major branch of the abdominal aorta. EHDAA2:0004519 @@ -99439,23 +99437,23 @@ celiac artery http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png - + - + - + - + - + @@ -99468,32 +99466,32 @@ - + dorsal aorta in primitive verts Wikipedia - + ISBN:0073040584 - + ISBN:0073040584 - + ISBN:0073040584 - + ISBN:0073040584 @@ -99661,7 +99659,7 @@ - + The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]. EMAPA:18636 @@ -99680,14 +99678,14 @@ superior sagittal sinus https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif - + - + cjm @@ -99734,7 +99732,7 @@ - + Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles. Somatic efferent fibers which innervate four eye muscles.[AAO] @@ -99784,14 +99782,14 @@ oculomotor nerve http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png - + - + Wikipedia @@ -100088,7 +100086,7 @@ - + Cranial nerve that has three branches - the ophthalmic (supplying the skin of the nose and upper jaw), the maxillary and the mandibular (supplying the lower jaw). Nerve consists of motor and sensory components. Ganglion cells of the sensory component form the proximal part of the trigeminal (Gasserian) ganglion. From the ganglion 3 major rami innervate jaws, snout, and buccal roof.[AAO] @@ -100144,14 +100142,14 @@ trigeminal nerve https://upload.wikimedia.org/wikipedia/commons/9/99/Gray778_Trigeminal.png - + - + Wikipedia @@ -100267,8 +100265,8 @@ - - + + Cranial nerve that runs to the eye muscles. Somatic motor nerve which bifurcates innervating m. rectus lateralis and m. retractor bulbi (eye muscles).[AAO] @@ -100320,25 +100318,25 @@ abducens nerve https://upload.wikimedia.org/wikipedia/commons/2/29/Abducens_nerve1.png - + - + - + found in all vertebrates except lampreys and hagfishes Wikipedia - + Wikipedia @@ -100449,10 +100447,10 @@ - - - - + + + + Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches). Slender nerve composed of branchiomotor and visceral efferent fibers innervating the mouth and various muscles within the jaw. Sensory components innervate the bucccal roof and somatomotor components innervate the depressor musculature and muscle interhyoideus.[AAO] @@ -100508,44 +100506,44 @@ facial nerve http://upload.wikimedia.org/wikipedia/commons/1/1f/Cranial_nerve_VII.svg - + - + - + - + - + ZFA - + Wikipedia - + Wikipedia - + Wikipedia @@ -100679,7 +100677,7 @@ - + Cranial nerve that transmits sound and equilibrium (balance) information from the inner ear to the brain. Nerve primarily composed of special somatic afferent fibers innervating the inner ear, and is involved in balance, position, and hearing.[AAO] @@ -100738,14 +100736,14 @@ vestibulocochlear nerve http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png - + - + ISBN:0471888893 @@ -100860,8 +100858,8 @@ - - + + @@ -100917,25 +100915,25 @@ glossopharyngeal nerve http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png - + - + - + sensory Wikipedia - + motor Wikipedia @@ -101389,7 +101387,7 @@ - + The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]. Vein which collects blood from muscles of the head and drains into the external jugular vein.[AAO] @@ -101413,14 +101411,14 @@ facial vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -101495,7 +101493,7 @@ - + The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]. EMAPA:37195 @@ -101513,14 +101511,14 @@ supraorbital vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -101560,7 +101558,7 @@ - + A vein in the chin that is connected to the sublingual and anterior jugular veins and drains into the facial vein. EMAPA:37188 @@ -101574,14 +101572,14 @@ submental vein - + - + FMA/obol @@ -101609,7 +101607,7 @@ - + The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]. @@ -101630,14 +101628,14 @@ retromandibular vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -101685,7 +101683,7 @@ - + The superficial temporal vein is a vein of the side of the head. [WP,unvetted]. BTO:0003748 @@ -101704,14 +101702,14 @@ superficial temporal vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA Wikipedia @@ -101747,7 +101745,7 @@ - + A temporal vein that arises near the lateral angle of the eye; joins the superficial temporal veins to form the retromandibular vein. EMAPA:37176 @@ -101759,14 +101757,14 @@ middle temporal vein - + - + FMA TFD @@ -101841,7 +101839,7 @@ - + A vein that consists of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]. in horses, a branch of the external jugular gives off the occipital and caudal auricular vein @@ -101859,14 +101857,14 @@ maxillary vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -101948,7 +101946,7 @@ - + The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]. EMAPA:37132 @@ -101965,14 +101963,14 @@ anterior auricular vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -102133,9 +102131,9 @@ - - - + + + The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5-S2. [WP,unvetted]. A set of muscles in FMA, a single organ in MA EMAPA:36267 @@ -102155,34 +102153,34 @@ triceps surae http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + - + - + dbpedia - + dbpedia - + dbpedia @@ -102305,12 +102303,12 @@ - - - - - - + + + + + + The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]. BTO:0000867 EMAPA:36255 @@ -102331,64 +102329,64 @@ tibialis posterior http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png - + - + - + - + - + - + - + dbpedia - + dbpedia - + dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -102699,9 +102697,9 @@ - - - + + + The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]. EFO:0004271 @@ -102723,35 +102721,35 @@ central retinal vein - + - + - + - + proximal portion ISBN:0781772214 - + FMA/obol - + FMA/obol @@ -102855,7 +102853,7 @@ - + The cranial ganglion that is associated with and extends fibers into the trigeminal nerve. consider renaming this 'trigeminal ganglion complex'. The complex may be fused (amniotes) partially fused (xenopus) or separate (sharks) A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995.[TAO] @@ -102907,7 +102905,7 @@ trigeminal ganglion http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png - + @@ -102920,7 +102918,7 @@ - + Bgee:AN @@ -103043,12 +103041,12 @@ - - - - - - + + + + + + @@ -103079,27 +103077,27 @@ occipital bone http://upload.wikimedia.org/wikipedia/commons/2/27/Gray194.png - + - + - + - + - + - + @@ -103112,38 +103110,38 @@ - + FMA - + FMA - + basi paired exo and supra occipital bones MA-modified - + interparietal (postparietal) - + WP - + PMID:11523816 @@ -103202,11 +103200,11 @@ - - - - - + + + + + An unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended. part of viscerocranium (facial skeleton) in FMA @@ -103235,23 +103233,23 @@ sphenoid bone http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg - + - + - + - + - + @@ -103264,31 +103262,31 @@ - + FMA - + orbito pre and basi sphenoid - + pterygoid process - + alisphenoid - + cjm @@ -103343,9 +103341,9 @@ - - - + + + The large, irregular bone located at the base and side of the skull; consists of three parts at birth: squamous, tympanic, and petrous. In many mammals, as in humans, the petrosal, ectotympanic and squamosal bones synostose to form the temporal bone + styloid process @@ -103372,15 +103370,15 @@ temporal bone http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg - + - + - + @@ -103393,20 +103391,20 @@ - + petrosal - + squamosal plus angular temporal series - + styloid process @@ -103472,7 +103470,7 @@ - + @@ -103508,7 +103506,7 @@ ethmoid bone http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg - + @@ -103521,7 +103519,7 @@ - + definitional @@ -103590,13 +103588,19 @@ - + + + + + + + @@ -103634,7 +103638,7 @@ lacrimal bone http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png - + @@ -103655,7 +103659,7 @@ - + orbital series ISBN:0073040584 @@ -104100,8 +104104,14 @@ - - + + + + + + + + @@ -104147,11 +104157,11 @@ - + - + @@ -104171,13 +104181,13 @@ - + FMA-abduced-lr - + ISBN:0073040584 @@ -104398,8 +104408,8 @@ - - + + A horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. [WP,modified]. Paired processes that extend posterolaterally from the posterior margin of the hyoid plate. These processes are the ossified posteromedial processes and invest the laryngeal apparatus.[AAO] @@ -104429,11 +104439,11 @@ hyoid bone http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png - + - + @@ -104446,13 +104456,13 @@ - + Wikipedia - + Wikipedia @@ -104539,9 +104549,9 @@ - - - + + + One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]. This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5. The small bones of the middle ear: incus, malleus, and stapes. [TFD][VHOG] @@ -104578,34 +104588,34 @@ auditory ossicle bone http://upload.wikimedia.org/wikipedia/commons/b/b0/Illu_auditory_ossicles.jpg - + - + - + - + MA - + PMID:11523816 - + PMID:11237469 https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -104702,9 +104712,9 @@ - - - + + + The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]. @@ -104742,35 +104752,35 @@ stapes bone http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray918.png - + - + - + - + Wikipedia - + DOI:10.1111/j.1469-7580.2006.00524.x classical definition - + definitional @@ -104899,7 +104909,7 @@ - + The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]. According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG] @@ -104924,14 +104934,14 @@ incus bone http://upload.wikimedia.org/wikipedia/commons/d/df/Gray917.png - + - + EMAPA-implied @@ -104985,9 +104995,9 @@ - - - + + + The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]. According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG] @@ -105012,35 +105022,35 @@ malleus bone http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png - + - + - + - + Wikipedia - + true Wikipedia - + cjm @@ -105109,7 +105119,7 @@ - + Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals. The organ of hearing and of equilibrium. [TFD][VHOG] @@ -105149,14 +105159,14 @@ ear http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -105368,8 +105378,8 @@ - - + + @@ -105407,24 +105417,24 @@ basioccipital bone http://upload.wikimedia.org/wikipedia/commons/c/c4/Parsbasilaris%28young%29.PNG - + - + - + FMA - + TAO @@ -105522,8 +105532,8 @@ - - + + @@ -105561,11 +105571,11 @@ exoccipital bone http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray131.png - + - + @@ -105578,13 +105588,13 @@ - + TAO - + ZFA @@ -105700,7 +105710,7 @@ - + The petrous portion of the temporal bone or pyramid is pyramidal and is wedged in at the base of the skull between the sphenoid and occipital bones. Directed medially, forward, and a little upward, it presents for examination a base, an apex, three surfaces, and three angles, and contains, in its interior, the essential parts of the organ of hearing. The petrous portion is among the most basal elements of the skull and forms part of the endocranium.[WP,unvetted]. The petrosal bone arises from the two otic bones on the lateral wall of the chondrocranium and encases the inner ear of mammals. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Grande_L, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.258, see_Liem_KF][VHOG] derivative of prootic and opisthotic @@ -105728,14 +105738,14 @@ petrous part of temporal bone http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png - + - + FMA @@ -105796,9 +105806,9 @@ - - - + + + @@ -105840,15 +105850,15 @@ http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray144.png - + - + - + @@ -105861,20 +105871,20 @@ - + see comments - + temporal series ISBN:0073040584 - + EHDAA2 PMID:11523816 @@ -105980,7 +105990,7 @@ - + @@ -106013,14 +106023,14 @@ orbit of skull - + - + FMA-abduced-lr @@ -106166,7 +106176,7 @@ - + The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]. BAMS:iVIIn BAMS:imn @@ -106192,14 +106202,14 @@ sensory root of facial nerve http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png - + - + Wikipedia @@ -106253,10 +106263,10 @@ - - - - + + + + The group of sensory neuron cell bodies associated with the facial nerve (seventh cranial nerve). resolve facial VII vs geniculate (see EHDAA2) These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG] @@ -106298,19 +106308,19 @@ geniculate ganglion http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png - + - + - + - + @@ -106323,27 +106333,27 @@ - + check for multi-species ZFA - + EHDAA2:0004623 ZFA - + EHDAA2:0004623 - + EHDAA2:0000491 @@ -106449,8 +106459,8 @@ - - + + The group of neuron cell bodies associated with the ninth cranial nerve. These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG] EHDAA2:0000710 @@ -106473,11 +106483,11 @@ glossopharyngeal ganglion - + - + @@ -106490,7 +106500,7 @@ - + dorsal EHDAA2 ISBN:0471888893 @@ -106499,7 +106509,7 @@ - + ventrolateral EHDAA2 ISBN:0471888893 @@ -106751,8 +106761,8 @@ - - + + @@ -106790,24 +106800,24 @@ The nails of humans and the claws are moth are highly similar. Both species have a proximal nail fold, cuticle, nail matrix, nail bed, nail plate, and hyponychium. Distinguishing features are the shape of the nail and the presence of an extended hyponychium in the mouse [PMC3579226] nail - + - + - + FMA - + Wikipathways:WP2062 @@ -106849,9 +106859,9 @@ - - - + + + @@ -106890,34 +106900,34 @@ nasal septum http://upload.wikimedia.org/wikipedia/commons/6/65/Gray854.png - + - + - + - + AAO - + AAO - + EHDAA2-abduced @@ -107001,7 +107011,7 @@ - + @@ -107051,14 +107061,14 @@ nasal cavity http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg - + - + cjm @@ -107185,7 +107195,7 @@ - + @@ -107210,7 +107220,7 @@ - + Subdivision of skeleton which includes upper and lower jaw skeletons. TODO - move ZFA:0001227 (it is the entire jaw skeleton). Skeletal and cartilage elements of the first pharyngeal arch.[TAO] @@ -107246,24 +107256,24 @@ jaw skeleton - + - + - + cjm - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -107463,7 +107473,7 @@ - + Subdivision of head that consists of the lower jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]. Inferior mandibular arch located on the anterior and lateral sides of the skull.[AAO] @@ -107492,14 +107502,14 @@ lower jaw region http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png - + - + Wikipedia:Mandibular_prominence @@ -107546,7 +107556,7 @@ - + @@ -107598,14 +107608,14 @@ eyelid https://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg - + - + multiple @@ -107862,7 +107872,7 @@ - + Nuclear complex containing subnuclei that give rise to the axons of the occulomotor nerve, both motor and parasympathetic fibers, situated at the midline at the level of the superior colliculus in the midbrain tegmentum (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533-534). @@ -107921,7 +107931,7 @@ oculomotor nuclear complex http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png - + @@ -107934,7 +107944,7 @@ - + ZFA @@ -108093,15 +108103,15 @@ - - + + - + @@ -108147,34 +108157,34 @@ http://upload.wikimedia.org/wikipedia/commons/3/31/Pig_snout_sagittal_cut.jpg http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg - + - + - + - + FMA - + EMAPA - + fusion http://www.indiana.edu/~anat550/hnanim/face/face.html @@ -108240,7 +108250,7 @@ - + Nucleus extending from the upper spinal cord through the pontine tegmentum that receives sensory inputs from the trigeminal nerve. It is continuous caudally with the dorsal gray matter of the spinal cord. BAMS:SPV @@ -108275,7 +108285,7 @@ spinal nucleus of trigeminal nerve http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png - + @@ -108288,7 +108298,7 @@ - + MA @@ -108335,9 +108345,9 @@ - - - + + + Elongated nucleus located in the midbrain tegmentum that receives proprioceptive input from both teh extraocular and the masticatory muscles. Contrary to the general rule, the cell bodies that give rise to these sensory fibers are located within the mesencephalic nucleus rather than in a peripheral ganglion. Some of the sensory fibers in the mesencephalic root give off collaterals to the trigeminal motor nucleus, thereby providing the anatomic basis for the monosynaptic jaw reflex. (Heimer, L. The Human Brain and Spinal Cord, 2nd ed. 1996, page 248). develops from NC in some species[https://github.com/obophenotype/uberon/wiki/The-neural-crest] Not of NC origin[DOI:10.1002/dvdy.1197]. part of midbrain tegmentum in NIF and MA. the neurons of the mesencephalic trigeminal nucleus are the only centrally located primary sensory neurons in amniotes; all others are extramedullary @@ -108383,34 +108393,34 @@ mesencephalic nucleus of trigeminal nerve http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png - + - + - + - + NIF - + ISBN:978-0-387-09845-6 - + Wikipedia @@ -108529,8 +108539,8 @@ - - + + A region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]. @@ -108569,11 +108579,11 @@ nucleus ambiguus http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png - + - + @@ -108586,13 +108596,13 @@ - + MA - + definitional @@ -108993,8 +109003,8 @@ - - + + @@ -109007,16 +109017,16 @@ - - - + + + - + A muscular organ in the floor of the mouth. in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence. A mobile mass of muscular tissue that is covered with mucous membrane, occupies much of the cavity of the mouth, forms part of its floor, bears the organ of taste, and assists in chewing and swallowing. [TFD][VHOG] @@ -109060,27 +109070,27 @@ tongue http://upload.wikimedia.org/wikipedia/commons/a/a6/Tongue.agr.jpg - + - + - + - + - + - + @@ -109093,7 +109103,7 @@ - + BTO EHDAA2 FMA @@ -109102,31 +109112,31 @@ - + MA - + anterior 2/3 - + Wikipedia - + Wikipedia - + definitional @@ -109205,7 +109215,7 @@ - + One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]. FMA:54683 GAID:359 @@ -109224,14 +109234,14 @@ sphenoidal sinus http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray856.png - + - + FMA-abduced-lr @@ -109306,7 +109316,7 @@ - + BIRNLEX:4102 EMAPA:32777 FMA:54819 @@ -109322,14 +109332,14 @@ papilla of tongue - + - + FMA-modified @@ -109352,10 +109362,10 @@ - - - - + + + + @@ -109406,19 +109416,19 @@ taste bud http://upload.wikimedia.org/wikipedia/commons/5/5a/Gray1018.png - + - + - + - + @@ -109431,25 +109441,25 @@ - + ZFA - + NIF - + FMA - + http://dev.biologists.org/content/128/22/4573.full @@ -109657,7 +109667,7 @@ - + @@ -109696,14 +109706,14 @@ oropharynx https://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg - + - + ISBN:0073040584-table13.1 @@ -109781,14 +109791,14 @@ - + - + An anatomical space that is enclosed by a pharynx. See notes for pharynx - as a grouping class this is probably too bad. We exclude WBbt:0005790 (pharyngeal lumen) because of the developmental relationship TOODO check @@ -109807,24 +109817,24 @@ UBERON:0001731 cavity of pharynx - + - + - + XAO - + XAO @@ -109936,8 +109946,8 @@ - - + + The muscular, non-bony arch-shaped posterior portion of the palate extending from the posterior edge of the hard palate. A muscular arch-shaped structure that is composed of the musculus uvuli and parts of tensor veli palatini, levator veli palatini, palatoglossus and palatopharyngeus and attaches to the hard palate and modulates the connections between the oral cavity and pharynx soft tissue arch .[FEED] @@ -109965,11 +109975,11 @@ soft palate https://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg - + - + @@ -109982,13 +109992,13 @@ - + FMA - + MA @@ -110059,7 +110069,7 @@ - + @@ -110092,14 +110102,14 @@ palatine uvula https://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg - + - + PMID:1408233 @@ -110214,8 +110224,8 @@ - - + + @@ -110259,24 +110269,24 @@ submandibular gland http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg - + - + - + FMA-abduced-lr - + https://orcid.org/0000-0003-3308-6245 @@ -110358,7 +110368,7 @@ - + @@ -110398,14 +110408,14 @@ larynx http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg - + - + EHDAA2 @@ -110455,8 +110465,8 @@ - - + + The largest of the laryngeal cartilages. The largest cartilage of the larynx, having two broad processes that join anteriorly to form the Adam's apple. [TFD][VHOG] [In anura] a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) [In mammals] Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG] @@ -110484,24 +110494,24 @@ thyroid cartilage http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg - + - + - + EHDAA2 - + EHDAA2 @@ -110581,7 +110591,7 @@ - + @@ -110616,7 +110626,7 @@ laryngeal cartilage - + @@ -110629,7 +110639,7 @@ - + https://github.com/obophenotype/uberon/wiki/The-axial-skeleton @@ -110685,7 +110695,7 @@ - + The paired triangular laryngeal cartilages located postlaterally at the level of the thyroid cartilage. Paired, anteroposteriorly elongated cartilages that are associated with the vocal cords. These cartilages are medially separated and hemispherical, and their concave side faces ventromedially.[AAO] AAO:0000674 @@ -110711,14 +110721,14 @@ arytenoid cartilage http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray950.png - + - + cjm @@ -110776,7 +110786,7 @@ - + @@ -110806,7 +110816,7 @@ corniculate cartilage http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png - + @@ -110819,7 +110829,7 @@ - + FMA @@ -110993,7 +111003,7 @@ - + Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]. BTO:0000753 @@ -111015,7 +111025,7 @@ lymphoid tissue - + @@ -111028,7 +111038,7 @@ - + NCBIBook:NBK27108 @@ -111183,8 +111193,8 @@ - - + + A parenchyma that is part of a thyroid follicle [Automatically generated definition]. BTO:0004579 EMAPA:37769 @@ -111203,24 +111213,24 @@ UBERON:0001747 parenchyma of thyroid gland - + - + - + FMA - + FMA @@ -111294,7 +111304,7 @@ - + @@ -111313,14 +111323,14 @@ capsule of parathyroid gland - + - + MA @@ -111358,8 +111368,8 @@ - - + + A parenchyma that is part of a parathyroid gland [Automatically generated definition]. EMAPA:35664 FMA:55569 @@ -111371,24 +111381,24 @@ UBERON:0001749 parenchyma of parathyroid gland - + - + - + FMA - + FMA @@ -111416,16 +111426,16 @@ - - - + + + - + @@ -111455,45 +111465,45 @@ lacrimal apparatus http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png - + - + - + - + - + FMA MA - + MA - + HPO:pr - + ISBN:0781772214 @@ -111564,7 +111574,7 @@ - + Collagen-rich odontogenic tissue characteristic of teeth and tooth-like skeletal elements (e.g., odontodes); mature dentine is mineralized and develops from predentine tissue; often (but not always) tubular and acellular. Mineralized collagen containing substance that forms the tooth structure.[TAO] Dentine is a bona fide vertebrate novelty, and dentine-secreting odontoblasts represent a cell type that is exclusively derived from the neural crest.[well established][VHOG] @@ -111596,7 +111606,7 @@ . dentine - + @@ -111609,7 +111619,7 @@ - + VSAO @@ -111678,8 +111688,8 @@ - - + + A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]. current classification under substance of tooth may be turned into taxon GCI (e.g. sharks have enamel in dermal denticles) @@ -111710,11 +111720,11 @@ enamel http://upload.wikimedia.org/wikipedia/commons/6/66/Enamelorgan11-17-05.jpg - + - + @@ -111727,13 +111737,13 @@ - + VSAO - + 85 Wikipedia:ENAM @@ -111790,7 +111800,7 @@ - + Odontoid tissue that is deposited by cementoblasts onto dentine tissue and functions to attach teeth, odontodes and other odontogenic derivatives to bone tissue and the integument. Odontoid tissue that is deposited by cementoblasts onto dentine tissue and functions to attach teeth, odontodes and other odontogenic derivatives to bone tissue and the integument.[VSAO] Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA:55630]. @@ -111818,7 +111828,7 @@ cementum https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg - + @@ -111831,7 +111841,7 @@ - + PMID:19767574 Wikipedia @@ -111896,7 +111906,7 @@ - + The part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]. Material in the center of the dentine of the mature tooth. In secondary teeth the pulp contains blood vessels and odontoblast.[TAO] The oral cavity of vertebrates is generally thought to arise as an ectodermal invagination. Consistent with this, oral teeth are proposed to arise exclusively from ectoderm, contributing to tooth enamel epithelium, and from neural crest derived mesenchyme, contributing to dentin and pulp (reference 1); Teeth and tooth-like structures, together named odontodes, are repeated organs thought to share a common evolutionary origin. These structures can be found in gnathostomes at different locations along the body: oral teeth in the jaws, teeth and denticles in the oral-pharyngeal cavity, and dermal denticles on elasmobranch skin (reference 2).[uncertain][VHOG] @@ -111925,7 +111935,7 @@ dental pulp https://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg - + @@ -111938,7 +111948,7 @@ - + ZFA @@ -112247,8 +112257,8 @@ - - + + @@ -112274,11 +112284,11 @@ periodontium https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg - + - + @@ -112291,13 +112301,13 @@ - + cjm - + FMA @@ -112367,8 +112377,8 @@ - - + + @@ -112427,25 +112437,25 @@ vagus nerve http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png - + - + - + sensory Wikipedia - + motor Wikipedia @@ -112625,7 +112635,7 @@ - + A thickened and indented region in the midline in the floor of the rostral part of the pharyngeal region of the foregut, located between the second and third branchial arches that is the first indication of the thyroid primordium. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.132]. foramen caecum foramen cecum @@ -112641,7 +112651,7 @@ future foramen cecum - + @@ -112654,7 +112664,7 @@ - + EHDAA2 @@ -112799,7 +112809,7 @@ - + A condensation of odontoblasts that forms the part of a tooth germ that gives rise to dentin and pulp in the mature tooth. It lies below a cellular aggregation known as the enamel organ. Cell condensation that is a well-defined population of densely organized mesenchymal cells that aggregates adjacent to an epithelium.[VSAO] Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina.[TAO] @@ -112831,14 +112841,14 @@ odontogenic papilla http://upload.wikimedia.org/wikipedia/commons/2/22/Gray1011.png - + - + ZFA @@ -113453,7 +113463,7 @@ - + @@ -113496,14 +113506,14 @@ iris - + - + XAO @@ -113558,7 +113568,7 @@ - + @@ -113586,14 +113596,14 @@ lacrimal canaliculus - + - + FMA @@ -113728,7 +113738,7 @@ - + @@ -113780,14 +113790,14 @@ corneal epithelium http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png - + - + ISBN:0781772214 @@ -113883,16 +113893,16 @@ - - + + - - + + @@ -113934,44 +113944,44 @@ sclera http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + - + - + - + - + FMA - + ZFA - + ISBN:0781772214 - + cjm ISBN:0781772214 Wikipedia @@ -114022,7 +114032,7 @@ - + A skeletal muscle organ that is part of the trunk region. Note that this class excludes smooth muscle elements in the trunk region, such as the internal anal sphincter. This appears to be consistent with other ontologies such as FMA and ZFA which appear to only include skeletal muscles here. In fact the MA class 'trunk muscle' is classified as a 'set of skeletal muscles'. Many ontologies do not appear to have a coherent distinction between an individual muscle and the musculature (i.e. the set of muscles in a region), so we group all together here. @@ -114047,14 +114057,14 @@ skeletal muscle of trunk - + - + prolog @@ -114124,7 +114134,7 @@ - + @@ -114163,14 +114173,14 @@ ciliary body http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + - + ISBN:0781772214 @@ -114218,14 +114228,14 @@ - + - + @@ -114288,24 +114298,24 @@ optic choroid http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + - + - + MA - + Wikipedia @@ -114398,7 +114408,7 @@ - + @@ -114447,14 +114457,14 @@ substantia propria of cornea http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png - + - + cjm ISBN:0781772214 Wikipedia @@ -114530,9 +114540,9 @@ - - - + + + A double layer covering the ciliary body that produces aqueous humor. BTO:0001770 @@ -114552,15 +114562,15 @@ ciliary epithelium - + - + - + @@ -114573,19 +114583,19 @@ - + MA - + MP - + Wikipedia @@ -114898,7 +114908,7 @@ - + @@ -114953,14 +114963,14 @@ pigmented layer of retina http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png - + - + Wikipedia @@ -115463,7 +115473,7 @@ - + @@ -115497,14 +115507,14 @@ photoreceptor layer of retina http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png - + - + ZFA @@ -115683,7 +115693,7 @@ - + @@ -115730,14 +115740,14 @@ outer nuclear layer of retina - + - + soma ZFA @@ -116076,7 +116086,7 @@ - + @@ -116135,7 +116145,7 @@ ganglionic layer of retina http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png - + @@ -116148,7 +116158,7 @@ - + FMA @@ -116224,7 +116234,7 @@ - + @@ -116280,14 +116290,14 @@ nerve fiber layer of retina - + - + FMA @@ -116657,7 +116667,7 @@ - + @@ -116699,14 +116709,14 @@ aqueous humor of eyeball http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + - + FMA def states A and P located_in in EHDAA2 VHOG @@ -116887,7 +116897,7 @@ - + @@ -116911,7 +116921,7 @@ vitreous body http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + @@ -116924,7 +116934,7 @@ - + neural ectoderm of optic cup ISBN:0781772214 @@ -117102,8 +117112,8 @@ - - + + @@ -117136,24 +117146,24 @@ anterior segment of eyeball http://upload.wikimedia.org/wikipedia/commons/b/ba/Cataract_in_human_eye.png - + - + - + FMA - + cjm @@ -117204,8 +117214,8 @@ - - + + @@ -117235,24 +117245,24 @@ posterior segment of eyeball http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + - + - + FMA - + cjm @@ -117424,8 +117434,8 @@ - - + + The elastic, clear, membrane-like structure, that is outer most layer of the lens. The transparent membrane which surrounds the lens of the eye. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] (...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod. (...) A watery aqueous humor fills the spaces in the eye in front of the lens (...) (reference 2).[well established][VHOG] @@ -117451,24 +117461,24 @@ capsule of lens http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png - + - + - + Wikipedia - + EHDAA2 @@ -117623,7 +117633,7 @@ - + @@ -117662,14 +117672,14 @@ sympathetic ganglion http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png - + - + DOI:10.1101/gr.157586.113 ISBN:0073040584 @@ -117840,7 +117850,7 @@ - + @@ -117873,14 +117883,14 @@ parasympathetic ganglion http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png - + - + ISBN:0073040584 @@ -117977,8 +117987,8 @@ - - + + Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]. Made to be a subtype of junction rather than tissue to be consistent with FMA @@ -118000,24 +118010,24 @@ nerve plexus - + - + - + AEO - + AEO @@ -118053,9 +118063,9 @@ - - - + + + @@ -118105,15 +118115,15 @@ conjunctiva http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png - + - + - + @@ -118126,19 +118136,19 @@ - + cjm - + MA - + ISBN:0781772214 @@ -118189,7 +118199,7 @@ - + @@ -118218,7 +118228,7 @@ lines the eyeballs palpebral conjunctiva - + @@ -118231,7 +118241,7 @@ - + FMA MA @@ -118864,15 +118874,15 @@ - - + + - + Any of the coil glands of the skin that secrete sweat. TODO - check if all sweat glands are epidermal - see EMAPA:29743 A gland that secretes sweat, found in the dermis or subcutaneous tissue, opening by a duct on the body surface. [TFD][VHOG] @@ -118902,15 +118912,15 @@ sweat gland http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg - + - + - + @@ -118923,20 +118933,20 @@ - + FMA - + coiled tubular Wikipedia:Tubular_gland - + definitional @@ -118997,7 +119007,7 @@ - + @@ -119010,8 +119020,8 @@ - - + + @@ -119048,15 +119058,15 @@ sebaceous gland http://upload.wikimedia.org/wikipedia/commons/4/49/HairFollicle.png - + - + - + @@ -119069,20 +119079,20 @@ - + BTO FMA - + VHOG - + definitional @@ -119592,14 +119602,14 @@ - + - + @@ -119642,24 +119652,24 @@ gingiva https://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg - + - + - + Carranza - + ISBN:0013002015 @@ -119790,7 +119800,7 @@ - + @@ -119828,14 +119838,14 @@ parotid gland http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg - + - + FMA-abduced-lr @@ -119997,8 +120007,8 @@ - - + + @@ -120036,11 +120046,11 @@ http://upload.wikimedia.org/wikipedia/commons/9/90/Lips.JPG http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg - + - + @@ -120053,7 +120063,7 @@ - + BTO FMA-implicit VHOG @@ -120062,7 +120072,7 @@ - + cjm @@ -120470,8 +120480,8 @@ - - + + @@ -120503,25 +120513,25 @@ bony labyrinth http://upload.wikimedia.org/wikipedia/commons/2/22/Gray920.png - + - + - + FMA MA - + FMA @@ -120550,8 +120560,8 @@ - - + + @@ -120593,11 +120603,11 @@ semicircular canal http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png - + - + @@ -120610,13 +120620,13 @@ - + MA - + OG @@ -120896,7 +120906,7 @@ - + @@ -120949,14 +120959,14 @@ http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg - + - + FMA VHOG XAO @@ -121054,7 +121064,7 @@ - + Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA]. EMAPA:36549 FMA:60908 @@ -121075,14 +121085,14 @@ perilymph - + - + Wikipedia @@ -121124,7 +121134,7 @@ - + Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation. The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO] The labyrinth, or inner ear, evolved very early in vertebrate history and, with many variations in configuration but none of basic design and function, has been retained by all vertebrates.[well established][VHOG] @@ -121167,14 +121177,14 @@ internal ear http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png - + - + definitional @@ -121355,7 +121365,7 @@ - + @@ -121395,14 +121405,14 @@ membranous labyrinth http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png - + - + FMA MA @@ -121459,8 +121469,8 @@ - - + + @@ -121495,11 +121505,11 @@ lacrimal drainage system - + - + @@ -121512,13 +121522,13 @@ - + FMA - + ISBN:9780674021839 @@ -121858,7 +121868,7 @@ - + An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]. TODO - check cochlear duct vs cochlear aqueduct vs scala media The coiled portion of the membranous labyrinth located inside the cochlea. It contains endolymph. [TFD][VHOG] @@ -121896,14 +121906,14 @@ cochlear duct of membranous labyrinth http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png - + - + FMA MA @@ -122003,8 +122013,8 @@ - - + + Any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium. TODO - check canal vs duct. see Wikipedia:File:Gray927.png In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus (...); Gnathostome ears have a horizontal semicircular duct. This brings their complement to three semicircular ducts, a pattern retained throughout gnathostome evolution.[well established][VHOG] @@ -122022,24 +122032,24 @@ UBERON:0001856 semicircular duct - + - + - + MA - + FMA MA @@ -122317,9 +122327,9 @@ - - - + + + The canalis reuniens of Hansen is part of the human inner ear. It connects the lower part of the saccule to the ductus cochlearis near its vestibular extremity. EMAPA:17287 FMA:61252 @@ -122335,34 +122345,34 @@ UBERON:0001861 ductus reuniens - + - + - + - + EMAPA - + Wikipedia - + Wikipedia @@ -122469,7 +122479,7 @@ - + @@ -122497,7 +122507,7 @@ http://upload.wikimedia.org/wikipedia/commons/0/0c/Cochlea-crosssection.png http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png - + @@ -122510,7 +122520,7 @@ - + FMA @@ -122527,7 +122537,7 @@ - + @@ -122555,7 +122565,7 @@ scala tympani http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png - + @@ -122568,7 +122578,7 @@ - + FMA @@ -122874,7 +122884,7 @@ - + One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter.[FMA]. Part of the telencephalon consisting of either of the two smooth, elongated halves of the cerebrum.[AAO] The presence of paired evaginated hemispheres and olfactory bulbs in both agnathan and gnathostome radiations suggests that such hemispheres were also present in the common ancestor.[well established][VHOG] @@ -122912,14 +122922,14 @@ cerebral hemisphere http://upload.wikimedia.org/wikipedia/commons/9/92/Hemispheres.png - + - + FMA-abduced-lr @@ -123274,10 +123284,10 @@ - - - - + + + + @@ -123323,26 +123333,26 @@ caudate nucleus http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg - + - + - + - + - + true EHDAA2 ncithesaurus @@ -123350,21 +123360,21 @@ - + true NIFSTD - + true NIFSTD - + MA @@ -123419,7 +123429,7 @@ - + @@ -123473,7 +123483,7 @@ putamen http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg - + @@ -123486,7 +123496,7 @@ - + FMA @@ -123536,10 +123546,10 @@ - - - - + + + + @@ -123584,44 +123594,44 @@ globus pallidus https://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif - + - + - + - + - + NIFSTD - + MA - + BTO-weakened - + GO ISBN:1588900649 @@ -123696,14 +123706,14 @@ - + - + Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA:61841] One part of the striatum is called the archistriatum. (...) The archistriatum of fishes consists of several indistinctly segregated nuclei called the amygdaloid (...) complex. Tetrapods retain the structure, and in mammals the corresponding amygdala is a globular mass that tends to be ventral to the other basal nuclei.[well established][VHOG] @@ -123757,11 +123767,11 @@ amygdala http://upload.wikimedia.org/wikipedia/commons/8/8b/Amyg.png - + - + @@ -123774,13 +123784,13 @@ - + FMA - + BTO @@ -123994,7 +124004,7 @@ - + BAMS:SF @@ -124018,14 +124028,14 @@ UBERON:0001878 septofimbrial nucleus - + - + NIFSTD @@ -124078,8 +124088,8 @@ - - + + A brain structure that is part of the septal nuclear complex. It is connected with the hippocampus, hypothalamus and amygdala. BAMS:DB BAMS:NDB @@ -124108,24 +124118,24 @@ UBERON:0001879 nucleus of diagonal band - + - + - + FMA - + MA @@ -124186,8 +124196,8 @@ - - + + @@ -124235,25 +124245,25 @@ bed nucleus of stria terminalis - + - + - + EMAPA FMA - + NIFSTD @@ -124468,14 +124478,14 @@ - + - + @@ -124523,25 +124533,25 @@ nucleus accumbens http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg - + - + - + FMA GO - + MA @@ -124619,8 +124629,8 @@ - - + + @@ -124658,11 +124668,11 @@ olfactory tubercle http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png - + - + @@ -124675,7 +124685,7 @@ - + EHDAA2-inferred MA VHOG @@ -124684,7 +124694,7 @@ - + BTO @@ -124829,7 +124839,7 @@ - + Part of the hippocampal formation forming a 'V' or 'U' shaped structure with the opening bounded by hippocampal area CA3. It consists of 3 layers from superficial to deep: molecular, granule cell and polymorphic or hilar layer. @@ -124871,14 +124881,14 @@ dentate gyrus of hippocampal formation http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg - + - + MA @@ -125342,7 +125352,7 @@ - + The most anterior region of the brain including both the telencephalon and diencephalon. @@ -125389,14 +125399,14 @@ forebrain http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg - + - + definitional @@ -125476,14 +125486,14 @@ - + - + The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]. developmental relationships need revised @@ -125536,24 +125546,24 @@ midbrain http://upload.wikimedia.org/wikipedia/commons/f/f9/Human_brain_inferior_view_description.JPG - + - + - + definitional - + Bgee:AN @@ -125761,7 +125771,7 @@ - + Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres. Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures[FMA:62000]. @@ -125821,14 +125831,14 @@ telencephalon - + - + Bgee:AN @@ -125970,14 +125980,14 @@ - + - + The division of the forebrain that develops from the foremost primary cerebral vesicle. @@ -126040,24 +126050,24 @@ diencephalon http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg - + - + - + definitional - + definitional @@ -126193,7 +126203,7 @@ - + Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum[WP,modified]. Anterior part of the hindbrain ventral to the cerebellum[BIRNLEX:965]. @@ -126228,14 +126238,14 @@ metencephalon http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg - + - + definitional @@ -126491,7 +126501,7 @@ - + @@ -126546,14 +126556,14 @@ dorsal plus ventral thalamus http://upload.wikimedia.org/wikipedia/commons/c/ce/Brain_chrischan_thalamus.jpg - + - + FMA-abduced-lr @@ -126666,8 +126676,8 @@ - - + + @@ -126730,18 +126740,18 @@ hypothalamus http://upload.wikimedia.org/wikipedia/commons/9/9f/LocationOfHypothalamus.jpg - + - + - + FMA EHDAA2 Wikipedia @@ -126749,7 +126759,7 @@ - + WP @@ -127262,7 +127272,7 @@ - + An epithelium that is part of a small intestine [Automatically generated definition]. Intestinal epithelium which lines the lumen of the mid intestine.[TAO] BTO:0001258 @@ -127287,14 +127297,14 @@ epithelium of small intestine - + - + FMA @@ -127361,7 +127371,7 @@ - + The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]. @@ -127400,14 +127410,14 @@ thalamic reticular nucleus http://upload.wikimedia.org/wikipedia/commons/a/ab/Constudthal.gif - + - + MA @@ -127651,7 +127661,7 @@ - + @@ -127664,7 +127674,7 @@ - + @@ -127738,11 +127748,11 @@ pineal body http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg - + - + @@ -127755,14 +127765,14 @@ - + ZFA various - + add secretion @@ -127916,8 +127926,8 @@ - - + + @@ -127972,24 +127982,24 @@ subthalamic nucleus http://upload.wikimedia.org/wikipedia/commons/3/33/Basal-ganglia-coronal-sections-large.png - + - + - + NIFSTD - + part of hypothalamus in ABA @@ -128309,8 +128319,8 @@ - - + + A brain commissure that is situated in front of the pineal gland and connects the habenular nucleus on one side of the diencephalon with that on the other side. HBC BAMS:HC @@ -128343,11 +128353,11 @@ habenular commissure http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png - + - + @@ -128360,13 +128370,13 @@ - + FMA - + ZFA-modified @@ -128442,7 +128452,7 @@ - + The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]. a pathway in NCIT @@ -128475,14 +128485,14 @@ medial forebrain bundle - + - + NIFSTD @@ -129290,7 +129300,7 @@ - + @@ -129329,7 +129339,7 @@ paraventricular nucleus of thalamus http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg - + @@ -129342,7 +129352,7 @@ - + FMA @@ -129424,7 +129434,7 @@ - + Re BAMS:RE BAMS:Re @@ -129450,14 +129460,14 @@ UBERON:0001921 reuniens nucleus - + - + NIFSTD @@ -129531,7 +129541,7 @@ - + @@ -129571,14 +129581,14 @@ parafascicular nucleus - + - + FMA @@ -129669,7 +129679,7 @@ - + @@ -129710,14 +129720,14 @@ central medial nucleus - + - + NIFSTD @@ -129807,8 +129817,8 @@ - - + + @@ -129853,24 +129863,24 @@ paracentral nucleus - + - + - + FMA - + NIFSTD @@ -129975,8 +129985,8 @@ - - + + The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]. VL BAMS:VL @@ -130020,24 +130030,24 @@ ventral lateral nucleus of thalamus http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + - + - + ZFA - + FMA @@ -130176,7 +130186,7 @@ - + @@ -130223,7 +130233,7 @@ lateral geniculate body http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png - + @@ -130236,7 +130246,7 @@ - + FMA @@ -130344,8 +130354,8 @@ - - + + @@ -130393,24 +130403,24 @@ medial geniculate body http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + - + - + NIFSTD - + FMA @@ -130642,10 +130652,10 @@ - - - - + + + + @@ -130694,45 +130704,45 @@ http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg - + - + - + - + - + ABA MA - + FMA - + Wikipedia - + Wikipedia @@ -131000,7 +131010,7 @@ - + The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted]. @@ -131035,14 +131045,14 @@ lateral preoptic nucleus http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG - + - + GO @@ -131154,7 +131164,7 @@ - + The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]. @@ -131200,14 +131210,14 @@ arcuate nucleus of hypothalamus http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG - + - + NIFSTD @@ -131315,7 +131325,7 @@ - + @@ -131340,14 +131350,14 @@ UBERON:0001933 retrochiasmatic area - + - + FMA NIFSTD @@ -131440,9 +131450,9 @@ - - - + + + The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]. @@ -131484,15 +131494,15 @@ dorsomedial nucleus of hypothalamus http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG - + - + - + @@ -131505,19 +131515,19 @@ - + MA - + FMA - + Wikipedia @@ -131623,7 +131633,7 @@ - + The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]. @@ -131664,7 +131674,7 @@ ventromedial nucleus of hypothalamus http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG - + @@ -131677,7 +131687,7 @@ - + FMA @@ -131786,8 +131796,8 @@ - - + + The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]. @@ -131824,24 +131834,24 @@ tuberomammillary nucleus - + - + - + MA - + FMA @@ -132667,7 +132677,7 @@ - + Ventral part of the midbrain, separated from the hindbrain by the isthmus[ISBN:0471888893]. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle[FMA] The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct[WP]. Together, our results reveal a shared basic organization in the tegmental domains of the diencephalon and midbrain of developing lamprey, indicating early appearance of the domain in vertebrate phylogeny.[well established][VHOG] @@ -132707,14 +132717,14 @@ midbrain tegmentum http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png - + - + ZFA @@ -132806,7 +132816,7 @@ - + Nuclear complex between dorsal thalamus and optic tectum whose nuclei receive afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input. @@ -132865,7 +132875,7 @@ pretectal region - + @@ -132878,7 +132888,7 @@ - + ISBN:0471888893 @@ -133042,7 +133052,7 @@ - + Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM). @@ -133103,14 +133113,14 @@ superior colliculus http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png - + - + FMA-abduced-lr @@ -133252,7 +133262,7 @@ - + Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM). BAMS:IC @@ -133289,14 +133299,14 @@ inferior colliculus http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png - + - + FMA-abduced-lr @@ -133366,8 +133376,8 @@ - - + + @@ -133422,24 +133432,24 @@ red nucleus http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png - + - + - + FMA - + ISBN:0471888893 @@ -133685,7 +133695,7 @@ - + @@ -133731,14 +133741,14 @@ neocortex http://upload.wikimedia.org/wikipedia/commons/7/77/Neocortex.jpg - + - + Wikipedia @@ -133840,7 +133850,7 @@ - + An epithelium that is part of a nasopharynx [Automatically generated definition]. UBERON:0003237 BTO:0004480 @@ -133869,14 +133879,14 @@ UBERON:0001951 epithelium of nasopharynx - + - + EHDAA2 @@ -133974,7 +133984,7 @@ - + An epithelium that is part of a oropharynx [Automatically generated definition]. Composition varies with species and time. This is classified as nonkeratinizing stratified squamous in FMA, unilaminar in EHDAA2; the majority of the pharyngeal epithelium is unilaminar in zebrafish EHDAA2:0004083 @@ -133990,14 +134000,14 @@ UBERON:0001952 epithelium of oropharynx - + - + EHDAA2 @@ -134043,8 +134053,8 @@ - - + + A modified six-layered cortex between the subiculum and the main part of the parahippocampal gyrus. consider merging with BA27 @@ -134073,24 +134083,24 @@ presubiculum http://upload.wikimedia.org/wikipedia/commons/5/5f/Brodmann_Cytoarchitectonics_27.png - + - + - + NIFSTD - + FMA @@ -134162,11 +134172,11 @@ - - - - - + + + + + A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum. @@ -134220,54 +134230,54 @@ Ammon's horn http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray739-emphasizing-hippocampus.png - + - + - + - + - + - + FMA - + ABA - + FMA - + Wikipedia:Hippocampus - + Wikipedia @@ -134375,7 +134385,7 @@ - + An epithelium that is part of a respiratory bronchiole [Automatically generated definition]. EMAPA:35730 @@ -134395,14 +134405,14 @@ epithelium of respiratory bronchiole - + - + FMA @@ -134476,7 +134486,7 @@ - + The hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]. EMAPA:35192 @@ -134499,14 +134509,14 @@ cartilage of bronchus - + - + MP @@ -134674,7 +134684,7 @@ - + An epithelium that lines a terminal bronchiole. A pseudostratified epithelium, containing basal cells, stem cells of the airway, submucosal glands and cartilage rings, is limited to the trachea and large lobar airways in the mouse (Morrisey and Hogan, 2010). This more complex epithelium extends to terminal bronchioles in the human[DOI:10.1242/dev.115469] @@ -134696,14 +134706,14 @@ terminal bronchiole epithelium - + - + FMA @@ -135061,7 +135071,7 @@ - + A diffuse collection of lymphpoid cells that participate in airway immune responses. FMA:62821 MA:0000135 @@ -135075,14 +135085,14 @@ Lymphoid tissue associated with airways in mice has functional similarities to human BALT[ISBN:0123813611] Notes: FMA classifies this as organized, not diffuse bronchial-associated lymphoid tissue - + - + ISBN:0123813611 @@ -135780,7 +135790,7 @@ - + @@ -135833,14 +135843,14 @@ bile - + - + 0.3% in humans @@ -136061,7 +136071,7 @@ - + A lamina propria that is part of a esophagus [Automatically generated definition]. EMAPA:26987 FMA:63050 @@ -136090,14 +136100,14 @@ UBERON:0001974 lamina propria of esophagus - + - + FMA @@ -136327,7 +136337,7 @@ - + @@ -136368,14 +136378,14 @@ epithelium of esophagus - + - + FMA @@ -136725,8 +136735,8 @@ - - + + @@ -136739,7 +136749,7 @@ - + @@ -136798,34 +136808,34 @@ blood vessel http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg - + - + - + - + AEO - + EHDAA2 - + GO:0072360 @@ -137003,8 +137013,8 @@ - - + + @@ -137042,24 +137052,24 @@ http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg - + - + - + Wikipedia:Tubular_gland - + further investigation required ISBN:9780521617147 @@ -137220,7 +137230,7 @@ - + @@ -137259,14 +137269,14 @@ corneal endothelium http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png - + - + WP @@ -137324,7 +137334,7 @@ - + A layer of epithelium that lines the heart, blood vessels (endothelium, vascular), lymph vessels (endothelium, lymphatic), and the serous cavities of the body[MESH]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[FMA]. endothelial @@ -137346,7 +137356,7 @@ The term 'endothelium' has been either restricted to the continuous cell layer of the vertebrates, as we are assuming here, or applied to all the cells able to adhere to the luminal surface of the vascular basement membrane (Casley-Smith 1980) endothelium - + @@ -137360,7 +137370,7 @@ - + UBERON:0001985 FMA-inferred @@ -137397,10 +137407,10 @@ - - - - + + + + Organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell. Phylogenetic analyses of the concatenated data set using maximum parsimony, maximum likelihood and distance based (neighbour joining) methods all converged on a nearly identical, well supported topology defining four principal eutherian lineages. The results affirm monophyly of traditional placental orders (except Artiodactyla and Insectivora), and also support some previously proposed, as well as new, superordinal clades.[well established][VHOG] @@ -137436,44 +137446,44 @@ http://upload.wikimedia.org/wikipedia/commons/6/66/Placenta.jpg http://upload.wikimedia.org/wikipedia/commons/f/f1/Placenta.svg - + - + - + - + - + https://github.com/obophenotype/uberon/issues/1376 - + ISBN:0073040584 - + Wikipedia - + ISBN:0073040584 @@ -137799,8 +137809,8 @@ - - + + The upper layer of the dermis beneath the epidermis, composed of dense irregular connective tissue[ncit,modified]. todo - check tissue composition Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III. @@ -137832,24 +137842,24 @@ papillary layer of dermis http://upload.wikimedia.org/wikipedia/commons/b/b4/Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG - + - + - + WP - + FMA-text @@ -137961,7 +137971,7 @@ - + @@ -137996,14 +138006,14 @@ reticular layer of dermis - + - + FMA @@ -138065,7 +138075,7 @@ - + Cartilage tissue primarily composed of type II collagen (thin fibrils) and a glassy appearance. Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel with a perichondrium[FMA:64783]. Cartilage tissue primarily composed of type II collagen (thin fibrils) and a glassy appearance.[VSAO] @@ -138088,7 +138098,7 @@ http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray292.png http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg - + @@ -138101,7 +138111,7 @@ - + VSAO-text-def @@ -138245,14 +138255,14 @@ - + - + Cartilage tissue that is flexible and contains abundant elastic fibers. Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which consists of elastic fibers[FMA:64785]. Cartilage tissue that is flexible and contains abundant elastic fibers.[VSAO] @@ -138278,11 +138288,11 @@ elastic cartilage tissue http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray904.png - + - + @@ -138295,13 +138305,13 @@ - + Wikipedia - + VSAO @@ -138388,10 +138398,10 @@ - - - - + + + + @@ -138416,7 +138426,7 @@ - + A sensory epithelium inside the nasal cavity that is responsible for detecting odors[WP]. Sensory lining of the medial wall, roof and anterior aspects of the main olfactory cavity (cavum principale).[AAO] relationship loss: part_of principal cavity (AAO:0000992)[AAO] @@ -138459,23 +138469,23 @@ olfactory epithelium http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png - + - + - + - + - + @@ -138488,31 +138498,31 @@ - + NIFSTD - + NBK26868 - + NBK26868 - + NBK26868 - + NCBIBook:NBK55982 @@ -138692,11 +138702,11 @@ - - - - - + + + + + @@ -138727,55 +138737,55 @@ https://github.com/obophenotype/uberon/issues/478 http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + - + - + - + - + dbpedia - + dbpedia - + dbpedia - + lesser trochanter of femur dbpedia - + dbpedia @@ -138832,7 +138842,7 @@ - + On of the muscles that make up the buttocks: the gluteus maximus muscle, gluteus medius muscle and gluteus minimus muscle. gluteal @@ -138855,14 +138865,14 @@ gluteal muscle - + - + EHDAA2 @@ -138907,7 +138917,7 @@ - + Any joint that connects a rib to another structure (or another rib). Examples: costochondral, costovertebral, interchondral, sternocostal joints. FMA_RETIRED:64994 MA:0001508 @@ -138919,14 +138929,14 @@ UBERON:0002001 joint of rib - + - + cjm @@ -138949,7 +138959,7 @@ - + @@ -138978,7 +138988,7 @@ interchondral joint http://upload.wikimedia.org/wikipedia/commons/c/cc/Gray315.png - + @@ -138997,7 +139007,7 @@ - + connects two adjacent ribs @@ -139145,8 +139155,8 @@ - - + + @@ -139182,11 +139192,11 @@ enteric nervous system - + - + @@ -139199,7 +139209,7 @@ - + FMA MA NIF @@ -139208,7 +139218,7 @@ - + Wikipedia ZFA https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -139464,7 +139474,7 @@ - + @@ -139487,14 +139497,14 @@ pulmonary nerve plexus - + - + FMA @@ -139697,9 +139707,9 @@ - - - + + + An artery that carries deoxygenated blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood.. Major artery which supplies blood to the lungs.[AAO] @@ -139737,35 +139747,35 @@ pulmonary artery https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png - + - + - + - + Wikipedia - + EHDAA2 XAO - + EHDAA2 @@ -140271,14 +140281,14 @@ - + - + Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints). Phylogenetically, synovium is one of the newer attributes of the vertebrate locomotor apparatus. The first synovial joints developed in the piscine jaw of ancestors of modern lungfish by an evolutionary process that modified preexisting fibrous and cartilaginous joints, which were the predominant articulation of the early sea- and land-dwelling vertebrates.[well established][VHOG] @@ -140317,11 +140327,11 @@ http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png http://upload.wikimedia.org/wikipedia/commons/5/5d/Synovium.png - + - + @@ -140340,13 +140350,13 @@ - + EHDAA2 - + GAID @@ -140885,8 +140895,8 @@ - - + + Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16. Consider splitting insular cortex from insular lobe. See https://github.com/obophenotype/uberon/issues/412 @@ -140930,25 +140940,25 @@ insula http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray731.png - + - + - + BTO NIF - + FMA @@ -141087,9 +141097,9 @@ - - - + + + One of the four basal ganglia in each cerebral hemisphere that consists of a thin lamina of gray matter between the lentiform nucleus and the insula[BTO]. The claustrum, which is suspected to be present in all mammals, is a fairly thin (fraction of 1 mm to multiple mms) vertical curved sheet of subcortical gray matter oriented sagittally between the white matter tracts of the external capsule and extreme capsule. The claustrum is lateral to the putamen and medial to the insular cortex and is considered by some sources to be part of the basal ganglia. There are lateral and medial tracts connecting to many cortices and perhaps to the hippocampus, the amygdala, and the caudate nucleus (connections with subcortical centers are a matter of debate)[WP]. @@ -141127,15 +141137,15 @@ claustrum of brain http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg - + - + - + @@ -141148,19 +141158,19 @@ - + ISBN:0471888893 - + ISBN:0471888893 - + NIF @@ -141525,7 +141535,7 @@ - + @@ -141568,14 +141578,14 @@ http://upload.wikimedia.org/wikipedia/commons/2/20/Skinlayers.png https://upload.wikimedia.org/wikipedia/commons/e/e4/Epidermal_layers.png - + - + FMA @@ -141626,8 +141636,8 @@ - - + + @@ -141640,7 +141650,7 @@ - + The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]. @@ -141691,35 +141701,35 @@ hindbrain http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg - + - + - + - + ZFA - + modified-source-relation ABA - + Bgee:AN @@ -141930,7 +141940,7 @@ - + Projection of skin containing the outlets for 15-20 lactiferous ducts arranged cylindrically around the tip. a male mouse has no nipples - mammary tissue regresses during embryonic development FMA makes this part of the breast, whereas in MA it is part of the mammary gland - @@ -141962,14 +141972,14 @@ https://github.com/obophenotype/uberon/issues/1873 http://upload.wikimedia.org/wikipedia/commons/5/59/Female_nipple_profile.jpg - + - + Stedmans @@ -142040,7 +142050,7 @@ - + @@ -142074,14 +142084,14 @@ epithelium of bronchus - + - + FMA @@ -142163,7 +142173,7 @@ - + @@ -142187,14 +142197,14 @@ http://upload.wikimedia.org/wikipedia/commons/f/f4/Brustwarze.JPG https://upload.wikimedia.org/wikipedia/commons/a/ad/Female_Areola.jpg - + - + MA @@ -142229,7 +142239,7 @@ - + @@ -142261,7 +142271,7 @@ arrector muscle of hair - + @@ -142274,7 +142284,7 @@ - + FMA @@ -142542,7 +142552,7 @@ - + The medial preoptic nucleus is bounded laterally by the lateral preoptic nucleus, and medially by the preoptic periventricular nucleus. It releases gonadotropin-releasing hormone, controls copulation in males, and is larger in males than in females.[WP,unvetted]. @@ -142575,14 +142585,14 @@ medial preoptic nucleus http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG - + - + MA @@ -142744,10 +142754,10 @@ - - - - + + + + @@ -142817,46 +142827,46 @@ cerebellum https://upload.wikimedia.org/wikipedia/commons/a/a7/Cerebellum_NIH.png - + - + - + - + - + FMA MA - + NIF ZFA - + ISBN:0471888893 - + definitional @@ -142988,9 +142998,9 @@ - - - + + + @@ -143045,34 +143055,34 @@ substantia nigra http://upload.wikimedia.org/wikipedia/commons/5/5f/Midbraincrosssection.png - + - + - + - + multiple - + NIF - + FMA-abduced-lr @@ -143210,6 +143220,18 @@ + + + + + + + + + + + + A systemic artery that supplies the lung with with oxygenated blood. EMAPA:18608 @@ -143304,7 +143326,7 @@ - + @@ -143336,14 +143358,14 @@ lymphatic vessel endothelium - + - + FMA @@ -143398,8 +143420,8 @@ - - + + A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic[NIF]. The dorsal raphe nucleus is a part of the raphe nucleus and consists of rostral and caudal subdivisions. The rostral aspect of the dorsal raphe is further divided into interfascicular, ventral, ventrolateral and dorsal subnuclei. The projections of the dorsal raphe have been found to vary topographically, and thus the subnuclei differ in their projections. An increased number of cells in the lateral aspects of the dorsal raphe is characteristic of humans and other primates. [WP,unvetted]. TODO check dorsal vs inferior. ZF has no pons. @@ -143445,24 +143467,24 @@ http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png - + - + - + Wikipedia - + Wikipedia @@ -143604,7 +143626,7 @@ - + Dk BAMS:Dk @@ -143636,14 +143658,14 @@ UBERON:0002044 ventral nucleus of posterior commissure - + - + FMA @@ -143744,7 +143766,7 @@ - + One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nucleus in the closed part of the medulla oblongata. It contains cells that give rise to the cuneate tubercle, visible on the posterior aspect of the medulla. It lies laterally to the gracile nucleus and medial to the spinal trigeminal nucleus in the medulla. [WP,unvetted]. Cu @@ -143778,7 +143800,7 @@ cuneate nucleus http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png - + @@ -143793,7 +143815,7 @@ - + FMA @@ -143898,10 +143920,10 @@ - - - - + + + + @@ -143948,44 +143970,44 @@ http://upload.wikimedia.org/wikipedia/commons/a/a3/Illu_thyroid_parathyroid.jpg http://upload.wikimedia.org/wikipedia/commons/c/c6/Illu_endocrine_system.jpg - + - + - + - + - + Wikipedia:Endostyle - + Wikipedia - + Wikipedia - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -144064,7 +144086,7 @@ - + The pontine raphe nucleus is one of the raphe nuclei. It is located in the pontine tegmentum. [WP,unvetted]. @@ -144095,14 +144117,14 @@ pontine raphe nucleus - + - + Wikipedia @@ -144183,7 +144205,7 @@ - + @@ -144258,14 +144280,14 @@ lung https://github.com/obophenotype/uberon/issues/701 - + - + some species only have a single lung @@ -144527,7 +144549,7 @@ - + @@ -144553,7 +144575,7 @@ epithelium of bronchiole - + @@ -144566,7 +144588,7 @@ - + FMA @@ -144671,7 +144693,7 @@ - + @@ -144705,7 +144727,7 @@ zona glomerulosa of adrenal gland http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png - + @@ -144718,7 +144740,7 @@ - + FMA @@ -144754,8 +144776,8 @@ - - + + @@ -144781,11 +144803,11 @@ zona fasciculata of adrenal gland http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png - + - + @@ -144798,13 +144820,13 @@ - + FMA - + FMA @@ -144839,8 +144861,8 @@ - - + + @@ -144866,11 +144888,11 @@ zona reticularis of adrenal gland http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png - + - + @@ -144883,13 +144905,13 @@ - + FMA - + FMA @@ -145038,7 +145060,7 @@ - + A parasympathetic ganglion located in the posterior orbit that contains preganglionic nerves and postganglionic neurons of the oculomotor nerve, connects to the Edinger-Westphal nucleus via the oculomotor nerve and the eye muscles via the short ciliary nerve. the main ciliary ganglion (typically just called the ciliary ganglion) is differentiated from the accessory by connection to the oculomotor nerve. The ciliary ganglion is a parasympathetic ganglion located in the posterior orbit. It measures 1-2 millimeters in diameter and contains approximately 2,500 neurons. Preganglionic axons from the Edinger-Westphal nucleus form synapses with these cells. The postganglionic axons run in the short ciliary nerves and innervate two eye muscles: the sphincter pupillae constricts the pupil, known as Miosis. The opposite, Mydriasis, is the dilation of the pupil. the ciliaris muscle contracts, releasing tension on the Zonular Fibers, making the lens more convex, also known as accommodation. Both of these muscles are involuntary - they are controlled by the autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted][Wikipedia:Ciliary_ganglion]. @@ -145064,14 +145086,14 @@ main ciliary ganglion http://upload.wikimedia.org/wikipedia/commons/3/30/Augennerven.jpg - + - + http://orcid.org/0000-0001-9114-8737 inferred @@ -145128,7 +145150,7 @@ - + @@ -145160,14 +145182,14 @@ http://upload.wikimedia.org/wikipedia/commons/8/83/Gray778.png http://upload.wikimedia.org/wikipedia/en/thumb/8/83/Gray778.png/200px-Gray778.png - + - + MP @@ -145230,7 +145252,7 @@ - + The femoral artery is a large artery in the muscles of the thigh. It is a continuation of external iliac artery where it enters the femoral triangle at the mid inguinal point behind the inguinal ligament. It leaves femoral triangle through apex beneath the sartorius muscle. It enters the popliteal fossa by passing through the 5th osseo-aponeurotic(adductor hiatus) opening of adductor magnus where it becomes the Popliteal Artery. [WP,unvetted]. Artery which supplies blood via branches to the hindlimbs.[AAO] AAO:0010222 @@ -145253,14 +145275,14 @@ femoral artery http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray546.png - + - + FMA WP @@ -145300,9 +145322,9 @@ - - - + + + The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles. assume spelling error for ncit EHDAA2:0004143 @@ -145320,15 +145342,15 @@ truncus arteriosus - + - + - + @@ -145347,19 +145369,19 @@ - + MA - + EHDAA2 - + EHDAA2 @@ -145394,9 +145416,9 @@ - - - + + + The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves.[TAO] relationship loss: develops_from endocardial ring (TAO:0005072)[TAO] @@ -145428,15 +145450,15 @@ endocardial cushion http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png - + - + - + @@ -145449,19 +145471,19 @@ - + ZFA - + ZFA - + Wikipedia https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -145537,8 +145559,8 @@ - - + + The sinus venosus is a large cardiac chamber at the inflow tract that receives venous blood from systemic circulation. precedes the atrium on the venous side of the chordate heart. Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four components of the heart. The sinus venosus also acts as a pacemaker and is the first to contract. Kimmel et al, 1995.[TAO] @@ -145574,24 +145596,24 @@ sinus venosus http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png - + - + - + VHOG - + Bgee:AN @@ -145938,7 +145960,7 @@ - + The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]. BTO:0001509 @@ -145968,14 +145990,14 @@ umbilical vein http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png - + - + cjm @@ -146005,7 +146027,7 @@ - + @@ -146030,14 +146052,14 @@ - + - + The dermis is a layer of skin between the epidermis (with which it makes up the skin) and subcutaneous tissues, and is composed of two layers, the papillary and reticular dermis[WP]. Consider adding a layer-of-skin grouping class for all skin layers @@ -146077,15 +146099,15 @@ dermis http://upload.wikimedia.org/wikipedia/commons/2/23/EpidermisPainted.svg - + - + - + @@ -146098,19 +146120,19 @@ - + FMA - + https://github.com/obophenotype/uberon/wiki/The-neural-crest - + definitional @@ -146166,14 +146188,14 @@ - + - + A fibrous remnant of the allantoic stalk, a narrow fetal canal connecting the apex of the urinary bladder with the umbilicus located in the space of Retzius, between the transversalis fascia anteriorly and the peritoneum posteriorly. its lumen is normally obliterated during development, transforming the urachus into a solid cord, a functionless remnant that persists throughout life as the median umbilical ligament; failure of complete lumen obliteration may result in distinct congenital urachal remnant anomalies[MP]. A fetal canal connecting the bladder with the allantois, persisting throughout life as a cord (median umbilical ligament). [TFD][VHOG] urachal @@ -146198,11 +146220,11 @@ urachus http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png - + - + @@ -146215,13 +146237,13 @@ - + EHDAA2 - + EHDAA2 @@ -146474,7 +146496,7 @@ - + @@ -146499,7 +146521,7 @@ - + Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]. A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells. Le Guellec et al, 2004.[TAO] @@ -146534,11 +146556,11 @@ hypodermis http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg - + - + @@ -146551,13 +146573,13 @@ - + ZFA - + FMA-modified @@ -146637,8 +146659,8 @@ - - + + @@ -146681,24 +146703,24 @@ hair follicle https://upload.wikimedia.org/wikipedia/commons/4/4d/Hair_follicle-en.svg - + - + - + FMA - + DOI:10.1016/j.cub.2008.12.005 @@ -146737,7 +146759,7 @@ - + The main part of the hair which is composed of trichocytes and is divided into the cortex and medulla. TODO - add distinct subclasses for coat hair vs vibrissa hair TODO - check definition of trichocyte in CL @@ -146755,14 +146777,14 @@ hair shaft - + - + DOI:10.1016/j.cub.2008.12.005 @@ -147233,8 +147255,8 @@ - - + + A cardiac ventricle that is in the right side of the heart. The muscular chamber on the right and in front of the left ventricle. It generally receives venous blood from the right atrium and conveys it into the pulmonary artery. [(1988)_Dorian_AF, Amsterdam, Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B._Anatomy, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier's_Encyclopaedic_Dictionary_of_Medicine][VHOG] @@ -147265,24 +147287,24 @@ heart right ventricle http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - + - + - + PMID:17276708 - + cjm @@ -147461,7 +147483,7 @@ - + Cardiac chamber through which blood leaves the heart. A chamber of the heart that receives blood from one or more atria and pumps it by muscular contraction into the arteries.[AAO] One of four heart chambers.[TAO] @@ -147500,14 +147522,14 @@ cardiac ventricle - + - + Bgee:AN @@ -147564,8 +147586,8 @@ - - + + The vascular channel in the fetus passing through the liver and joining the umbilical vein with the inferior vena cava. add class for fetal shunt? The vascular channel in the fetus passing through the liver and joining the umbilical vein with the inferior vena cava. [TFD][VHOG] @@ -147587,11 +147609,11 @@ ductus venosus http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png - + - + @@ -147604,13 +147626,13 @@ - + EHDAA2 - + cjm @@ -147670,7 +147692,7 @@ - + A cardiac ventricle that is in the left side of the heart. Thick-walled muscular chamber constituting the left border and apex of the heart. It receives oxygenated blood from the left atrium through the mitral orifice and send it off into the aorta. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] @@ -147702,14 +147724,14 @@ heart left ventricle http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - + - + GO @@ -147841,9 +147863,9 @@ - - - + + + A valve at the opening of the sinus venosus into the primordial atrium[TFD,modified]. in humans and mouse this is the opening from SV into right atrium. This class represents the valve connecting the SV to any atrium and is applicable to animals with a single atrium FMA:71120 @@ -147857,34 +147879,34 @@ sinoatrial valve - + - + - + - + ZFA-modified - + ZFA-modified - + PMID:15797462 ZFA @@ -147914,7 +147936,7 @@ - + @@ -147927,7 +147949,7 @@ - + The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]. The canal connecting the primitive atrium and ventricle in fishes and amniotes embryo. [TFD][VHOG] The heart is the first organ to form and function in a vertebrate. (...) Septation of the AV canal is initiated with the formation of inferior and superior endocardial cushions in response to signaling from the overlying myocardium. (...) Analysis of zebrafish mutants with cardiovascular defects uncovered a previously unexpected level of conservation between zebrafish and human cardiovascular physiology.[uncertain][VHOG] @@ -147957,24 +147979,24 @@ atrioventricular canal http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray464.png - + - + - + EHDAA2 - + Bgee:AN @@ -148050,8 +148072,8 @@ - - + + The lateral thoracic vein is a tributary of the axillary vein. It runs with the lateral thoracic artery and drains the serratus ventralis muscle and the Pectoralis major muscle. Normally, the thoracoepigastric vein exists between this vein and superficial epigastric vein (a tributary of femoral vein), to act as a shunt for blood if the portal system (through the liver) develops hypertension or a blockage. [WP,unvetted]. EMAPA:37163 @@ -148067,24 +148089,24 @@ lateral thoracic vein http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png - + - + - + FMA/obol - + FMA/obol @@ -148123,7 +148145,7 @@ - + Companion vein of the thoracodorsal artery, draining the apical part of the latissimus dorsi and merging with the circumflex scapular vein to form a subscapular vein. EMAPA:37198 @@ -148134,14 +148156,14 @@ thoracodorsal vein - + - + FMA/obol @@ -148812,7 +148834,7 @@ - + @@ -148854,14 +148876,14 @@ skin of body http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg - + - + Wikipathways:WP2062 @@ -149165,7 +149187,7 @@ - + @@ -149222,7 +149244,7 @@ limb - + @@ -149235,7 +149257,7 @@ - + extends to stem tetrapods such as Eusthenopteron @@ -149751,7 +149773,7 @@ - + @@ -149764,7 +149786,7 @@ - + @@ -149814,25 +149836,25 @@ spleen https://upload.wikimedia.org/wikipedia/commons/d/d6/Illu_spleen.jpg - + - + - + FMA MA - + multiple sources - true spleen appear in jawed vertebrates @@ -149887,27 +149909,27 @@ - - - - - + + + + + - + - - - + + + @@ -149986,39 +150008,39 @@ liver https://upload.wikimedia.org/wikipedia/commons/6/64/Leber_Schaf.jpg - + - + - + - + - + - + - + - + - + @@ -150033,55 +150055,55 @@ - + FMA - + EHDAA2 - + ZFA - + EHDAA2 - + ZFA - + ZFA-weakened - + definitional - + EHDAA2 - + http://www.stembook.org/node/512 @@ -150347,7 +150369,7 @@ - + @@ -150360,7 +150382,7 @@ - + @@ -150413,11 +150435,11 @@ https://upload.wikimedia.org/wikipedia/commons/b/b1/GallbladderAnatomy-en.svg https://upload.wikimedia.org/wikipedia/commons/f/f4/Abdomal_organs.svg - + - + @@ -150430,7 +150452,7 @@ - + MA ZFA cjm @@ -150438,7 +150460,7 @@ - + definitional @@ -150808,7 +150830,7 @@ - + @@ -150821,7 +150843,7 @@ - + @@ -150870,24 +150892,24 @@ kidney - + - + - + FMA - + definitional @@ -151062,7 +151084,7 @@ - + @@ -151104,7 +151126,7 @@ jejunum http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg - + @@ -151118,7 +151140,7 @@ - + Wikipedia @@ -151392,9 +151414,9 @@ - - - + + + @@ -151438,15 +151460,15 @@ Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104 pronephros - + - + - + @@ -151459,19 +151481,19 @@ - + OG - + GO - + ZFA @@ -151853,7 +151875,7 @@ - + @@ -151879,14 +151901,14 @@ solitary tract nuclear complex - + - + MA-abduced @@ -152188,7 +152210,7 @@ - + @@ -152227,14 +152249,14 @@ superior olivary complex http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png - + - + NIFSTD @@ -152329,7 +152351,7 @@ - + @@ -152376,14 +152398,14 @@ cerebellar cortex https://upload.wikimedia.org/wikipedia/commons/a/a7/Cerebellum_NIH.png - + - + Wikipedia @@ -152566,7 +152588,7 @@ - + @@ -152604,14 +152626,14 @@ anterior lobe of cerebellum http://upload.wikimedia.org/wikipedia/commons/1/13/CerebellumRegions.jpg - + - + Wikipedia @@ -152781,7 +152803,7 @@ - + @@ -152800,8 +152822,8 @@ - - + + A cardial valve in the atrioventricular region that separates the atrium from the ventricle and prevent backflow from the ventricles into the atria during systole. The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001.[TAO] Valve in the heart through which blood flows from the atria to the ventricles. [TFD][VHOG] @@ -152826,35 +152848,35 @@ atrioventricular valve - + - + - + - + EHDAA2 - + PMID:15797462 ZFA - + FMA @@ -153040,9 +153062,9 @@ - - - + + + An atrioventricular valve that is part of the outflow part of the left atrium. @@ -153075,34 +153097,34 @@ mitral valve http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg - + - + - + - + FMA - + FMA - + FMA @@ -153165,7 +153187,7 @@ - + Layer of the dentate gyrus lying deep to the granule cell layer, within the opening of the C or V formed by the granule cell layer characterized by loosely packed polymorphic cells. BAMS:Hil BAMS:hdg @@ -153188,14 +153210,14 @@ Merge with CA4? hilus of dentate gyrus - + - + NIFSTD @@ -153496,7 +153518,7 @@ - + @@ -153550,7 +153572,7 @@ subcommissural organ http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png - + @@ -153563,7 +153585,7 @@ - + MA @@ -153737,7 +153759,7 @@ - + Nucleus that is part of the oculomotor nerve complex consisting of preganglionic parasympathetic neurons situated close to the midline at the level of the superior colliculus (Heimer, the Human Brain and Spinal Cord, 1994, pg 244). @@ -153788,14 +153810,14 @@ parvocellular oculomotor nucleus https://github.com/obophenotype/uberon/issues/2658 - + - + FMA MA ZFA @@ -153980,7 +154002,7 @@ - + The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted]. @@ -154008,14 +154030,14 @@ pedunculopontine tegmental nucleus - + - + MA FMA NIFSTD @@ -154288,9 +154310,9 @@ - - - + + + A group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive. @@ -154317,34 +154339,34 @@ UBERON:0002144 peripeduncular nucleus - + - + - + - + NIFSTD - + MA - + NIF @@ -154424,7 +154446,7 @@ - + IP BAMS:IPN @@ -154455,14 +154477,14 @@ interpeduncular nucleus - + - + NIF @@ -154744,7 +154766,7 @@ - + @@ -154802,14 +154824,14 @@ locus ceruleus http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png - + - + check ZFA NIFSTD @@ -154930,14 +154952,14 @@ - + - + Nucleus containing parasympathetic neurons giving rise to the parasympathetic division of the facial nerve, innervating the salivary glands (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 703). @@ -154973,24 +154995,24 @@ superior salivatory nucleus http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png - + - + - + NIFSTD - + definitional @@ -155453,7 +155475,7 @@ - + Regional part of medullary white matter (according to Neuronames) primarily found at the level of the pons, consisting of a very large bundle of fibers originating in the pontine nuclei projecting to the cerebellum (MM). BAMS:BP @@ -155488,14 +155510,14 @@ middle cerebellar peduncle http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray705.png - + - + FMA @@ -155734,7 +155756,7 @@ - + A nucleus of the lateral medullary nuclear complex. @@ -155767,7 +155789,7 @@ lateral reticular nucleus - + @@ -155780,7 +155802,7 @@ - + FMA @@ -155995,7 +156017,7 @@ - + The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]. @@ -156028,14 +156050,14 @@ nucleus raphe magnus http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png - + - + FMA NIF Wikipedia @@ -156116,7 +156138,7 @@ - + The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]. @@ -156145,14 +156167,14 @@ nucleus raphe pallidus http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png - + - + FMA @@ -156338,7 +156360,7 @@ - + PrP BAMS:PRP @@ -156366,14 +156388,14 @@ UBERON:0002160 nucleus prepositus - + - + NIFSTD @@ -156447,7 +156469,7 @@ - + Nucleus in the caudal medulla that receive projections primarily from ipsilateral dorsal root ganglion cells via the posterior column of the spinal cord. in species with reduced hindlimbs (e.g. cetaceans) the size of this nucleus is reduced @@ -156480,7 +156502,7 @@ gracile nucleus http://upload.wikimedia.org/wikipedia/commons/d/df/Gray688.png - + @@ -156495,7 +156517,7 @@ - + Wikipedia @@ -156578,7 +156600,7 @@ - + @@ -156623,7 +156645,7 @@ area postrema http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png - + @@ -156636,7 +156658,7 @@ - + MA ZFA @@ -156743,7 +156765,7 @@ - + Regional part of medullary white matter (according to Neuronames) primarily found at the level of the open medulla, consisting of a large bundle of fibers projecting to and projecting from the cerebellum. The icp is continuous with the dorsal spinocerebellar tract and also contains a large number of fibers originating in the inferior olivary complex (MM). BAMS:icp @@ -156777,14 +156799,14 @@ inferior cerebellar peduncle http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png - + - + FMA @@ -156939,7 +156961,7 @@ - + The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Layer that lines the lumen of the heart.[TAO] Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO] @@ -156981,14 +157003,14 @@ endocardium http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png - + - + Bgee:AN @@ -157297,8 +157319,8 @@ - - + + @@ -157330,24 +157352,24 @@ alveolar sac - + - + - + MA - + FMA @@ -158134,7 +158156,7 @@ - + The white substance of the spinal cord lying on either side between the ventral median fissure and the ventral roots of the spinal nerves. FMA:74003 @@ -158159,14 +158181,14 @@ ventral funiculus of spinal cord http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg - + - + FMA-abduced-lr @@ -158334,7 +158356,7 @@ - + @@ -158375,14 +158397,14 @@ main bronchus - + - + EHDAA2 @@ -158428,7 +158450,25 @@ - + + + + + + + + + + + + + + + + + + + @@ -158467,14 +158507,14 @@ lobar bronchus http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg - + - + FMA @@ -158525,7 +158565,31 @@ - + + + + + + + + + + + + + + + + + + + + + + + + + @@ -158556,14 +158620,14 @@ segmental bronchus http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg - + - + FMA @@ -158692,9 +158756,9 @@ - - - + + + The conducting airway of the lungs found terminal to the bronchi; these structures contain neither cartilage nor mucous-secreting glands; the epithelium of the bronchioles becomes thinner with each branching. bronchiolar lacks submucosa and cartilage plates; they have 3 layers: mucosa, muscular layer and outer layer @@ -158724,34 +158788,34 @@ bronchiole https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png - + - + - + - + MA - + ncit - + FMA @@ -158860,7 +158924,7 @@ - + @@ -158900,14 +158964,14 @@ respiratory bronchiole https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png - + - + ISBN:0123813611 @@ -159089,8 +159153,8 @@ - - + + Part of the hippocampal formation that is bounded by the entorhinal cortex and area CA1. It is characterized on the CA1 border by an abrupt widening of the pyramidal cell layer. A molecular layer is present that is continuous with that of CA1, although the stratum radiatum is no longer present. The stratum oriens is also not present. adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 468). @@ -159130,24 +159194,24 @@ subiculum https://upload.wikimedia.org/wikipedia/commons/9/99/Hippocampus.gif - + - + - + NIFSTD - + Wikipedia @@ -159507,23 +159571,23 @@ - + - - + + - - + + @@ -159586,54 +159650,54 @@ adenohypophysis http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray1181.png - + - + - + - + - + - + ZFA - + ZFA - + ZFA - + PMID:19084529 - + NCBIBook:NBK53175 ZFA @@ -159789,7 +159853,7 @@ - + Elevation on the ventral surface of the brain located at the zone of attachment between the hypothalamic floor and the hypophysis (Butler and Hodos, Comparative Vertebrate Neuroanatomy, 2nd ed., 2005, pg. 446). Region of the neurohypophysis.[AAO] It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] @@ -159832,14 +159896,14 @@ median eminence of neurohypophysis http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG - + - + ISBN:0471888893 @@ -159936,16 +160000,16 @@ - - + + - - + + The posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation such as oxytocin and antidiuretic hormon. request magnocellular cell from CL. Request oxytocin secretion from GO. Notes: 'The hypophysis or pituitary gland is derived, in part from an ectodermal outpocketing of the stomodeum (Rathke's Pouch) and in part from the floor of the diencephalon' @@ -160005,19 +160069,19 @@ neurohypophysis http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG - + - + - + - + @@ -160030,25 +160094,25 @@ - + ZFA - + PMID:19084529 - + Wikipedia - + Wikipedia @@ -160220,7 +160284,7 @@ - + @@ -160278,7 +160342,7 @@ integument - + @@ -160291,7 +160355,7 @@ - + FMA @@ -160607,7 +160671,7 @@ - + Vasculature that is part of the eye region. not part of the eye in ZFA. Note this changed to a blood vessel in ZFA @@ -160628,14 +160692,14 @@ vasculature of eye - + - + ISBN:0781772214 @@ -160694,7 +160758,7 @@ - + @@ -160734,14 +160798,14 @@ musculoskeletal system - + - + check ctenophore @@ -160790,7 +160854,7 @@ - + @@ -160824,7 +160888,7 @@ manubrium of sternum http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png - + @@ -160837,7 +160901,7 @@ - + ISBN:0073040584 @@ -160878,9 +160942,9 @@ - - - + + + @@ -160930,34 +160994,34 @@ mammillary body http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png - + - + - + - + GO - + ABA - + GO definition @@ -161083,7 +161147,7 @@ - + A cartilaginous extension to the distal part of the sternum. this class may represent a mixed bony-cartilage element, or it may be the superclass of either purely cartilage or purely ossified elements usually ossified in the adult human. By age 15 to 29, the xiphoid usually fuses to the body of the sternum with a fibrous joint. Unlike the synovial articulation of major joints, this is non-movable. Much the way the first seven ribs articulate with the sternum, the cartilage in the celiac plexus joins on the xiphoid process, reinforcing it, and indirectly attaches the costal cartilage to the sternum. @@ -161111,14 +161175,14 @@ xiphoid process http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray117.png - + - + ISBN:0073040584 @@ -161202,7 +161266,7 @@ - + @@ -161224,14 +161288,14 @@ sternebra http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg - + - + MA @@ -161254,7 +161318,7 @@ - + Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis.[FMA]. A joint where fibrous tissue such as ligament connects two calcified tissues.[TAO] AEO:0000178 @@ -161274,7 +161338,7 @@ fibrous joint - + @@ -161287,7 +161351,7 @@ - + AEO @@ -161352,7 +161416,7 @@ - + @@ -161383,14 +161447,14 @@ nerve root - + - + we do not commit to CNS or PNS to allow for flexibility with this class @@ -161954,7 +162018,7 @@ - + @@ -161982,7 +162046,7 @@ Gene notes: Gsc and Prx1 are essential for tympanic ring development tympanic ring - + @@ -161995,7 +162059,7 @@ - + MA @@ -162053,7 +162117,7 @@ - + Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Monro in the third ventricle (adapted from Wikipedia via NIF). @@ -162080,7 +162144,7 @@ subfornical organ http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png - + @@ -162093,7 +162157,7 @@ - + MA-modified @@ -162163,7 +162227,7 @@ - + @@ -162193,7 +162257,7 @@ https://github.com/obophenotype/uberon/issues/1795 http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png - + @@ -162206,7 +162270,7 @@ - + MA ZFA @@ -162321,8 +162385,8 @@ - - + + From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]. EHDAA2 structure is embryonic The blind extremity of the endolymphatic duct. [TFD][VHOG] @@ -162346,11 +162410,11 @@ endolymphatic sac - + - + @@ -162363,13 +162427,13 @@ - + VHOG - + EHDAA2 @@ -162497,7 +162561,7 @@ - + The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs, which in humans is from the eighth rib to the tenth rib. we treat margin and arch in FMA as equivalent here, as a temporary measure. This may be split in future. We follow MA in making this a part of the rib. EMAPA:37491 @@ -162517,7 +162581,7 @@ costal arch http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray115.png - + @@ -162530,7 +162594,7 @@ - + MA @@ -162667,15 +162731,15 @@ - + - - + + @@ -162722,34 +162786,34 @@ http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg - + - + - + - + MA - + Wikipedia:Scala_media - + https://github.com/obophenotype/uberon/issues/387 @@ -162833,7 +162897,7 @@ - + An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs.[TAO] @@ -162868,14 +162932,14 @@ rib - + - + definitional @@ -162929,16 +162993,16 @@ - - + + - - + + @@ -162969,45 +163033,45 @@ interparietal bone - + - + - + - + - + vault series ISBN:0073040584 - + PMID:11523816 - + MP:0000077 - + definitional @@ -163088,7 +163152,7 @@ - + @@ -163111,7 +163175,7 @@ head of rib http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png - + @@ -163124,7 +163188,7 @@ - + PMID:15906248 @@ -163160,7 +163224,7 @@ - + EMAPA:36014 FMA:7577 MA:0001416 @@ -163175,14 +163239,14 @@ UBERON:0002231 body of rib - + - + PMID:15906248 @@ -163273,7 +163337,7 @@ - + The overlaying membrane of the cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells; sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads to fluctuations in hair cell membrane potential, transducing sound into electrical signals[MP,modified]. The tectorial membrane (TM) is one of two acellular gels in the cochlea of the inner ear, the other being the basilar membrane (BM). The TM is located above the sulcus spiralis internus and the spiral organ of Corti and extends along the longitudinal length of the cochlea parallel to the BM. Radially the TM is divided into three zones, the limbal, middle and marginal zones. Of these the limbal zone is the thinnest (transversally) and overlies the auditory teeth of Huschke with its inside edge attached to the spiral limbus. The marginal zone is the thickest (transversally) and is divided from the middle zone by Hensen's Stripe. It overlies the sensory inner hair cells and electrically-motile outer hair cells of the organ of Corti and during acoustic stimulation stimulates the inner hair cells through fluid coupling, and the outer hair cells via direct connection to their tallest stereocilia[Wikipedia:Tectorial_membrane_(cochlea)]. in some squamate lineages, the tectorial membrane may not cover the whole cochlear duct/papilla. In some lineages, the tectorial membrane is divided into units called sallets[ISBN:9780387714691] @@ -163296,7 +163360,7 @@ tectorial membrane of cochlea - + @@ -163309,7 +163373,7 @@ - + limbal zone @@ -163449,8 +163513,8 @@ - - + + The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]. EMAPA:37736 @@ -163468,24 +163532,24 @@ tubercle of rib - + - + - + FMA - + PMID:15906248 @@ -163764,15 +163828,15 @@ - + - - + + Part of the central nervous system located in the vertebral canal continuous with and caudal to the brain; demarcated from brain by plane of foramen magnum. It is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate, and surrounds the central canal. (CUMBO). TODO - add superclass to unify with VNC? @@ -163829,34 +163893,34 @@ spinal cord http://upload.wikimedia.org/wikipedia/commons/5/58/Spinal_cord_direv.svg - + - + - + - + ZFA - + definitional - + definitional @@ -164066,7 +164130,7 @@ - + @@ -164097,14 +164161,14 @@ nucleus pulposus http://upload.wikimedia.org/wikipedia/commons/d/d9/Cervical_vertebra_english.png - + - + mah ISBN:0073040584 Wikipedia @@ -164201,15 +164265,15 @@ - - + + - + One of the bones of the upper jaw situated between and in front of the maxillae[VHOG]. requires checking embryonic vs adult; isa fetal organ part in FMA; adult bone of upper jaw in AAO and ZFA; split. Note that we have loops if we add develops_from UBERON:0005620 primary palate @@ -164247,34 +164311,34 @@ premaxilla http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png - + - + - + - + ISBN:0073040584 - + VHOG - + Bgee:AN @@ -164603,7 +164667,7 @@ - + @@ -164638,14 +164702,14 @@ uterine horn http://upload.wikimedia.org/wikipedia/commons/2/27/Illu_female_pelvis.jpg - + - + MA @@ -164674,7 +164738,7 @@ - + The passage between the venous and arterial mesocardia -i.e., between the aorta and pulmonary artery in front and the superior vena cava behind. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside.[WP,unvetted]. transverse sinus EHDAA2:0002077 @@ -164691,14 +164755,14 @@ transverse pericardial sinus http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png - + - + MA @@ -164833,11 +164897,11 @@ - - - - - + + + + + The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]. EMAPA:37603 FMA:77177 @@ -164856,23 +164920,23 @@ iliocostalis muscle http://upload.wikimedia.org/wikipedia/commons/8/89/Iliostalis.png - + - + - + - + - + @@ -164885,33 +164949,33 @@ - + Wikipedia - + dbpedia - + Sacrum/Illiac Crest/Spinous Processes of lower lumbar/thoracic vertebrae dbpedia - + Sacrum/Illiac Crest/Spinous Processes of lower lumbar/thoracic vertebrae dbpedia - + Ribs dbpedia @@ -165028,7 +165092,7 @@ - + An embryological anatomical structure that forms an open connection between the initial area of development of the thyroid gland and its final position; it is located exactly midline, between the anterior 2/3rds and posterior 1/3rd of the tongue; this duct normally atrophies and closes off as the foramen cecum before birth. An embryonic duct extending between the thyroid primordium and the posterior tongue. [TFD][VHOG] A duct, called the thyroglossal duct in mammals, is considered to be characteristic of thyroid development. The thyroglossal duct, degenerating in many species during late development, marks the way the thyroid primordium relocates during embryonic development from the pharynx to its position deep in the cervical mesenchyme. We cannot exclude that the duct of the endostyle and the thyroglossal duct may have evolved independently, but as they both represent a more or less persistent connection of the organ to the pharynx, it is likely that they are homologous structures.[well established][VHOG] @@ -165050,7 +165114,7 @@ thyroglossal duct https://upload.wikimedia.org/wikipedia/commons/f/fd/Illu08_thyroid.jpg - + @@ -165063,7 +165127,7 @@ - + MA VHOG @@ -165143,9 +165207,9 @@ - - - + + + An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base. An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base. [TFD][VHOG] (...) the vomeronasal organ is known only in some tetrapods. It is absent in most turtles, crocodiles, birds, some bats, and aquatic mammals. In amphibians, it is in a recessed area off the main nasal cavity. (...) In mammals possesing this organ, it is an isolated area of olfactory membrane within the nasal cavity that is usually connected to the mouth via the nasopalatine duct (reference 1); The opinions concerning the presence and functioning of the vomeronasal organ in humans are controversial. The vomeronasal cavities appear early in human foetuses. (...) Historical examination of the nasal septum revealed the presence of vomeronasal cavities in approximately 70% of adults. In contrast to the situation in other mammals, the organ is not supported by a rigid tube of bone or cartilage (reference 2); (...) the best evidence for the homology of the human VNO to that of other primates (and of mammals in general) is ontogenetic in nature, based on a common embryonic origin from a thickening (vomeronasal primordium) on the medial aspect of each olfactory pit (reference 3); (...) suggesting that lungfish possess a region homologous to the accessory olfactory bulb of tetrapods. Based on these results, it seems appropriate to refer to the recess epithelium as a primordium of the vomeronasal organ (reference 4). [debated][VHOG] @@ -165179,34 +165243,34 @@ vomeronasal organ http://upload.wikimedia.org/wikipedia/commons/8/84/Gray51.png - + - + - + - + Wikipedia - + Wikipedia - + EHDAA2-abduced @@ -165279,8 +165343,8 @@ - - + + @@ -165333,24 +165397,24 @@ dorsal horn of spinal cord http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg - + - + - + FMA-abduced-lr - + GO @@ -165492,7 +165556,7 @@ - + @@ -165543,14 +165607,14 @@ ventral horn of spinal cord - + - + FMA-abduced-lr @@ -165681,7 +165745,7 @@ - + The white substance of the spinal cord lying on either side between the posterior median sulcus and the dorsal root. ZFA class is undefined. We currently do not place this as part of the DCML pathway as this would lead to taxon constraint violations. FMA:77461 @@ -165705,14 +165769,14 @@ dorsal funiculus of spinal cord http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg - + - + FMA-abduced-lr @@ -166011,7 +166075,7 @@ - + @@ -166060,7 +166124,7 @@ dorsal root of spinal cord https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg - + @@ -166073,7 +166137,7 @@ - + Wikipedia @@ -166235,8 +166299,8 @@ - - + + @@ -166273,11 +166337,11 @@ lentiform nucleus http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray741.png - + - + @@ -166290,14 +166354,14 @@ - + BTO EMAPA - + MA @@ -166356,8 +166420,8 @@ - - + + @@ -166424,24 +166488,24 @@ http://upload.wikimedia.org/wikipedia/commons/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg http://upload.wikimedia.org/wikipedia/commons/f/f9/1543,Vesalius%27OlfactoryBulbs.jpg - + - + - + ZFA - + ISBN:0471888893 @@ -166856,8 +166920,8 @@ - - + + The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]. @@ -166883,24 +166947,24 @@ laterodorsal tegmental nucleus - + - + - + MA - + FMA label @@ -167061,7 +167125,7 @@ - + The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks. FMA:77663 MA:0001293 @@ -167070,14 +167134,14 @@ UBERON:0002269 pupillary membrane - + - + MA-modified @@ -167094,10 +167158,10 @@ - - - - + + + + @@ -167110,7 +167174,7 @@ - + @@ -167144,23 +167208,23 @@ hyaloid artery http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + - + - + - + - + @@ -167173,31 +167237,31 @@ - + Wikipedia - + ZFA - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -167501,7 +167565,7 @@ - + The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminæ spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]. EMAPA:35496 @@ -167521,14 +167585,14 @@ lamina of spiral limbus http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray930.png - + - + MA @@ -167562,7 +167626,7 @@ - + A concavity in the floor of the cochlear duct, formed by either the overhanging vestibular lip (inner spiral sulcus) or the spiral prominence and the spiral organ (outer spiral sulcus). EMAPA:35800 FMA:77744 @@ -167572,14 +167636,14 @@ UBERON:0002277 spiral sulcus - + - + MA @@ -167595,7 +167659,7 @@ - + @@ -167622,14 +167686,14 @@ perilymphatic space - + - + ZFA @@ -167707,7 +167771,7 @@ - + @@ -167760,14 +167824,14 @@ otolith http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg - + - + MP Wikipedia @@ -167940,8 +168004,8 @@ - - + + The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]. represented as a wall in FMA. MESH def implies part of spiral ligament but better represented as adjacency / overlaps BIRNLEX:2525 @@ -167970,25 +168034,25 @@ stria vascularis of cochlear duct http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png - + - + - + FMA MA - + pigment cells NCBIBook:NBK53175 @@ -168184,7 +168248,7 @@ - + A brain ventricle that is part of a telencephalon. In mammals and species with an evaginated telencephalon, this is one of a pair of lateral structures, one in each hemisphere. The lateral ventricles are part of the ventricular system of the brain. Classified as part of the telencephalon, they are the largest of the ventricles. The lateral ventricles connect to the central third ventricle through the interventricular foramina of Monro[WP]. @@ -168237,14 +168301,14 @@ telencephalic ventricle http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png - + - + material to immaterial EHDAA2 @@ -168341,7 +168405,7 @@ - + @@ -168389,14 +168453,14 @@ third ventricle http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png - + - + EHDAA2 @@ -168643,7 +168707,7 @@ - + Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone). The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] @@ -168705,14 +168769,14 @@ midbrain cerebral aqueduct http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png - + - + EHDAA2 @@ -168930,8 +168994,8 @@ - - + + @@ -168993,11 +169057,11 @@ central canal of spinal cord http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg - + - + @@ -169010,13 +169074,13 @@ - + MA - + FMA @@ -169335,7 +169399,7 @@ - + @@ -169358,7 +169422,7 @@ scala media http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png - + @@ -169371,7 +169435,7 @@ - + FMA @@ -169389,7 +169453,7 @@ - + @@ -169419,7 +169483,7 @@ dorsal mesentery http://upload.wikimedia.org/wikipedia/commons/8/85/Gray985.png - + @@ -169432,7 +169496,7 @@ - + EHDAA2 @@ -169737,7 +169801,7 @@ - + @@ -169750,7 +169814,7 @@ - + @@ -169788,24 +169852,24 @@ alveolus of lung https://upload.wikimedia.org/wikipedia/commons/4/46/Alveolus_diagram.svg - + - + - + MA - + PMID:12625309 PMID:12869615 @@ -170011,7 +170075,7 @@ - + @@ -170030,7 +170094,7 @@ - + An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]. BTO:0005157 @@ -170052,24 +170116,24 @@ juxtaglomerular apparatus - + - + - + MA - + GO @@ -170453,8 +170517,8 @@ - - + + @@ -170496,25 +170560,25 @@ hippocampus fimbria http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray749.png - + - + - + Need to determine whether the fimbria is part of the fornix. Sometimes the language suggests it isn't always thought of that way, but I see no useful reason why it should be separate; it all forms one continuous white matter tract. Neuronames and others include this as part of the hippocampal formation (MM) NIFSTD - + MA NIFSTD @@ -170738,7 +170802,7 @@ - + Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). The tectum - a multisensory, topologically mapped structure in the roof of the midbrain presents a remarkable degree of conservation in all vertebrate radiations; although it varies in the extent of its development in different vertebrate classes, there is considerable evidence now to deem its layered structure, its cell types, and its hodological pattern as homologous in all vertebrates.[well established][VHOG] In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi @@ -170777,14 +170841,14 @@ midbrain tectum http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray685.png - + - + Wikipedia @@ -171099,7 +171163,7 @@ - + Regional part of cerebellum consisting of the myelinated axons lying deep to the granule cell layer, excluding the deep cerebellar nuclei and the cerebellar peduncles. CNS white matter that is part of the cerebellum.[TAO] in NIF this is a composite structure; in MA and FMA it is explicitly part of cerebellum. This leads to consistency problems with strict parcellation schemes like ABA, see cerebellar peduncles. In NIF this is a composite structure, this is followed partially here in weakening the relationship to overlaps @@ -171129,14 +171193,14 @@ white matter of cerebellum - + - + FMA-weakened MA-weakened @@ -171384,7 +171448,7 @@ - + @@ -171408,14 +171472,14 @@ glomerular mesangium - + - + GO @@ -171432,9 +171496,9 @@ - - - + + + @@ -171451,34 +171515,34 @@ extraglomerular mesangium - + - + - + - + MA - + MA - + MA @@ -171541,7 +171605,7 @@ - + @@ -171582,14 +171646,14 @@ coelemic cavity lumen - + - + definitional @@ -171694,7 +171758,7 @@ - + Any muscle organ that is part of a back [Automatically generated definition]. EMAPA:35161 @@ -171708,14 +171772,14 @@ muscle of back - + - + prolog @@ -171946,9 +172010,9 @@ - - - + + + @@ -172003,15 +172067,15 @@ notochord http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png - + - + - + @@ -172030,19 +172094,19 @@ - + http://tolweb.org/Chordata/2499 - + ZFA - + EHDAA2 @@ -172127,8 +172191,8 @@ - - + + Somites are spheres of epithelial cells that form sequentially along the anterior-posterior axis of the embryo through mesenchymal to epithelial transition of the presomitic mesoderm. currently classified as an epithelial vesicle, consistent with EHDAA2 and https://github.com/obophenotype/uberon/wiki/The-neural-crest. Consider making 'somitic mesoderm' a separate term and correlate with regionalization processes. Consider moving ZFA term to 'trunk somite' as it is part of the trunk @@ -172174,11 +172238,11 @@ somite http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png - + - + @@ -172191,13 +172255,13 @@ - + GOTAX:0000352 - + ZFA @@ -172675,8 +172739,8 @@ - - + + The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus[GO]. not part of a nephron or distal tubule in MA and FMA @@ -172695,24 +172759,24 @@ macula densa - + - + - + MA - + GO @@ -172742,7 +172806,7 @@ - + @@ -172786,7 +172850,7 @@ corpus callosum http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png - + @@ -172806,7 +172870,7 @@ - + Wikipedia @@ -172917,7 +172981,7 @@ - + @@ -172952,14 +173016,14 @@ UBERON:0002338 lamina propria of bronchus - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -173393,12 +173457,12 @@ - - - - - + + + + + A specialized region of ectoderm found between the neural ectoderm (neural plate) and non-neural ectoderm and composed of highly migratory pluripotent cells that delaminate in early embryonic development from the dorsal neural tube and give rise to an astounding variety of differentiated cell types[MP]. consider including subclasses for pre- and post- migratory (e.g. sheets/paths/streams). @@ -173438,66 +173502,66 @@ http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray644.png https://upload.wikimedia.org/wikipedia/commons/8/8f/Neural_Crest.png - + - + - + - + - + - + - + XAO https://github.com/obophenotype/uberon/wiki/The-neural-crest - + Hall and others restrict NC to vertebrates but we opt for a less restrictive constraint to avoid inconsistencies when areas such as P1 area of pallium in hagfishes inherit cell lineage from telecephalon-contributing NC cells ISBN:0073040584 - + BTO - + PMID:11523831 - + pre migratory https://github.com/obophenotype/uberon/wiki/The-neural-crest - + PMID:11523831 @@ -173703,7 +173767,7 @@ - + Embryonic ectoderm that gives rise to nervous tissue. (...) the ability of ectoderm to produce neuronal cells is a general metazoan feature.[well established][VHOG] neurectodermal @@ -173739,14 +173803,14 @@ neurectoderm - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -173868,15 +173932,15 @@ - - + + - + A region of the serous membrane that forms the innermost layer of the pericardium and the outer surface of the heart. TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer. @@ -173906,34 +173970,34 @@ epicardium - + - + - + - + multiple - + FMA-inferred - + FMA @@ -174117,12 +174181,12 @@ - - - - - + + + + + @@ -174159,27 +174223,27 @@ conducting system of heart - + - + - + - + - + - + @@ -174192,37 +174256,37 @@ - + FMA - + FMA - + FMA - + FMA - + FMA - + FMA @@ -174294,7 +174358,7 @@ - + @@ -174358,7 +174422,7 @@ http://upload.wikimedia.org/wikipedia/commons/d/d2/Sinoatrial_node_low_mag.jpg http://upload.wikimedia.org/wikipedia/commons/d/de/Sinoatrial_node_2_low_mag.jpg - + @@ -174371,7 +174435,7 @@ - + ZFA @@ -174657,8 +174721,8 @@ - - + + @@ -174696,11 +174760,11 @@ http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png http://upload.wikimedia.org/wikipedia/commons/b/b6/ECG_Principle_fast.gif - + - + @@ -174713,13 +174777,13 @@ - + GO - + FMA @@ -174786,10 +174850,10 @@ - - - - + + + + @@ -174819,19 +174883,19 @@ cardiac Purkinje fiber http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png - + - + - + - + @@ -174844,7 +174908,7 @@ - + FMA GO MA @@ -174852,13 +174916,13 @@ - + GO - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -174866,7 +174930,7 @@ - + FMA @@ -175013,7 +175077,7 @@ - + Subdivision of trunk proper, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk[FMA]. perianal FMA has class anal part of perineum, which may be the same as what EHDAA2 calls perineum @@ -175040,7 +175104,7 @@ perineum http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray406.png - + @@ -175053,7 +175117,7 @@ - + EHDAA2 @@ -175090,7 +175154,7 @@ - + @@ -175103,7 +175167,7 @@ - + Serous membrane which is divided into parietal and visceral serous pericardium. EMAPA:19030 FMA:9582 @@ -175117,24 +175181,24 @@ serous pericardium - + - + - + FMA - + FMA @@ -175174,7 +175238,7 @@ - + @@ -175212,14 +175276,14 @@ peritoneum http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png - + - + MP @@ -175271,14 +175335,14 @@ - + - + Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA]. most superficial part of pericardium; continuous with the outer adventitial layer of the neighboring great blood vessels. [Wikipedia:Pericardium] EMAPA:19029 @@ -175294,11 +175358,11 @@ fibrous pericardium - + - + @@ -175311,13 +175375,13 @@ - + FMA - + WP @@ -175352,7 +175416,7 @@ - + Membrane organ that surrounds the brain and the spinal cord. Membrane covering the brain and spinal cord. It is represented by a single layer in fishes, two in amphibians, reptiles and birds and three in mammals (named dura mater, arachnoid and pia mater). [TFD][VHOG] In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] @@ -175390,7 +175454,7 @@ meninx https://upload.wikimedia.org/wikipedia/commons/4/48/Illu_meninges.jpg - + @@ -175403,7 +175467,7 @@ - + Bgee:AN @@ -175460,7 +175524,7 @@ - + @@ -175507,14 +175571,14 @@ http://upload.wikimedia.org/wikipedia/commons/3/31/Gray770-en.svg http://upload.wikimedia.org/wikipedia/commons/6/65/Gray770.png - + - + check-aves ISBN:0073040584 @@ -175555,7 +175619,7 @@ - + @@ -175589,14 +175653,14 @@ arachnoid mater http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray767.png - + - + ISBN:0073040584 @@ -175637,14 +175701,14 @@ - + - + Thick, fibrous meningeal covering surrounding the brain and spinal cord. It is the outermost of the three meningeal coverings. It consists of two layers: the periosteal dura linking the inner surface of the skull and the meningeal dura that lies above the arachnoid dural membrane. The meningeal layer draws away from the periosteal layer and certain locations to form the dural reflections. the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid[Wikipedia:Dura_mater]. @@ -175675,24 +175739,24 @@ dura mater http://upload.wikimedia.org/wikipedia/commons/8/8e/Meninges-en.svg - + - + - + PMID:16496288 - + definitional @@ -175738,7 +175802,7 @@ - + @@ -175763,9 +175827,9 @@ - - - + + + @@ -175804,19 +175868,19 @@ tympanic membrane - + - + - + - + @@ -175829,25 +175893,25 @@ - + MA - + cjm - + Wikipedia - + cjm @@ -175988,7 +176052,7 @@ - + @@ -176044,7 +176108,7 @@ bulbo-urethral gland https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png - + @@ -176057,7 +176121,7 @@ - + check this MA @@ -176139,7 +176203,7 @@ - + @@ -176181,14 +176245,14 @@ prostate gland http://upload.wikimedia.org/wikipedia/commons/a/a1/Prostatelead.jpg - + - + Wikipedia @@ -176316,9 +176380,9 @@ - - - + + + Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]. Anatomical structure which is found on the surface of the kidney and secretes various hormones including epinephrine, norephinephrine, aldosterone, corticosterone, and cortisol.[AAO] All craniates have groups of cells homologous to the mammalian adrenocortical and chromaffin tissues, but they are scattered in and near the kidneys in fishes. (...) The cortical and chromaffin tissues come together to form adrenal glands in tetrapods.[well established][VHOG] @@ -176364,34 +176428,34 @@ http://upload.wikimedia.org/wikipedia/commons/9/9d/Illu_endocrine_system_New.png http://upload.wikimedia.org/wikipedia/commons/c/c6/Illu_endocrine_system.jpg - + - + - + - + FMA-abduced-lr - + Wikipedia - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -176508,9 +176572,9 @@ - - - + + + @@ -176529,8 +176593,8 @@ - - + + Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop. check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland. @@ -176573,23 +176637,23 @@ thymus https://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg - + - + - + - + - + @@ -176602,32 +176666,32 @@ - + XAO - + FMA MA - + XAO - + multiple sources - true thymus appears in jawed vertebrates - + ZFA @@ -176683,7 +176747,7 @@ - + @@ -176735,14 +176799,14 @@ bone marrow http://upload.wikimedia.org/wikipedia/commons/7/74/Gray72-en.svg - + - + FMA MA @@ -176798,7 +176862,7 @@ - + @@ -176840,7 +176904,7 @@ tonsil - + @@ -176853,7 +176917,7 @@ - + cjm @@ -176894,8 +176958,8 @@ - - + + Tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]. tonsillar fossa develops from dorsal portion of pouch 2. Note that pharyngeal and lingual tonsils do not develop from pharyngeal pouches @@ -176923,18 +176987,18 @@ palatine tonsil https://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg - + - + - + the dorsal elongation of the second pouch endoderm of all mammals, with the exception of rodents, gives rise to the epithelial lining of palatine tonsils; in rodents, the ventral portion of the second pouch appears to degenerate whereas the remaining part is incorporated into the lateral border of the pharynx; it appears that rodents no longer require tonsils as their function is carried out by the NALT (Nose/Nasal-Associated Lymphoid Tissue) system in the upper respiratory tract ISBN:1607950324 MP:anna @@ -176943,7 +177007,7 @@ - + Wikipedia @@ -177059,8 +177123,8 @@ - - + + A cartilaginous ring that provides support for the arytenoid cartilages and forms the caudal part of the larynx. Cartilaginous ring that provides support for the arytenoid cartilages. Its ventral part is bent posteriorly to form a V.[AAO] The ringlike cartilage forming the caudal part of the larynx. [TFD][VHOG] @@ -177093,11 +177157,11 @@ cricoid cartilage http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1194.png - + - + @@ -177110,13 +177174,13 @@ - + EHDAA2 - + Wikipedia @@ -177234,8 +177298,8 @@ - - + + Any skeletal muscle that is part of the head region. UBERON:0003899 @@ -177268,24 +177332,24 @@ defined generically so could in theory encompass FBbt:00003260 'skeletal muscle of head', or the muscle of a starfish Aristotle's lantern, but we restrict this to craniates. Skeletal muscles of the head originate from the non-segmented head mesoderm (Noden, 1983; Wachtler et al., 1984) cranial muscle - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + EHDAA2-abduced @@ -177360,7 +177424,7 @@ - + Any muscle that is part of the cervical (neck) region. EMAPA:36050 @@ -177382,14 +177446,14 @@ muscle of neck - + - + prolog @@ -177445,7 +177509,7 @@ - + @@ -177477,14 +177541,14 @@ muscle of abdomen - + - + prolog @@ -177535,7 +177599,7 @@ - + Any muscle organ that is part of a perineum [Automatically generated definition]. EMAPA:36629 @@ -177553,14 +177617,14 @@ perineal muscle - + - + prolog @@ -177612,12 +177676,12 @@ - - - - - + + + + + A large superficial muscle that extends longitudinally from the occipital bone to the lower thoracic vertebrae and laterally to the spine of the scapula (shoulder blade). Its functions are to move the scapulae and support the arm. The trapezius has three functional regions: the superior region (descending part), which supports the weight of the arm; the intermediate region (transverse part), which retracts the scapulae; and the inferior region (ascending part), which medially rotates and depresses the scapulae. [WP,unvetted]. The sternomastoid and the three parts of the trapezius are branchiomeric muscles that have secondarily acquired an attachment to the pectoral girdle. They evolved from the fish cucullaris.[well established][VHOG] @@ -177639,68 +177703,68 @@ trapezius muscle http://upload.wikimedia.org/wikipedia/commons/6/60/Trapezius.png - + - + - + - + - + - + - + external occipital protuberance nuchal ligament medial superior nuchal line spinous processes of vertebrae C7-T12 dbpedia - + external occipital protuberance nuchal ligament medial superior nuchal line spinous processes of vertebrae C7-T12 dbpedia - + posterior border of the lateral third of the clavicle acromion process and spine of scapula dbpedia - + posterior border of the lateral third of the clavicle acromion process and spine of scapula dbpedia - + dbpedia - + dbpedia @@ -177751,10 +177815,10 @@ - - - - + + + + The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]. EHDAA2:0001424 @@ -177779,19 +177843,19 @@ pectoralis major https://upload.wikimedia.org/wikipedia/commons/6/6c/Pectoralis_major.png - + - + - + - + @@ -177804,28 +177868,28 @@ - + lateral pectoral nerve and medial pectoral nerveClavicular head: C5 and C6Sternocostal head: C7 C8 and T1 dbpedia - + anterior surface of the sternum and the superior six costal cartilages and the aponeurosis of the external oblique muscle dbpedia - + anterior surface of the medial half of the clavicle dbpedia - + Lateral lip of intertubercular groove of the humerus dbpedia @@ -177855,8 +177919,8 @@ - - + + @@ -177898,24 +177962,24 @@ rectus abdominis muscle https://upload.wikimedia.org/wikipedia/commons/9/95/Rectus_abdominis.png - + - + - + VHOG - + XAO @@ -177955,9 +178019,9 @@ - - - + + + The supraspinatus is a relatively small muscle of the upper limb that takes its name from its origin from the supraspinous fossa superior to the spine of the scapula. It is one of the four rotator cuff muscles and also abducts the arm at the shoulder. The spine of the scapula separates the supraspinatus muscle from the infraspinatus muscle, which originates below the spine. [WP,unvetted]. EHDAA2:0001967 @@ -177980,35 +178044,35 @@ supraspinatus muscle http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png - + - + - + - + Wikipedia - + supraspinous fossa of the scapula dbpedia - + middle facet of greater tubercle of the humerus dbpedia @@ -178274,7 +178338,7 @@ - + @@ -178338,14 +178402,14 @@ http://upload.wikimedia.org/wikipedia/commons/3/3b/Veins.jpg https://upload.wikimedia.org/wikipedia/commons/5/50/Forearm_labeled.png - + - + MA @@ -178655,7 +178719,7 @@ - + @@ -178694,14 +178758,14 @@ manual digit - + - + PHENOSCAPE:ni @@ -178764,14 +178828,14 @@ - + - + @@ -178818,24 +178882,24 @@ hematopoietic system - + - + - + FMA - + definitional @@ -179089,7 +179153,7 @@ - + Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA]. we follow FMA in making this an organ, but include a separate class for the part that is epithelium, which is equivalent to the EHDAA2 structure. From this we infer the developmental relationship Furrow on the ventral surface of the otic capsule, and occasionally also the parasphenoid, that houses the Eustachian tube.[AAO] @@ -179124,7 +179188,7 @@ pharyngotympanic tube http://upload.wikimedia.org/wikipedia/commons/4/40/Ear-anatomy-text-small-en.svg - + @@ -179137,7 +179201,7 @@ - + UBERON:0010062 @@ -179249,8 +179313,8 @@ - - + + @@ -179297,25 +179361,25 @@ bile duct http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png - + - + - + EMAPA MA - + XAO @@ -179508,7 +179572,7 @@ - + @@ -179544,7 +179608,7 @@ vomer http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg - + @@ -179557,7 +179621,7 @@ - + palatal series ISBN:0073040584 @@ -179638,10 +179702,16 @@ - - - - + + + + + + + + + + @@ -179693,19 +179763,19 @@ maxilla http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png - + - + - + - + @@ -179724,26 +179794,26 @@ - + facial series ISBN:0073040584 - + VHOG - + FMA-abduced-lr - + EHDAA2 @@ -179966,9 +180036,9 @@ - - - + + + The double layer of peritoneum that extends from the liver to the lesser curvature of the stomach and the start of the duodenum. [WP,unvetted]. exact part of and develops from relationships need to be established A membranous extension of the peritoneum from the peritoneal layers covering the ventral and the dorsal surfaces of the stomach and the first part of the duodenum. The lesser omentum extends from the portal fissure of the liver to the diaphragm, where the layers separate to enclose the end of the esophagus. It also forms two ligaments, one associated with the liver, the hepatogastric ligament, and the other, the heptatoduodenal ligament, with the duodenum. [TFD][VHOG] @@ -179992,34 +180062,34 @@ lesser omentum http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray984.png - + - + - + - + FMA - + MA - + EHDAA2 Wikipedia @@ -180155,7 +180225,7 @@ - + @@ -180194,14 +180264,14 @@ visceral pleura - + - + FMA @@ -180274,7 +180344,7 @@ - + @@ -180314,14 +180384,14 @@ pleural cavity http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png - + - + Wikipedia @@ -180381,7 +180451,7 @@ - + An intercostal muscle that aids in forced expiration (quiet expiration is a passive process). Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] @@ -180404,14 +180474,14 @@ internal intercostal muscle http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + - + EHDAA2 @@ -180593,7 +180663,7 @@ - + A double-walled sac containing the heart and the roots of the great vessels. FMA:9868 RETIRED_EHDAA2:0001443 @@ -180607,14 +180677,14 @@ pericardial sac http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png - + - + FMA @@ -180631,7 +180701,7 @@ - + @@ -180688,14 +180758,14 @@ pericardium http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png - + - + MA @@ -180866,7 +180936,7 @@ - + @@ -180921,7 +180991,7 @@ autonomic nervous system http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png - + @@ -180934,7 +181004,7 @@ - + EMAPA MA NIFSTD @@ -181043,9 +181113,9 @@ - - - + + + @@ -181076,15 +181146,15 @@ clitoris http://upload.wikimedia.org/wikipedia/commons/c/cf/Clitoris_anatomy_labeled-en.svg - + - + - + @@ -181097,19 +181167,19 @@ - + MA - + Wikipedia - + EHDAA2 Wikipedia @@ -181936,9 +182006,9 @@ - - - + + + Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum @@ -181973,36 +182043,36 @@ hippocampal formation - + - + - + - + GO ISBN:0471888893 - + MBA-indirect NIFSTD - + Wikipedia:Hippocampus @@ -182097,7 +182167,7 @@ - + @@ -182158,14 +182228,14 @@ fourth ventricle http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png - + - + EHDAA2 @@ -182394,7 +182464,7 @@ - + An epithelium that is part of the mouth and lines the oral cavity, typically stratified squamous, and may be para-, ortho- or non- keratinized. Primary barrier between oral environment and deeper tissues. consider including separate class for developmental structure (adult human is stratified; in EHDAA2 is unilaminar) The epithelium that lines the oral cavity. The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds[ZFIN:ZDB-PUB-060921-12, ZFIN:ZDB-PUB-091204-24]. @@ -182421,14 +182491,14 @@ oral epithelium - + - + AAO-modified @@ -182484,8 +182554,8 @@ - - + + @@ -182513,24 +182583,24 @@ visceral serous pericardium - + - + - + cjm - + FMA @@ -183010,7 +183080,7 @@ - + @@ -183064,14 +183134,14 @@ pars intermedia of adenohypophysis http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray1181.png - + - + FMA ZFA @@ -183260,7 +183330,7 @@ - + @@ -183344,14 +183414,14 @@ pituitary stalk http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG - + - + NIFSTD FMA MA @@ -183567,10 +183637,10 @@ - - - - + + + + @@ -183620,44 +183690,44 @@ striatum http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg - + - + - + - + - + GO - + BTO - + NIF - + NIFSTD @@ -183762,7 +183832,7 @@ - + @@ -183809,7 +183879,7 @@ In some species, parcellations of lobes are not well defined if at all. The primary visual cortex being part of the occiptal lobe hence could refer to it being part of the most posterior region of the mammalian cerebral cortex. primary visual cortex - + @@ -183822,7 +183892,7 @@ - + WP @@ -184018,7 +184088,7 @@ - + A nucleus of brain that is part of a ventral tegmental area. @@ -184070,14 +184140,14 @@ ventral tegmental nucleus - + - + DHBA EMAPA MA @@ -184288,7 +184358,7 @@ - + @@ -184335,14 +184405,14 @@ myenteric nerve plexus - + - + FMA @@ -185104,7 +185174,7 @@ - + Any of the mushroom-shaped papillae, which have a single taste bud at the tip, located mostly on the dorsal anterior portion of the tongue. The fungiform papillae are mushroom shaped e (projections) on the tongue. They are located on the top (dorsal) surface of the tongue, scattered throughout the filiform papilla but mainly at the tip and lateral margins of the tongue. They have taste buds on their superior (upper) surface which can distinguish the five tastes: sweet, sour, bitter, salty, and umami. They have a core of connective tissue. They are innervated by the seventh cranial nerve, more specifically via the submandibular ganglion, chorda tympani, and geniculate ganglion ascending to the solitary nucleus (the sensory component of the Vagus nerve in the brainstem). [WP,unvetted][Wikipedia:Fungiform_papilla]. In the mouse, Fungiform and palatal taste buds are innervated by the geniculate ganglion cells of the facial nerve[DOI:10.1523/JNEUROSCI.5142-05.2006] @@ -185129,7 +185199,7 @@ fungiform papilla http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png - + @@ -185142,7 +185212,7 @@ - + MP-abduced @@ -185219,7 +185289,7 @@ - + @@ -185267,7 +185337,7 @@ decidua http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray33.png - + @@ -185280,7 +185350,7 @@ - + maternal MA @@ -185364,7 +185434,7 @@ - + The mucous secreting gland associated with the mucuous membrane lining the uterus. simple or branched tubular @@ -185392,7 +185462,7 @@ endometrial gland http://upload.wikimedia.org/wikipedia/commons/2/28/Gray1169.png - + @@ -185405,7 +185475,7 @@ - + Wikipedia:Tubular_gland @@ -186022,7 +186092,7 @@ - + Any skeletal muscle organ that is part of a anterior abdominal wall. Examples: the obliques, pyramidalis and transversus abdominus. EHDAA2:0000125 @@ -186039,7 +186109,7 @@ anterior abdominal wall muscle - + @@ -186052,7 +186122,7 @@ - + EHDAA2 @@ -186087,16 +186157,16 @@ - - + + - - + + A bundle of muscles and tendons that is paired and runs more or less vertically. It extends throughout the lumbar, thoracic and cervical regions, and lies in the groove to the side of the vertebral column. isa muscle organ in MA. BTO:0001652 @@ -186123,19 +186193,19 @@ erector spinae muscle group http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png - + - + - + - + @@ -186154,26 +186224,26 @@ - + dbpedia - + EHDAA2 - + Spinous processes of T1 and T2 thoracic vertebrae and the cervical vertebrae dbpedia - + Spinous processes of T1 and T2 thoracic vertebrae and the cervical vertebrae dbpedia @@ -186252,10 +186322,10 @@ - - - - + + + + Any of the posterior thigh muscles. [WP,modified]. check FMA, singular. UBERON:0008538 @@ -186286,45 +186356,45 @@ http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray1239.png - + - + - + - + - + sciatic nerve dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -186448,7 +186518,7 @@ - + @@ -186496,14 +186566,14 @@ lymphoid system http://upload.wikimedia.org/wikipedia/commons/b/b3/TE-Lymphatic_system_diagram.svg - + - + FMA @@ -186713,7 +186783,7 @@ - + Any of the papillae located on the sides of the tongue. Taste-buds, the end-organs of the gustatory sense, are scattered over the mucous membrane of the mouth and tongue at irregular intervals. They occur especially in the sides of the vallate papillae. There is a localized area at the side of the base of the tongue, the foliate papillae, in which they are especially abundant. [WP,unvetted][Wikipedia:Foliate_papilla]. BIRNLEX:4105 @@ -186736,14 +186806,14 @@ foliate papilla http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png - + - + MP-abduced @@ -186940,7 +187010,7 @@ - + @@ -186985,14 +187055,14 @@ autopod region - + - + definitional @@ -187281,8 +187351,8 @@ - - + + A composite structure of the brain stem, which is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)[NIF, based on NN]. TODO - this requires work for making consistent with ABA, which strictly separates cerebellum from brainstem. in MA, cerebellar peduncle is part of both brainstem and cerebellar white matter. BAMS:cbp @@ -187306,24 +187376,24 @@ cerebellar peduncular complex - + - + - + NIF-isa - + MA @@ -187666,7 +187736,7 @@ - + The more medial segment of the globus pallidus. @@ -187730,14 +187800,14 @@ medial globus pallidus https://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif - + - + MA @@ -187994,9 +188064,9 @@ - - - + + + @@ -188050,34 +188120,34 @@ orbitosphenoid http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png - + - + - + - + FMA - + ISBN:0073040584 - + FMA-abduced-lr @@ -188232,7 +188302,7 @@ - + The main division of the lateral geniculate body; consists of two magnocellular layers [TA] (strata magnocellularia [TA]) and four parvocellular layers [TA] (strata parvocellularia [TA]) and serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibers from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe. @@ -188265,14 +188335,14 @@ UBERON:0002479 dorsal lateral geniculate nucleus - + - + NIFSTD @@ -188882,7 +188952,7 @@ - + @@ -188907,14 +188977,14 @@ prostate duct - + - + PMID:18977204 @@ -189068,7 +189138,7 @@ - + The helix is the prominent rim of the pinna. FMA:60992 MA:0002793 @@ -189088,14 +189158,14 @@ helix of outer ear - + - + Wikipedia-uncited @@ -189207,7 +189277,7 @@ - + A suture that connects the two frontal bones of the skull. in humans, the frontal suture is a dense connective tissue structure that divides the two halves of the frontal bone of the skull in infants and children. It usually disappears by the age of six, with the two halves of the frontal bone being fused together. If it does not disappear it may be called a 'metopic suture' or 'sutura frontalis persistens. ' If the suture is not present at birth (craniosynostosis) it will cause a keel-shaped deformity of the skull called 'trigonocephaly. ' It is present in a fetal skull so that the skull can bend and is very elastic at the time of birth. The baby's head literally bends when coming out of the mother's womb. The space is filled as the child grows older. [WP,unvetted] EMAPA:19226 @@ -189230,14 +189300,14 @@ http://upload.wikimedia.org/wikipedia/commons/1/17/Gray134.png https://upload.wikimedia.org/wikipedia/commons/d/d1/Frontal_suture.png - + - + two halves of the frontal bone @@ -189304,7 +189374,7 @@ - + The dense, fibrous connective tissue joint between the parietal bones and the occipital bone. EMAPA:19227 FMA:52933 @@ -189321,14 +189391,14 @@ lambdoid suture https://upload.wikimedia.org/wikipedia/commons/3/3d/Gray188-Lambdoid_suture.png - + - + HP @@ -189377,7 +189447,7 @@ - + The dense, fibrous connective tissue joint between the tetrapod parietal bones. EMAPA:19224 FMA:52929 @@ -189393,14 +189463,14 @@ sagittal suture http://upload.wikimedia.org/wikipedia/commons/2/24/Kort-lang-skalle.gif - + - + both parietals @@ -189443,7 +189513,7 @@ - + @@ -189472,14 +189542,14 @@ uterine artery http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png - + - + FMA-abduced-lr @@ -189648,7 +189718,7 @@ - + @@ -189670,14 +189740,14 @@ stapes base - + - + MA @@ -189925,7 +189995,7 @@ - + @@ -189948,14 +190018,14 @@ cochlear labyrinth http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png - + - + FMA @@ -189977,7 +190047,7 @@ - + The bony arch in vertebrates that extends along the side or front of the skull beneath the eye socket and is formed by the temporal process of the zygomatic bone and the zygomatic process of the temporal bone. The zygomatic arch is significant in evolutionary biology, as it is part of the structures derived from the ancestral single temporal fenestra of the synapsid ancestor of mammals. The zygomatic process of the temporal arises by two roots: an anterior, directed inward in front of the mandibular fossa, where it expands to form the articular tubercle. a posterior, which runs backward above the external acoustic meatus and is continuous with the supramastoid crest. The upper border of the arch gives attachment to the temporal fascia; the lower border and medial surface give origin to the Masseter @@ -190001,7 +190071,7 @@ zygomatic arch https://upload.wikimedia.org/wikipedia/commons/f/f4/Gray188-Sphenozygomatic_suture.png - + @@ -190014,7 +190084,7 @@ - + FMA-abduced-lr @@ -190171,7 +190241,7 @@ - + The greater trochanter (great trochanter) of the femur is a large, irregular, quadrilateral eminence and a part of the skeletal system. It is directed a little lateralward and backward, and, in the adult, is about 1 cm lower than the head. Because the pelvic outlet in the female is larger than in the male, there is a greater distance between the greater trochanters in the female. It has two surfaces and four borders. [WP,unvetted]. EMAPA:37594 FMA:32852 @@ -190190,14 +190260,14 @@ greater trochanter http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png - + - + FMA @@ -190232,7 +190302,7 @@ - + The lesser trochanter (small trochanter) of the femur is a conical eminence, which varies in size in different subjects [WP,unvetted]. EMAPA:37595 FMA:32853 @@ -190251,14 +190321,14 @@ lesser trochanter http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png - + - + FMA @@ -190346,8 +190416,8 @@ - - + + @@ -190373,11 +190443,11 @@ iris epithelium - + - + @@ -190390,13 +190460,13 @@ - + MA - + MP @@ -190759,7 +190829,7 @@ - + @@ -190787,14 +190857,14 @@ trabecula carnea - + - + WP @@ -190867,15 +190937,15 @@ - - + + - + @@ -190915,15 +190985,15 @@ corpus luteum http://upload.wikimedia.org/wikipedia/commons/5/57/Folliclesinovary.jpg - + - + - + @@ -190936,19 +191006,19 @@ - + MA - + MA - + Wikipedia @@ -191006,7 +191076,7 @@ - + @@ -191037,7 +191107,7 @@ https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg - + @@ -191050,7 +191120,7 @@ - + VSAO @@ -191672,8 +191742,8 @@ - - + + @@ -191699,11 +191769,11 @@ tunica media https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg - + - + @@ -191716,13 +191786,13 @@ - + cjm - + cjm @@ -191758,8 +191828,8 @@ - - + + The innermost layer of a blood vessel which is a lining of endothelial cells facing the lumen[Kardong]. the FMA class represents a more generic layer which is the superclass of the layer found in both blood vessels and lymph vessels (and also endocardium) - we should probably follow this structure @@ -191785,11 +191855,11 @@ tunica intima https://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg - + - + @@ -191802,13 +191872,13 @@ - + check for exceptions, e.g. capillaries - + ISBN:0073040584 @@ -192568,7 +192638,7 @@ - + Fin that is one of a pair located ventrally on the organism. TAO:0002278 @@ -192580,7 +192650,7 @@ paired fin - + @@ -192593,7 +192663,7 @@ - + PHENOSCAPE:wd ZFA @@ -192855,10 +192925,10 @@ - - - - + + + + One of a series of paired bulges that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches. One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO] A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down.[well established][VHOG] @@ -192894,19 +192964,19 @@ pharyngeal arch http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png - + - + - + - + @@ -192919,25 +192989,25 @@ - + PMID:16313389 - + http://tolweb.org/Chordata/2499 - + https://github.com/obophenotype/uberon/wiki/The-neural-crest - + PMID:16313389 @@ -193268,7 +193338,7 @@ - + @@ -193324,14 +193394,14 @@ digit - + - + PHENOSCAPE:ni @@ -193405,7 +193475,7 @@ - + Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic. Do not merge with neurogenic placode Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons @@ -193425,7 +193495,7 @@ cranial placode - + @@ -193438,7 +193508,7 @@ - + PMID:11523831 PMID:22512454 @@ -193692,7 +193762,7 @@ - + The Anterior trigeminothalamic tract (or ventral trigeminothalamic tract) serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons . BAMS:v5 @@ -193719,14 +193789,14 @@ ventral trigeminal tract - + - + FMA @@ -193913,7 +193983,7 @@ - + The largest and most prominent of the cell groups of the medial longitudinal fasciculus. ICjl @@ -193945,14 +194015,14 @@ UBERON:0002551 interstitial nucleus of Cajal - + - + FMA @@ -194301,7 +194371,7 @@ - + BAMS:cte BAMS:ctt BIRNLEX:1016 @@ -194320,7 +194390,7 @@ UBERON:0002556 corticotectal tract - + @@ -194333,7 +194403,7 @@ - + NIFSTD @@ -194388,8 +194458,8 @@ - - + + Li BIRNLEX:1018 DHBA:12230 @@ -194403,24 +194473,24 @@ The mesocorticolimbic dopamine (DA) system plays important roles in reward, motivation, learning, memory, and movement. This system arises from the A10 region, comprising the ventral tegmental area and three adjacent midline nuclei (caudal linear nucleus, interfascicular nucleus, and rostral linear nucleus of the raphe)[PMID:21653852] linear nucleus - + - + - + FMA - + PMID:21653852 @@ -195819,7 +195889,7 @@ - + The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted]. BAMS:PRF BAMS:PRN @@ -195848,14 +195918,14 @@ pontine reticular formation http://upload.wikimedia.org/wikipedia/commons/9/9b/Gray701.png - + - + FMA @@ -196158,7 +196228,7 @@ - + BAMS:SLn BIRNLEX:1057 FMA:72404 @@ -196169,7 +196239,7 @@ UBERON:0002578 sublentiform nucleus - + @@ -196182,7 +196252,7 @@ - + FMA @@ -196536,7 +196606,7 @@ - + A commissure that is part of a superior colliculus [Automatically generated definition]. BAMS:SCC @@ -196573,14 +196643,14 @@ commissure of superior colliculus - + - + NIFSTD-modified @@ -196829,7 +196899,7 @@ - + The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]. CCS BIRNLEX:1086 @@ -196850,14 +196920,14 @@ calcarine sulcus - + - + NIFSTD @@ -197008,7 +197078,7 @@ - + Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted]. UBERON:0003032 BAMS:dscp @@ -197039,14 +197109,14 @@ decussation of superior cerebellar peduncle http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png - + - + FMA @@ -197139,8 +197209,8 @@ - - + + Part of the corticospinal tract located in the spinal cord, formed as 75 to 90% of the corticospinal fibers cross to the opposite side of the brainstem in the pyramidal decussation. This tract descends the length of the spinal cord in the lateral white column (Adapted from Brain Info). BAMS:lcsp BAMS:py @@ -197172,11 +197242,11 @@ lateral corticospinal tract http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg - + - + @@ -197189,13 +197259,13 @@ - + FMA - + NIFSTD @@ -197292,7 +197362,7 @@ - + Prepyriform area (or prepiriform cortex) is a portion of the rhinencephalon consisting of paleocortex. Some sources state that it is part of the primary olfactory cortex. @@ -197327,14 +197397,14 @@ prepyriform area - + - + NIFSTD @@ -197602,7 +197672,7 @@ - + Fibers interconnecting the cerebellum and vestibular nuclei, traveling medial to the restiform body (inferior cerebellar peduncle) (Nolte, The Human Brain, 6th ed., pg 497). BAMS:jrb BAMS:jx @@ -197621,14 +197691,14 @@ juxtarestiform body http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png - + - + NIFSTD @@ -197908,7 +197978,7 @@ - + Part of thalamus receiving primary somatic sensory information via the medial lemniscal pathway that projects to the primary somatosensory cortex (adapted from Paxinos, The Rat Nervous System, 2nd Ed, Academic Press, 1995). VP BAMS:VP @@ -197947,7 +198017,7 @@ ventral posterior nucleus of thalamus http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + @@ -197960,7 +198030,7 @@ - + FMA @@ -198076,8 +198146,8 @@ - - + + The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted]. @@ -198131,11 +198201,11 @@ principal sensory nucleus of trigeminal nerve http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png - + - + @@ -198148,13 +198218,13 @@ - + NIF - + Wikipedia @@ -198560,7 +198630,7 @@ - + A small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus[Biology-Online]. A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum[BTO]. TODO - existing definitions, synonyms and relationships in existing AOs seem contradictory; to be resolved. We take the dentate gyrus relationship from BTO, and it is also implied by the FMA synonym. However, FMA says archiortex (embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus) and NIF says limbic lobe (which is more general than hippocampus). ABA xref made on basis of BTO related synonym @@ -198590,14 +198660,14 @@ UBERON:0002601 fasciolar gyrus - + - + NIFSTD @@ -198918,7 +198988,7 @@ - + The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]. BAMS:NLLv @@ -198945,14 +199015,14 @@ ventral nucleus of lateral lemniscus https://upload.wikimedia.org/wikipedia/commons/4/44/Lateral_lemniscus.PNG - + - + FMA NIF @@ -199090,7 +199160,7 @@ - + A cluster of neurites that is part of a nervous system and forms a network of dendrites and axons where synapses are present and in which neuronal somata do not occur. Multi-cell component structure of the central nervous system consisting largely of neuron projections (tracts and synaptic neuropil domains) and associated glial cells. This corresponds to the part of the CNS that is enclosed by the cortex. BIRNLEX:1142 @@ -199111,7 +199181,7 @@ neuropil - + @@ -199124,7 +199194,7 @@ - + FBbt PMID:21062451 @@ -199364,7 +199434,7 @@ - + The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]. @@ -199393,14 +199463,14 @@ cochlear nuclear complex http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png - + - + MA FMA @@ -200337,8 +200407,8 @@ - - + + Part of hypothalamus consisting of hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm visible on the basal surface of the brain (adapted from Wikipedia). TBCN BAMS:TuCn @@ -200372,24 +200442,24 @@ tuber cinereum http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray724.png - + - + - + MA - + FMA @@ -200791,7 +200861,7 @@ - + Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus.the remainder of the inferior frontal gyrus once the pars opercularis and triangularis have been defined (Christine Fennema-Notestine)., NeuroNames. pars orbitalis, inferior frontal gyrus @@ -200814,14 +200884,14 @@ orbital part of inferior frontal gyrus - + - + FMA @@ -200894,8 +200964,8 @@ - - + + The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus. @@ -200924,24 +200994,24 @@ median preoptic nucleus - + - + - + Wikipedia - + Wikipedia @@ -201229,7 +201299,7 @@ - + Component of the inferior frontal gyrus.defined as the second gyrus from the precentral gyrus (Christine Fennema-Notestine). BAMS:IFGTr @@ -201253,14 +201323,14 @@ triangular part of inferior frontal gyrus - + - + FMA @@ -201411,8 +201481,8 @@ - - + + The cerebral crus is the anterior portion of the cerebral peduncle which contains the motor tracts, the plural of which is cerebral crura. In some older texts, it is used as a synonym for the entire cerebral peduncle, not just the anterior portion of it. [WP,unvetted]. CCR BAMS:cp @@ -201447,24 +201517,24 @@ cerebral crus http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png - + - + - + BTO - + FMA-abduced-lr @@ -201599,7 +201669,7 @@ - + MML BAMS:MMM @@ -201626,14 +201696,14 @@ UBERON:0002632 medial part of medial mammillary nucleus - + - + NIFSTD @@ -201719,9 +201789,9 @@ - - - + + + @@ -201782,15 +201852,15 @@ motor nucleus of trigeminal nerve http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png - + - + - + @@ -201803,19 +201873,19 @@ - + ABA - + MA - + NIF @@ -202006,7 +202076,7 @@ - + A loose heterogeneous collection of cells in the anterior hypothalamus, continuous rostrally with the medial and lateral preoptic areas and caudally with the tuber cinereum. @@ -202048,14 +202118,14 @@ anterior nucleus of hypothalamus http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG - + - + WP @@ -202228,7 +202298,7 @@ - + LPul BAMS:LPul @@ -202247,14 +202317,14 @@ UBERON:0002636 lateral pulvinar nucleus - + - + FMA @@ -202320,7 +202390,7 @@ - + The ventral anterior nucleus is a nucleus of the thalamus. VA BAMS:VA @@ -202355,14 +202425,14 @@ ventral anterior nucleus of thalamus http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + - + BTO FMA NIF @@ -203018,7 +203088,7 @@ - + MDD BIRNLEX:1255 DHBA:10399 @@ -203033,14 +203103,14 @@ UBERON:0002645 densocellular part of medial dorsal nucleus - + - + NIFSTD @@ -203199,7 +203269,7 @@ - + See https://github.com/obophenotype/uberon/issues/2229 MDM BIRNLEX:1262 @@ -203226,14 +203296,14 @@ UBERON:0002647 magnocellular part of medial dorsal nucleus - + - + FMA @@ -203395,7 +203465,7 @@ - + Part of Lissauer's tract located in the medulla. resolve distinction between Lissauer's tract and the medullary component BAMS:d1 @@ -203423,7 +203493,7 @@ dorsolateral fasciculus of medulla - + @@ -203436,7 +203506,7 @@ - + FMA @@ -203523,7 +203593,7 @@ - + MDPL BAMS:MDPL BIRNLEX:1276 @@ -203548,14 +203618,14 @@ UBERON:0002650 paralaminar part of medial dorsal nucleus - + - + FMA @@ -203960,7 +204030,7 @@ - + MDPC BAMS:MDPC BIRNLEX:1283 @@ -203988,14 +204058,14 @@ UBERON:0002654 parvocellular part of medial dorsal nucleus - + - + FMA NIFSTD @@ -204239,7 +204309,7 @@ - + consider splitting BAMS:PA BAMS:PAM @@ -204271,7 +204341,7 @@ UBERON:0002656 periamygdaloid area - + @@ -204284,7 +204354,7 @@ - + FMA @@ -204400,7 +204470,7 @@ - + The posterior parahippocampal gyrus is a portion of the parahippocampal gyrus. It can show deterioration in Alzheimer's disease. @@ -204421,14 +204491,14 @@ posterior parahippocampal gyrus - + - + FMA @@ -204489,9 +204559,9 @@ - - - + + + Part of medial lemniscus located within the midbrain. MLMB BAMS:mlmb @@ -204507,15 +204577,15 @@ UBERON:0002658 medial lemniscus of midbrain - + - + - + @@ -204528,19 +204598,19 @@ - + FMA - + NIFSTD - + NIFSTD @@ -204940,7 +205010,7 @@ - + Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone). Any of the groups of neural nuclei situated in the septal region which have afferent and cholinergic efferent connections with a variety of forebrain and brainstem areas including the hippocampus, the lateral hypothalamus, the tegmentum, and the amygdala. The septal nuclei are structures in the middle anteroventral cerebrum that are composed of medium-size neurons grouped into medial, lateral, and posterior groups. The septal nuclei receive reciprocal connections from the olfactory bulb, hippocampus, amygdala, hypothalamus, midbrain, habenula, cingulate gyrus, and thalamus. The septal nuclei play a role in reward and reinforcement along with the nucleus accumbens. In the 1950s, Olds &amp; Milner showed that rats with electrodes implanted in this area will self-stimulate repeatedly in order to experience a euphoric feeling (i.e. press a bar to receive electrical current that will stimulate the neurons). [WP,unvetted][Wikipedia:Septal_nuclei]. @@ -204967,14 +205037,14 @@ septal nuclear complex - + - + NIFSTD @@ -205039,7 +205109,7 @@ - + MML BAMS:ML BAMS:MML @@ -205064,14 +205134,14 @@ UBERON:0002664 lateral part of medial mammillary nucleus - + - + NIFSTD @@ -205158,7 +205228,7 @@ - + BAMS:HiS BAMS:SCG BAMS:Supracallosal_gyrus @@ -205177,7 +205247,7 @@ supracallosal gyrus - + @@ -205190,7 +205260,7 @@ - + FMA @@ -205543,8 +205613,8 @@ - - + + BAMS:ahls BIRNLEX:1327 @@ -205567,11 +205637,11 @@ UBERON:0002669 anterior horizontal limb of lateral sulcus - + - + @@ -205584,13 +205654,13 @@ - + NIFSTD - + NIFSTD @@ -205690,8 +205760,8 @@ - - + + BAMS:aals BIRNLEX:1330 @@ -205716,11 +205786,11 @@ UBERON:0002670 anterior ascending limb of lateral sulcus - + - + @@ -205733,13 +205803,13 @@ - + NIFSTD - + NIFSTD @@ -205933,7 +206003,7 @@ - + BAMS:ascs BIRNLEX:1332 @@ -205946,7 +206016,7 @@ UBERON:0002672 anterior subcentral sulcus - + @@ -205959,7 +206029,7 @@ - + NIFSTD @@ -205994,8 +206064,8 @@ - - + + Nuclear complex containing the vestibular nuclei. In TA they are grouped in both the pons and medulla; DHBA has 'vestibular nuclei of pons', with LVN and SVN underneath; WP+MA says the SVN is in the pons, and GO includes VNC development under pons development, but this is not supported by ABA. Todo - check with NIF. @@ -206033,18 +206103,18 @@ vestibular nuclear complex http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png - + - + - + ABA FMA NIF @@ -206052,7 +206122,7 @@ - + Wikipedia:Vestibular_nuclei @@ -206225,7 +206295,7 @@ - + The ventral supraoptic decussation is the crossover point for signals from the left and right eye, en route respectively to the right and left sides of the visual cortex. Occupying the posterior part of the commissure of the optic chiasma is a strand of fibers, the Ventral supraoptic decussation (commissure of Gudden, Gudden's inferior commissure), which is not derived from the optic nerves; it forms a connecting link between the medial geniculate bodies. [WP,unvetted]. VSOX BAMS:supv @@ -206255,7 +206325,7 @@ ventral supraoptic decussation http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png - + @@ -206268,7 +206338,7 @@ - + FMA @@ -206456,7 +206526,7 @@ - + @@ -206490,14 +206560,14 @@ UBERON:0002679 anterodorsal nucleus of thalamus - + - + FMA NIFSTD @@ -206662,7 +206732,7 @@ - + @@ -206692,14 +206762,14 @@ UBERON:0002681 anteromedial nucleus of thalamus - + - + NIFSTD @@ -206807,7 +206877,7 @@ - + Nucleus located beneath the floor of the 4th ventricle in the pontine tegmentum, containing motor neurons innervating the lateral rectus muscle of the eye (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533). @@ -206860,7 +206930,7 @@ abducens nucleus http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png - + @@ -206873,7 +206943,7 @@ - + ABA ZFA GO @@ -207052,7 +207122,7 @@ - + In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted]. RHS BAMS:rf @@ -207080,14 +207150,14 @@ rhinal sulcus http://upload.wikimedia.org/wikipedia/commons/c/ce/Gehirn,_basal_-_beschriftet_lat.svg - + - + NIFSTD @@ -207167,7 +207237,7 @@ - + The raphe obscurus projects to the cerebellar lobes VI and VII and to crus II along with the nucleus raphe pontis . This so called obscure nucleus has also been implicated in the modulation of the hypoglossal nerve. It has been observed that the ablation of this nucleus causes a change in the firing pattern in the XII nerve . In addition, the raphe obscurus mediates expiration via the inhibitory effect of serotonin and depresses periodic synaptic potentials . It has also been shown that this nucleus stimulates gastrointestinal motor function; microinjections of 5-HT into the n.r. obscurus increase gastric movement . [WP,unvetted]. @@ -207195,14 +207265,14 @@ nucleus raphe obscurus http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png - + - + FMA @@ -207281,7 +207351,7 @@ - + @@ -207322,14 +207392,14 @@ UBERON:0002685 anteroventral nucleus of thalamus - + - + NIFSTD @@ -207560,7 +207630,7 @@ - + X BIRNLEX:1379 DHBA:12653 @@ -207579,14 +207649,14 @@ UBERON:0002687 area X of ventral lateral nucleus - + - + FMA @@ -207745,8 +207815,8 @@ - - + + One of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation. @@ -207783,11 +207853,11 @@ UBERON:0002689 supraoptic crest - + - + @@ -207800,13 +207870,13 @@ - + FMA - + Wikipedia @@ -207950,7 +208020,7 @@ - + @@ -207981,14 +208051,14 @@ UBERON:0002690 anteroventral periventricular nucleus - + - + FMA @@ -208307,8 +208377,8 @@ - - + + BAMS:RaM BIRNLEX:1420 FMA:68874 @@ -208325,24 +208395,24 @@ UBERON:0002692 medullary raphe nuclear complex - + - + - + FMA - + Wikipedia @@ -208746,7 +208816,7 @@ - + @@ -208779,14 +208849,14 @@ UBERON:0002696 cuneiform nucleus - + - + NIFSTD @@ -208903,7 +208973,7 @@ - + DSOX BAMS:dsox BAMS:supd @@ -208930,14 +209000,14 @@ UBERON:0002697 dorsal supraoptic decussation - + - + NIFSTD @@ -209126,7 +209196,7 @@ - + SOH BAMS:soh BIRNLEX:1440 @@ -209143,7 +209213,7 @@ UBERON:0002699 supraopticohypophysial tract - + @@ -209156,7 +209226,7 @@ - + FMA NIFSTD @@ -209228,7 +209298,7 @@ - + SubCn BAMS:SubCn BIRNLEX:1441 @@ -209244,14 +209314,14 @@ UBERON:0002700 subcuneiform nucleus - + - + NIFSTD @@ -209294,7 +209364,7 @@ - + AM3 nucleus anteromedialis BAMS:AM3 @@ -209317,14 +209387,14 @@ UBERON:0002701 anterior median oculomotor nucleus - + - + NIFSTD @@ -209621,7 +209691,7 @@ - + The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted]. @@ -209652,14 +209722,14 @@ metathalamus http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + - + MA @@ -209744,7 +209814,7 @@ - + The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted]. BAMS:MNG BAMS:MTN @@ -209777,14 +209847,14 @@ midline nuclear group http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + - + ABA-label FMA MA @@ -209890,7 +209960,7 @@ - + The posterior nucleus of the hypothalamus is one of the many nuclei that make up the hypothalamic region of the brain. Its function is thermoregulation (heating) of the body. Damage or destruction of this nucleus causes hypothermia. @@ -209923,14 +209993,14 @@ UBERON:0002706 posterior nucleus of hypothalamus - + - + NIFSTD @@ -210042,7 +210112,7 @@ - + @@ -210093,7 +210163,7 @@ corticospinal tract http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png - + @@ -210106,7 +210176,7 @@ - + NIFSTD @@ -210199,7 +210269,7 @@ - + PPe BAMS:PPe BAMS:PVp @@ -210223,14 +210293,14 @@ UBERON:0002708 posterior periventricular nucleus - + - + NIFSTD @@ -210315,7 +210385,7 @@ - + Part of thalamus comprising ill defined cellular groups in the caudal thalamus at the meso-diencephalic junction. It is not a homogeneous structure but consists of several distinct cellular groups, including the suprageniculate and limitans nuclei, the magnocellular division of the medial geniculate body, portions of the pulvinar nucleus and an area of mixed cell types intercalated between the ventroposterior nucleus and the nucleus lateral posterior (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 97). ZFA grouping dubious @@ -210351,14 +210421,14 @@ posterior nuclear complex of thalamus - + - + FMA @@ -210718,7 +210788,7 @@ - + PMm BAMS:PM BAMS:PMm @@ -210735,7 +210805,7 @@ UBERON:0002712 premammillary nucleus - + @@ -210748,7 +210818,7 @@ - + FMA @@ -211305,7 +211375,7 @@ - + White matter tract arising in red nucleus and projecting to spinal cord ventral horn. BAMS:rs BAMS:rust @@ -211328,14 +211398,14 @@ http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg - + - + FMA NIF combined @@ -211533,7 +211603,7 @@ - + @@ -211561,14 +211631,14 @@ rostral interstitial nucleus of medial longitudinal fasciculus http://upload.wikimedia.org/wikipedia/commons/9/90/Gray710.png - + - + FMA NIF @@ -211725,7 +211795,7 @@ - + The spino-olivary tract is located in the ventral funiculus of the spinal cord. This tract carries proprioception information from muscles and tendons as well as cutaneous impulses to the olivary nucleus. [WP,unvetted]. BAMS:spo BIRNLEX:1484 @@ -211746,14 +211816,14 @@ spino-olivary tract - + - + Wikipedia @@ -211813,7 +211883,7 @@ - + White matter bundle in the posterior hypothalamus containing ascending afferent fibers to the mammillary bodies from the ventral and dorsal tegmental nuclei (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 671). MPE BAMS:mp @@ -211836,7 +211906,7 @@ UBERON:0002720 mammillary peduncle - + @@ -211849,7 +211919,7 @@ - + FMA @@ -211917,7 +211987,7 @@ - + A sulcus that divides the frontal lobe and parietal lobe above from the temporal lobe below. It is in both hemispheres of the brain but is longer in the left hemisphere. The lateral sulcus is one of the earliest-developing sulci of the human brain. It first appears around the fourteenth gestational week[WP,modified]. LS BAMS:lf @@ -211954,7 +212024,7 @@ lateral sulcus https://upload.wikimedia.org/wikipedia/commons/4/41/Lateral_sulcus2.png - + @@ -211967,7 +212037,7 @@ - + NIFSTD @@ -212282,7 +212352,7 @@ - + MPR BAMS:mpr BAMS:pm @@ -212302,7 +212372,7 @@ UBERON:0002723 mammillary princeps fasciculus - + @@ -212315,7 +212385,7 @@ - + FMA @@ -212611,7 +212681,7 @@ - + Thin sheet of white matter dividing the external and internal segments of the globus pallidus in primates. BAMS:mml @@ -212647,7 +212717,7 @@ UBERON:0002727 medial medullary lamina of globus pallidus - + @@ -212660,7 +212730,7 @@ - + FMA NIFSTD @@ -212824,15 +212894,15 @@ - - + + - + Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK). TODO - check area vs complex. MBA:909 this is part of the hippocampal formation via retrohippocampal region @@ -212873,34 +212943,34 @@ entorhinal cortex http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray-Brodman-Entorhinal_Cortex_EC_.png - + - + - + - + FMA - + BTO - + BTO @@ -212990,8 +213060,8 @@ - - + + BAMS:ClA BAMS:VCl BIRNLEX:1515 @@ -213009,24 +213079,24 @@ UBERON:0002729 claustral amygdaloid area - + - + - + FMA - + NIF @@ -213131,7 +213201,7 @@ - + Either of the two roots that come of the vestibulocochlear nerve. BAMS:8nf BIRNLEX:1519 @@ -213151,14 +213221,14 @@ UBERON:0002731 vestibulocochlear nerve root - + - + FMA @@ -213224,7 +213294,7 @@ - + BAMS:lfp BAMS:lp BIRNLEX:1523 @@ -213245,7 +213315,7 @@ UBERON:0002732 longitudinal pontine fibers - + @@ -213258,7 +213328,7 @@ - + NIFSTD @@ -213325,7 +213395,7 @@ - + The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]. @@ -213362,14 +213432,14 @@ intralaminar nuclear group http://upload.wikimedia.org/wikipedia/commons/b/ba/Thalmus.png - + - + FMA @@ -213586,7 +213656,7 @@ - + BAMS:tfp BAMS:tpf BIRNLEX:1535 @@ -213608,7 +213678,7 @@ UBERON:0002735 transverse pontine fibers - + @@ -213621,7 +213691,7 @@ - + NIFSTD @@ -213701,7 +213771,7 @@ - + The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted]. @@ -213743,7 +213813,7 @@ lateral nuclear group of thalamus http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + @@ -213756,7 +213826,7 @@ - + MA @@ -214037,8 +214107,8 @@ - - + + The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the Göttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted]. @@ -214094,24 +214164,24 @@ medial dorsal nucleus of thalamus http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + - + - + FMA - + Wikipedia @@ -214401,7 +214471,7 @@ - + A white fibre bundle descending in the precommissural septum toward the base of the forebrain, immediately rostral to the lamina terminalis; at the base, the bundle turns in the caudolateral direction; traveling through the ventral substantia innominata alongside the optic tract, it fades before reaching the amygdala. BAMS:db BIRNLEX:1551 @@ -214439,14 +214509,14 @@ diagonal band of Broca http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray724.png - + - + FMA @@ -214592,7 +214662,7 @@ - + @@ -214623,14 +214693,14 @@ lamina of septum pellucidum - + - + FMA @@ -214689,7 +214759,7 @@ - + A region of the brain consisting of ventral and rostral subcortical regions of the telencephalon, including among others, the basal ganglia, septal nuclei, amygdala, ventral pallidum, substantia innominata, and basal nucleus of Meynert. BAMS:Basal_forebrain @@ -214713,14 +214783,14 @@ basal forebrain http://upload.wikimedia.org/wikipedia/commons/a/a4/Basal_Forebrain_Monakhos_2007.png - + - + BTO @@ -214755,7 +214825,7 @@ - + The mouth of the flasklike dentate nucleus of the cerebellum, directed inward (rostromedial), and giving exit to many of the fibers that compose the superior cerebellar peduncle or brachium conjunctivum. BAMS:hdt BIRNLEX:1561 @@ -214770,7 +214840,7 @@ UBERON:0002744 hilum of dentate nucleus - + @@ -214783,7 +214853,7 @@ - + NIFSTD @@ -214830,7 +214900,7 @@ - + BAMS:vaf BIRNLEX:1563 FMA:61977 @@ -214843,7 +214913,7 @@ UBERON:0002745 ventral amygdalofugal projection - + @@ -214856,7 +214926,7 @@ - + FMA @@ -214899,7 +214969,7 @@ - + IPe BAMS:IPe BAMS:PVI @@ -214919,14 +214989,14 @@ UBERON:0002746 intermediate periventricular nucleus - + - + NIFSTD @@ -215057,8 +215127,8 @@ - - + + Part of medial lemniscus located within the medulla. BAMS:mlm BIRNLEX:1570 @@ -215072,11 +215142,11 @@ UBERON:0002748 medial lemniscus of medulla - + - + @@ -215089,14 +215159,14 @@ - + FMA NIFSTD - + NIFSTD @@ -215275,7 +215345,7 @@ - + Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the inferior temporal sulcus whereas the caudal boundary is designated as the temporo-occipital incisure on the cortical surface. The occipitotemporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine). BAMS:ITG @@ -215301,14 +215371,14 @@ inferior temporal gyrus http://upload.wikimedia.org/wikipedia/commons/3/35/Gray726.png - + - + Wikipedia @@ -215440,7 +215510,7 @@ - + It ascends the dorsal part of the lateral funiculus and enters the cerebellum via the restiform body. Within the cerebellum, its axons terminate in the ipsilateral hindlimb area of the anterior lobe and in the pyramis and the paramedian lobule predominantly ipsilaterally. Rostrally, it extends to lobules I and II. Afferents from the upper trunk, forelimbs, and the neck to the cerebellum. The dorsal spinocerebellar tract (posterior spinocerebellar tract, Flechsig's fasciculus, Flechsig's tract) conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the ventral spinocerebellar tract. Proprioceptive information is taken to the via central processes of dorsal root ganglia (first order neurons). These central processes travel through the dorsal horn where they synapse with second order neurons of Clarke's nucleus. Axon fibers from Clarke's Nucleus convey this proprioceptive information in the spinal cord in the peripheral region of the posteriolateral funiculus ipsilaterally until it reaches the cerebellum, where unconscious proprioceptive information is processed. This tract involves two neurons and ends up on the same side of the body. [WP,unvetted][Wikipedia:Dorsal_spinocerebellar_tract]. @@ -215467,14 +215537,14 @@ http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg - + - + Wikipedia @@ -215603,7 +215673,7 @@ - + @@ -215646,7 +215716,7 @@ pyramidal decussation http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png - + @@ -215659,7 +215729,7 @@ - + NIFSTD @@ -216275,8 +216345,8 @@ - - + + Part of pyramidal tract (corticospinal tract) containing uncrossed fibers and traveling in the ventral funiculus of the spinal cord. BAMS:vcsp BIRNLEX:1618 @@ -216312,24 +216382,24 @@ ventral corticospinal tract http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg - + - + - + NIFSTD - + modified part_of to overlaps NIFSTD @@ -216670,8 +216740,8 @@ - - + + Thin bundle of myelinated axons that divides the medial pallidal segment into outer and inner portions (Carpenter, Core Text of Neuroanatomy, 3rd ed., 1985, pg. 303). BAMS:aml @@ -216697,11 +216767,11 @@ UBERON:0002763 accessory medullary lamina of globus pallidus - + - + @@ -216714,13 +216784,13 @@ - + FMA - + NIFSTD @@ -216893,7 +216963,7 @@ - + The lateral medullary lamina is a thin white structure located in the basal ganglia of the primate brain. Bounded laterally by the putamen and medially by the globus pallidus, it is defined on the basis of Nissl or myelin stain ( Carpenter-1983 ). BAMS:lml BIRNLEX:1634 @@ -216930,7 +217000,7 @@ UBERON:0002765 lateral medullary lamina of globus pallidus - + @@ -216943,7 +217013,7 @@ - + FMA NIFSTD @@ -217288,8 +217358,8 @@ - - + + A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]. BAMS:vs BIRNLEX:1643 @@ -217314,11 +217384,11 @@ http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg - + - + @@ -217331,14 +217401,14 @@ - + weakened NIFSTD - + weakened NIFSTD @@ -217854,7 +217924,7 @@ - + A pathway that terminates on the hair cells of the cochlea or equivalent organ in the inner ear. BAMS:ocb BIRNLEX:1666 @@ -217873,7 +217943,7 @@ UBERON:0002775 olivocochlear bundle - + @@ -217886,7 +217956,7 @@ - + FMA @@ -217946,7 +218016,7 @@ - + Nuclei in the ventral part of the thalamus, involved in modulating activity of dorsal thalamic nuclei. @@ -217983,14 +218053,14 @@ ventral nuclear group http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + - + FMA @@ -218131,8 +218201,8 @@ - - + + Part of the globus pallidus, consisting of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM). BAMS:PALv BIRNLEX:1674 @@ -218152,11 +218222,11 @@ UBERON:0002778 ventral pallidum - + - + @@ -218169,14 +218239,14 @@ - + BTO NIF-def - + NIFSTD @@ -218229,7 +218299,7 @@ - + One of two recognized nuclei comprising the superior olive. The lateral superior olivary nucleus is much less prominent in humans than in many rodents and carnivores. In the latter species, it is frequently described as S- or V-shaped. BAMS:IOda @@ -218261,14 +218331,14 @@ lateral superior olivary nucleus http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray679.png - + - + NIFSTD @@ -218392,7 +218462,7 @@ - + VPLC BAMS:VPLC BAMS:VPLp @@ -218416,14 +218486,14 @@ UBERON:0002781 caudal part of ventral posterolateral nucleus of thalamus - + - + NIFSTD @@ -218518,8 +218588,8 @@ - - + + One of two subnuclei of the superior olive located within the caudal pontine tegmentum. Appears as a parasagittal row of transversely oriented bipolar neurons in transverse sections of human, with elongated somata in humans and other primates and large caliber dendrites. BAMS:MSO BIRNLEX:1682 @@ -218553,24 +218623,24 @@ medial superior olivary nucleus http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png - + - + - + NIFSTD - + NIFSTD @@ -218672,7 +218742,7 @@ - + @@ -218690,7 +218760,7 @@ UBERON:0002783 central tegmental tract of pons - + @@ -218703,7 +218773,7 @@ - + FMA @@ -218813,7 +218883,7 @@ - + Nerve fibers arising from motor neurons in the abducens nucleus that are contained within the pontine tegmentum. BAMS:6n BAMS:6nf @@ -218835,7 +218905,7 @@ UBERON:0002786 root of abducens nerve - + @@ -218848,7 +218918,7 @@ - + ZFA-abduced @@ -218929,7 +218999,7 @@ - + The crossing of the two trochlear nerves at their exit through the velum medullare anterius. BAMS:4x BAMS:IVd @@ -218952,14 +219022,14 @@ UBERON:0002787 decussation of trochlear nerve - + - + FMA @@ -219044,7 +219114,7 @@ - + Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26). ANG @@ -219095,14 +219165,14 @@ anterior nuclear group http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + - + MA @@ -219301,7 +219371,7 @@ - + White matter structure containing fibers arising from the cochlear nuclear complex. BAMS:das @@ -219319,7 +219389,7 @@ UBERON:0002790 dorsal acoustic stria - + @@ -219332,7 +219402,7 @@ - + FMA @@ -219539,7 +219609,7 @@ - + Part of dorsal longitudinal fasciculus located within the pons. BAMS:dlfp BIRNLEX:1707 @@ -219552,7 +219622,7 @@ UBERON:0002793 dorsal longitudinal fasciculus of pons - + @@ -219565,7 +219635,7 @@ - + NIFSTD @@ -219764,7 +219834,7 @@ - + TODO - check ZFA BAMS:m5 BAMS:mV @@ -219798,14 +219868,14 @@ UBERON:0002796 motor root of trigeminal nerve - + - + Wikipedia @@ -219920,7 +219990,7 @@ - + The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted]. BAMS:d5 BAMS:tth @@ -219952,14 +220022,14 @@ This tract arises from Principal trigeminal nucleus and terminates in the ipsilateral VPM nucleus of the thalamus.[WP] dorsal trigeminal tract - + - + FMA NIFSTD @@ -220076,7 +220146,7 @@ - + @@ -220105,7 +220175,7 @@ UBERON:0002798 spinothalamic tract of pons - + @@ -220118,7 +220188,7 @@ - + FMA @@ -220287,7 +220357,7 @@ - + BAMS:sp5p BIRNLEX:1725 FMA:72507 @@ -220300,14 +220370,14 @@ UBERON:0002800 spinal trigeminal tract of pons - + - + NIFSTD @@ -220342,7 +220412,7 @@ - + The thalamus consists chiefly of gray substance, but its upper surface is covered by a layer of white substance, named the stratum zonale. BAMS:SZ BIRNLEX:1727 @@ -220358,14 +220428,14 @@ UBERON:0002801 stratum zonale of thalamus - + - + NIFSTD @@ -221344,7 +221414,7 @@ - + The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]. BIRNLEX:2523 BIRNLEX:2555 @@ -221366,14 +221436,14 @@ apex of cochlea - + - + Wikipedia @@ -221816,10 +221886,10 @@ - - - - + + + + The group of neuron cell bodies associated with the eighth cranial nerve during embryogenesis; splits in later development to form the cochlear and vestibular ganglia. Consider follow MA naming scheme. The sensory ganglion of the ear. (See Anatomical Atlas entry for statoacoustic ganglion by T. Whitfield.)[TAO] @@ -221862,19 +221932,19 @@ vestibulocochlear ganglion - + - + - + - + @@ -221887,25 +221957,25 @@ - + ZFA - + NCBIBook:NBK53175 - + ZFA - + EHDAA2 @@ -222052,7 +222122,7 @@ - + The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted]. VCo @@ -222084,14 +222154,14 @@ ventral cochlear nucleus http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png - + - + NIFSTD @@ -222196,7 +222266,7 @@ - + The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]. DCo BAMS:DC @@ -222228,14 +222298,14 @@ dorsal cochlear nucleus http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png - + - + NIFSTD @@ -222316,7 +222386,7 @@ - + AVCo BAMS:AVCo @@ -222338,14 +222408,14 @@ UBERON:0002830 anteroventral cochlear nucleus - + - + NIFSTD @@ -222430,7 +222500,7 @@ - + PVCo BAMS:PVCo BIRNLEX:2573 @@ -222449,14 +222519,14 @@ UBERON:0002831 posteroventral cochlear nucleus - + - + NIFSTD @@ -222529,7 +222599,7 @@ - + @@ -222553,14 +222623,14 @@ UBERON:0002832 ventral nucleus of trapezoid body - + - + Wikipedia @@ -222621,7 +222691,7 @@ - + Nucleus in the pontine tegmentum of most mammals that receives projections from the ventral cochlear nucleus via the large specialized synapse, the Calyx of Held. It is not clear whether a well defined nucleus is present in humans, although humans may possess scattered cells with similar input. BIRNLEX:2595 @@ -222632,14 +222702,14 @@ UBERON:0002833 medial nucleus of trapezoid body - + - + Wikipedia @@ -223891,7 +223961,7 @@ - + The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]. @@ -223932,14 +224002,14 @@ accessory cuneate nucleus http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png - + - + NIFSTD @@ -224498,7 +224568,7 @@ - + CGM BAMS:CGM BIRNLEX:2638 @@ -224516,14 +224586,14 @@ UBERON:0002867 central gray substance of medulla - + - + FMA @@ -224584,7 +224654,7 @@ - + Cm10 BAMS:Cm10 BIRNLEX:2639 @@ -224601,7 +224671,7 @@ UBERON:0002868 commissural nucleus of vagus nerve - + @@ -224614,7 +224684,7 @@ - + NIFSTD @@ -224682,7 +224752,7 @@ - + DRt BAMS:DRt BAMS:KF @@ -224711,14 +224781,14 @@ UBERON:0002869 diffuse reticular nucleus - + - + NIFSTD @@ -224810,8 +224880,8 @@ - - + + A cranial nerve nucleus for the vagus nerve in the medulla that lies under the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. The cell bodies for the preganglionic parasympathetic vagal neurons that innervate the heart reside in the nucleus ambiguus.[WP,unvetted]. @@ -224869,25 +224939,25 @@ dorsal motor nucleus of vagus nerve http://upload.wikimedia.org/wikipedia/commons/8/82/Gray697.png - + - + - + MA NIF - + definitional @@ -225304,8 +225374,8 @@ - - + + @@ -225345,24 +225415,24 @@ inferior salivatory nucleus http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray843.png - + - + - + NIFSTD - + definitional @@ -225624,7 +225694,7 @@ - + LPCu BAMS:LPCu @@ -225639,14 +225709,14 @@ UBERON:0002874 lateral pericuneate nucleus - + - + NIFSTD @@ -225689,7 +225759,7 @@ - + MPCu BAMS:MPCu BIRNLEX:2648 @@ -225703,14 +225773,14 @@ UBERON:0002875 medial pericuneate nucleus - + - + NIFSTD @@ -225747,7 +225817,7 @@ - + UBERON:0002878 In BAMS:In @@ -225776,14 +225846,14 @@ two NIF classes with the same name nucleus intercalatus - + - + NIFSTD @@ -225860,7 +225930,7 @@ - + @@ -225885,14 +225955,14 @@ UBERON:0002877 parasolitary nucleus - + - + NIFSTD @@ -225992,7 +226062,7 @@ - + Pe5 BAMS:Pe5 BIRNLEX:2655 @@ -226006,14 +226076,14 @@ UBERON:0002879 peritrigeminal nucleus - + - + NIFSTD @@ -226050,7 +226120,7 @@ - + PnB BAMS:PnB BIRNLEX:2656 @@ -226067,14 +226137,14 @@ UBERON:0002880 pontobulbar nucleus - + - + NIFSTD @@ -226130,7 +226200,7 @@ - + In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]. SLg @@ -226158,14 +226228,14 @@ sublingual nucleus - + - + NIFSTD @@ -226247,7 +226317,7 @@ - + SSp BIRNLEX:2658 BM:SSp @@ -226264,14 +226334,14 @@ UBERON:0002882 supraspinal nucleus - + - + NIFSTD @@ -226620,7 +226690,7 @@ - + BAMS:ABA BAMS:BAM BIRNLEX:2686 @@ -226646,14 +226716,14 @@ UBERON:0002885 accessory basal amygdaloid nucleus - + - + NIFSTD @@ -226763,7 +226833,7 @@ - + The sensory interface of the amygdala where plasticity is mediated (Phelps & LeDoux, 2005, http://www.ncbi.nlm.nih.gov/pubmed/ 16242399). BAMS:ALA @@ -226795,14 +226865,14 @@ UBERON:0002886 lateral amygdaloid nucleus - + - + NIFSTD @@ -226892,7 +226962,7 @@ - + BAMS:ABL BAMS:BL @@ -226922,14 +226992,14 @@ UBERON:0002887 basal amygdaloid nucleus - + - + NIFSTD @@ -227285,7 +227355,7 @@ - + BAMS:AA BAMS:AAA BIRNLEX:2698 @@ -227310,14 +227380,14 @@ UBERON:0002890 anterior amygdaloid area - + - + NIFSTD @@ -227384,7 +227454,7 @@ - + Three layered structure that is located in the caudal aspect of the amygdala bordering the periamygdaloid cortex laterally. BAMS:ACOP @@ -227415,14 +227485,14 @@ UBERON:0002891 cortical amygdaloid nucleus - + - + NIFSTD @@ -227531,7 +227601,7 @@ - + BAMS:MEA BAMS:Me BIRNLEX:2701 @@ -227557,14 +227627,14 @@ UBERON:0002892 medial amygdaloid nucleus - + - + NIFSTD @@ -227758,8 +227828,8 @@ - - + + @@ -227795,24 +227865,24 @@ olfactory cortex - + - + - + VHOG - + MA @@ -227880,8 +227950,8 @@ - - + + Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed). FMA considers this a syn of entorhinal cortex. See also brodman definition BAMS:Ent @@ -227900,24 +227970,24 @@ secondary olfactory cortex - + - + - + FMA - + NIF @@ -228283,7 +228353,7 @@ - + The transverse occipital sulcus is a structure in the occipital lobe. The transverse occipital sulcus is continuous with the posterior end of the occipital ramus of the intraparietal sulcus, and runs across the upper part of the lobe, a short distance behind the parietoC6ccipital fissure. TOCS BAMS:tocs @@ -228300,14 +228370,14 @@ UBERON:0002900 transverse occipital sulcus - + - + NIFSTD @@ -228349,7 +228419,7 @@ - + PCCS BAMS:pccs BIRNLEX:4015 @@ -228365,14 +228435,14 @@ UBERON:0002901 posterior calcarine sulcus - + - + NIFSTD @@ -228436,7 +228506,7 @@ - + The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]. OCP @@ -228461,14 +228531,14 @@ occipital pole http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG - + - + BTO @@ -228517,7 +228587,7 @@ - + The lunate sulcus is a structure in the occipital lobe. It is not present in all individuals. LUS BAMS:lus @@ -228537,7 +228607,7 @@ UBERON:0002903 lunate sulcus - + @@ -228550,7 +228620,7 @@ - + NIFSTD @@ -228677,7 +228747,7 @@ - + A groove located within the boundaries of the lingual gyrus in the human. Identified by dissection, it is oriented parallel to the inferior margin of the occipital lobe ( Ono-1990; Duvernoy-1992 ). It is not found in the macaque or in the smooth cerebral cortex of the rat or mouse ( NeuroNames ) ILS @@ -228692,7 +228762,7 @@ UBERON:0002905 intralingual sulcus - + @@ -228705,7 +228775,7 @@ - + cjm @@ -228747,7 +228817,7 @@ - + AOCS BAMS:aocs BIRNLEX:4023 @@ -228765,7 +228835,7 @@ UBERON:0002906 anterior occipital sulcus - + @@ -228778,7 +228848,7 @@ - + NIFSTD @@ -229009,7 +229079,7 @@ - + One of two branches of the lateral fissure at its posterior terminus identified by dissection in the human. The other is the terminal descending limb of the lateral fissure ( Ono-1990 ). It is not found in the macaque ( Martin-2000 ), the rat ( Swanson-2004 ) or the mouse ( Hof-2000 ). PALS BAMS:pals @@ -229029,7 +229099,7 @@ UBERON:0002910 posterior ascending limb of lateral sulcus - + @@ -229042,7 +229112,7 @@ - + NIFSTD @@ -229196,7 +229266,7 @@ - + The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted]. MS BIRNLEX:4030 @@ -229218,7 +229288,7 @@ marginal sulcus http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray727_marginal_sulcus.svg - + @@ -229231,7 +229301,7 @@ - + FMA @@ -229478,7 +229548,7 @@ - + The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]. POCS BAMS:pocs @@ -229505,14 +229575,14 @@ postcentral sulcus of parietal lobe https://upload.wikimedia.org/wikipedia/commons/6/6c/Postcentral_sulcus.png - + - + cjm @@ -229606,7 +229676,7 @@ - + The central sulcus is a fold in the cerebral cortex of brains in vertebrates. Also called the central fissure, it was originally called the fissure of Rolando or the Rolandic fissure, after Luigi Rolando. The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [WP,unvetted]. CS BAMS:cs @@ -229637,14 +229707,14 @@ http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray726_central_sulcus.svg https://upload.wikimedia.org/wikipedia/commons/b/b6/Central_sulcus.png - + - + NIFSTD @@ -229760,7 +229830,7 @@ - + The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]. BAMS:MPB @@ -229781,14 +229851,14 @@ medial parabrachial nucleus - + - + FMA @@ -230136,7 +230206,7 @@ - + A small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract (adapted from Wikipedia). OLT BAMS:OTr @@ -230156,14 +230226,14 @@ olfactory trigone http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png - + - + BTO-def @@ -230267,8 +230337,8 @@ - - + + The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. Whitlock 2004. Also see Grens, Greenwood and Fernald, Brain Behav Evol 2005; 66(1):1-9.[TAO] TRN @@ -230295,11 +230365,11 @@ http://www.ncbi.nlm.nih.gov/pubmed/2286018 state: 'The presence of an additional cranial nerve (the nervus terminalis or cranial nerve zero) is well documented in many non-human vertebrate species. However, its existence in the adult human has been disputed. The present study focused on the structure and incidence of this nerve in the adult human brain. The nerve was examined post-mortem in 10 adult brains using dissection microscopy, light microscopy, transmission electron microscopy, and immunohistochemistry. In all specimens, the nervus terminalis was identified bilaterally as a microscopic plexus of unmyelinated peripheral nerve fascicles in the subarachnoid space covering the gyrus rectus of the orbital surface of the frontal lobes. The plexus appeared in the region of the cribriform plate of the ethmoid and coursed posteriorly to the vicinity of the olfactory trigone, medial olfactory gyrus, and lamina terminalis. We conclude that the terminal nerve is a common finding in the adult human brain, confirming early light microscopic reports.' terminal nerve - + - + @@ -230312,13 +230382,13 @@ - + ISBN:0471888893 - + ISBN:0471888893 @@ -230530,7 +230600,7 @@ - + A sensory epithelium that is part of a gustatory system. FMA:62412 http://uri.neuinfo.org/nif/nifstd/nifext_12 @@ -230538,14 +230608,14 @@ UBERON:0002926 gustatory epithelium - + - + NIFSTD @@ -230650,7 +230720,7 @@ - + BIRNLEX:701 DHBA:12364 FMA:72505 @@ -230665,7 +230735,7 @@ UBERON:0002930 tectopontine tract - + @@ -230678,7 +230748,7 @@ - + FMA @@ -230727,7 +230797,7 @@ - + BAMS:DS BIRNLEX:704 FMA:61877 @@ -230739,14 +230809,14 @@ UBERON:0002931 dorsal septal nucleus - + - + NIFSTD @@ -230782,7 +230852,7 @@ - + Bundles of axons traversing the pontine tegmentum oriented in the mediolateral direction. These fibers are related to the auditory pathway. Nuclei are embedded within these fibers. TZ BAMS:TB @@ -230808,14 +230878,14 @@ trapezoid body http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png - + - + FMA @@ -230978,7 +231048,7 @@ - + V3 BIRNLEX:713 DHBA:12205 @@ -230994,14 +231064,14 @@ UBERON:0002934 ventral oculomotor nucleus - + - + NIFSTD @@ -231057,7 +231127,7 @@ - + VAMC BAMS:VAMC BIRNLEX:716 @@ -231085,14 +231155,14 @@ UBERON:0002935 magnocellular part of ventral anterior nucleus - + - + FMA @@ -231334,7 +231404,7 @@ - + VAPC BAMS:VAPC BIRNLEX:722 @@ -231353,14 +231423,14 @@ UBERON:0002937 parvocellular part of ventral anterior nucleus - + - + FMA @@ -231558,7 +231628,7 @@ - + BAMS:VP BAMS:VPI BIRNLEX:728 @@ -231595,14 +231665,14 @@ UBERON:0002939 ventral posteroinferior nucleus - + - + FMA @@ -231717,7 +231787,7 @@ - + BAMS:afx @@ -231734,14 +231804,14 @@ UBERON:0002940 anterior column of fornix - + - + NIFSTD @@ -231871,7 +231941,7 @@ - + The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted]. VPL @@ -231912,14 +231982,14 @@ ventral posterolateral nucleus http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + - + FMA NIF @@ -232065,7 +232135,7 @@ - + Component of the occipital lobe. The rostral boundary of the lingual gyrus was the posterior extent of the parahippocampal gyrus whereas the caudal boundary was the most posterior coronal slice where the gyrus could be visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the medial bank of the collateral sulcus respectively (Christine Fennema-Notestine). BAMS:LgG @@ -232092,7 +232162,7 @@ lingual gyrus http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray727_lingual_gyrus.png - + @@ -232105,7 +232175,7 @@ - + FMA @@ -232172,14 +232242,14 @@ - + - + Part of spinothalamic tract that is in the medulla. spinothalamic tract BAMS:stm @@ -232198,11 +232268,11 @@ spinothalamic tract of medulla http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg - + - + @@ -232215,13 +232285,13 @@ - + FMA - + GO @@ -232269,7 +232339,7 @@ - + The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted]. VPM @@ -232321,7 +232391,7 @@ ventral posteromedial nucleus of thalamus http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png - + @@ -232334,7 +232404,7 @@ - + FMA @@ -232686,8 +232756,8 @@ - - + + A long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]. NIF and FMA differ in placement (spinal cord vs medulla) BAMS:ts @@ -232714,11 +232784,11 @@ tectospinal tract http://upload.wikimedia.org/wikipedia/commons/b/be/Gray670.png - + - + @@ -232731,14 +232801,14 @@ - + weakened FMA - + weakened NIFSTD @@ -232882,7 +232952,7 @@ - + White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609). BAMS:ias BIRNLEX:768 @@ -232899,7 +232969,7 @@ UBERON:0002952 intermediate acoustic stria - + @@ -232912,7 +232982,7 @@ - + FMA NIF @@ -233051,7 +233121,7 @@ - + A relatively small region of the hypothalamus located inferior to the hypothalamic sulcus. Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain[ZFA:0000347, ISBN:3764351209, ZFA:curator]. In humans it contains the following nuclei: portions of the dorsomedial nucleus [TA] (nucleus dorsomedialis [TA]), endopeduncular nucleus [TA]) (nucleus endopeduncularis [TA]), and portions of the nucleus of the ansa lenticularis (nucleus ansae lenticularis @@ -233075,14 +233145,14 @@ ). dorsal hypothalamic area - + - + NIFSTD @@ -233157,7 +233227,7 @@ - + @@ -233185,14 +233255,14 @@ UBERON:0002955 rhomboidal nucleus - + - + NIFSTD @@ -233412,7 +233482,7 @@ - + CC3 BAMS:CC3 BIRNLEX:780 @@ -233430,14 +233500,14 @@ UBERON:0002957 caudal central oculomotor nucleus - + - + NIFSTD @@ -233487,8 +233557,8 @@ - - + + Part of medial lemniscus located within the pons. BAMS:mlp BIRNLEX:781 @@ -233506,11 +233576,11 @@ UBERON:0002958 medial lemniscus of pons - + - + @@ -233523,14 +233593,14 @@ - + FMA NIFSTD - + FMA @@ -233595,7 +233665,7 @@ - + SF BAMS:SF BIRNLEX:783 @@ -233607,14 +233677,14 @@ UBERON:0002959 subfascicular nucleus - + - + NIFSTD @@ -233651,7 +233721,7 @@ - + C3 BIRNLEX:786 DHBA:12201 @@ -233668,14 +233738,14 @@ UBERON:0002960 central oculomotor nucleus - + - + NIFSTD @@ -233724,8 +233794,8 @@ - - + + A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate. BAMS:ACx BIRNLEX:787 @@ -233744,11 +233814,11 @@ archicortex - + - + @@ -233761,13 +233831,13 @@ - + FMA - + Wikipedia @@ -233807,10 +233877,10 @@ - - - - + + + + A muscle in the manus that functions to adduct the thumb. It has two heads: transverse and oblique. It is a fleshy, flat, triangular, and fan-shaped muscle deep in the thenar compartment beneath the long flexor tendons and the lumbrical muscles at the center of the palm. It overlies the metacarpal bones and the interosseous muscles[WP]. EMAPA:36213 @@ -233826,46 +233896,46 @@ adductor pollicis muscle http://upload.wikimedia.org/wikipedia/commons/d/df/Musculusadductorpollicis.png - + - + - + - + - + medial side of the base of the proximal phalanx of the thumb and the ulnar sesamoid dbpedia - + medial side of the base of the proximal phalanx of the thumb and the ulnar sesamoid dbpedia - + dbpedia - + dbpedia @@ -233900,7 +233970,7 @@ - + The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep. @@ -233928,14 +233998,14 @@ caudal pontine reticular nucleus - + - + FMA @@ -234025,7 +234095,7 @@ - + D3 BAMS:D3 BIRNLEX:793 @@ -234041,14 +234111,14 @@ UBERON:0002964 dorsal oculomotor nucleus - + - + NIFSTD @@ -234097,7 +234167,7 @@ - + RIL BAMS:RIL @@ -234116,7 +234186,7 @@ UBERON:0002965 rostral intralaminar nuclear group - + @@ -234129,7 +234199,7 @@ - + FMA @@ -234344,7 +234414,7 @@ - + @@ -234370,14 +234440,14 @@ UBERON:0002968 central gray substance of pons - + - + FMA @@ -234568,7 +234638,7 @@ - + I3 BAMS:I3 BIRNLEX:803 @@ -234585,14 +234655,14 @@ UBERON:0002970 intermediate oculomotor nucleus - + - + NIFSTD @@ -234747,7 +234817,7 @@ - + In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted]. CMn BAMS:CM @@ -234785,14 +234855,14 @@ centromedian nucleus of thalamus - + - + FMA @@ -234931,11 +235001,11 @@ - - - - - + + + + + Component of the temporal lobe on the mesial surface, posterior to the entorhinal cortex. The rostral and caudal boundaries are the posterior end of the netorhinal cortex and the caudal portion of the hippocampus, respectively. The medial boudnary is designated as the medial aspect off the temporal lobe and the lateral boundary is the collateral sulcus (Christine Fennema-Notestine). BAMS:PHG @@ -234965,55 +235035,55 @@ parahippocampal gyrus http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG - + - + - + - + - + - + FMA - + FMA - + FMA NIF - + Wikipedia - + Wikipedia @@ -235188,7 +235258,7 @@ - + M3 BAMS:M3 BIRNLEX:813 @@ -235204,14 +235274,14 @@ UBERON:0002975 medial oculomotor nucleus - + - + NIFSTD @@ -235311,7 +235381,7 @@ - + BAMS:STN BAMS:TRS @@ -235333,14 +235403,14 @@ UBERON:0002977 triangular septal nucleus - + - + NIFSTD @@ -235653,7 +235723,7 @@ - + Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus. inferior frontal gyrus, pars opercularis @@ -235678,14 +235748,14 @@ opercular part of inferior frontal gyrus - + - + FMA @@ -235767,7 +235837,7 @@ - + One of a set of nuclei located in the posterior thalamus, that projects to all or nearly all extra-striate visual areas. Pul BAMS:PUL @@ -235799,7 +235869,7 @@ pulvinar nucleus http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png - + @@ -235812,7 +235882,7 @@ - + FMA @@ -235975,7 +236045,7 @@ - + The lateral posterior nucleus is a nucleus of the thalamus. It acts in concert with the pulvinar. @@ -236011,14 +236081,14 @@ UBERON:0002983 lateral posterior nucleus of thalamus - + - + NIFSTD @@ -236139,7 +236209,7 @@ - + The lateral dorsal nucleus is a nucleus of the thalamus. It acts in concert with the anterior nuclei of thalamus. It receives significant input from several subdivisions of visual cortex, and has a primary output to parietal cortex on the dorsolateral cortical convexity, giving it access to limbic forebrain nuclei important for emotion and behavior functions. @@ -236180,14 +236250,14 @@ UBERON:0002984 lateral dorsal nucleus - + - + NIFSTD @@ -236560,14 +236630,14 @@ - + - + Runs through the ventrolateral surface of the spinal cord. It enters the cerebellum through the superior cerebellar peduncle. It crosses the midline at the segmental level and recrosses in the cerebellum. Its terminals are distributed in the cerebellar anterior lobe, preferentially in the ipsilateral intermediate cortex. Rostrally, it extends to lobule II. The ventral spinocerebellar tract conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the dorsal spinocerebellar tract. Both these tracts involve two neurons and end up on the same side of the body. The ventral tract (under L2/L3) gets its proprioceptive/fine touch/vibration information from a first order neuron, with its cell body in a dorsal ganglion. The axon runs via the fila radicularia to the dorsal horn of the grey matter. There it makes a synapse with the dendrites of two neurons: they send their axons bilaterally to the ventral border of the lateral funiculi. The ventral spinocerebellar tract then enters the cerebellum via the superior cerebellar peduncle. This is in contrast with the dorsal spinocerebellar tract (C8 - L2/L3), which only has 1 unilateral axon that has its cell body in the Clarke's nuclei (only at the level of C8 - L2/L3). The fibers of the ventral spinocerebellar tract then eventually enter the cerebellum via the superior cerebellar peduncle. This is one of the few afferent tracts through the superior cerebellar peduncle. Originates from ventral horn at lumbosacral spinal levels. Axons first cross midline in the spinal cord and run in the ventral border of the lateral funiculi. These axons ascend up to the pons where they join the superior cerebellar peduncle to enter the cerebellum. Once in the deep white matter of the cerebellum, the axons recross the midline, give off collaterals to the globose and emboliform nuclei, and terminate in the cortex of the anterior lobe and vermis of the posterior lobe. [WP,unvetted][Wikipedia:Ventral_spinocerebellar_tract]. BAMS:asc @@ -236595,24 +236665,24 @@ http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg http://upload.wikimedia.org/wikipedia/commons/f/fe/Medulla_spinalis_-_tracts_-_English.svg - + - + - + FMA - + Wikipedia @@ -236725,9 +236795,9 @@ - - - + + + A small muscle on the posterior aspect of the elbow joint. AAO:0010714 @@ -236747,15 +236817,15 @@ anconeus muscle http://upload.wikimedia.org/wikipedia/commons/7/77/Gray1232.png - + - + - + @@ -236768,20 +236838,20 @@ - + dbpedia - + lateral epicondyle of the humerus proximally dbpedia - + lateral surface of the olecranon process and the superior part of the posterior ulna distally dbpedia @@ -236830,7 +236900,7 @@ - + @@ -236854,14 +236924,14 @@ mammillothalamic tract of hypothalamus - + - + FMA @@ -236922,7 +236992,7 @@ - + SUMX BAMS:smd BAMS:sumx @@ -236945,7 +237015,7 @@ UBERON:0002991 supramammillary commissure - + @@ -236958,7 +237028,7 @@ - + FMA @@ -237041,7 +237111,7 @@ - + One of the median nuclei of the thalamus, situated ventral and medial to the stria medullaris. PT @@ -237069,14 +237139,14 @@ UBERON:0002992 paratenial nucleus - + - + ABA FMA NIF @@ -237180,7 +237250,7 @@ - + TODO - compare with UBERON:0002881 ! sublingual nucleus; also to dorsal raphe nucleus. Check if the same as ZFA 'inferior raphe nucleus'. See comments on https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855 BIRNLEX:861 FMA:72466 @@ -237195,7 +237265,7 @@ inferior central nucleus - + @@ -237208,7 +237278,7 @@ - + FMA @@ -237262,7 +237332,7 @@ - + @@ -237296,14 +237366,14 @@ UBERON:0002995 substantia nigra pars lateralis - + - + MA @@ -237442,7 +237512,7 @@ - + Predominantly gray matter structure consisting of large multipoloar cells lying aong axons of the brachium of the superior colliculus, lyaing adjaent to the dorsal terminal nucleus of the accessory optic system. In several species, cells of this nucleus receive input from the contralateral retina (Sefton and Dreher in Paxinos, G. The rat nervous system, 1995, pg. 862). @@ -237465,7 +237535,7 @@ UBERON:0002996 nucleus of optic tract - + @@ -237478,7 +237548,7 @@ - + ISBN:0471888893 @@ -237693,7 +237763,7 @@ - + The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted]. BAMS:PRNr BAMS:PnO @@ -237713,7 +237783,7 @@ oral pontine reticular nucleus - + @@ -237726,7 +237796,7 @@ - + FMA @@ -237951,8 +238021,8 @@ - - + + The median raphe nucleus (or superior central nucleus) is composed of polygonal, fusiform and pyriform neurons and exists rostral to the nucleus raphe pontis. One trait of the MRN is its inhibition by lysergic acid diethylamide and psilocin, two serotonin antagonist hallucinogens. The inactivation of the nucleus centralis superior via LSD produces a dose dependent inactivation in the MRN, but not in the raphe pallidus[WP,unvetted]. TODO - The term medial raphe nucleus refers to a composite structure that consists of the superior central nucleus and the inferior central nucleus of the pontine reticular formation ( Carpenter-1983 ) @@ -237982,24 +238052,24 @@ median raphe nucleus - + - + - + Wikipedia - + Wikipedia @@ -238085,8 +238155,8 @@ - - + + Part of dorsal longitudinal fasciculus located in the midbrain tegmentum. DLFMB BAMS:dlfmb @@ -238107,11 +238177,11 @@ UBERON:0003005 dorsal longitudinal fasciculus of midbrain - + - + @@ -238124,13 +238194,13 @@ - + FMA - + NIFSTD @@ -238308,7 +238378,7 @@ - + The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]. BAMS:LPB BIRNLEX:897 @@ -238327,14 +238397,14 @@ lateral parabrachial nucleus - + - + FMA @@ -238375,8 +238445,8 @@ - - + + Part of dorsal longitudinal fasciculus located within the hypothalamus. classified as tract in FMA DLFH @@ -238391,24 +238461,24 @@ UBERON:0003008 dorsal longitudinal fasciculus of hypothalamus - + - + - + FMA - + NIFSTD @@ -238463,7 +238533,7 @@ - + DTGX BAMS:dtd BAMS:dtgx @@ -238489,7 +238559,7 @@ UBERON:0003009 dorsal tegmental decussation - + @@ -238502,7 +238572,7 @@ - + FMA @@ -238606,7 +238676,7 @@ - + LPL BAMS:lpl BIRNLEX:902 @@ -238626,7 +238696,7 @@ UBERON:0003010 lateral pes lemniscus - + @@ -238639,7 +238709,7 @@ - + FMA @@ -238914,7 +238984,7 @@ - + @@ -238947,14 +239017,14 @@ flocculonodular lobe http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png - + - + Wikipedia @@ -239249,8 +239319,8 @@ - - + + A predominantly gray matter structure of the basal telencephalon defined on the basis of Nissl stain. Caudal to the anterior commissure it lies deep to the globus pallidus and dorsal to the amygdala. Rostral to the anterior commissure it lies deep to the striatum. The more rostral portion contains the basal forebrain nucleus ( Anthoney-1994 ). In the late twentieth century the region containing the substantia innominata was resegmented on the basis of neurochemistry and connectivity to constitute the striatopallidal system ( Heimer-1995 ). In this scheme the caudal portion of substantia innominata is located largely in the ventral pallidum and the rostral portion in the ventral striatum. (from Brain Info). @@ -239282,24 +239352,24 @@ substantia innominata http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG - + - + - + WP - + ABA @@ -239382,7 +239452,7 @@ - + VPMPC BAMS:Gus BAMS:VPMPC @@ -239416,14 +239486,14 @@ UBERON:0003018 parvocellular part of ventral posteromedial nucleus - + - + NIFSTD @@ -239564,7 +239634,7 @@ - + VPLO BAMS:VIM BAMS:VPLO @@ -239588,14 +239658,14 @@ UBERON:0003019 oral part of ventral posterolateral nucleus - + - + NIFSTD @@ -239691,7 +239761,7 @@ - + The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted]. @@ -239716,14 +239786,14 @@ subcallosal area http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png - + - + NIFSTD @@ -239803,7 +239873,7 @@ - + The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted]. Note in FMA this is classified as a hemispheric lobule, which leads to inconsistencies. In ABA it is vermic, and FMA actually places it in the anterior vermis. @@ -239827,14 +239897,14 @@ central lobule http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray703.png - + - + FMA @@ -240043,7 +240113,7 @@ - + VPMPr BAMS:VPMPr BIRNLEX:927 @@ -240058,14 +240128,14 @@ UBERON:0003024 principal part of ventral posteromedial nucleus - + - + NIFSTD @@ -240325,7 +240395,7 @@ - + The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted]. BIRNLEX:934 BM:Tel-Cx-Cg @@ -240348,14 +240418,14 @@ cingulate cortex http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray727_cingulate_gyrus.png - + - + NIFSTD cjm @@ -240559,7 +240629,7 @@ - + White matter structure in the brain consisting of fibers running along the lateral margin of the ventricular surface of the thalamus. The stria terminalis covers the thalamostriate vein, marking a line of separation between the thalamus and the caudate nucleus as seen upon gross dissection of the ventricles of the brain, viewed from the superior aspect. The stria terminalis extends from the region of the interventricular foramen to the temporal horn of the lateral ventricle, carrying fibers from the amygdala to the septal, hypothalamic, and thalamic areas of the brain. It also carries fibers projecting from these areas back to the amygdala. (Wikipedia:Stria_terminalis). BAMS:STR BAMS:st @@ -240589,14 +240659,14 @@ stria terminalis http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray683.png - + - + FMA @@ -240691,7 +240761,7 @@ - + PTh BAMS:PTh BIRNLEX:939 @@ -240714,14 +240784,14 @@ posterior nucleus of thalamus - + - + FMA NIFSTD @@ -240779,7 +240849,7 @@ - + Thalamic nucleus separated from the ventromedial part of the mediodorsal nucleus of the thalamus by the internal medullary lamina (Paxinos The rat nervous system 2nd ed, Academic Press, 1995). SM @@ -240806,14 +240876,14 @@ UBERON:0003031 submedial nucleus of thalamus - + - + FMA @@ -241000,7 +241070,7 @@ - + CD circular nucleus BAMS:CD @@ -241020,14 +241090,14 @@ UBERON:0003034 central dorsal nucleus of thalamus - + - + FMA NIFSTD @@ -241122,7 +241192,7 @@ - + @@ -241152,14 +241222,14 @@ UBERON:0003036 central lateral nucleus - + - + NIFSTD @@ -241564,7 +241634,7 @@ - + Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted]. @@ -241634,14 +241704,14 @@ central gray substance of midbrain http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png - + - + NIFSTD @@ -242154,7 +242224,7 @@ - + @@ -242193,7 +242263,7 @@ uncinate fasciculus http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray751.png - + @@ -242206,7 +242276,7 @@ - + NIFSTD @@ -242477,7 +242547,7 @@ - + White matter structure containing fibers arising from neurons in the cochlear nuclear complex. BAMS:vas BIRNLEX:991 @@ -242491,7 +242561,7 @@ UBERON:0003046 ventral acoustic stria - + @@ -242504,7 +242574,7 @@ - + FMA @@ -242665,7 +242735,7 @@ - + @@ -242705,7 +242775,7 @@ Olfactory placodes are the only ectodermal placodes to produce glia, a cell type typically derived from neural crest // Note that NBK53171 classifies this as non-neurogenic olfactory placode - + @@ -242719,7 +242789,7 @@ - + EHDAA2 @@ -242915,8 +242985,8 @@ - - + + The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate. consider adding class for organizer. Consider adding separate class for isthmus as a structure Lampreys also have an MHB [midbrain hindbrain boundary], expressing a similar repertoire of regulatory gene cognates as in gnathostomes.[well established][VHOG] @@ -242946,11 +243016,11 @@ midbrain-hindbrain boundary - + - + @@ -242964,13 +243034,13 @@ - + ZFA - + ZFA @@ -243015,8 +243085,8 @@ - - + + Proliferative region that is part of the ventricular system. Proliferative zone in the region of the neural tube adjacent to the lumen. There are two primary regions that are thought to give rise to neurons that make up the cerebellum. The first region is the ventricular zone (the roof of the fourth ventricle). This area produces Purkinje cells and deep cerebellar nuclear neurons[BTO:0003654]. @@ -243042,24 +243112,24 @@ ventricular zone - + - + - + MA - + ZFA @@ -243199,9 +243269,9 @@ - - - + + + A temporary epithelium that derives from the outer layer of the ectdoerm and is shed once the inner layer differentiates to form a true epidermis. The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL. Le Guellec et al, 2004.[TAO] relationship type change: OBO_REL:part_of ectoderm (TAO:0000016) CHANGED TO: develops_from ectoderm (UBERON:0000924)[TAO] @@ -243229,15 +243299,15 @@ periderm - + - + - + @@ -243250,19 +243320,19 @@ - + EHDAA2 - + EHDAA2 - + ZFA @@ -243418,7 +243488,7 @@ - + The hypochord is a transient rod-like structure in the embryos of fish, lampreys and amphibians that is located immediately ventral to the notochord. The hypochord may play a role in positioning the dorsal aorta[GO]. A transient rod-like structure which is endodermally derived and located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Eriksson and Lofberg, 2000.[TAO] Unsegmented ventral structure in the caudal region of anuran larvae; near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle.[AAO] @@ -243438,14 +243508,14 @@ Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived[ZFA]. near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle[AAO] hypochord - + - + Bgee:AN @@ -243525,7 +243595,7 @@ - + Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO] It is reasonable to assume that the proximate invertebrate ancestor of the vertebrates had an amphioxus-like tail bud in its larval stage. This archetypal tail bud would have (...) (3) lacked any component of mesenchyme cells, (4) budded off new mesodermal segments directly, without any intervening zone of presomitic mesoderm (...). Then, early in vertebrate evolution, epithelium-to-mesenchyme interconversions (and the gene networks for effecting them) became prominent features of development. (...) In any case, conspicuous mesenchymal components tended to be added to the vertebrate tail bud itself. In addition, a mesenchymatous presomitic mesoderm (not a part of the tail bud proper) came to intervene between the tail bud and the forming somites.[well established][VHOG] @@ -243550,14 +243620,14 @@ presomitic mesoderm - + - + Bgee:AN @@ -243616,8 +243686,8 @@ - - + + In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]. Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the anal region where it empties separately from, and just posterior to the anus. Kimmel et al, 1995.[TAO] The first-formed kidney duct, which drains the kidney of most anamniotes and becomes the ductus deferens of male amniotes. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-3, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG] @@ -243640,11 +243710,11 @@ The pronephric duct collects the filtrate from the pronephric tubules and opens to the exterior of the pronephric kidney[GOC:mtg_kidney_jan10, PMID:15647339, XAO:0000063, ZFA:0000150] pronephric duct - + - + @@ -243657,13 +243727,13 @@ - + Wikipedia - + XAO @@ -243851,8 +243921,8 @@ - - + + @@ -243865,7 +243935,7 @@ - + Organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]. the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo[MP]. This class groups together possibly disparate structures, following homology class in vHOG; early development terms need review A signaling center that directs the development of the whole embryo or of part of the embryo.[AAO] @@ -243911,15 +243981,15 @@ primitive knot - + - + - + @@ -243932,19 +244002,19 @@ - + ZFA - + EHDAA - + Bgee:AN @@ -244091,8 +244161,8 @@ - - + + A horseshoe-shaped thickening of the endoderm at the cranial (rostral) end of the primitive streak formed by the involution of Spemann's organizer cells which, together with the notochord, induces the formation of the neural plate from the overlying ectodermal cells and contributes mesodermal type cells to the surrounding tissue. TODO - check; developmental relationship to anterior hypoblast in ZFA? Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region. Kimmel et al, 1995.[TAO] @@ -244117,24 +244187,24 @@ prechordal plate - + - + - + ZFA - + PMID:16313393 @@ -244197,9 +244267,9 @@ - - - + + + @@ -244241,34 +244311,34 @@ intermediate mesoderm http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png - + - + - + - + AAO - + EMAPA - + XAO @@ -244901,7 +244971,7 @@ - + @@ -244933,7 +245003,7 @@ eye primordium - + @@ -244946,7 +245016,7 @@ - + PMID:16496288 XAO @@ -245001,8 +245071,8 @@ - - + + @@ -245031,24 +245101,24 @@ optic cup - + - + - + ZFA - + ZFA @@ -245112,7 +245182,7 @@ - + @@ -245147,7 +245217,7 @@ lens placode http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray864.png - + @@ -245160,7 +245230,7 @@ - + ZFA @@ -245234,7 +245304,7 @@ - + Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]. Consider adding subclasses for male and female specific variants TODO - mesonephric portion of the nephric duct @@ -245269,7 +245339,7 @@ mesonephric duct http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png - + @@ -245282,7 +245352,7 @@ - + EHDAA2 @@ -245363,9 +245433,9 @@ - - - + + + A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995.[TAO] @@ -245398,15 +245468,15 @@ neural plate https://upload.wikimedia.org/wikipedia/commons/8/8f/Neural_Crest.png - + - + - + @@ -245419,19 +245489,19 @@ - + GOTAX:0000352 - + Wikipedia - + Bgee:AN @@ -245546,7 +245616,7 @@ - + The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]. Mesoderm lateral to the neural tube and notochord that is divided into cranial and post-cranial portions. The trunk portions further segment into somites.[AAO] Presently, Cephalochordata, Urochordata, and Vertebrata are placed as subphyla of the phylum Chordata, in which the overall organization of embryonic tissues (dorsal hollow nerve cord, ventral digestive tract, axial notochord, and bilateral paraxial mesoderm) is largely conserved. In contrast, the echinoderms and hemichordates are sister groups of the chordates and they lack the notochord and paraxial mesoderm. Thus, the basic mesodermal organization of vertebrates must have appeared first in the common ancestor of the chordates.[well established][VHOG] @@ -245575,7 +245645,7 @@ paraxial mesoderm http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png - + @@ -245588,7 +245658,7 @@ - + Bgee:AN @@ -245657,14 +245727,14 @@ - + - + @@ -245690,11 +245760,11 @@ epibranchial placode - + - + @@ -245708,13 +245778,13 @@ - + ZFA - + EHDAA2-abduced @@ -245786,7 +245856,7 @@ - + @@ -245830,14 +245900,14 @@ floor plate http://upload.wikimedia.org/wikipedia/commons/8/89/Gray642.png - + - + Wikipedia @@ -245937,14 +246007,14 @@ - + - + @@ -245982,11 +246052,11 @@ lateral plate mesoderm http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png - + - + @@ -245999,14 +246069,14 @@ - + EHDAA2 VHOG - + EHDAA2 XAO @@ -246090,8 +246160,8 @@ - - + + @@ -246134,11 +246204,11 @@ myotome http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png - + - + @@ -246151,14 +246221,14 @@ - + WP ZFA - + EHDAA2-abduced @@ -246219,7 +246289,7 @@ - + Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]. Post-cranial portion of the neural crest. Exact anatomical derivations not experimentally resolved in amphibians.[AAO] We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] @@ -246239,14 +246309,14 @@ trunk neural crest - + - + ZFA @@ -246289,15 +246359,15 @@ - - + + - + Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone. should probably be merged with heart rudiment. Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001.[TAO] @@ -246317,15 +246387,15 @@ heart primordium - + - + - + @@ -246338,19 +246408,19 @@ - + ZFA - + ZFA - + XAO @@ -246697,8 +246767,8 @@ - - + + Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]. Skeletogenic portion of somites.[AAO] The vertebrate sclerotome has no equivalent in amphioxus and is a novelty linked with the evolution of the axial skeleton.[well established][VHOG] @@ -246725,11 +246795,11 @@ sclerotome http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png - + - + @@ -246748,13 +246818,13 @@ - + VHOG:0000680 - + ZFA @@ -246817,7 +246887,7 @@ - + The lateral line that is located above the eye. One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO] The lateral line that is located above the eye. [Butler_AB_and_Hodos_W, Comparative_vertebrate_neuroanatomy:_Evolution_and_Adaptation_(1996)_New_York:_Wiley-Liss_Inc., p.27][VHOG] @@ -246834,14 +246904,14 @@ supraorbital lateral line - + - + TAO @@ -246900,9 +246970,9 @@ - - - + + + The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus. Portion of tissue part of the pharyngeal endoderm that is fated to become thyroid follicle[ZFIN:curator]. In all vertebrates the thyroid arises from the ventral aspect of the second pouch @@ -246923,15 +246993,15 @@ thyroid primordium - + - + - + @@ -246944,19 +247014,19 @@ - + ZFA - + VHOG - + ISBN:0073040584 PMID:16313389 @@ -247010,9 +247080,9 @@ - - - + + + @@ -247055,15 +247125,15 @@ ultimobranchial body - + - + - + @@ -247076,19 +247146,19 @@ - + Wikipedia - + Wikipedia - + ISBN:0073040584 @@ -247197,7 +247267,7 @@ - + One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO] The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG] AAO:0011075 @@ -247211,14 +247281,14 @@ occipital lateral line - + - + TAO @@ -247247,7 +247317,7 @@ - + The lateral line that is located below the eye. One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO] The lateral line that is located below the eye. [Butler_AB_and_Hodos_W, Comparative_vertebrate_neuroanatomy:_Evolution_and_Adaptation_(1996)_New_York:_Wiley-Liss_Inc., p.27][VHOG] @@ -247263,14 +247333,14 @@ infraorbital lateral line - + - + TAO @@ -247383,7 +247453,7 @@ - + One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO] relationship loss: develops_from middle lateral line primordium (TAO:0005118)[TAO] relationship loss: part_of middle lateral line system (TAO:0005114)[TAO] @@ -247398,14 +247468,14 @@ middle lateral line - + - + TAO @@ -248008,8 +248078,8 @@ - - + + Embryonic tissue derived from the mesodermal germ layer that contains the dorsal aorta, genital ridges and mesonephros. This region is the first autonomous embryonic site for definitive haematopoiesis. Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo.[AAO] Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf.[TAO] @@ -248025,24 +248095,24 @@ dorsal lateral plate region - + - + - + XAO - + XAO @@ -248210,8 +248280,8 @@ - - + + @@ -248246,11 +248316,11 @@ Meckel's cartilage - + - + @@ -248263,13 +248333,13 @@ - + EHDAA2 - + VHOG @@ -248338,7 +248408,7 @@ - + (1) the arrangement of bones which supports the jaw from the braincase; (2) in teleost fish, a large, usually triangular, bone which supports the jaw. The teleost suspensorium is formed by fusion of various elements which vary among different taxa. requires review, possible split; TAO/ZFA structure is splanchoncranium (but includes some dermal bones as parts). Note AAO also includes 'palatoquadrate and suspensorium' as a class @@ -248353,14 +248423,14 @@ UBERON:0003108 suspensorium - + - + ZFA @@ -248676,7 +248746,7 @@ - + @@ -248715,14 +248785,14 @@ UBERON:0003113 dermatocranium - + - + ZFA @@ -249983,8 +250053,8 @@ - - + + @@ -250032,24 +250102,24 @@ chorion membrane http://upload.wikimedia.org/wikipedia/commons/5/51/Gray24.png - + - + - + Hymans - + ISBN:0073040584 @@ -250242,7 +250312,7 @@ - + @@ -250292,14 +250362,14 @@ http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg - + - + EHDAA2 @@ -251372,6 +251442,7 @@ BTO:0004711 EFO:0001927 HAO:0000398 + FBbt:00004482 uberon UBERON:0003153 @@ -252147,7 +252218,7 @@ - + A follicle of the insect ovary. It is formed by germ cells (one oocyte and several nurse cells) encapsulated in follicle cells (Armstrong et al., 2020). NCIT:C61362 UMLS:C1571705 @@ -252158,14 +252229,14 @@ UBERON:0003199 egg chamber - + - + https://github.com/obophenotype/uberon/issues/476 @@ -252717,7 +252788,7 @@ - + Anterior portion of the palate consisting of bone and mucous membranes [GO]. The hard palate is formed from bony processes of the maxilla, premaxilla and palatine bone [Kardong]. in FMA this is divided into bony parts and submucosa EMAPA:18952 @@ -252740,7 +252811,7 @@ hard palate https://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg - + @@ -252753,7 +252824,7 @@ - + check this EMAPA @@ -252796,7 +252867,7 @@ - + The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted]. TODO - compare with UBERON:0002198 It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] @@ -252844,14 +252915,14 @@ neural lobe of neurohypophysis http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG - + - + MP-def @@ -253094,7 +253165,7 @@ - + One of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO]. A mass of intermediate mesodermal cells around the distal end of the ureteric bud that gives rise to nephrons in the metanephric kidney. [TFD][VHOG] When the ureteric buds emerge from the nephric duct, they enter the metanephrogenic mesenchyme. The ureteric buds induce this mesenchymal tissue to condense around them and differentiate into the nephrons of the mammalian kidney. As this mesenchyme differentiates, it tells the ureteric bud to branch and grow.[well established][VHOG] @@ -253116,14 +253187,14 @@ Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 "Developmental Biology"] metanephric mesenchyme - + - + ISBN:9780878932504 @@ -253280,10 +253351,10 @@ - - - - + + + + An extrinsic flexor muscle of the fingers at the proximal interphalangeal joints.[WP]. EMAPA:36202 @@ -253297,19 +253368,19 @@ flexor digitorum superficialis http://upload.wikimedia.org/wikipedia/commons/5/53/Gray421.png - + - + - + - + @@ -253322,27 +253393,27 @@ - + dbpedia - + medial epicondyle of the humerus as well as parts of the radius and ulna. dbpedia - + anterior margins on the bases of the middle phalanges of the four fingers dbpedia - + dbpedia @@ -253395,8 +253466,8 @@ - - + + An extraembryonic structure that develops_from a syncytiotrophoblast and is part of a chorion. TODO - check EHDAA2:0001973 @@ -253405,24 +253476,24 @@ UBERON:0003224 chorion syncytiotrophoblast - + - + - + EHDAA2 - + polar trophectoderm syncytiotrophoblast EHDAA2 @@ -253469,11 +253540,11 @@ - - - - - + + + + + A muscle which originates on the distal humerus, inserts on the radius and accomplishes supination (rotation of the wrist). TODO - The term 'supinator' can also refer more generally to a muscle that causes supination of a part of the body. In older texts, the term 'supinator longus' was used to refer to the brachioradialis, and 'supinator brevis' was used to the muscle now known as the supinator. @@ -253491,23 +253562,23 @@ supinator muscle http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray420.png - + - + - + - + - + @@ -253520,34 +253591,34 @@ - + deep branch of radial nerve dbpedia - + Lateral epicondyle of humerus supinator crest of ulna radial collateral ligament annular ligament dbpedia - + Lateral epicondyle of humerus supinator crest of ulna radial collateral ligament annular ligament dbpedia - + palaeos - + dbpedia @@ -253587,7 +253658,7 @@ - + An epithelium that is part of a elbow [Automatically generated definition]. EHDAA2:0000430 EHDAA:4168 @@ -253605,14 +253676,14 @@ UBERON:0003229 epithelium of elbow - + - + EHDAA2 @@ -253681,7 +253752,7 @@ - + An epithelium that is part of a wrist [Automatically generated definition]. EHDAA2:0000219 EHDAA:5198 @@ -253696,7 +253767,7 @@ UBERON:0003230 epithelium of carpal region - + @@ -253709,7 +253780,7 @@ - + EHDAA2 @@ -253777,7 +253848,7 @@ - + An epithelium that is part of a hip [Automatically generated definition]. EHDAA2:0000784 EHDAA:5155 @@ -253799,14 +253870,14 @@ UBERON:0003231 epithelium of hip - + - + EHDAA2 @@ -253898,7 +253969,7 @@ - + An epithelium that is part of a knee [Automatically generated definition]. EHDAA2:0000896 EHDAA:5161 @@ -253912,14 +253983,14 @@ UBERON:0003232 epithelium of knee - + - + EHDAA2 @@ -253963,7 +254034,7 @@ - + An epithelium that is part of a shoulder [Automatically generated definition]. EHDAA2:0001835 EHDAA:4182 @@ -253977,14 +254048,14 @@ UBERON:0003233 epithelium of shoulder - + - + EHDAA2 @@ -254018,11 +254089,11 @@ - - - - - + + + + + The Extensor pollicis longus is much larger than the Extensor pollicis brevis muscle, the origin of which it partly covers. EMAPA:36196 @@ -254038,23 +254109,23 @@ extensor pollicis longus muscle http://upload.wikimedia.org/wikipedia/commons/3/3e/Extensor_pollicis_longus_muscle.png - + - + - + - + - + @@ -254067,31 +254138,31 @@ - + dbpedia - + dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -254504,10 +254575,10 @@ - - - - + + + + An epithelium that is part of a utricle of membranous labyrinth [Automatically generated definition]. TODO - check relationships w.r.t macula EHDAA:4730 @@ -254540,19 +254611,19 @@ UBERON:0003241 epithelium of utricle - + - + - + - + @@ -254565,25 +254636,25 @@ - + FMA - + FMA - + FMA - + FMA @@ -254706,9 +254777,9 @@ - - - + + + An epithelium that is part of a saccule of membranous labyrinth [Automatically generated definition]. TODO - check relationships w.r.t macula EHDAA:4724 @@ -254737,34 +254808,34 @@ UBERON:0003242 epithelium of saccule - + - + - + - + FMA - + FMA - + FMA @@ -254995,7 +255066,7 @@ - + @@ -255023,14 +255094,14 @@ epithelium of mammary gland - + - + EHDAA2 Wikipathways:WP2062 @@ -255161,7 +255232,7 @@ - + An epithelium that is part of a lower arm [Automatically generated definition]. EHDAA2:0000554 EHDAA:4174 @@ -255173,14 +255244,14 @@ UBERON:0003247 epithelium of forearm - + - + EHDAA2 @@ -255207,7 +255278,7 @@ - + An epithelium that is part of a footplate. EHDAA2:0000548 EHDAA:5145 @@ -255219,7 +255290,7 @@ UBERON:0003248 epithelium of footplate - + @@ -255232,7 +255303,7 @@ - + EHDAA2 @@ -255334,7 +255405,7 @@ - + A muscle that arises from the upper surface of the transverse process of the atlas and inserts into the under surface of the jugular process of the occipital bone. Lateral flexion @@ -255353,7 +255424,7 @@ rectus capitis lateralis muscle http://upload.wikimedia.org/wikipedia/commons/b/b7/Rectus_capitis_lateralis_muscle.PNG - + @@ -255366,7 +255437,7 @@ - + jugular process Wikipedia @@ -255454,7 +255525,7 @@ - + @@ -255490,14 +255561,14 @@ thoracic rib cage http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png - + - + check other species FMA @@ -255560,7 +255631,7 @@ - + The neck of the rib is the flattened portion which extends lateralward from the head; it is about 2.5 cm. long, and is placed in front of the transverse process of the lower of the two vertebrC& with which the head articulates. Its anterior surface is flat and smooth, its posterior rough for the attachment of the ligament of the neck, and perforated by numerous foramina. Of its two borders the superior presents a rough crest (crista colli costE) for the attachment of the anterior costotransverse ligament; its inferior border is rounded. On the posterior surface at the junction of the neck and body, and nearer the lower than the upper border, is an eminencebthe tubercle; it consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrC& to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs. EMAPA:37826 FMA:7576 @@ -255574,14 +255645,14 @@ neck of rib http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png - + - + PMID:15906248 @@ -255624,8 +255695,8 @@ - - + + we make the germ layer relationship develops_from, as currently the germ layers are declared to be purely embryonic. TODO - check. WP:Amnion - In the human embryo the earliest stages of the formation of the amnion have not been observed; in the youngest embryo which has been studied the amnion was already present as a closed sac, and appears in the inner cell-mass as a cavity. This cavity is roofed in by a single stratum of flattened, ectodermal cells, the amniotic ectoderm, and its floor consists of the prismatic ectoderm of the embryonic disk-the continuity between the roof and floor being established at the margin of the embryonic disk. Outside the amniotic ectoderm is a thin layer of mesoderm, which is continuous with that of the somatopleure and is connected by the body-stalk with the mesodermal lining of the chorion. UBERON:0008359 @@ -255642,11 +255713,11 @@ amniotic ectoderm - + - + @@ -255665,13 +255736,13 @@ - + EHDAA2 - + EHDAA2-via-amnioblasts ISBN:9780878932504 @@ -255951,7 +256022,7 @@ - + An endoderm that is part of a thyroid primordium. UBERON:0005235 EHDAA:956 @@ -255963,14 +256034,14 @@ UBERON:0003261 thyroid primordium endoderm - + - + ZFA-propagated @@ -256010,7 +256081,7 @@ - + A mesenchyme that is part of a amnion. we make the germ layer relationship develops_from, as currently the germ layers are declared to be purely embryonic. TODO - check. WP:Amnion - In the human embryo the earliest stages of the formation of the amnion have not been observed; in the youngest embryo which has been studied the amnion was already present as a closed sac, and appears in the inner cell-mass as a cavity. This cavity is roofed in by a single stratum of flattened, ectodermal cells, the amniotic ectoderm, and its floor consists of the prismatic ectoderm of the embryonic disk-the continuity between the roof and floor being established at the margin of the embryonic disk. Outside the amniotic ectoderm is a thin layer of mesoderm, which is continuous with that of the somatopleure and is connected by the body-stalk with the mesodermal lining of the chorion. @@ -256031,7 +256102,7 @@ amniotic mesoderm - + @@ -256050,7 +256121,7 @@ - + EHDAA2 @@ -256134,8 +256205,8 @@ - - + + A mesenchyme that is part of a chorion. TODO - check @@ -256156,11 +256227,11 @@ chorionic mesenchyme - + - + @@ -256179,13 +256250,13 @@ - + ISBN:0073040584 - + EHDAA2 @@ -256811,8 +256882,8 @@ - - + + A subdivision of the skeleton that corresponds to the lower part of the mouth. The lower jaw skeleton includes the following elements, when present: lower jaw teeth, the mandible and other lower jaw bones, and Meckel's cartilage. The ventral portion of the first pharyngeal arch, comprising the lower jaw.[TAO] The jaw joint of all jawed vertebrates, except for mammals, involves the quadrate and articular bones, or the posterior ends of the palatoquadrate and mandibular cartilages; A correlate of the conversion of the articular and quadrate bones to the malleus and incus is that all adult mammals have a jaw joint that lies between the dentary of the lower jaw and the squamosal bone of the skull roof.[well established][VHOG] @@ -256838,24 +256909,24 @@ skeleton of lower jaw - + - + - + EHDAA2 - + VHOG-modified @@ -257069,7 +257140,7 @@ - + @@ -257096,7 +257167,7 @@ mesentery of stomach - + @@ -257109,7 +257180,7 @@ - + MA @@ -257769,7 +257840,7 @@ - + A meninx that is part of a hindbrain [Automatically generated definition]. consider changing genus to subdivision of meninx Meninges that are part of the hindbrain. [Bgee_curator][VHOG] @@ -257787,14 +257858,14 @@ UBERON:0003291 meninx of hindbrain - + - + definitional @@ -258014,7 +258085,7 @@ - + Racemose mucous glands beneath the mucous membrane of the pharynx. BTO:0004849 EHDAA2:0001461 @@ -258027,14 +258098,14 @@ pharyngeal gland - + - + BTO @@ -258831,8 +258902,8 @@ - - + + A blood island that is part of a mesoderm. in EHDAA2, gives rise to blood and dorsal aorta UBERON:0003305 @@ -258845,11 +258916,11 @@ UBERON:0003304 mesoderm blood island - + - + @@ -258862,13 +258933,13 @@ - + EHDAA2 - + EHDAA2 @@ -259739,7 +259810,7 @@ - + Mesenchyme that is part of a developing camera-type eye. TODO - change mesenchyme relationships to precursor_of EHDAA2:0000485 @@ -259751,14 +259822,14 @@ UBERON:0003314 eye mesenchyme - + - + EHDAA2 @@ -260254,7 +260325,7 @@ - + Mesenchyme that is part of a developing upper jaw [Automatically generated definition]. EHDAA2:0002124 EHDAA:8031 @@ -260267,14 +260338,14 @@ UBERON:0003323 mesenchyme of upper jaw - + - + EHDAA2 @@ -260318,7 +260389,7 @@ - + Mesenchyme that is part of a developing lower jaw [Automatically generated definition]. EHDAA2:0001024 EHDAA:8003 @@ -260331,14 +260402,14 @@ UBERON:0003324 mesenchyme of lower jaw - + - + EHDAA2 @@ -260627,7 +260698,7 @@ - + Mesenchyme that is part of a footplate. We group two EMAPA classes here but these may need to be separated UBERON:0005260 @@ -260642,14 +260713,14 @@ UBERON:0003328 mesenchyme of footplate - + - + EHDAA2 @@ -262129,8 +262200,8 @@ - - + + An epithelium that is part of a pharynx [Automatically generated definition]. Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. Chen et al, 2007.[TAO] BSA:0000112 @@ -262150,24 +262221,24 @@ pharyngeal epithelium - + - + - + ZFA - + ZFA @@ -262226,7 +262297,7 @@ - + An epithelium that is part of a midgut. BTO:0005053 EHDAA2:0001195 @@ -262239,14 +262310,14 @@ UBERON:0003352 epithelium of midgut - + - + BTO @@ -263197,7 +263268,7 @@ - + An epithelium that is part of a vomeronasal organ [Automatically generated definition]. TODO - add cell types EHDAA2:0004102 @@ -263217,7 +263288,7 @@ UBERON:0003367 epithelium of vomeronasal organ - + @@ -263230,7 +263301,7 @@ - + EHDAA2 @@ -263356,7 +263427,7 @@ - + Found in the right atrium of the heart, the fossa ovalis is an embryonic remnant of the foramen ovale, which normally closes shortly after birth. In a heart specimen of a neonate, the fossa ovalis is translucent, but later in life the membrane thickens. FMA:9246 SCTID:277719009 @@ -263367,14 +263438,14 @@ UBERON:0003369 fossa ovalis of heart - + - + Wikipedia @@ -263412,14 +263483,14 @@ - + - + An unilaminar epithelium that surrounds a pelvic appendage bud. UBERON:0005232 EHDAA2:0001034 @@ -263435,24 +263506,24 @@ UBERON:0003371 pelvic appendage bud ectoderm - + - + - + EHDAA2 - + EHDAA2 @@ -263517,14 +263588,14 @@ - + - + An unilaminar epithelium that surrounds a pectoral appendage bud. UBERON:0005231 UBERON:0005663 @@ -263541,24 +263612,24 @@ UBERON:0003372 pectoral appendage bud ectoderm - + - + - + EHDAA2 - + EHDAA2 @@ -263658,7 +263729,7 @@ - + An extraembryonic structure that develops_from a ectoderm and is part of a chorion. BTO:0005145 EMAPA:16113 @@ -263669,14 +263740,14 @@ UBERON:0003374 chorionic ectoderm - + - + ISBN:0073040584 @@ -264994,7 +265065,7 @@ - + A lobar bronchus that is part of a right lung [Automatically generated definition]. EMAPA:17664 MA:0003134 @@ -265007,14 +265078,14 @@ UBERON:0003404 lobar bronchus of right lung - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -265065,7 +265136,7 @@ - + A lobar bronchus that is part of a left lung [Automatically generated definition]. EMAPA:17388 EMAPA:17656 @@ -265079,14 +265150,14 @@ UBERON:0003405 lobar bronchus of left lung - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -266029,8 +266100,8 @@ - - + + Mesenchyme that is part of a developing vomeronasal organ [Automatically generated definition]. EHDAA2:0004103 EMAPA:18445 @@ -266042,24 +266113,24 @@ UBERON:0003421 mesenchyme of vomeronasal organ - + - + - + EHDAA2 - + EHDAA2 @@ -266109,7 +266180,7 @@ - + A gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]. TODO - check @@ -266124,14 +266195,14 @@ mesenchyme of umbilical cord - + - + Wikipedia @@ -268466,7 +268537,7 @@ - + Nodular lymphoid structures on the serosal surface of the small intestine. add subtypes for jejunum, ileum @@ -268485,14 +268556,14 @@ UBERON:0003454 small intestine Peyer's patch - + - + ncithesaurus @@ -269137,7 +269208,7 @@ - + A bone that is part of a facial skeleton [Automatically generated definition]. test whether 'facial bone' is an exact synonym EMAPA:19019 @@ -269158,14 +269229,14 @@ facial bone - + - + MA @@ -269635,8 +269706,8 @@ - - + + The ureteral branches of renal artery are small branches which supply the ureter. ureteric artery @@ -269650,24 +269721,24 @@ ureteric segment of renal artery - + - + - + FMA - + FMA @@ -269747,7 +269818,7 @@ - + The superior labial artery (superior labial branch of facial artery) is larger and more tortuous than the inferior labial artery. It follows a similar course along the edge of the upper lip, lying between the mucous membrane and the Orbicularis oris, and anastomoses with the artery of the opposite side. It supplies the upper lip, and gives off in its course two or three vessels which ascend to the nose; a septal branch ramifies on the nasal septum as far as the point of the nose, and an alar branch supplies the ala of the nose. EMAPA:37430 @@ -269764,14 +269835,14 @@ artery of upper lip - + - + FMA @@ -269835,7 +269906,7 @@ - + The inferior labial artery (inferior labial branch of facial artery) arises near the angle of the mouth; it passes upward and forward beneath the Triangularis and, penetrating the Orbicularis oris, runs in a tortuous course along the edge of the lower lip between this muscle and the mucous membrane. It supplies the labial glands, the mucous membrane, and the muscles of the lower lip; and anastomoses with the artery of the opposite side, and with the mental branch of the inferior alveolar artery. EMAPA:37429 @@ -269853,14 +269924,14 @@ artery of lower lip - + - + FMA @@ -270184,7 +270255,7 @@ - + The inferior labial vein is the vein receiving blood from the upper lip. EMAPA:37204 @@ -270200,14 +270271,14 @@ vein of upper lip - + - + FMA @@ -270257,7 +270328,7 @@ - + The inferior labial vein is the vein receiving blood from the lower lip. EMAPA:37202 @@ -270275,14 +270346,14 @@ vein of lower lip http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -270819,7 +270890,7 @@ - + A holocrine gland of the dermis that secretes sebum into hair follicles. MA:0000149 SCTID:115977007 @@ -270830,14 +270901,14 @@ skin sebaceous gland - + - + FMA @@ -270958,8 +271029,8 @@ - - + + An endothelium of capillary that is part of a respiratory system [Automatically generated definition]. EMAPA:37575 MA:0001808 @@ -270990,24 +271061,24 @@ UBERON:0003489 respiratory system capillary endothelium - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -271291,7 +271362,7 @@ - + A reticular lamina that is part of a bronchus [Automatically generated definition]. EMAPA:37811 MA:0001834 @@ -271316,14 +271387,14 @@ UBERON:0003492 bronchus reticular lamina - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -271458,7 +271529,7 @@ - + A reticular lamina that is part of a trachea [Automatically generated definition]. EMAPA:37554 MA:0001856 @@ -271475,14 +271546,14 @@ UBERON:0003493 trachea reticular lamina - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -271626,7 +271697,7 @@ - + An arteriole that is part of a respiratory system [Automatically generated definition]. EMAPA:37568 MA:0001803 @@ -271634,14 +271705,14 @@ UBERON:0003495 respiratory system arteriole - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -271674,7 +271745,7 @@ - + A blood vessel that is part of a head [Automatically generated definition]. EMAPA:36610 MA:0000575 @@ -271686,14 +271757,14 @@ UBERON:0003496 head blood vessel - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -273561,7 +273632,7 @@ - + A capillary that is part of a kidney [Automatically generated definition]. EMAPA:31443 @@ -273579,14 +273650,14 @@ kidney capillary - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -274948,32 +275019,32 @@ - - + + A macula densa that is part of a distal convoluted tubule [Automatically generated definition]. MA:0001668 uberon UBERON:0003546 distal convoluted tubule macula densa - + - + - + MA - + MA @@ -278416,7 +278487,7 @@ - + @@ -278436,14 +278507,14 @@ dermis connective tissue - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -281773,7 +281844,7 @@ - + @@ -281812,14 +281883,14 @@ manual digit 2 https://upload.wikimedia.org/wikipedia/commons/d/d5/Index_finger.JPG - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -281912,7 +281983,7 @@ - + @@ -281951,14 +282022,14 @@ manual digit 3 https://upload.wikimedia.org/wikipedia/commons/f/fd/Middle_finger.jpg - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -282064,7 +282135,7 @@ - + @@ -282101,14 +282172,14 @@ manual digit 4 https://upload.wikimedia.org/wikipedia/commons/1/14/Ring_finger.JPG - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -282199,7 +282270,7 @@ - + @@ -282238,14 +282309,14 @@ manual digit 5 http://upload.wikimedia.org/wikipedia/commons/e/ed/Pink.jpg - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -282350,7 +282421,7 @@ - + @@ -282406,14 +282477,14 @@ pedal digit 1 http://upload.wikimedia.org/wikipedia/commons/a/ab/RightFootToes.jpg - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -282541,7 +282612,7 @@ - + @@ -282578,14 +282649,14 @@ pedal digit 2 - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -282694,7 +282765,7 @@ - + @@ -282731,14 +282802,14 @@ pedal digit 3 - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -282985,7 +283056,7 @@ - + @@ -283031,14 +283102,14 @@ pedal digit 5 http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -286536,7 +286607,7 @@ - + A bone that is part of a mesopodial skeleton. The carpus (wrist) and tarsus (ankle) of land vertebrates primitively had three rows of carpal or tarsal bones. Often some of these have become lost or fused in evolution. Three proximals. In the hand humans has all three. In the foot the middle proximal appears in 5-15% of people as an os trigonum. Centrale or os centrale, on the medial side. In humans and our closest relatives the African apes (chimpanzees and gorillas) it fuses to the scaphoid where it forms the articulation with the trapezoid bone; occasionally it stays separate. In Man's foot it is the navicular. Some early land vertebrates had more than one (up to three) os centrale per hand or foot. Distals, one per finger / toe at the base of each metacarpal or metatarsal. In mammals the 4th and 5th fuse. In the horse the 1st is lost EMAPA:36579 @@ -286550,7 +286621,7 @@ UBERON:0003656 mesopodium bone - + @@ -286563,7 +286634,7 @@ - + https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern @@ -286657,7 +286728,7 @@ - + Any muscle organ that is part of a hip [Automatically generated definition]. MA:0000657 hip muscle organ @@ -286670,14 +286741,14 @@ UBERON:0003658 hip muscle - + - + prolog @@ -286954,14 +287025,14 @@ - + - + Any muscle organ that is part of a limb [Automatically generated definition]. EMAPA:32700 MA:0000692 @@ -286973,24 +287044,24 @@ limb muscle - + - + - + prolog - + https://purl.obolibrary.org/obo/uberon/tracker/324 @@ -287034,7 +287105,7 @@ - + Any muscle organ that is part of a forelimb. FMA and MA class actually refer to muscles of entire pectoral complex UBERON:0005634 @@ -287056,14 +287127,14 @@ UBERON:0003662 forelimb muscle - + - + prolog @@ -287158,7 +287229,7 @@ - + Any muscle organ that is part of a hindlimb [Automatically generated definition]. AAO:0000222 EFO:0001928 @@ -287180,14 +287251,14 @@ hindlimb muscle - + - + prolog @@ -287778,7 +287849,7 @@ - + A combination of exfoliated (shed) epithelial cells, transudated skin oils, and moisture. It occurs in both female and male mammalian genitalia[WP]. FMA:19656 GAID:1170 @@ -287790,14 +287861,14 @@ UBERON:0003670 smegma - + - + Wikipedia @@ -288022,8 +288093,8 @@ - - + + A tooth that is typically long and pointed and bearing a single cusp. @@ -288057,25 +288128,25 @@ cuspid https://upload.wikimedia.org/wikipedia/commons/5/57/Azawakh_K9.jpg - + - + - + 1 cardinality not allowed with transitivity in OWL - + Wikipedia @@ -288255,7 +288326,7 @@ - + @@ -288287,14 +288358,14 @@ patellar ligament - + - + FMA @@ -288538,9 +288609,9 @@ - - - + + + In humans: Muscles arising in the zygomatic arch that close the jaw. Their nerve supply is masseteric from the mandibular division of the trigeminal nerve. (From Stedman, 25th ed). we use this specifically for a jaw muscle that is innervates by the mandibular nerve. @@ -288563,34 +288634,34 @@ masticatory muscle http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png - + - + - + - + dbpedia - + Wikipedia - + MESH @@ -288887,7 +288958,7 @@ - + @@ -288914,7 +288985,7 @@ cranial suture - + @@ -288927,7 +288998,7 @@ - + PMID:16496288 @@ -288963,7 +289034,7 @@ - + Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]. FMA:57490 GAID:217 @@ -288981,14 +289052,14 @@ tooth socket https://upload.wikimedia.org/wikipedia/commons/2/2e/Alveole_zahn.jpg - + - + MESH-modified @@ -289147,7 +289218,7 @@ - + The sella turcica is a saddle-shaped depression in the sphenoid bone at the base of the human skull. [WP,unvetted]. for consistency with FMA we have a separate class for the cavity of the sella turcica CALOHA:TS-2342 @@ -289167,7 +289238,7 @@ sella turcica http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png - + @@ -289180,7 +289251,7 @@ - + FMA @@ -289236,7 +289307,7 @@ - + A collection of sacral vertebrae in the sacral region that are fused and part of the bony pelvis. sacral @@ -289264,7 +289335,7 @@ fused sacrum http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray95.png - + @@ -289277,7 +289348,7 @@ - + FMA @@ -289448,7 +289519,7 @@ - + Any joint connecting the acromonion of the scapula and clavicle. The gliding joint formed by the outer extremity of the clavicle and the inner margin of the acromion process of the scapula. FMA:25898 @@ -289466,7 +289537,7 @@ acromioclavicular joint http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray326.png - + @@ -289479,7 +289550,7 @@ - + FMA @@ -290103,7 +290174,7 @@ - + @@ -290146,7 +290217,7 @@ pubic symphysis http://upload.wikimedia.org/wikipedia/commons/5/51/Gray321.png - + @@ -290159,7 +290230,7 @@ - + FMA @@ -290250,7 +290321,7 @@ - + @@ -290285,14 +290356,14 @@ temporomandibular joint http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray309.png - + - + FMA-abduced-lr @@ -290387,7 +290458,7 @@ - + @@ -290419,7 +290490,7 @@ calcaneal tendon http://upload.wikimedia.org/wikipedia/commons/3/3c/Achilles-tendon.jpg - + @@ -290432,7 +290503,7 @@ - + FMA @@ -290486,7 +290557,7 @@ - + @@ -290512,7 +290583,7 @@ inguinal canal http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray1227.png - + @@ -290525,7 +290596,7 @@ - + Wikipedia @@ -290622,7 +290693,7 @@ - + @@ -290649,7 +290720,7 @@ intrahepatic bile duct - + @@ -290662,7 +290733,7 @@ - + MA @@ -290705,7 +290776,7 @@ - + A small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct. finding in ncit; GALT in chickens FMA:14967 @@ -290723,14 +290794,14 @@ UBERON:0003705 Meckel's diverticulum - + - + Wikipedia @@ -290782,8 +290853,8 @@ - - + + @@ -290811,25 +290882,25 @@ laryngeal vocal fold - + - + - + BTO FMA-abduced - + FMA-abduced-lr @@ -290887,7 +290958,7 @@ - + @@ -290918,14 +290989,14 @@ sinus of Valsalva http://upload.wikimedia.org/wikipedia/commons/5/54/Gray497.png - + - + FMA MP @@ -291037,8 +291108,8 @@ - - + + A circle of arteries that supply blood to the brain. The Circle of Willis comprises the following arteries: Anterior cerebral artery (left and right); Anterior communicating artery; Internal carotid artery (left and right); Posterior cerebral artery (left and right); Posterior communicating artery (left and right).The basilar artery and middle cerebral arteries, supplying the brain, are also considered part of the circle. In zebrafish, the circle of vessels comprised of the basal communicating artery (BCA) and posterior communicating segments (PCS) superficially resemble but are not homologous to the human circle of Willis arterial circle @@ -291061,24 +291132,24 @@ circle of Willis http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + - + FMA-modified - + FMA-modified @@ -291617,7 +291688,7 @@ - + @@ -291643,14 +291714,14 @@ UBERON:0003716 recurrent laryngeal nerve - + - + Wikipedia @@ -291771,7 +291842,7 @@ - + Any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers. may also be present in the mesentery of cats, in pancreas, in lymph nodes [ISBN:9780849388118] consists of a nerve fiber, an inner core of modified Schwann cells, a subcapsular space and a capsule [ISBN:9780849388118] @@ -291808,7 +291879,7 @@ Pacinian corpuscle http://upload.wikimedia.org/wikipedia/commons/5/52/Gray935.png - + @@ -291821,7 +291892,7 @@ - + may also be located in organs - check @@ -292483,7 +292554,7 @@ - + The central part of the thoracic cavity enclosed by the left and right pleurae. mediastinal CALOHA:TS-2338 @@ -292505,14 +292576,14 @@ mediastinum http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png - + - + FMA @@ -292715,7 +292786,7 @@ - + A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]. AR activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth. There are three phases of prostatic budding: (1) the specification phase, when instructive developmental cues define where buds will form in the UGS, (2) the initiation phase, when prostatic buds begin to form, and (3) the elongation phase, when proliferation, cell adhesion, and cell migration coordinate outgrowth of prostatic buds into UGM. Timing of prostatic bud formation and the quantity and pattern of buds that are formed in the UGS are strictly regulated [3, 4]. The position of prostatic buds as they emerge from the UGS in utero determines the arrangement of prostate ducts in adulthood.[PMID:18977204] EMAPA:36141 @@ -292727,14 +292798,14 @@ UBERON:0003820 prostate bud - + - + PMID:18977204 @@ -292773,7 +292844,7 @@ - + A bone of the metapodial skeleton. EMAPA:37284 MA:0000301 @@ -292787,7 +292858,7 @@ UBERON:0003821 metapodium bone - + @@ -292800,7 +292871,7 @@ - + https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern @@ -292857,7 +292928,7 @@ - + @@ -292906,14 +292977,14 @@ forelimb stylopod - + - + MA @@ -293018,7 +293089,7 @@ - + @@ -293078,14 +293149,14 @@ hindlimb zeugopod - + - + MA @@ -293577,7 +293648,7 @@ - + Any muscle organ that is part of a thorax [Automatically generated definition]. MA:0000561 muscle organ of thorax @@ -293587,14 +293658,14 @@ UBERON:0003830 thoracic segment muscle - + - + prolog @@ -293703,7 +293774,7 @@ - + Any muscle organ that is part of a esophagus [Automatically generated definition]. merge muscle and muscle layer? EMAPA:26983 @@ -293720,14 +293791,14 @@ UBERON:0003832 esophagus muscle - + - + MA @@ -294690,7 +294761,7 @@ - + Epithelium that is part of a developing tooth or dental organ. see comments for dental organ. todo - full developmental relationships @@ -294715,14 +294786,14 @@ dental epithelium - + - + epithelium JB @@ -294947,7 +295018,7 @@ - + @@ -294980,14 +295051,14 @@ thymus epithelium - + - + PMID:21293377 @@ -295536,7 +295607,7 @@ - + A neural plate that develops_from a future spinal cord. Neural plate that is part of the spinal cord. [Bgee_curator][VHOG] (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...)[well established][VHOG] @@ -295549,14 +295620,14 @@ UBERON:0003854 spinal cord neural plate - + - + ZFA @@ -295661,7 +295732,7 @@ - + @@ -295687,14 +295758,14 @@ uncondensed odontogenic mesenchyme - + - + see comments @@ -295767,7 +295838,7 @@ - + Mesenchyme that is part of a developing upper eyelid [Automatically generated definition]. EHDAA2:0002117 EHDAA:9051 @@ -295780,14 +295851,14 @@ UBERON:0003857 upper eyelid mesenchyme - + - + cjm @@ -295831,7 +295902,7 @@ - + Mesenchyme that is part of a developing lower eyelid [Automatically generated definition]. EHDAA2:0001017 EHDAA:9045 @@ -295844,14 +295915,14 @@ UBERON:0003858 lower eyelid mesenchyme - + - + EHDAA2 @@ -297132,8 +297203,8 @@ cornu ammonis 1 hippocampus CA1 prosubiculum = distal ca1 - regio i cornus ammonis - regio i hippocampi proprii + regio I cornus ammonis + regio I hippocampi proprii regio superior regio superior of the hippocampus region 1 of Ammon's horn @@ -297197,7 +297268,7 @@ - regio i cornus ammonis + regio I cornus ammonis FMA:74042 FMA:TA @@ -297205,7 +297276,7 @@ - regio i hippocampi proprii + regio I hippocampi proprii FMA:74042 FMA:TA @@ -297711,8 +297782,8 @@ - - + + @@ -297732,24 +297803,24 @@ mesometrium - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + MA @@ -297829,7 +297900,7 @@ - + The part of the coelom in the embryo between the somatopleuric and splanchnopleuric mesoderm; the principal body cavities of the trunk (thoracic, abdominal, and pelvic) arise from this embryonic part of the coelom. consider merging with coelom. TODO - add spatial relationships to halves of LPM. Note the OG places XAO and ZFA coelem terms here. editor note: TODO check ZFA, which appears to be a structure present in adults (...) I regard it unlikely that coeloms of all bilaterian animals are comparable and evolved very early. Considering all these questions, few convincing characters concerning the evolution of body cavities remain to be named. (...) A segmental coelom appears to have evolved at least two times, in Annelida and in Myomerata (Acrania and Craniota).[well established][VHOG] @@ -297845,14 +297916,14 @@ intraembryonic coelom - + - + Wikipedia @@ -298025,7 +298096,7 @@ - + @@ -298078,14 +298149,14 @@ fallopian tube http://upload.wikimedia.org/wikipedia/commons/6/68/Scheme_female_reproductive_system-en.svg - + - + FMA-abduced-lr @@ -298158,7 +298229,7 @@ - + Paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]. Either of the paired embryonic ducts developing into the uterine tubes, uterus, and vagina in the female and becoming largely obliterated in the male. [TFD][VHOG] Transient developmental organ which gives rise to oviducts in female (documented to persist in some male frogs).[AAO] @@ -298188,14 +298259,14 @@ Mullerian duct http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png - + - + Wikipedia @@ -298347,8 +298418,8 @@ - - + + A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum. consider adding further subdivisions of the endoderm, e.g. ventral foregut. Note we place two EFO classes here, it's not clear how they differ @@ -298377,11 +298448,11 @@ liver primordium - + - + @@ -298400,13 +298471,13 @@ - + EHDAA2 - + ventral foregut endoderm Zaret 1996 @@ -298597,7 +298668,7 @@ - + @@ -298617,14 +298688,14 @@ UBERON:0003898 skeletal muscle tissue of trunk - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -298738,7 +298809,7 @@ - + @@ -298770,14 +298841,14 @@ horizontal septum - + - + ISBN:0073040584 @@ -298845,7 +298916,7 @@ - + The part of the retina that contains neurons and photoreceptor cells[GO]. (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] @@ -298877,14 +298948,14 @@ retinal neural layer - + - + Bgee:AN @@ -298956,7 +299027,7 @@ - + @@ -298980,14 +299051,14 @@ bursa of Fabricius - + - + Wikipedia @@ -299825,7 +299896,7 @@ - + Embryonic structure that develops into pancreatic bud. in EHDAA2 this has dorsal and ventral primordia as parts. the buds are part of the primordium, with the ducts developing from the buds; only parenchyma and ducts have contribution from buds revisit after standardizing terms 'primordium', 'anlagen', 'bud' @@ -299849,14 +299920,14 @@ pancreas primordium http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png - + - + Wikipedia @@ -299896,16 +299967,16 @@ - - + + - - + + The embryonic pancreas develops from two separate anlagen in the foregut epithelium, one dorsal and two ventral pancreatic buds[PMID]. EFO:0003470 EMAPA:35645 @@ -299926,19 +299997,19 @@ http://upload.wikimedia.org/wikipedia/commons/4/49/Suckale08FBS_fig1_pancreas_development.jpeg http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png - + - + - + - + @@ -299951,26 +300022,26 @@ - + EHDAA2 - + Wikipedia:Pancreas#Embryological_development - + zebrafish Wikipedia:Pancreatic_bud - + EHDAA2-inferred @@ -300012,8 +300083,8 @@ - - + + Pancreatic bud that gives rise to the accessory pancreatic duct. The pancreatic bud that gives rise to the accessory pancreatic duct.[AAO] In chick, Xenopus laevis, and the teleost fish Medaka, the pancreas develops from three buds that emerge from the gut tube, two from its ventral aspect, and one from its dorsal aspect. In mouse, although there are initially three buds that arise from the gut tube at the point of contact between the endoderm and the vasculature, the pancreas develops from only two of these buds, one dorsal and one ventral. (...) In this study, we use a transgenic zebrafish line (...). We provide evidence for the existence of two distinct pancreatic anlagen - a ventral anterior bud and a dorsal posterior bud - that join to form the definitive pancreas (reference 1); The pancreas develops from the fusion of distinct endoderm-derived dorsal and ventral diverticula. In humans, by day 35 of development, the ventral pancreatic bud begins to migrate backwards and comes into contact and eventually fuses with the dorsal pancreatic bud during the sixth week of development (reference 2).[well established][VHOG] @@ -300041,24 +300112,24 @@ dorsal pancreatic bud http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png - + - + - + EHDAA2 - + XAO @@ -300105,8 +300176,8 @@ - - + + Pancreatic bud that gives rise to the major pancreatic duct. In chick, Xenopus laevis, and the teleost fish Medaka, the pancreas develops from three buds that emerge from the gut tube, two from its ventral aspect, and one from its dorsal aspect. In mouse, although there are initially three buds that arise from the gut tube at the point of contact between the endoderm and the vasculature, the pancreas develops from only two of these buds, one dorsal and one ventral. (...) In this study, we use a transgenic zebrafish line (...). We provide evidence for the existence of two distinct pancreatic anlagen - a ventral anterior bud and a dorsal posterior bud - that join to form the definitive pancreas (reference 1); The pancreas develops from the fusion of distinct endoderm-derived dorsal and ventral diverticula. In humans, by day 35 of development, the ventral pancreatic bud begins to migrate backwards and comes into contact and eventually fuses with the dorsal pancreatic bud during the sixth week of development (reference 2).[well established][VHOG] The ventral pancreatic bud becomes the head and uncinate process, and comes from the hepatic diverticulum[WP] @@ -300134,24 +300205,24 @@ ventral pancreatic bud http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png - + - + - + EHDAA2 - + PMID:16417468 WP @@ -300184,7 +300255,7 @@ - + @@ -300211,14 +300282,14 @@ photoreceptor inner segment layer - + - + MA @@ -300257,7 +300328,7 @@ - + @@ -300283,14 +300354,14 @@ photoreceptor outer segment layer - + - + MA @@ -301997,7 +302068,7 @@ - + @@ -302046,7 +302117,7 @@ Bruch's membrane https://github.com/obophenotype/uberon/issues/14 - + @@ -302059,7 +302130,7 @@ - + FMA ZFA @@ -302171,7 +302242,7 @@ - + @@ -302208,14 +302279,14 @@ rete testis http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg - + - + Wikipedia @@ -302250,8 +302321,8 @@ - - + + @@ -302276,24 +302347,24 @@ styloid process of temporal bone http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png - + - + - + ISBN:0073040584 - + MP-implied-by-def @@ -302418,7 +302489,7 @@ - + The small parasympathetic ganglion that supplies nerve fibers to the lacrimal, nasal, palatine and pharyngeal glands. BAMS:GptVII EHDAA2:0001889 @@ -302440,14 +302511,14 @@ pterygopalatine ganglion http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png - + - + definitional @@ -302930,8 +303001,8 @@ - - + + One of the conchae of the ethmoid bone, which occupy the caudal part of the nasal fossae and form the lateral and superior portions of the turbinate bones in mammals[MP]. The ethmoturbinals are associated with the cribiform plate. They are covered with olfactory epithelium. Primarily, they serve to increase the surface area over which olfactory receptor neurons can come in contact with respiratory air. These olfactory receptor nerves then synapse with the mitral cells of the olfactory lobes through the cribiform plate in the manner described above[Palaeos]. FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here EMAPA:37914 @@ -302946,24 +303017,24 @@ nasal concha of ethmoid bone - + - + - + MP:0008971 - + ISBN:0073040584 @@ -303004,7 +303075,7 @@ - + @@ -303040,7 +303111,7 @@ upper part of vagina - + @@ -303053,7 +303124,7 @@ - + EMAPA @@ -304278,7 +304349,7 @@ - + @@ -304308,7 +304379,7 @@ interventricular foramen of CNS - + @@ -304321,7 +304392,7 @@ - + MP @@ -304538,8 +304609,8 @@ - - + + @@ -304580,11 +304651,11 @@ hyoid bone greater horn - + - + @@ -304597,13 +304668,13 @@ - + FMA-abduced-lr - + Wikipedia @@ -304748,8 +304819,8 @@ - - + + @@ -304781,11 +304852,11 @@ hyoid bone lesser horn - + - + @@ -304798,13 +304869,13 @@ - + FMA-abduced-lr - + MP-implied-by-def @@ -305385,8 +305456,8 @@ - - + + The embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium. DHBA:12698 EHDAA2:0004401 @@ -305398,11 +305469,11 @@ cerebellar plate - + - + @@ -305415,13 +305486,13 @@ - + EHDAA2 - + EHDAA2 @@ -305636,8 +305707,8 @@ - - + + One of the folds of skin which form the inner lips on both sides of the vaginal opening. FMA:20374 MA:0002845 @@ -305657,24 +305728,24 @@ labium minora http://upload.wikimedia.org/wikipedia/commons/b/b7/Vulva_labeled_english.jpg - + - + - + FMA-abduced-lr - + Wikipedia @@ -305749,8 +305820,8 @@ - - + + A transitional population of migrating mesenchymal cells that derive from somites and that will become dermal cells. Not to be confused with 'dermatome segment of skin'. @@ -305777,11 +305848,11 @@ dermatome http://upload.wikimedia.org/wikipedia/commons/f/f3/Gray64.png - + - + @@ -305794,13 +305865,13 @@ - + AEO-text - + EHDAA2-abduced @@ -305848,7 +305919,7 @@ - + The mesenchymal cells that give rise to the corneal endothelium, corneal stroma, sclera, iris stroma, ciliary muscle, ciliary stroma, and trabecular meshwork of the eye[MP]. Periocular mesenchyme (PM) is a mesencephalic neural crest derived cell population which as a result of an interaction with the retinal pigment epithelium forms the scleral cartilage of the avian eye Check XAO once it has a definition. @@ -305860,14 +305931,14 @@ periocular mesenchyme - + - + PMID:3709965 @@ -306015,8 +306086,8 @@ - - + + @@ -306036,25 +306107,25 @@ spongiotrophoblast layer - + - + - + MP:0004255 PMID:11433360 - + PMID:19829370 @@ -306439,8 +306510,8 @@ - - + + The vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation. EMAPA:37456 FMA:51873 @@ -306459,24 +306530,24 @@ canal of Schlemm - + - + - + FMA/obol - + FMA/obol @@ -306867,7 +306938,7 @@ - + @@ -306886,14 +306957,14 @@ cortical intermediate zone - + - + Wikipedia @@ -306985,7 +307056,7 @@ - + The nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp. EMAPA:37961 @@ -306997,14 +307068,14 @@ spleen secondary B follicle - + - + CL:tm @@ -307044,7 +307115,7 @@ - + The spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals. TODO check duct vs canal. Also check FMA - has many subtypes of semicircular canal such as 'ampulla of anterior semicircular canal' EMAPA:32831 @@ -307060,14 +307131,14 @@ semicircular canal ampulla http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg - + - + MA @@ -307637,8 +307708,8 @@ - - + + @@ -307660,11 +307731,11 @@ primitive pit - + - + @@ -307677,13 +307748,13 @@ - + EHDAA2 - + EHDAA2 @@ -307789,7 +307860,7 @@ - + @@ -307816,14 +307887,14 @@ biliary ductule - + - + BTO @@ -307925,7 +307996,7 @@ - + The layer of undifferentiated, proliferating cells that line the neural tube lumen that is the immediate transformation of the germinal neuroepithelium. consider merging with 'ventricular zone'; note that the MA class probably does not belong here, as this is an embryonic structure The layer of undifferentiated, proliferating cells that line the neural tube lumen @@ -307943,7 +308014,7 @@ neural tube ventricular layer - + @@ -307956,7 +308027,7 @@ - + NCBIBook:NBK10047 @@ -308015,7 +308086,7 @@ - + @@ -308039,7 +308110,7 @@ neural tube mantle layer - + @@ -308052,7 +308123,7 @@ - + by division NCBIBook:NBK10047 @@ -308089,7 +308160,7 @@ - + @@ -308106,14 +308177,14 @@ neural tube marginal layer - + - + forms from axons @@ -308214,7 +308285,7 @@ - + @@ -308239,14 +308310,14 @@ neural tube basal plate - + - + Shh Swenson @@ -308371,8 +308442,8 @@ - - + + The lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it. EHDAA2:0000916 @@ -308391,24 +308462,24 @@ lateral nasal prominence http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png - + - + - + EHDAA2 - + Wikipedia @@ -308456,14 +308527,14 @@ - + - + The central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it. Fusion of right and left medial nasal processes forms a primary palate rostrally and the nasal septum caudally. The incisive bone, including upper incisor teeth and the rostral up- per lip, are derived from the primary palate. The nasal septum consists of bone, cartilage, and a patch of soft tissue membrane that separates right & left halves of the nasal cavity. EHDAA2:0001076 @@ -308484,24 +308555,24 @@ medial nasal prominence http://upload.wikimedia.org/wikipedia/commons/8/85/Gray45.png - + - + - + EHDAA2 - + Wikipedia @@ -308549,14 +308620,14 @@ - + - + The forebrain region that coordinates sensory signaling arising from the vomeronasal organ; it is located on the dorsal-posterior portion of the main olfactory bulb, and the axons that leave the accessory olfactory bulb project to targets in the amygdala and hypothalamus. @@ -308582,24 +308653,24 @@ Projection notes: Site of termination of vomeronasal nerve; projects to: other parts of pallial amygdala, medial amygdala, subpallial nucleus (Butler and Hodos) accessory olfactory bulb - + - + - + cjm - + ISBN:0471888893 @@ -308720,8 +308791,8 @@ - - + + The nucleus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable. The interposed nucleus is a deep nucleus of the cerebellum and is composed of the globose nuclei and the emboliform nuclei. It is located in in the roof (dorsal aspect) of the fourth ventricle, lateral to the fastigial nucleus. It receives its afferent supply from the anterior lobe of the cerebellum and sends output via the superior cerebellar peduncle to the red nucleus. @@ -308746,24 +308817,24 @@ cerebellum interpositus nucleus - + - + - + NIFSTD - + ISBN:0471888893 @@ -308930,8 +309001,8 @@ - - + + @@ -308962,11 +309033,11 @@ cerebellum vermis lobule II - + - + @@ -308979,13 +309050,13 @@ - + ABA - + MA @@ -309025,7 +309096,7 @@ - + @@ -309064,7 +309135,7 @@ cerebellum vermis lobule III - + @@ -309077,7 +309148,7 @@ - + ABA @@ -309111,7 +309182,7 @@ - + @@ -309141,7 +309212,7 @@ cerebellum vermis lobule IV - + @@ -309154,7 +309225,7 @@ - + ABA @@ -309182,7 +309253,7 @@ - + The uvula (uvular lobe) forms a considerable portion of the inferior vermis; it is separated on either side from the tonsil by the sulcus valleculC&, at the bottom of which it is connected to the tonsil by a ridge of gray matter, indented on its surface by shallow furrows, and hence called the furrowed band. BAMS:UVU BAMS:Uvu @@ -309212,7 +309283,7 @@ The uvula is the second largest lobule, following the culmen. It pertains to the paleocerebellum and is separated from the nodule by the posterolateral fissure. cerebellum vermis lobule IX - + @@ -309225,7 +309296,7 @@ - + NIFSTD @@ -309289,7 +309360,7 @@ - + @@ -309324,7 +309395,7 @@ cerebellum vermis lobule V - + @@ -309337,7 +309408,7 @@ - + ABA @@ -309383,7 +309454,7 @@ - + @@ -309418,7 +309489,7 @@ cerebellum vermis lobule VI - + @@ -309431,7 +309502,7 @@ - + MP @@ -309664,7 +309735,7 @@ - + @@ -309697,7 +309768,7 @@ cerebellum vermis lobule X - + @@ -309710,7 +309781,7 @@ - + NIFSTD @@ -309769,8 +309840,8 @@ - - + + @@ -309800,24 +309871,24 @@ genital labium - + - + - + MA - + FMA-abduced-lr @@ -309857,7 +309928,7 @@ - + One of the folds of skin which form the outer lips on both sides of the vaginal opening. FMA:20367 MA:0002844 @@ -309877,14 +309948,14 @@ labium majora http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png - + - + posterior labial commissure Wikipedia @@ -310597,7 +310668,7 @@ - + One of the two jaw ridges either on the roof of the mouth between the upper teeth and the hard palate or on the bottom of the mouth behind the lower teeth[WP]. The alveolar ridges contain the sockets (alveoli) of the teeth[HP]. in BTO, this is part of an embryo BTO:0001383 @@ -310620,14 +310691,14 @@ alveolar ridge - + - + PMID:19767574 Wikipedia @@ -310755,7 +310826,7 @@ - + Horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear. FMA:61024 NCIT:C32410 @@ -310769,14 +310840,14 @@ crus of ear - + - + Wikipedia-uncited @@ -310812,9 +310883,9 @@ - - - + + + Part of the cranium, the clivus is a shallow depression behind the dorsum sellC& that slopes obliquely backward. It forms a gradual sloping process at the anterior most portion of the basilar occipital bone at its junction with the sphenoid bone. On axial planes, it sits just posterior to the sphenoid sinuses. Just lateral to the clivus bilaterally is the foramen lacerum which contains the internal carotid artery, proximal to its anastamosis with the Circle of Willis. Posterior to the clivus is the basilar artery. The clivus supports the upper part of the pons. check relationships. FMA:75747 @@ -310834,15 +310905,15 @@ clivus of occipital bone http://upload.wikimedia.org/wikipedia/commons/c/c5/Clivus.png - + - + - + @@ -310855,19 +310926,19 @@ - + FMA - + HP:0010558 - + Wikipedia @@ -311208,7 +311279,7 @@ - + Small cavity surrounding the bones of the middle ear. BTO:0002098 EHDAA2:0004119 @@ -311228,7 +311299,7 @@ tympanic cavity http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png - + @@ -311241,7 +311312,7 @@ - + EHDAA2 @@ -311533,8 +311604,8 @@ - - + + An internal pocketing of pharyngeal endoderm that contacts a region of ectoderm (a pharyngeal cleft) and interdigitates in the anterior and posterior directions with the pharyngeal arches. Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits. Crump et al, 2004.[TAO] A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] @@ -311567,11 +311638,11 @@ The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389] pharyngeal pouch - + - + @@ -311584,13 +311655,13 @@ - + http://tolweb.org/Chordata/2499 - + EHDAA2 ZFA @@ -312158,8 +312229,8 @@ - - + + A myocardium trabecular layer that is part of a cardiac ventricle. TODO - check FMA FMA:83511 @@ -312173,24 +312244,24 @@ trabecular layer of ventricle - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -312234,8 +312305,8 @@ - - + + The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle. The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle.[TAO] EMAPA:37833 @@ -312251,24 +312322,24 @@ compact layer of ventricle - + - + - + ZFA - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -312317,9 +312388,9 @@ - - - + + + @@ -312352,34 +312423,34 @@ optic vesicle http://upload.wikimedia.org/wikipedia/commons/e/e0/Gray863.png - + - + - + - + ZFA - + GO-def - + ZFA @@ -312546,7 +312617,7 @@ - + The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]. TODO - check ZFA link. note this is part of medulla in ZFA, but we do not include this link here as it leads to inconsistencies EMAPA:35884 @@ -312567,7 +312638,7 @@ trigeminal sensory nucleus http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png - + @@ -312580,7 +312651,7 @@ - + MA @@ -312652,10 +312723,10 @@ - - - - + + + + In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]. TODO - ensure definition works across species. @@ -312672,44 +312743,44 @@ proximal tubule - + - + - + - + - + checkme - + multiple - + GO - + GO @@ -312769,7 +312840,7 @@ - + The intermediate tubule is a nephron tubule that lies between the proximal and distal tubules. TODO - check for applicability across species FMA:17718 @@ -312779,14 +312850,14 @@ UBERON:0004136 intermediate tubule - + - + FMA @@ -312907,8 +312978,8 @@ - - + + A specific region of the lateral mesoderm that will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle. this term denotes the primary heart field; GO:0003128 denotes the superclass of primary and secondary: specific region of the lateral mesoderm into the area which will form the primary beating heart tube[GO:0003138] XAO:0004185 @@ -312921,24 +312992,24 @@ UBERON:0004140 primary heart field - + - + - + GO:0003128 - + https://orcid.org/0000-0003-3308-6245 @@ -313001,7 +313072,7 @@ - + An epithelial tube that will give rise to the mature heart. the paired, longitudinal, endothelial-lined channels formed from the cardiogenic mesoderm in embryonic development; angiogenic cell clusters (aka angioblastic cords) located in a horse-shoe shape configuration in the cardiogenic plate coalesce to form the right and left endocardial heart tubes which then fuse in cephalo-caudal direction to form a single primitive heart tube. AAO:0010411 @@ -313021,14 +313092,14 @@ heart tube - + - + ZFA-modified @@ -313184,9 +313255,9 @@ - - - + + + The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles. the intraventricular conduction system from the bundle of His to the distal Purkinje fibers, which carries the impulse to the ventricles. HPS @@ -313197,15 +313268,15 @@ UBERON:0004146 His-Purkinje system - + - + - + @@ -313218,19 +313289,19 @@ - + GO-def - + GO - + PMID:12626327 PMID:21234997 github:michaelerice @@ -313375,7 +313446,7 @@ - + A heart valve located between the ventricle and bulbus arteriosus. TAO:0001375 ZFA:0001375 @@ -313384,14 +313455,14 @@ UBERON:0004149 ventriculo bulbo valve - + - + ZFA @@ -313468,7 +313539,7 @@ - + The bulbus arteriosus is an elastic heart chamber[GO]. Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches[ZFA]. A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000.[TAO] replaces conus arteriosis in cartilaginous fish @@ -313481,14 +313552,14 @@ bulbus arteriosus - + - + definitional @@ -313520,7 +313591,7 @@ - + Endocardial cushions project into the atrial canal, and, meeting in the middle line, unite to form the septum intermedium which divides the canal into two channels, the future right and left atrioventricular orifices[Gray's via WP]. SCTID:361468003 Wikipedia:Septum_intermedium @@ -313530,14 +313601,14 @@ ventricular septum intermedium http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray467.png - + - + Wikipedia @@ -313749,8 +313820,8 @@ - - + + An embryonic group of progenitor cells that forms from an outpouching of the septum transversum near the venous pole of the heart and gives rise to the epicardium. propepicardial Proepicardial clusters in Zebrafish form on the pericardial wall, adjacent to the atrioventricular (AV) junction and near the venous pole[ZFA] @@ -313762,24 +313833,24 @@ UBERON:0004160 proepicardium - + - + - + todo check other taxa - + ZFA @@ -313952,14 +314023,14 @@ - + - + @@ -313977,24 +314048,24 @@ UBERON:0004164 branchiomeric muscle - + - + - + ISBN:0073040584 - + PMID:21610022 @@ -314038,14 +314109,14 @@ - + . check ZFA structures superior reticular formation medial column & tegmentum uberon UBERON:0004166 superior reticular formation - + @@ -314058,7 +314129,7 @@ - + GO @@ -314075,8 +314146,8 @@ - - + + @@ -314108,11 +314179,11 @@ orbitofrontal cortex - + - + @@ -314125,14 +314196,14 @@ - + FMA MP - + GO MP @@ -314332,7 +314403,7 @@ - + The trigeminothalamic tract is one of the major routes of nociceptive and temperature signaling from the face. BAMS:tth BIRNLEX:4097 @@ -314346,14 +314417,14 @@ UBERON:0004171 trigeminothalamic tract - + - + GO @@ -314739,14 +314810,14 @@ - + - + A saclike structure of the prostate gland, comprised of at least three cell layers: an innermost layer of secretory columnar luminal epithelium, a middle layer of squamous basal epithelium that also contains neuroendocrine cells, transit amplifying cells, and stem cells, and an outer layer of smooth muscle intermixed with other stromal cells. the muscle layer is implicitly treated as outside the acinus Concurrent with branching morphogenesis, the solid cords of epithelium formed by budding arborize and differentiate postnatally into glandular acin. The basic prostate architecture is established by puberty and acquires secretory function thereafter[PMID:18977204] @@ -314757,11 +314828,11 @@ UBERON:0004179 prostate glandular acinus - + - + @@ -314774,13 +314845,13 @@ - + GO - + PMID:18977204 @@ -315321,14 +315392,14 @@ - + - + The Harderian gland is an anterior orbital gland usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]. @@ -315367,25 +315438,25 @@ Harderian gland - + - + - + some evidence suggests also endocrine PMID:7559104 - + PMID:7559104 @@ -315804,8 +315875,8 @@ - - + + The S1 portion is the initial portion of the proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]. UBERON:0006432 @@ -315821,24 +315892,24 @@ proximal convoluted tubule segment 1 - + - + - + GO - + GO @@ -315873,8 +315944,8 @@ - - + + The S2 portion of the tubule is involved in reabsorption of water and sodium chloride[GO]. UBERON:0006433 @@ -315890,24 +315961,24 @@ proximal convoluted tubule segment 2 - + - + - + GO - + GO @@ -315941,8 +316012,8 @@ - - + + The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron. EMAPA:27681 ZFA:0005588 @@ -315952,24 +316023,24 @@ comma-shaped body - + - + - + cjm - + ZFA @@ -315991,8 +316062,8 @@ - - + + The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron. TODO EMAPA:27756 @@ -316004,24 +316075,24 @@ S-shaped body - + - + - + cjm - + GO @@ -316528,21 +316599,21 @@ - + The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption. uberon prebend segment UBERON:0004207 prebend segment of loop of Henle - + - + GO @@ -316733,7 +316804,7 @@ - + @@ -316772,14 +316843,14 @@ glomerular capillary - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -317173,8 +317244,8 @@ - - + + A portion of smooth muscle tissue that is part of a large intestine [Automatically generated definition]. MA class may specifically mean muscle layer, but we treat as the sum of smooth muscle in both muscle layer and muscularis mucosa EMAPA:35469 @@ -317190,24 +317261,24 @@ UBERON:0004220 large intestine smooth muscle - + - + - + MA - + consider merging @@ -317287,7 +317358,7 @@ - + @@ -317324,14 +317395,14 @@ intestine smooth muscle - + - + consider merging @@ -319624,7 +319695,7 @@ - + A portion of smooth muscle tissue that is part of a small intestine [Automatically generated definition]. MA class may specifically mean muscle layer, but we treat as the sum of smooth muscle in both muscle layer and muscularis mucosa EMAPA:35783 @@ -319649,14 +319720,14 @@ small intestine smooth muscle - + - + consider merging @@ -320384,7 +320455,7 @@ - + A portion of smooth muscle tissue that is part of a prostate gland [Automatically generated definition]. BTO:0003159 EMAPA:35713 @@ -320411,14 +320482,14 @@ UBERON:0004243 prostate gland smooth muscle - + - + FMA @@ -321577,7 +321648,7 @@ - + Any muscle organ that is part of a hindlimb stylopod (upper leg)[Automatically generated definition]. UBERON:0000374 BTO:0001367 @@ -321593,14 +321664,14 @@ hindlimb stylopod muscle - + - + prolog @@ -321719,7 +321790,7 @@ - + Any muscle organ that is part of a forelimb zeugopod (lower arm)[Automatically generated definition]. EMAPA:32622 FMA:37371 @@ -321733,14 +321804,14 @@ UBERON:0004254 forelimb zeugopod muscle - + - + prolog @@ -321792,7 +321863,7 @@ - + Any muscle organ that is part of a forelimb stylopod (upper arm)[Automatically generated definition]. the FMA class 'muscle of arm' belongs here, do not move See notes on UBERON:0001460 for possible terminological confusion over term 'arm' @@ -321810,14 +321881,14 @@ forelimb stylopod muscle - + - + prolog @@ -321876,7 +321947,7 @@ - + Any muscle organ that is part of a hindlimb zeugopod (lower leg) [Automatically generated definition]. the FMA class 'muscle of leg' belongs here, do not move[cjm] See notes on UBERON:0000978 for possible terminological confusion over term 'leg' @@ -321892,14 +321963,14 @@ hindlimb zeugopod muscle - + - + prolog @@ -323353,7 +323424,7 @@ - + @@ -323369,14 +323440,14 @@ eye muscle - + - + MA @@ -323498,7 +323569,7 @@ - + The bilaminar epithelium formed from the myotome and dermatome. Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis. Within the dermomyotome there is also a medio-lateral difference. The central region makes dermis, the mesenchymal connective tissue of the back skin. The medial region (closest to neural tube) makes epaxial muscle, and the lateral region (furthest from neural tube) makes hypaxial muscle[http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=eurekah&part=A66768]. Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis.[TAO] @@ -323521,7 +323592,7 @@ UBERON:0004290 dermomyotome - + @@ -323540,7 +323611,7 @@ - + EHDAA2 ZFA @@ -323616,7 +323687,7 @@ - + @@ -323633,14 +323704,14 @@ UBERON:0004291 heart rudiment - + - + ZFA @@ -323791,8 +323862,8 @@ - - + + @@ -323810,24 +323881,24 @@ UBERON:0004293 parasympathetic nerve - + - + - + NCBIBook:NBK10065 - + NCBIBook:NBK10065 @@ -327909,7 +327980,7 @@ - + @@ -327942,14 +328013,14 @@ Terminology notes. we include calvarium as a synonym, but Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books (and HPO) state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria vault of skull - + - + small pharyngeal arch and sclerotomal contribution @@ -328008,11 +328079,11 @@ - - - - - + + + + + A membranous sac that develops from the posterior part of the alimentary canal in the embryos of mammals, birds, and reptiles, and it is important in the formation of the umbilical cord and placenta in mammals[VHOG]. A membranous sac that develops from the posterior part of the alimentary canal in the embryos of mammals, birds, and reptiles, and it is important in the formation of the umbilical cord and placenta in mammals. [TFD][VHOG] Structures homologous to the four extraembryonic membranes of reptiles and birds appear in mammals: amnion, chorion, yolk sac, and allantois.[well established][VHOG] @@ -328037,55 +328108,55 @@ allantois http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray25.png - + - + - + - + - + - + EHDAA2-modified - + Hymans - + Hymans - + hindgut diverticulum endoderm ISBN:0073040584 - + ISBN:0073040584 @@ -328140,7 +328211,7 @@ - + @@ -328175,7 +328246,7 @@ primitive streak http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray13.png - + @@ -328188,7 +328259,7 @@ - + EHDAA2 @@ -328327,14 +328398,14 @@ - + - + Outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the embryo's means of nutrition. distinction between trophectoderm and trophoblast unclear/inconsistent in many sources The outer cellular layer of the mammalian blastocyst. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.750, see_Kardong_KV][VHOG] @@ -328352,11 +328423,11 @@ trophectoderm - + - + @@ -328369,13 +328440,13 @@ - + EHDAA2 - + EHDAA2 @@ -328416,7 +328487,7 @@ - + @@ -328429,7 +328500,7 @@ - + @@ -328454,11 +328525,11 @@ gubernaculum (male or female) http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png - + - + @@ -328471,13 +328542,13 @@ - + BTO - + Wikipedia @@ -328550,7 +328621,7 @@ - + @@ -328578,14 +328649,14 @@ developmentally_induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm limb bud - + - + ISBN:9780878932504 @@ -329276,9 +329347,9 @@ - - - + + + The fibrous cord that connects the tip of the styloid process of the temporal bone to the lesser horn of the hyoid bone. FMA:72308 MA:0002957 @@ -329292,15 +329363,15 @@ stylohyoid ligament - + - + - + @@ -329313,19 +329384,19 @@ - + Wikipedia - + Wikipedia - + MP-implied-by-def @@ -329498,8 +329569,8 @@ - - + + @@ -329555,11 +329626,11 @@ pharyngeal arch artery http://upload.wikimedia.org/wikipedia/commons/8/84/Gray473.png - + - + @@ -329572,13 +329643,13 @@ - + ZFA - + abduced from EHDAA2 @@ -329836,7 +329907,7 @@ - + A transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]. Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization.[ZFIN] @@ -329866,14 +329937,14 @@ Descemet's membrane https://github.com/obophenotype/uberon/issues/15 - + - + Cline et al @@ -329950,7 +330021,7 @@ - + @@ -329979,14 +330050,14 @@ Reichert's cartilage - + - + EHDAA2 @@ -334462,7 +334533,7 @@ - + @@ -334491,7 +334562,7 @@ metacarpus region https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg - + @@ -334504,7 +334575,7 @@ - + PHENOSCAPE:ni @@ -336619,7 +336690,7 @@ - + A portion of cardiac muscle tissue that is part of a myocardium [Automatically generated definition]. Note placement of MA class based on parthood relationship EMAPA:32688 @@ -336630,14 +336701,14 @@ cardiac muscle tissue of myocardium - + - + MA @@ -337643,21 +337714,21 @@ - + A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]. FMA:84429 uberon UBERON:0004525 cardiac muscle tissue of trabecula carnea of right ventricle - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -337684,21 +337755,21 @@ - + A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]. FMA:84430 uberon UBERON:0004526 cardiac muscle tissue of trabecula carnea of left ventricle - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -338672,7 +338743,7 @@ - + Any of the series of white matter fiber tracts in the brain that run between the most lateral segment of the lentiform nucleus and the claustrum; the white matter of the external capsule contains fibers known as corticocortical association fibers which are responsible for connecting the cerebral cortex to another cortical area; the capsule appears as a thin white sheet of white matter and provides a route for cholinergic fibers from the basal forebrain to the cerebral cortex; it eventually joins the internal capsule around the lentiform nucleus. brain external capsule external capsule @@ -338698,14 +338769,14 @@ external capsule of telencephalon http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg - + - + FMA @@ -338752,7 +338823,7 @@ - + A zone of the ethmoid that is received into the ethmoidal notch of the frontal bone and roofs in the nasal cavities. [WP,modified]. BTO:0004141 EMAPA:19201 @@ -338770,14 +338841,14 @@ cribriform plate http://upload.wikimedia.org/wikipedia/commons/9/93/Gray149.png - + - + MA @@ -338991,7 +339062,7 @@ - + @@ -339029,7 +339100,7 @@ gastroesophageal sphincter - + @@ -339041,7 +339112,7 @@ - + MA @@ -339248,7 +339319,7 @@ - + A digital artery that is part of a forelimb [Automatically generated definition]. EMAPA:37210 MA:0001953 @@ -339260,14 +339331,14 @@ UBERON:0004553 forelimb digital artery - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -339355,7 +339426,7 @@ - + EMAPA:37229 FMA:22926 @@ -339371,14 +339442,14 @@ Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal. proper palmar digital vein - + - + FMA/obol @@ -339475,7 +339546,7 @@ - + A digital vein that is part of a forelimb. EMAPA:37223 MA:0002120 @@ -339487,14 +339558,14 @@ UBERON:0004563 forelimb digital vein - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -339541,7 +339612,7 @@ - + A digital vein that is part of a hindlimb [Automatically generated definition]. EMAPA:37224 MA:0002133 @@ -339552,14 +339623,14 @@ UBERON:0004564 hindlimb digital vein - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -339629,7 +339700,7 @@ - + @@ -339651,7 +339722,7 @@ arterial system - + @@ -339664,7 +339735,7 @@ - + EHDAA2 @@ -340516,7 +340587,7 @@ - + The third of the seven cervical vertebrae[ncit,modified]. under discussion: whether to generalize this beyond mammals, making it purely order-defined elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae @@ -340540,14 +340611,14 @@ mammalian cervical vertebra 3 - + - + FMA @@ -340606,7 +340677,7 @@ - + The fourth of the seven cervical vertebrae[ncit,modified]. elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae @@ -340627,14 +340698,14 @@ mammalian cervical vertebra 4 - + - + FMA @@ -340681,7 +340752,7 @@ - + The fifth of the seven cervical vertebrae[ncit,modified]. elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae @@ -340702,14 +340773,14 @@ mammalian cervical vertebra 5 - + - + FMA @@ -340756,7 +340827,7 @@ - + The sixth of the seven cervical vertebrae[ncit,modified]. elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae @@ -340777,14 +340848,14 @@ mammalian cervical vertebra 6 - + - + FMA @@ -340831,7 +340902,7 @@ - + Vertebra prominens is the proper name for the seventh cervical vertebra. The most distinctive characteristic of this vertebra is the existence of a long and prominent spinous process which is palpable from the skin surface, hence the name. This spinous process is thick, nearly horizontal in direction, not bifurcated, but terminating in a tubercle to which the lower end of the ligamentum nuchae is attached. The seventh cervical vertebra (C7) has the most prominent spinous process only in about 70% of people; in the remainder, either C6 or T1 (the first thoracic vertebra) will be the most prominent. The transverse processes are of considerable size, their posterior roots are large and prominent, while the anterior are small and faintly marked; the upper surface of each has usually a shallow sulcus for the eighth spinal nerve, and its extremity seldom presents more than a trace of bifurcation. The foramen transversarium may be as large as that in the other cervical vertebrae, but is generally smaller on one or both sides; occasionally it is double, sometimes it is absent. On the left side it occasionally gives passage to the vertebral artery; more frequently the vertebral vein traverses it on both sides; but the usual arrangement is for both artery and vein to pass in front of the transverse process, and not through the foramen. Sometimes the anterior root of the transverse process attains a large size and exists as a separate bone, which is known as a cervical rib. elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae @@ -340855,14 +340926,14 @@ mammalian cervical vertebra 7 - + - + FMA @@ -340983,7 +341054,7 @@ - + The second lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341002,14 +341073,14 @@ lumbar vertebra 2 - + - + FMA @@ -341050,7 +341121,7 @@ - + The third lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341069,14 +341140,14 @@ lumbar vertebra 3 - + - + FMA @@ -341111,7 +341182,7 @@ - + The fourth lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341129,14 +341200,14 @@ lumbar vertebra 4 - + - + FMA @@ -341171,7 +341242,7 @@ - + The fifth lumbar vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341190,14 +341261,14 @@ lumbar vertebra 5 - + - + FMA @@ -341500,7 +341571,7 @@ - + The second thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341519,14 +341590,14 @@ thoracic vertebra 2 - + - + FMA @@ -341567,7 +341638,7 @@ - + The third thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341586,14 +341657,14 @@ thoracic vertebra 3 - + - + FMA @@ -341634,7 +341705,7 @@ - + The fourth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341653,14 +341724,14 @@ thoracic vertebra 4 - + - + FMA @@ -341701,7 +341772,7 @@ - + The fifth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341720,14 +341791,14 @@ thoracic vertebra 5 - + - + FMA @@ -341768,7 +341839,7 @@ - + The sixth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341787,14 +341858,14 @@ thoracic vertebra 6 - + - + FMA @@ -341835,7 +341906,7 @@ - + The seventh thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341854,14 +341925,14 @@ thoracic vertebra 7 - + - + FMA @@ -341902,7 +341973,7 @@ - + The ninth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341921,14 +341992,14 @@ thoracic vertebra 9 - + - + FMA @@ -341969,7 +342040,7 @@ - + The tenth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -341988,14 +342059,14 @@ thoracic vertebra 10 - + - + FMA @@ -342036,7 +342107,7 @@ - + The eleventh thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -342055,14 +342126,14 @@ thoracic vertebra 11 - + - + FMA @@ -342103,7 +342174,7 @@ - + The twelfth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. elements are to be defined spatially/topologically @@ -342122,14 +342193,14 @@ thoracic vertebra 12 - + - + FMA @@ -342366,7 +342437,7 @@ - + @@ -342403,14 +342474,14 @@ renal afferent arteriole http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + Wikipedia @@ -342479,7 +342550,7 @@ - + @@ -342510,14 +342581,14 @@ renal efferent arteriole http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + Wikipedia @@ -342999,7 +343070,7 @@ - + @@ -343033,7 +343104,7 @@ liver lobule - + @@ -343046,7 +343117,7 @@ - + FMA MA @@ -343180,7 +343251,7 @@ - + @@ -343213,14 +343284,14 @@ sphenoid bone pterygoid process http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png - + - + FMA-abduced-lr @@ -343542,8 +343613,8 @@ - - + + The temporal process of the zygomatic bone, directed backward and medialward, is concave, presenting medially a rough, triangular area, for articulation with the maxilla, and laterally a smooth, concave surface, the upper part of which forms the anterior boundary of the temporal fossa, the lower a part of the infratemporal fossa. Near the center of this surface is the zygomaticotemporal foramen for the transmission of the zygomaticotemporal nerve. EMAPA:37807 @@ -343561,24 +343632,24 @@ temporal process of zygomatic bone http://upload.wikimedia.org/wikipedia/commons/d/da/Gray166.png - + - + - + MA - + MA @@ -343627,8 +343698,8 @@ - - + + The zygomatic process of the temporal bone is a long, arched process projecting from the lower part of the squamous portion of the temporal bone. It articulates with the zygomatic bone. This process is at first directed lateralward, its two surfaces looking upward and downward; it then appears as if twisted inward upon itself, and runs forward, its surfaces now looking medialward and lateralward. UBERON:0004653 EMAPA:19015 @@ -343646,24 +343717,24 @@ zygomatic process of temporal bone http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png - + - + - + MA - + MA @@ -344311,7 +344382,7 @@ - + @@ -344343,14 +344414,14 @@ interventricular septum membranous part - + - + Wikipedia @@ -344691,7 +344762,7 @@ - + The portion of the frontal lobe medial to the medial orbital gyrus is named the gyrus rectus (or straight gyrus), and is continuous with the superior frontal gyrus on the medial surface. A specific function for the gyrus rectus has not yet been elucidated. BAMS:GRe @@ -344713,7 +344784,7 @@ gyrus rectus - + @@ -344726,7 +344797,7 @@ - + FMA @@ -345252,8 +345323,8 @@ - - + + A triangular field that is a lateralward projection of the postero-lateral part of the anterior column[WP, modified by cjm]. TODO - check relationship to spinal cord lateral column. in FMA funiculus=white and horn=grep BIRNLEX:2666 @@ -345279,24 +345350,24 @@ spinal cord lateral horn http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray675.png - + - + - + FMA - + FMA-abduced-lr @@ -345776,8 +345847,8 @@ - - + + Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum. The columns (anterior pillars; fornicolumns) of the fornix arch downward in front of the interventricular foramen and behind the anterior commissure, and each descends through the gray substance in the lateral wall of the third ventricle to the base of the brain, where it ends in the corpus mammillare. [WP,unvetted][Wikipedia:Columns_of_fornix]. @@ -345806,25 +345877,25 @@ body of fornix http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png - + - + - + FMA NIF - + FMA @@ -346030,7 +346101,7 @@ - + A transitional zone between the presubiculum and the entorhinal area in the mouse (Paxinos-2001), the rat (Swanson-1998) and the primate (Zilles-1990). Defined on the basis of cytoarchitecture, it is more similar to the presubiculum than to the entorhinal area (Zilles-1990). (from Brain Info). @@ -346055,14 +346126,14 @@ UBERON:0004683 parasubiculum - + - + NIFSTD @@ -346126,8 +346197,8 @@ - - + + The raphe nuclei are thin plates of cells in and immediately adjacent to the sagittal plane. BAMS:RA EMAPA:35721 @@ -346156,25 +346227,25 @@ raphe nuclei http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png - + - + - + GO Wikipedia - + Wikipedia @@ -346277,7 +346348,7 @@ - + @@ -346290,7 +346361,7 @@ - + @@ -346318,11 +346389,11 @@ gastro-splenic ligament http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1039.png - + - + @@ -346335,14 +346406,14 @@ - + FMA Wikipedia - + MA-modified Wikipedia @@ -346399,8 +346470,8 @@ - - + + @@ -346432,11 +346503,11 @@ Multiple sources support greater omentum assignment. E.g. http://medical-dictionary.thefreedictionary.com/splenorenal+ligament. We change the MA part_of assignment to develops_from lieno-renal ligament - + - + @@ -346449,13 +346520,13 @@ - + FMA - + MA-modified @@ -346590,8 +346661,8 @@ - - + + The nasofrontal vein is a vein in the eye which drains to the superior ophthalmic vein. EMAPA:37227 @@ -346605,24 +346676,24 @@ naso-frontal vein - + - + - + FMA/obol - + FMA/obol @@ -346650,7 +346721,7 @@ - + A vein running parallel to the superior and inferior pancreatico-duodenal arteries that drains blood from the pancreas and duodenum into the superior mesenteric or portal veins. EMAPA:37177 FMA:15398 @@ -346668,14 +346739,14 @@ UBERON:0004690 pancreaticoduodenal vein - + - + FMA/obol @@ -347583,7 +347654,7 @@ - + @@ -347614,7 +347685,7 @@ - + @@ -347637,11 +347708,11 @@ paired limb/fin - + - + @@ -347654,13 +347725,13 @@ - + VSAO - + definitional @@ -347735,7 +347806,7 @@ - + @@ -347757,14 +347828,14 @@ pelvic appendage - + - + definitional @@ -347826,7 +347897,7 @@ - + @@ -347850,14 +347921,14 @@ pectoral appendage - + - + definitional @@ -348704,7 +348775,7 @@ - + @@ -348774,14 +348845,14 @@ cerebellar vermis http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png - + - + ABA @@ -348867,7 +348938,7 @@ - + @@ -348892,14 +348963,14 @@ crista ampullaris http://upload.wikimedia.org/wikipedia/commons/e/ec/Semicircular_canal_-_ampulla.png - + - + MA @@ -349155,7 +349226,7 @@ - + @@ -349199,14 +349270,14 @@ piriform cortex http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG - + - + Wikipedia @@ -350082,8 +350153,8 @@ - - + + @@ -350098,25 +350169,25 @@ UBERON:0004737 metanephric collecting duct - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + Wikipedia-abduced @@ -350148,21 +350219,21 @@ - + Juxtaglomerular apparatus of the mature vertebrate kidney, or metanephros. juxtaglomerular apparatus of metanephros uberon UBERON:0004738 metanephric juxtaglomerular apparatus - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -350189,7 +350260,7 @@ - + The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment. a glomus differs from a glomerulus in that each vascular glomus services several tubules Paired highly vascularized portion of the pronephros. Left and right glomeruli are fused at the midline. Begins to function between 40 and 48hpf. Drummond, 2000.[TAO] @@ -350213,14 +350284,14 @@ UBERON:0004739 pronephric glomerulus - + - + XAO @@ -350408,7 +350479,7 @@ - + Dermal bone on the margin of the scapula. The cleithrum is attached to the skull in fishes, but free from the latter in amphibians and disappears early in the evolution of reptiles. Dermal bone that articulates dorsally with the supracleithrum and ventro-medially with the scapula and coracoid and mesocoracoid bone when the last bone is present. With the posttemporal and supracleithrum, the cleithrum supports the primary pectoral girdle. The cleithrum is located immediately behind the branchial cavity.[TAO] @@ -350429,7 +350500,7 @@ cleithrum - + @@ -350443,7 +350514,7 @@ - + ZFA @@ -350520,16 +350591,16 @@ - - + + - - + + The dentary is a dermal bone that forms the antero-lateral part of the lower jaw in fishes and amphibians, extending to the whole lower jaw in mammals[VHOG,modified]. Dermal bone that is usually the anteriormost bone of the lower jaw, and that articulates with the angular, or anguloarticular bone, posteriorly, and carries part of the mandibular sensory canal and pore openings of the mandibular sensory canal on its lateral surface. The dentary is a paired bone.[TAO] Ossified element of intramembranous origin that invests the lateral margin of Meckel's cartilage thereby forming the lateral side of the mandible in anurans and salamanders (Duellman & Trueb, 1994:293). In caecilians, the dentary is part of a compound bone termed the pseudodentary.[AAO] @@ -350553,19 +350624,19 @@ dentary - + - + - + - + @@ -350578,7 +350649,7 @@ - + mandibular series ISBN:0073040584 ZFA @@ -350586,19 +350657,19 @@ - + VHOG - + EHDAA2 - + EHDAA2-modified @@ -350690,7 +350761,7 @@ - + @@ -350725,7 +350796,7 @@ UBERON:0004743 coracoid bone - + @@ -350738,7 +350809,7 @@ - + VSAO @@ -350859,9 +350930,9 @@ - - - + + + . TODO - resolve part_of relationships Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired.[TAO] @@ -350891,15 +350962,15 @@ articular/anguloarticular - + - + - + @@ -350918,20 +350989,20 @@ - + AAO - + ZFA-modifed cjm - + ZFA @@ -351061,11 +351132,11 @@ - - - - - + + + + + A tooth- or denticle-covered plate which is attached to the sphenoid stem[Palaeos]. Azygous, dermal bone of intramembranous origin that underlies the ventral surface of the braincase in anurans and salamanders. In caecilians, the parasphenoid and other bones are fused to form the Os basale.[AAO] Dermal bone that forms part of the base of the skull and the lateral walls of the braincase through its ascending processes. It may articulate with the vomer anteriorly, the prootics and exoccipitals laterally, and the basioccipital posteriorly. The parasphenoid is an elongate median bone.[TAO] @@ -351083,55 +351154,55 @@ UBERON:0004745 parasphenoid - + - + - + - + - + - + ZFA - + ZFA - + ZFA - + palatal series ISBN:0073040584 - + ZFA-modified @@ -351219,7 +351290,7 @@ - + @@ -351257,14 +351328,14 @@ prootic bone - + - + ISBN:0073040584 @@ -351373,7 +351444,7 @@ - + @@ -351401,14 +351472,14 @@ supraoccipital bone - + - + TAO @@ -351655,10 +351726,10 @@ - - - - + + + + Paired element that articulates anterioly with the basihyal and posteriorly with the ceratohyal hypohyals.[AAO] Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly.[TAO] relationship loss: part_of hyoid apparatus skeleton (AAO:0000682)[AAO] @@ -351670,19 +351741,19 @@ UBERON:0004751 hypohyal bone - + - + - + - + @@ -351695,25 +351766,25 @@ - + AAO - + TAO - + TAO - + TAO @@ -351756,8 +351827,8 @@ - - + + The dorsal component of the mandibular arch. Column of catilage, remnant in the adult of the larval palatoquadrate cartilage, that is located lateral or antero-lateral to the auditory capsule.[AAO] AAO:0000379 @@ -351772,11 +351843,11 @@ UBERON:0004752 palatoquadrate cartilage - + - + @@ -351789,13 +351860,13 @@ - + AAO - + ZFA @@ -351845,7 +351916,7 @@ - + Skeletal element that consists of the scapula and the coracoid[VSAO, modified]. todo - decide whether to create separate classes for cartilage & ossified. Wikipedia considers this absent in Therians, but if considered as a grouping of scapula and coracoid then it would be present Fused, ossified portions of the scapula, procoracoid, and coracoid.[AAO] @@ -351866,14 +351937,14 @@ UBERON:0004753 scapulocoracoid - + - + VSAO @@ -352052,7 +352123,7 @@ - + A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO]. A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO] EMAPA:37744 @@ -352066,7 +352137,7 @@ Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates. Editors notes: TODO - develops_from skeletal tissue - + @@ -352079,7 +352150,7 @@ - + 2012-08-14 VSAO:0000015 VSAO @@ -352380,7 +352451,7 @@ - + The primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]. in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain) AAO:0000094 @@ -352402,7 +352473,7 @@ UBERON:0004761 cartilaginous neurocranium - + @@ -352415,7 +352486,7 @@ - + PMC1571569 @@ -352570,7 +352641,7 @@ - + Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles. Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO] Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO] @@ -352586,14 +352657,14 @@ skeletal element - + - + VSAO @@ -352737,7 +352808,7 @@ - + Any bone that is part of the lower jaw skeleton. This includes (when present): the dentary/mandible, the articular, the splenial, the suprangular. Do not manually classify under here - bones are automatically classified lower jaw bone @@ -352746,14 +352817,14 @@ bone of lower jaw - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -352824,7 +352895,7 @@ - + @@ -352857,14 +352928,14 @@ UBERON:0004770 articular system - + - + FMA @@ -353033,8 +353104,8 @@ - - + + @@ -353065,11 +353136,11 @@ eyelid tarsus - + - + @@ -353082,13 +353153,13 @@ - + FMA - + cjm @@ -353612,7 +353683,7 @@ - + A lamina propria that is part of a respiratory system [Automatically generated definition]. EMAPA:37576 MA:0001821 @@ -353627,14 +353698,14 @@ UBERON:0004779 respiratory system lamina propria - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -353709,7 +353780,7 @@ - + A lamina propria that is part of a gastrointestinal system. MA:0001899 NCIT:C49299 @@ -353718,14 +353789,14 @@ UBERON:0004780 gastrointestinal system lamina propria - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -353758,7 +353829,7 @@ - + A lamina propria that is part of a gallbladder [Automatically generated definition]. EMAPA:35371 FMA:278594 @@ -353777,14 +353848,14 @@ UBERON:0004781 gallbladder lamina propria - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -354349,10 +354420,10 @@ - - - - + + + + A mucosa that is part of a gastrointestinal system. BTO:0000546 BTO:0005568 @@ -354368,44 +354439,44 @@ The gut mucosa of amphioxus has insulin-secreting cells. http://www.ncbi.nlm.nih.gov/pubmed/16417468 gastrointestinal system mucosa - + - + - + - + - + PMID:16417468 - + PMID:16417468 - + PMID:16417468 - + BTO-modified @@ -354801,7 +354872,7 @@ - + @@ -354824,14 +354895,14 @@ thymus trabecula - + - + MA @@ -357204,8 +357275,8 @@ - - + + @@ -357237,11 +357308,11 @@ pulmonary alveolus epithelium - + - + @@ -357254,13 +357325,13 @@ - + FMA - + FMA @@ -358106,8 +358177,8 @@ - - + + @@ -358134,25 +358205,25 @@ respiratory system arterial endothelium - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -358256,7 +358327,7 @@ - + An endothelium of vein that is part of a respiratory system [Automatically generated definition]. EMAPA:37585 @@ -358277,14 +358348,14 @@ respiratory system venous endothelium - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -359189,10 +359260,10 @@ - - - - + + + + Dermal bone that covers the otic region and may articulate with its antimere medially, with the frontal bone anteriorly, the pterotic laterally, the supraoccipital medio-posteriorly, and the epiotic and extrascapula latero-posteriorly. The parietal is a paired bone.[TAO]. Dermal bone that covers the otic region and may articulate with its antimere medially, with the frontal bone anteriorly, the pterotic laterally, the supraoccipital medio-posteriorly, and the epiotic and extrascapula latero-posteriorly. The parietal is a paired bone.[TAO] relationship loss: overlaps frontal-parietal joint (TAO:0005255)[TAO] @@ -359213,44 +359284,44 @@ UBERON:0004865 actinopterygian parietal bone - + - + - + - + - + ZFA - + ZFA - + ZFA - + PMID:11523816 @@ -359353,10 +359424,10 @@ - - - - + + + + Dermal bone that bears part of the supraorbital canal and usually covers a large area of the neurocranium occupying part of the ethmoidal, orbitosphenoid, and otic regions. Commonly, the frontal bone articulates with its antimere medially, with lateral ethmoid, orbitosphenoid and pterosphenoid ventrolaterally, with supraorbital bone(s), autosphenotic and pterotic laterally, and with parietal posteriorly.[TAO]. Dermal bone that bears part of the supraorbital canal and usually covers a large area of the neurocranium occupying part of the ethmoidal, orbitosphenoid, and otic regions. Commonly, the frontal bone articulates with its antimere medially, with lateral ethmoid, orbitosphenoid and pterosphenoid ventrolaterally, with supraorbital bone(s), autosphenotic and pterotic laterally, and with parietal posteriorly.[TAO] relationship loss: overlaps frontal-parietal joint (TAO:0005255)[TAO] @@ -359377,19 +359448,19 @@ UBERON:0004866 actinopterygian frontal bone - + - + - + - + @@ -359402,25 +359473,25 @@ - + ZFA - + ZFA - + PMID:11523816 - + ZFA-modified @@ -359618,7 +359689,7 @@ - + A part of the epithalamus present in some animal species. The eye may be photoreceptive and is usually associated with the pineal gland, regulating circadian rhythmicity and hormone production for thermoregulation. The parietal eye is a part of the epithalamus, which can be divided into two major parts; the epiphysis (the pineal organ, or pineal gland if mostly endocrine) and the parietal organ (often called the parietal eye, or third eye if it is photoreceptive). It arises as an anterior evagination of the pineal organ or as a separate outgrowth of the roof of the diencephalon. In some species, it protrudes through the skull.[4] The parietal eye uses a different biochemical method of detecting light than rod cells or cone cells in a normal vertebrate eye[WP]. @@ -359629,7 +359700,7 @@ UBERON:0004869 parietal organ - + @@ -359642,7 +359713,7 @@ - + cjm @@ -359858,7 +359929,7 @@ - + @@ -359881,14 +359952,14 @@ splanchnopleure http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png - + - + EHDAA2 @@ -359922,7 +359993,7 @@ - + @@ -359945,14 +360016,14 @@ somatopleure http://upload.wikimedia.org/wikipedia/commons/2/28/Gray16.png - + - + EHDAA2 @@ -360030,9 +360101,9 @@ - - - + + + @@ -360053,34 +360124,34 @@ urogenital fold - + - + - + - + EHDAA2 - + Wikipedia - + EHDAA2 @@ -361226,7 +361297,7 @@ - + The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra. we follow EHDAA2 in dividing the UGS into epithelium and lumen EHDAA2:0004061 @@ -361237,7 +361308,7 @@ UBERON:0004902 urogenital sinus epithelium - + @@ -361250,7 +361321,7 @@ - + EHDAA2 @@ -361712,9 +361783,9 @@ - - - + + + EHDAA2:0000171 EMAPA:16561 EMAPA_RETIRED:16565 @@ -361725,15 +361796,15 @@ biliary bud http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png - + - + - + @@ -361746,19 +361817,19 @@ - + EHDAA2 - + EMAPA - + EHDAA2-modified @@ -362096,8 +362167,8 @@ - - + + A urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]. FMA:45769 SCTID:277856008 @@ -362116,25 +362187,25 @@ internal urethral sphincter http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray407.png - + - + - + Sympathetics from L1-L2 through lumbar splanchnic and hypogastric/pelvic plexus dbpedia - + Sympathetics from L1-L2 through lumbar splanchnic and hypogastric/pelvic plexus dbpedia @@ -362200,8 +362271,8 @@ - - + + . EMAPA:37790 FMA:85274 @@ -362223,25 +362294,25 @@ http://upload.wikimedia.org/wikipedia/commons/7/70/Gray1166.png http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png - + - + - + Junction of the inferior rami of the pubis and ischium to the extent of 1.25 to 2 cm. dbpedia - + Junction of the inferior rami of the pubis and ischium to the extent of 1.25 to 2 cm. dbpedia @@ -362390,7 +362461,7 @@ - + @@ -362443,14 +362514,14 @@ postnatal subventricular zone - + - + GO @@ -363688,7 +363759,7 @@ - + The submucous layer of the wall of the urinary bladder. BTO:0002117 @@ -363707,14 +363778,14 @@ submucosa of urinary bladder - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -364411,7 +364482,7 @@ - + A mucosa that is part of a ureter [Automatically generated definition]. FMA:15894 SCTID:40476001 @@ -364432,14 +364503,14 @@ UBERON:0004980 mucosa of ureter - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -366863,7 +366934,7 @@ - + A mucosa that is part of a pyloric antrum [Automatically generated definition]. BTO:0004107 FMA:17055 @@ -366896,14 +366967,14 @@ UBERON:0004997 mucosa of pyloric antrum - + - + BTO @@ -374299,7 +374370,7 @@ - + @@ -374323,7 +374394,7 @@ gizzard - + @@ -374336,7 +374407,7 @@ - + Wikipedia @@ -374447,7 +374518,7 @@ - + A nerve cord in the dorsal mid-line that is the most prominent nerve cord. BTO:0002329 @@ -374458,14 +374529,14 @@ UBERON:0005054 primary dorsal nerve cord - + - + http://tolweb.org/Chordata/2499 @@ -374819,31 +374890,31 @@ - - + + . uberon UBERON:0005063 left ventricular compact myocardium - + - + - + GO - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -374870,20 +374941,20 @@ - + . uberon UBERON:0005064 left ventricular trabecular myocardium - + - + GO @@ -374909,31 +374980,31 @@ - - + + . uberon UBERON:0005065 right ventricular compact myocardium - + - + - + GO - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -374960,20 +375031,20 @@ - + . uberon UBERON:0005066 right ventricular trabecular myocardium - + - + GO @@ -375254,7 +375325,7 @@ - + An anatomical boundary that adjacent_to a forebrain and adjacent_to a midbrain. The boundary between the diencephalon and the mesencephalon.[TAO] relationship loss: develops_from forebrain midbrain boundary neural tube (TAO:0007040)[TAO] @@ -375268,14 +375339,14 @@ UBERON:0005075 forebrain-midbrain boundary - + - + definitional @@ -375670,7 +375741,7 @@ - + A bud-like thickening in the epidermis consisting of elongated keratinocytes, which at the distal end are in touch with numerous aggregated specialized dermal fibroblasts, the dermal condensate. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud[GO]. EMAPA:36479 @@ -375683,14 +375754,14 @@ UBERON:0005086 hair follicle placode - + - + Wikipathways:WP2062 @@ -375747,7 +375818,7 @@ - + An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud[GO]. Placode that develops into a tooth. The placode is a thickening of the pharyngeal epithelium.[TAO] In mammals this may be located in the alveolar ridges, but note that some species such as zebrafish have ceratobranchial teeth. Sharks have dermal denticles that share developmental origins. Currently we don't include location information due to this diversity, but in future we may include specific subclasses and/or taxon GCIs. @@ -375765,7 +375836,7 @@ UBERON:0005087 tooth placode - + @@ -375778,7 +375849,7 @@ - + check for other species Wikipedia:Tooth_development @@ -375851,14 +375922,14 @@ - + A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud[GO]. TODO - add bud uberon UBERON:0005088 sebaceous gland placode - + @@ -375871,7 +375942,7 @@ - + Wikipathways:WP2062 @@ -375898,14 +375969,14 @@ - + An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud[GO]. TODO - add bud uberon UBERON:0005089 sweat gland placode - + @@ -375918,7 +375989,7 @@ - + Wikipathways:WP2062 @@ -376168,7 +376239,7 @@ - + . class added for consistency with GO - consider merging with kidney mesenchyme. uberon @@ -376176,14 +376247,14 @@ UBERON:0005095 kidney rudiment - + - + GO @@ -376304,7 +376375,7 @@ - + The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct[GO]. BTO:0004539 @@ -376322,14 +376393,14 @@ renal connecting tubule http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + Wikipedia @@ -376729,8 +376800,8 @@ - - + + A metanephric nephron is the functional unit of the metanephros[GO]. The primitive form of the vertebrate nephron consists of a vascular filtration surface overlain with podocytes, a specialized coelomic cavity to receive the ultrafiltrate, and a tubule for modification to final urine. Although previously thought to be unique to the vertebrates, this design is now known to be widespread among invertebrates, including most of the protochordates, and especially their larvae.[well established][VHOG] UBERON:0005142 @@ -376739,25 +376810,25 @@ UBERON:0005110 metanephric nephron - + - + - + Wikipedia Wikipedia:Nephron - + Bgee:AN @@ -376821,20 +376892,20 @@ - + EHDAA2:0001140 uberon UBERON:0005113 metanephric cortex mesenchyme - + - + EHDAA2 @@ -376854,20 +376925,20 @@ - + The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent[GO]. uberon UBERON:0005114 metanephric ascending thin limb - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -376893,32 +376964,32 @@ - - + + The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]. uberon UBERON:0005115 metanephric cortical collecting duct - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -376945,20 +377016,20 @@ - + It extends to the tip of the metanephric loop of Henle[GO]. uberon UBERON:0005116 metanephric descending thin limb - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -376985,32 +377056,32 @@ - - + + The metanephric distal convoluted tubule is a portion of the metanephric nephron tubule that connects the metanephric loop of Henle to the collecting duct[GO]. VHOG:0001569 uberon UBERON:0005117 metanephric distal convoluted tubule - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377037,32 +377108,32 @@ - - + + The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive[GO]. uberon UBERON:0005118 metanephric early distal convoluted tubule - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377088,20 +377159,20 @@ - + The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]. uberon UBERON:0005119 metanephric glomerular mesangium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377128,32 +377199,32 @@ - - + + The metanephric late distal convoluted tubule contains metanephric DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]. uberon UBERON:0005120 metanephric late distal convoluted tubule - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377207,20 +377278,20 @@ - + The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus[GO]. uberon UBERON:0005122 metanephric macula densa - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377247,20 +377318,20 @@ - + The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]. uberon UBERON:0005123 metanephric prebend segment - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377287,32 +377358,32 @@ - - + + The metanephric proximal convoluted tubule is the most proximal portion of the metanephric proximal tubule and extends from the metanephric glomerular capsule to the metanephric proximal straight tubule[GO]. VHOG:0001570 uberon UBERON:0005124 metanephric proximal convoluted tubule - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377339,44 +377410,44 @@ - - - + + + The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule[GO]. TODO - place mammalian xrefs here rather than at parent uberon UBERON:0005125 metanephric proximal straight tubule - + - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377402,20 +377473,20 @@ - + The S1 portion is the initial portion of the metanephric proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]. uberon UBERON:0005126 metanephric S1 - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377442,20 +377513,20 @@ - + At the macula densa, the thick ascending limb connects to the distal convoluted tubule[GO]. uberon UBERON:0005127 metanephric thick ascending limb - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377491,21 +377562,21 @@ - + The metanephric distal tubule is a metanephric nephron tubule that begins at the metanephric macula densa and extends to the metanephric connecting tubule[GO]. UBERON:0005150 uberon UBERON:0005129 metanephric distal tubule - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377537,20 +377608,20 @@ - + The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros[GO]. uberon UBERON:0005130 metanephric loop of Henle - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377614,21 +377685,21 @@ - + The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]. UBERON:0005143 uberon UBERON:0005133 metanephric glomerulus vasculature - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377655,20 +377726,20 @@ - + The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros[GO]. uberon UBERON:0005134 metanephric nephron epithelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377695,32 +377766,32 @@ - - + + A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros[GO]. uberon UBERON:0005135 metanephric glomerular epithelium - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377746,43 +377817,43 @@ - - - + + + The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros[GO]. uberon UBERON:0005136 metanephric glomerular endothelium - + - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377838,19 +377909,19 @@ - + uberon UBERON:0005139 metanephric long descending thin limb - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377899,20 +377970,20 @@ - + The metanephric short descending thin limb is the descending thin limb of a short nephron in the metanephros that has a squamous epithelial morphology[GO]. uberon UBERON:0005141 metanephric short descending thin limb - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -377959,32 +378030,32 @@ - - + + This process pertains to the initial formation of a structure from unspecified parts[GO]. uberon UBERON:0005144 metanephric glomerular capillary - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -378038,8 +378109,8 @@ - - + + A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros[GO]. UBERON:0005128 UBERON:0005152 @@ -378047,25 +378118,25 @@ UBERON:0005146 metanephric nephron tubule - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + ISBN:9780878932504 @@ -378091,7 +378162,7 @@ - + @@ -378107,14 +378178,14 @@ UBERON:0005147 metanephric renal vesicle - + - + EHDAA2 @@ -378140,20 +378211,20 @@ - + The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]. uberon UBERON:0005148 metanephric S-shaped body - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -378180,20 +378251,20 @@ - + The metanephric connecting tubule is a tubular segment of the metanephric nephron; it connects the distal convoluted tubule to the collecting duct in the metanephros[GO]. uberon UBERON:0005149 metanephric connecting tubule - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -378229,32 +378300,32 @@ - - + + The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology[GO]. UBERON:0005131 uberon UBERON:0005151 metanephric proximal tubule - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -378588,7 +378659,7 @@ - + Pelvic spurs are the externally visible portion of the vestigial remnants of legs found on each side of the vent in primitive snakes, such as boas and pythons. The remnants of a pelvis and femur, which have no connection with the spine, simply 'float' in the muscle mass. The femur protrudes from the snake's body and is covered by a corneal spur, which resembles a claw. Males' spurs are generally longer and more pointed than females', and are used for clasping and tickling during courtship and mating, as well as combat with other males in some species. this class refers to the external portion and its corneal covering rather than the combined pelvis plus femur. Wikipedia:Pelvic_spur @@ -378598,14 +378669,14 @@ UBERON:0005161 pelvic spur - + - + Wikipedia @@ -379750,8 +379821,8 @@ - - + + An artery in males that provides blood to the vas deferens. The artery usually arises from the anterior trunk of the superior vesical artery. It accompanies the vas deferens into the testis, where it anastomoses with the testicular artery. In this way it also supplies blood to the testis and epididymis. A small branch supplies the ureter[WP]. EMAPA:37513 @@ -379768,24 +379839,24 @@ deferent duct artery - + - + - + FMA - + Wikipedia @@ -379840,7 +379911,7 @@ - + One of: anterior or posterior ethmoidal arteries. EMAPA:37081 MA:0001949 @@ -379854,7 +379925,7 @@ ethmoidal artery - + @@ -379867,7 +379938,7 @@ - + FMA-abduced @@ -379986,7 +380057,7 @@ - + @@ -380009,14 +380080,14 @@ spleen germinal center - + - + CL:tm @@ -380057,8 +380128,8 @@ - - + + TODO - check EHDAA:3778 EMAPA:16990 @@ -380070,11 +380141,11 @@ UBERON:0005197 segmental spinal nerve - + - + @@ -380087,13 +380158,13 @@ - + EHDAA2 - + EHDAA2 @@ -380160,7 +380231,7 @@ - + A lactiferous gland that is located in the thoracic region/breast. Most primates have one pair of mammary glands, which are thoracic. @@ -380180,14 +380251,14 @@ thoracic mammary gland - + - + BTO @@ -380248,8 +380319,8 @@ - - + + A macula densa that is part of an ascending limb of loop of Henle [Automatically generated definition]. TODO - unify terminology - check DST = TAL? Note EMAPA class appears to refer to this segment EMAPA:28399 @@ -380258,24 +380329,24 @@ UBERON:0005202 distal straight tubule macula densa - + - + - + MA - + MA @@ -380590,7 +380661,7 @@ - + @@ -380612,14 +380683,14 @@ UBERON:0005211 renal medulla interstitium - + - + MA @@ -380752,8 +380823,8 @@ - - + + A portion of interstitial tissue that is part of a outer medulla of kidney [Automatically generated definition]. EMAPA:28337 MA:0002621 @@ -380763,24 +380834,24 @@ UBERON:0005213 outer renal medulla interstitium - + - + - + MA - + MA @@ -380818,8 +380889,8 @@ - - + + A portion of interstitial tissue that is part of a inner medulla of kidney [Automatically generated definition]. EMAPA:28364 MA:0002620 @@ -380830,24 +380901,24 @@ UBERON:0005214 inner renal medulla interstitium - + - + - + MA - + MA @@ -380981,7 +381052,7 @@ - + An external ectoderm that is part of a optic eminence [Automatically generated definition]. EMAPA:16539 RETIRED_EHDAA2:0001311 @@ -380990,14 +381061,14 @@ UBERON:0005216 optic eminence surface ectoderm - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -381349,7 +381420,7 @@ - + An epithelium that is part of a hindlimb stylopod [Automatically generated definition]. EHDAA2:0002131 EMAPA:17500 @@ -381358,14 +381429,14 @@ UBERON:0005225 upper leg epithelium - + - + EHDAA2 @@ -381392,7 +381463,7 @@ - + An epithelium that is part of a toe [Automatically generated definition]. EMAPA:32946 VHOG:0001031 @@ -381403,7 +381474,7 @@ UBERON:0005226 pedal digit epithelium - + @@ -381416,7 +381487,7 @@ - + EHDAA2 @@ -381457,7 +381528,7 @@ - + An epithelium that is part of a finger [Automatically generated definition]. EHDAA2:0000406 EMAPA:32647 @@ -381469,14 +381540,14 @@ UBERON:0005227 manual digit epithelium - + - + EHDAA2 @@ -381516,7 +381587,7 @@ - + An epithelium that is part of a forelimb stylopod [Automatically generated definition]. EHDAA2:0002113 EMAPA:17425 @@ -381525,14 +381596,14 @@ UBERON:0005228 upper arm epithelium - + - + EHDAA2 @@ -381558,7 +381629,7 @@ - + An epithelium that is part of a lower leg [Automatically generated definition]. EHDAA2:0001031 EMAPA:17497 @@ -381567,14 +381638,14 @@ UBERON:0005229 lower leg epithelium - + - + EHDAA2 @@ -381633,7 +381704,7 @@ - + An ectoderm that is part of a medial nasal prominence [Automatically generated definition]. EHDAA2:0001078 EMAPA:16809 @@ -381643,7 +381714,7 @@ UBERON:0005233 medial-nasal process ectoderm - + @@ -381656,7 +381727,7 @@ - + EHDAA2 @@ -382338,7 +382409,7 @@ - + An anatomical cavity that is part of a lesser sac [Automatically generated definition]. EHDAA2:0004558 EMAPA:18461 @@ -382354,14 +382425,14 @@ UBERON:0005252 lesser sac cavity - + - + EHDAA2 @@ -382423,7 +382494,7 @@ - + Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells. Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. (Source: BioGlossary, www.Biology-Text.com)[TAO] EFO:0003492 @@ -382445,14 +382516,14 @@ head mesenchyme - + - + EHDAA2 @@ -382538,7 +382609,7 @@ - + Mesenchyme that is part of a developing toe [Automatically generated definition]. EMAPA:32947 VHOG:0000463 @@ -382551,14 +382622,14 @@ UBERON:0005255 pedal digit mesenchyme - + - + EHDAA2 @@ -382614,7 +382685,7 @@ - + Mesenchyme that is part of a developing trunk. EFO:0003485 EHDAA2:0002092 @@ -382630,14 +382701,14 @@ trunk mesenchyme - + - + EHDAA2 @@ -382985,7 +383056,7 @@ - + @@ -383003,14 +383074,14 @@ renal cortex artery - + - + MA @@ -383054,7 +383125,7 @@ - + @@ -383071,14 +383142,14 @@ renal cortex vein - + - + MA @@ -383116,8 +383187,8 @@ - - + + @@ -383143,24 +383214,24 @@ UBERON:0005270 renal cortex interstitium - + - + - + MA - + MA @@ -383194,7 +383265,7 @@ - + The part of the renal cortex nearest to the medulla. EMAPA:37623 @@ -383209,14 +383280,14 @@ juxtamedullary cortex - + - + FMA KUPO @@ -383263,7 +383334,7 @@ - + The tiny blood vessels that receive blood from the efferent arterioles of the glomerulus, and interact with superficial cortical nephrons allowing reabsorption and secretion between blood and the inner lumen of the nephron; peritubular capillaries are situated around the tubule and are at low pressure. EMAPA:36558 @@ -383275,14 +383346,14 @@ peritubular capillary - + - + Wikipedia @@ -383299,7 +383370,7 @@ - + @@ -383330,14 +383401,14 @@ nail bed - + - + MA @@ -383353,21 +383424,21 @@ - + EMAPA:37509 MA:0002709 uberon UBERON:0005274 proximal nail bed - + - + MA @@ -383737,7 +383808,7 @@ - + @@ -383766,14 +383837,14 @@ tela choroidea - + - + FMA @@ -384133,7 +384204,7 @@ - + The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]. The posterior of the two brain vesicles formed by specialization of the rhombencephalon in the developing embryo, it comprises the medulla oblongata. [TFD][VHOG] @@ -384158,14 +384229,14 @@ myelencephalon http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg - + - + definitional @@ -384575,7 +384646,7 @@ - + The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]. TODO - check primary vs testis EHDAA2:0002011 @@ -384592,14 +384663,14 @@ testis sex cord - + - + Bgee:AN @@ -384760,7 +384831,7 @@ - + @@ -384791,14 +384862,14 @@ male preputial gland - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -384998,8 +385069,8 @@ - - + + @@ -385028,24 +385099,24 @@ submucous nerve plexus - + - + - + FMA-modified - + FMA-modified @@ -385335,7 +385406,7 @@ - + The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct[GO]. Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts. Drummond, 2000.[TAO] @@ -385348,14 +385419,14 @@ UBERON:0005310 pronephric nephron tubule - + - + GO @@ -385398,8 +385469,8 @@ - - + + The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]. TODO develops_from in mouse, five pairs of symmetrically positioned mammary placodes (three thoracic and two inguinal) form at reproducible locations along the mammary line at E11.5; the individual pairs develop asynchronously and in a distinct order; pair 3 is first, followed by pair 4, then by pairs 1 and 5 (which develop together), and finally by pair 2; the orientation of placodal cells is not uniform, suggesting that placodes are formed by migration of cells from the mammary line; between E11.5 and E12.5, each mammary placode expands and invaginates into the underlying mesenchyme to form an early bulb-shaped mammary bud[MP] @@ -385409,11 +385480,11 @@ UBERON:0005311 mammary placode - + - + @@ -385426,13 +385497,13 @@ - + PMID:20484386 - + Stedmans @@ -385648,7 +385719,7 @@ - + The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder[GO]. AAO:0010390 XAO:0000151 @@ -385656,14 +385727,14 @@ UBERON:0005319 mesonephric collecting duct - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -385746,7 +385817,7 @@ - + A nephron that is part of a mesonephros. The structure that is the basic functional unit of the kidney.[AAO] AAO:0010387 @@ -385758,14 +385829,14 @@ UBERON:0005322 mesonephric nephron - + - + XAO @@ -385839,20 +385910,20 @@ - + The mesonephric macula densa is an area of specialized cells in the distal tubule of the mesonephros that makes contact with the vascular pole of the glomerulus[GO]. uberon UBERON:0005324 mesonephric macula densa - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -385948,20 +386019,20 @@ - + The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]. uberon UBERON:0005326 mesonephric glomerulus vasculature - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -385988,31 +386059,31 @@ - - + + A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros[GO]. uberon UBERON:0005327 mesonephric glomerular epithelium - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -386098,20 +386169,20 @@ - + The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros[GO]. uberon UBERON:0005330 mesonephric nephron epithelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -386138,7 +386209,7 @@ - + @@ -386153,14 +386224,14 @@ UBERON:0005331 mesonephric renal vesicle - + - + ZFA @@ -386299,7 +386370,7 @@ - + The chorioallantoic membrane is a vascular membrane found in eggs of some amniotes, such as birds and reptiles. It is formed by the fusion of the mesodermal layers of two developmental structures: the allantois and the chorion. Three different layers compose the chorioallantoic membrane; these are called the chorionic epithelium, the mesenchyme and the allantoic epithelium. Blood capillaries and sinuses are found between epithelial cells of the chorionic layer, allowing close contact (within 0.2 N<m) with air found in pores of the shell membrane of the egg. As a result, the chorioallantoic membrane allows exchange of gases, such as oxygen, to developing embryos. During embryonic development of birds, the chorioallantoic membrane also plays an essential role in bone formation by transporting calcium into the embryo from the eggshell. Chorioalloantoic membranes from developing chicken eggs are routinely used in biological and biomedical research to investigate development, angiogenesis, tumors, and to propagate and investigate viruses or helminths. respiratory membrane @@ -386314,14 +386385,14 @@ chorioallantoic membrane https://upload.wikimedia.org/wikipedia/commons/f/f8/Smallpox_CAM.png - + - + Hymans @@ -386361,7 +386432,7 @@ - + @@ -386385,14 +386456,14 @@ capillary layer of choroid - + - + overlaps via basement membrane. consider also adjacency Wikipedia:Bruch's_membrane @@ -386656,7 +386727,7 @@ - + The outer neural tube region in which post-mitotic neuroblasts migrate along radial glia to form the adult cortical layers[MP]. A single stem cell in the ventricular layer can give rise to neurons (and glial cells) in any of the cortical layers (Walsh and Cepko 1988)[NCBIBook:NBK10047] in humans develops into cortical layers II-VI @@ -386677,14 +386748,14 @@ cortical plate - + - + NCBIBook:NBK10047 @@ -387555,7 +387626,7 @@ - + @@ -387594,14 +387665,14 @@ paraflocculus - + - + NIFSTD @@ -387889,8 +387960,8 @@ - - + + A pouch of ectoderm that grows out from the upper surface of the embryonic stomodeum and gives rise to the anterior and intermediate lobes of the pituitary gland[MP]. In embryogenesis, Rathke's pouch is a depression in the roof of the developing mouth in front of the buccopharyngeal membrane. It gives rise to the anterior pituitary (adenohypophysis), a part of the endocrine system[WP]. A depression that forms in the roof of the mouth of an embryo, anterior to the buccopharyngeal membrane. The walls of the diverticulum develop into the anterior lobe of the pituitary gland. [TFD][VHOG] @@ -387929,11 +388000,11 @@ Rathke's pouch - + - + @@ -387946,13 +388017,13 @@ - + MP - + NCBIBook:NBK53175 @@ -388623,8 +388694,8 @@ - - + + The large group of sensory neuron cell bodies, anterior to the jugular vein, associated with the vagus nerve (tenth cranial nerve). These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG] inferior vagus X @@ -388656,24 +388727,24 @@ inferior vagus X ganglion - + - + - + EHDAA2 - + EHDAA2 @@ -389268,7 +389339,7 @@ - + @@ -389300,14 +389371,14 @@ spinal cord dorsal column - + - + Wikipedia @@ -389365,7 +389436,7 @@ - + @@ -389393,14 +389464,14 @@ spinal cord lateral column - + - + checkme @@ -389837,7 +389908,7 @@ - + @@ -389879,14 +389950,14 @@ UBERON:0005382 dorsal striatum - + - + NIFSTD @@ -389974,7 +390045,7 @@ - + @@ -390028,14 +390099,14 @@ caudate-putamen - + - + MA @@ -390341,7 +390412,7 @@ - + One of the small globular masses of dense neuropil in the olfactory bulb, containing the first synapse in the olfactory pathway[BTO]. Multi-tissue structure part of the olfactory bulb that is roughly spheroidal and encircled by olfactory sensory neuron axons that formed an anatomically distinct stalk connected to the olfactory nerve[ZFA]. UBERON:0011916 @@ -390356,14 +390427,14 @@ UBERON:0005387 olfactory glomerulus - + - + ZFA @@ -390478,7 +390549,7 @@ - + The most superficial layer of the neocortex characterized by a paucity of cell bodies. ABA:CTX1 BTO:0004906 @@ -390508,14 +390579,14 @@ UBERON:0005390 cortical layer I - + - + NBK10047 @@ -390618,7 +390689,7 @@ - + Layer of neocortex lying just deep to molecular layer characterized by numerous small cell bodies. ABA:CTX2 EMAPA:35256 @@ -390647,14 +390718,14 @@ UBERON:0005391 cortical layer II - + - + BRAINSPAN @@ -390744,7 +390815,7 @@ - + Layer of neocortex lying deep to the external granule cell layer defined cytoarchitecturally by numerous small pyramidal neurons. ABA:CTX3 EMAPA:35257 @@ -390775,14 +390846,14 @@ UBERON:0005392 cortical layer III - + - + BRAINSPAN @@ -390903,7 +390974,7 @@ - + Layer of neocortex lying deep to the external pyramidal cell layer defined cytoarchitecturally by the presence of numerous small cells. ... Relatively undeveloped in some mammals such as the tenrec. @@ -390933,14 +391004,14 @@ UBERON:0005393 cortical layer IV - + - + BRAINSPAN @@ -391060,7 +391131,7 @@ - + Layer of neocortex lying deep to the internal granule cell layer (layer 4) defined cytoarchitecturally by the predominance of large pyramidal cell bodies. ABA:CTX5 EMAPA:35259 @@ -391096,14 +391167,14 @@ UBERON:0005394 cortical layer V - + - + BRAINSPAN @@ -391755,7 +391826,7 @@ - + @@ -391768,7 +391839,7 @@ - + @@ -391796,11 +391867,11 @@ philtrum https://github.com/obophenotype/uberon/pull/2691 - + - + @@ -391813,13 +391884,13 @@ - + EMAPA - + Wikipedia @@ -391861,7 +391932,7 @@ - + @@ -391893,14 +391964,14 @@ ventral striatum - + - + MA @@ -392167,7 +392238,7 @@ - + The small parasympathetic ganglion found anterior to the submandibular gland that provides postsynaptic fibers to the sublingual gland. EHDAA2:0001938 EHDAA:10101 @@ -392178,14 +392249,14 @@ sublingual ganglion - + - + MP @@ -392404,7 +392475,7 @@ - + An otic capsule endochondral element that is composed primarily of cartilage tissue. Bilaterally paired cartilage encasing the semicircular canals of the inner ear.[TAO] relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO] @@ -392425,14 +392496,14 @@ cartilaginous otic capsule - + - + EHDAA2 @@ -392495,7 +392566,7 @@ - + @@ -392513,14 +392584,14 @@ bony otic capsule - + - + EHDAA2 @@ -392543,8 +392614,8 @@ - - + + Groove that is in the developing ventral optic cup and through which blood vessels pass to the enclosed mesenchyme[ZFA]. a ventral fissure in the developing optic cup through which blood vessels pass to the enclosed mesenchyme[Free online medical dictionary]. A break in the continuity of the optic cup where the two sides of the cup meet.[AAO] @@ -392574,11 +392645,11 @@ optic fissure http://upload.wikimedia.org/wikipedia/commons/9/98/Gray865.png - + - + @@ -392591,13 +392662,13 @@ - + EHDAA2 - + cjm @@ -393204,7 +393275,7 @@ - + An apical ectodermal ridge that is part of a pectoral appendage bud. An ectodermal thickening at the end of the forelimb bud in the developing embryo. [TFD][VHOG] Apical ectodermal ridge that is part of the pectoral fin bud.[TAO] @@ -393231,14 +393302,14 @@ pectoral appendage apical ectodermal ridge - + - + EHDAA2 @@ -393348,7 +393419,7 @@ - + An apical ectodermal ridge that is part of a pelvic appendage bud. An ectodermal thickening at the end of the hindlimb bud in the developing embryo. [TFD][VHOG] Apical ectodermal ridge that is part of the pelvic fin bud.[TAO] @@ -393371,14 +393442,14 @@ pelvic appendage apical ectodermal ridge - + - + EHDAA2 @@ -393790,7 +393861,7 @@ - + @@ -393804,7 +393875,7 @@ UBERON:0005427 corneal primordium - + @@ -393823,7 +393894,7 @@ - + ZFA @@ -393914,7 +393985,7 @@ - + A pancreatic duct that develops from the dorsal pancreatic bud. These data show that ducts within the zebrafish pancreas originally arise in situ from isolated progenitor cells rather than arising from reiterative branching of the pancreatic epithelium. This process of pancreatic duct formation in zebrafish may be analogous to the mechanism of duct formation in the mammalian mammary and salivary glands. (...) A related mechanism of duct formation has also been proposed to occur within the mammalian pancreatic epithelium.[uncertain][VHOG] @@ -393943,7 +394014,7 @@ dorsal pancreatic duct http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png - + @@ -393956,7 +394027,7 @@ - + EHDAA2 @@ -394038,7 +394109,7 @@ - + A loop of nerves that are part of the cervical plexus that lies superficial to the internal jugular vein in the carotid sheath. Branches from the ansa cervicalis innervate three of the four infrahyoid muscles, including the sternohyoid muscle, the sternothyroid muscle, and the omohyoid muscle. BAMS:ancer EHDAA2:0000124 @@ -394053,14 +394124,14 @@ ansa cervicalis http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png - + - + EHDAA2 @@ -394102,7 +394173,7 @@ - + @@ -394131,14 +394202,14 @@ anterior spinal artery http://upload.wikimedia.org/wikipedia/commons/7/73/Anterior_spinal_cord_-_very_low_mag.jpg - + - + EHDAA2 @@ -394210,7 +394281,7 @@ - + The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates. the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD][http://medical-dictionary.thefreedictionary.com/aortic+sac]. EHDAA2:0004145 @@ -394225,7 +394296,7 @@ aortic sac - + @@ -394238,7 +394309,7 @@ - + EHDAA2 @@ -394701,7 +394772,7 @@ - + @@ -394726,7 +394797,7 @@ - + A fetal blood vessel connecting the pulmonary artery with the descending aorta[MESH]. In the developing fetus, the ductus arteriosus is a shunt connecting the pulmonary artery to the aortic arch. It allows most of the blood from the right ventricle to bypass the fetus' fluid-filled lungs, protecting the lungs from being overworked and allowing the left ventricle to strengthen. There are two other fetal shunts, the ductus venosus and the foramen ovale[MP]. the fetal vessel that connects the left pulmonary artery with the descending aorta; the ductus arteriosus normally regresses into a fibrous cord, the ligamentum arteriousum after birth[MP]. The temporary channel or blood vessel between the aorta and pulmonary artery in the fetus. [TFD][VHOG] On the other hand, in the sister clade of the actinopterygians, the sarcopterygians, the gill circulation is supplemented with lung ventilation. As a result, the pulmonary artery and vein and a functional ductus arteriosus arose as a major evolutionary innovation from the sixth arch, giving the organism a flexible shunt to balance blood supply to and from gills and lungs according to environmental conditions.[well established][VHOG] @@ -394759,11 +394830,11 @@ ductus arteriosus http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png - + - + @@ -394776,13 +394847,13 @@ - + EHDAA2 - + left branch embryology.ch @@ -394881,8 +394952,8 @@ - - + + An intercostal muscle that aids in quiet and forced inhalation via elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] @@ -394914,11 +394985,11 @@ external intercostal muscle http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + - + @@ -394931,13 +395002,13 @@ - + dbpedia - + EHDAA2 @@ -395052,15 +395123,15 @@ - + - - + + The lateral abdominal wall muscle that is the most superficial, immediately superficial to the internal oblique. Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] @@ -395098,35 +395169,35 @@ abdominal external oblique muscle http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg - + - + - + - + lower 6 intercostal nerve + subcostal nerve dbpedia - + dbpedia - + EHDAA2 @@ -395523,10 +395594,10 @@ - - - - + + + + @@ -395561,44 +395632,44 @@ greater omentum http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1035.png - + - + - + - + - + FMA - + OG - + Wikipedia - + Wikipedia @@ -395754,7 +395825,7 @@ - + The cavity in the abdomen that is inside the peritoneum but outside of the lesser sac. [WP,unvetted]. EHDAA2:0000724 EMAPA:16886 @@ -395768,14 +395839,14 @@ UBERON:0005450 greater sac cavity - + - + EHDAA2 @@ -395899,7 +395970,7 @@ - + A three-dimensional arrangement formed by plates of hepatocytes, usually one cell thick, that radiates from the center of the liver lobule; hepatic laminae are highly branched, irregular structures bordered by endothelial lined vascular spaces called hepatic sinusoids. EMAPA:37880 @@ -395915,14 +395986,14 @@ hepatic cord - + - + FMA @@ -396039,9 +396110,9 @@ - - - + + + The lateral abdominal wall muscle that is deep to the external oblique and superficial to the transversus. Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] EHDAA2:0000879 @@ -396076,36 +396147,36 @@ abdominal internal oblique muscle http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg - + - + - + - + Inguinal ligament Iliac crest and the Lumbodorsal fascia. dbpedia - + Linea alba Xiphoid process and the inferior ribs. dbpedia - + Linea alba Xiphoid process and the inferior ribs. dbpedia @@ -396444,8 +396515,8 @@ - - + + EHDAA2:0000966 EMAPA:16544 FMA:18822 @@ -396455,25 +396526,25 @@ UBERON:0005458 left umbilical artery - + - + - + check this EHDAA2 - + check this EHDAA2 @@ -396573,12 +396644,12 @@ - - - - - - + + + + + + An axial muscle that originates in the cervical vertebraae inserts on the scapula. AAO:0010689 @@ -396600,66 +396671,66 @@ levator scapulae muscle https://upload.wikimedia.org/wikipedia/commons/b/bc/Levator_scapulae.png - + - + - + - + - + - + - + EHDAA2 - + Kardong - + cervical nerve and dorsal scapular nerve dbpedia - + EHDAA2 - + Posterior tubercles of transverse processes of C1 - C4 vertebrae dbpedia - + Superior part of medial border of scapula dbpedia @@ -396713,7 +396784,7 @@ - + Subdivision of abdominal segment of trunk which in humans is demarcated from the front of the abdomen by the posterior surface of the anterior layer of the thoracolumbar fascia and the anterior surface of the lumbar vertebral column; together with the front of the abdomen, it constitutes the abdomen[Modified from FMA]. lumbar lumbar region @@ -396740,14 +396811,14 @@ overlaps with region sometimes called 'loin' lower back - + - + MA @@ -396951,7 +397022,7 @@ - + The median sacral artery (or middle sacral artery) is a small vessel, which arises from the back of the aorta, a little above its bifurcation. It descends in the middle line in front of the fourth and fifth lumbar vertebræ, the sacrum and coccyx, and ends in the glomus coccygeum (coccygeal gland). From it, minute branches are said to pass to the posterior surface of the rectum. On the last lumbar vertebra it anastomoses with the lumbar branch of the iliolumbar artery; in front of the sacrum it anastomoses with the lateral sacral arteries, and sends offsets into the anterior sacral foramina. It is crossed by the left common iliac vein, and is accompanied by a pair of venæ comitantes; these unite to form a single vessel, which opens into the left common iliac vein. EHDAA2:0001087 @@ -396972,14 +397043,14 @@ median sacral artery http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png - + - + Wikipedia @@ -397095,10 +397166,10 @@ - - - - + + + + The platysma is a pharyngeal arch 2 muscle and a superficial facial muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical branch of the facial nerve. It attaches to the mandible and it attaches to the skin of the head, neck, and thoracic region where it is found superficial to the clavicle. Burrows et al. (2011) argue that in hylobatids (and, presumably, other primates) the platysma in the region of the modiolus represents both the cervicale and myoides muscles. The platysma is a pharyngeal arch 2 muscle and a superficial facial muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical branch of the facial nerve, and attaches to the skin.[FEED] @@ -397127,19 +397198,19 @@ https://github.com/obophenotype/uberon/issues/472 http://upload.wikimedia.org/wikipedia/commons/f/fb/Platysma.png - + - + - + - + @@ -397152,27 +397223,27 @@ - + cervical branch of the facial nerve dbpedia - + FEED - + base of mandible; skin of cheek and lower lip; angle of mouth; orbicularis oris dbpedia - + base of mandible; skin of cheek and lower lip; angle of mouth; orbicularis oris dbpedia @@ -397285,8 +397356,8 @@ - - + + EHDAA2:0001760 EMAPA:16545 FMA:18821 @@ -397296,25 +397367,25 @@ UBERON:0005470 right umbilical artery - + - + - + check this EHDAA2 - + check this EHDAA2 @@ -397523,7 +397594,7 @@ - + A portion of the lateral venous sinus, bulging prominently into the mastoid cavity, that serves as a principal conduit by which blood leaves the cranium[EPIC]. The sigmoid is drained by the internal jugular vein. The sigmoid sinuses, within a human head, are 2 areas beneath the brain, which allow blood veins to span the area, from the center of the head downward. They drain from the transverse sinuses (under the back of the brain) to the internal jugular vein. Each sigmoid sinus begins beneath the temporal bone and follows a tortuous course to the jugular foramen, at which point the sinus becomes continuous with the internal jugular vein[Wikipedia:Sigmoid_sinus]. @@ -397542,7 +397613,7 @@ sigmoid sinus https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif - + @@ -397555,7 +397626,7 @@ - + Palaeos @@ -397695,7 +397766,7 @@ - + A longitudinal groove in the neural tube wall that divides the neural tube into dorsal (alar) and ventral (basal) halves (dorsal receives input from sensory neurons, ventral effects motor functions); stretches from the mesencephalon caudad[TMD]. sulcus limitans @@ -397707,14 +397778,14 @@ UBERON:0005478 sulcus limitans of neural tube - + - + EHDAA2 @@ -397958,7 +398029,7 @@ - + Either of the two lateral lobes that constitute the thymus. each lobe of the thymus can be divided into a central medulla and a peripheral cortex which is surrounded by an outer capsule. Each lobe is composed of numerous lobules held together by delicate areolar tissue; the entire organ being enclosed in an investing capsule of a similar but denser structure. The primary lobules vary in size from that of a pin's head to that of a small pea, and are made up of a number of small nodules or follicles.[WP] @@ -397971,14 +398042,14 @@ thymus lobe - + - + FMA-abduced-lr @@ -398188,7 +398259,7 @@ - + @@ -398218,14 +398289,14 @@ venous dural sinus https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif - + - + FMA @@ -398619,7 +398690,7 @@ - + A blood vessel that is associated with the lens. In mammals, this is transient and normally nourishes the retina, immature lens and primary vitreous of the developing eye. we are currently conflating vessel and vasculature - we may wish to split this class - see also vascular plexus term. The ZFA class represents the vasculature EHDAA:4735 @@ -398637,14 +398708,14 @@ hyaloid vessel - + - + ZFA-modified @@ -398693,15 +398764,15 @@ - - + + - + One of a group of muscles used in mastication and swallowing. These muscles are attached to the hyoid bone, which is suspended in the neck and forms the base of the tongue and larynx. The muscles are divided into suprahyoid (superior) or infrahyoid (inferior) groups relative to the bone[WP, generalized]. Although the zebrafish occupies a rather derived phylogenetic position within actinopterygians and even within teleosts, with respect to the mandibular, hyoid and hypobranchial muscles it seems justified to consider it an appropriate representative of these two groups. Among these muscles, the three with clear homologues in tetrapods and the further three identified in sarcopterygian fish are particularly appropriate for comparisons of results between the actinopterygian zebrafish and the sarcopterygians.[well established][VHOG] attachment sites may vary by species; for example, in orangutans, the posterior digastric does not attach to the hyoid, but we may still consider this a (supra)hyoid muscle. @@ -398721,34 +398792,34 @@ hyoid muscle - + - + - + - + ZFA - + EHDAA2 - + EHDAA2 @@ -398912,7 +398983,7 @@ - + todo - epidermis? todo - track down EHDAA2 class in new release In the early gastrula of vertebrates, factors from the organizer (e.g. noggin, chordin, and follistatin in Xenopus) antagonize the epidermalizing factor bone morphogenetic protein 4 (BMP4), thus dividing the epiblast into neuroectoderm. In Drosophila, decapentaplegic, the homologue of BMP4, interacts similarly with the protein short gastrulation, the homologue of chordin. Thus, a comparable molecular mechanism for distinguishing non-neural ectoderm from neural ectoderm was probably present in the common ancestor of all bilaterally symmetrical animals.[well established][VHOG] @@ -398937,7 +399008,7 @@ Gene notes: One of the first genes to be expressed in nonneural ectoderm in amphioxus is BMP2/4 (Panopoulou et al. 1998). BMP2/4 homologues appear to have a very ancient role in distinguishing neural from nonneural ectoderm; in Drosophila as well as in amphioxus and vertebrates, BMP2/4 homologues are expressed in nonneural ectoderm and function in distinguishing neural from nonneural ectoderm (Francois & Bier, 1995 ; Sasai et al. 1995 ; Wilson & Hemmati-Brivanlou, 1995; Panopoulou et al. 1998). A change in level of BMP2/4 from very high in nonneural ectoderm to low in neural ectoderm appears to be a key factor in development of neural crest (Baker & Bronner-Fraser,1997a,1997b;Erickson&Reedy,1998;Marchantet al.1998 ;Selleck et al. 1998). non-neural ectoderm - + @@ -398950,7 +399021,7 @@ - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -399006,7 +399077,7 @@ - + Multi-tissue structure that arises from the heart rudiment and will become the heart tube. EHDAA2:0001512 EHDAA:424 @@ -399024,14 +399095,14 @@ primitive heart tube - + - + ZFA @@ -399059,7 +399130,7 @@ - + Hindbrain segment or neuromere 1. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 1 @@ -399079,14 +399150,14 @@ rhombomere 1 - + - + definitional @@ -399291,7 +399362,7 @@ - + The third transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 3 @@ -399312,14 +399383,14 @@ rhombomere 3 - + - + definitional @@ -399354,7 +399425,7 @@ - + The fourth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 4 @@ -399375,14 +399446,14 @@ rhombomere 4 - + - + definitional @@ -399417,7 +399488,7 @@ - + The fifth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 5 @@ -399438,14 +399509,14 @@ rhombomere 5 - + - + definitional @@ -399480,7 +399551,7 @@ - + The sixth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 6 @@ -399501,14 +399572,14 @@ rhombomere 6 - + - + definitional @@ -399543,7 +399614,7 @@ - + The seventh transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 7 @@ -399563,14 +399634,14 @@ rhombomere 7 - + - + definitional @@ -399605,7 +399676,7 @@ - + The eighth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 8 @@ -399625,14 +399696,14 @@ rhombomere 8 - + - + definitional @@ -399716,10 +399787,10 @@ - - - - + + + + A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production[ZFA]. [PMID]. we follow Kardong table 13.1 in having some developmental contribution of pouch 4 in mammals, but this isn't reflected in EHDAA2. Consider adding distinct term for mesenchyme (see EHDAA2), to indicate NC constribution. A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production. Willett et al, 1999.[TAO] @@ -399738,19 +399809,19 @@ thymus primordium - + - + - + - + @@ -399763,25 +399834,25 @@ - + ZFA - + EHDAA2 - + ZFA - + mesenchymal ZFA https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -399833,7 +399904,7 @@ - + Cranial neural crest which gives rise to the trigeminal ganglion. todo - compare ZFA and EHDAA2 representation We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] @@ -399850,7 +399921,7 @@ trigeminal neural crest - + @@ -399869,7 +399940,7 @@ - + EHDAA2 @@ -399895,7 +399966,7 @@ - + @@ -399924,7 +399995,7 @@ gonad primordium - + @@ -399937,7 +400008,7 @@ - + ZFA @@ -399993,7 +400064,7 @@ - + Cranial neural crest that gives rise to the facio-acoustic ganglion. We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] EHDAA2:0000492 @@ -400008,7 +400079,7 @@ facio-acoustic neural crest - + @@ -400021,7 +400092,7 @@ - + EHDAA2 @@ -400173,7 +400244,7 @@ - + The second transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order. Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] 3 @@ -400194,14 +400265,14 @@ rhombomere 2 - + - + definitional @@ -401249,8 +401320,8 @@ - - + + Somite located in the head region, caudal to the otic vesicle. in humans this includes somites 1-4 They provide the epaxial and hypaxial muscles of the neck, the pharyngeal and laryngeal muscles that develop in the caudal branchial arches and the musculature of the tongue. Despite their localisation in the head, myogenic precursors from occipital somites essentially follow the trunk programmes (E. H. Walters and S. D., unpublished). during evolution, have been secondarily incorporated into the head (Gans and Northcutt, 1983) @@ -401264,24 +401335,24 @@ UBERON:0005594 head somite - + - + - + EHDAA2 - + EHDAA2 @@ -401328,7 +401399,7 @@ - + @@ -401348,7 +401419,7 @@ lung primordium - + @@ -401361,7 +401432,7 @@ - + XAO @@ -401487,8 +401558,8 @@ - - + + The part of the mesocardium dorsal to the embryonic heart; it breaks down to form the transverse sinus of the pericardium. The mesentery of the embryonic heart. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] EHDAA2:0000413 @@ -401504,11 +401575,11 @@ dorsal mesocardium - + - + @@ -401521,13 +401592,13 @@ - + MA - + EHDAA2 @@ -401564,8 +401635,8 @@ - - + + The portion of mesentery attached to the greater curvature of the stomach is named the dorsal mesentery (or dorsal mesogastrium, when referring to the portion at the stomach), and the part which suspends the colon is termed the mesocolon. The dorsal mesogastrium develops into the greater omentum. The dorsal sheet of the primitive mesentery that encloses the stomach. The greater omentum develops from the dorsal mesogastrium. [TFD][VHOG] EHDAA2:0000416 @@ -401581,11 +401652,11 @@ UBERON:0005602 dorsal mesogastrium - + - + @@ -401598,13 +401669,13 @@ - + EHDAA2 - + EHDAA2 @@ -401652,8 +401723,8 @@ - - + + EMAPA:16844 MA:0001636 VHOG:0000215 @@ -401663,24 +401734,24 @@ UBERON:0005604 extrahepatic part of hepatic duct - + - + - + MA - + MA @@ -401702,8 +401773,8 @@ - - + + EMAPA:16845 MA:0001637 VHOG:0000216 @@ -401713,24 +401784,24 @@ UBERON:0005605 intrahepatic part of hepatic duct - + - + - + MA - + MA @@ -401798,7 +401869,7 @@ - + @@ -401817,14 +401888,14 @@ UBERON:0005607 hyaloid vascular plexus - + - + EHDAA2 @@ -401840,7 +401911,7 @@ - + The second arch becomes the hyoid artery, which is prominent in early development and normally persists as the caroticotympanic branch of the ICA[Padget]. EHDAA:3342 @@ -401854,14 +401925,14 @@ hyoid artery - + - + http://www.ajnr.org/cgi/content/full/21/3/572 @@ -402068,7 +402139,7 @@ - + @@ -402088,14 +402159,14 @@ UBERON:0005612 intercostal artery - + - + EHDAA2 @@ -402172,7 +402243,7 @@ - + @@ -402201,14 +402272,14 @@ UBERON:0005614 lens anterior epithelium - + - + FMA-inferred @@ -402280,7 +402351,7 @@ - + Arteries which arise from the abdominal aorta and distribute to most of the intestines. includes posterior and anterior mesenteric arteries, which branch from the dorsal aorta (see Kardong), and superior and inferior mesenteric arteries BTO:0000779 @@ -402299,14 +402370,14 @@ UBERON:0005616 mesenteric artery - + - + Wikipedia @@ -402382,8 +402453,8 @@ - - + + The outgrowths of the embryonic maxillary prominences that come together during prenatal development to form the secondary palate. consider splitting into embryonic/fully formed The outgrowths of the embryonic maxillae that come together during prenatal development to form the secondary palate. [TFD][VHOG] @@ -402403,24 +402474,24 @@ secondary palatal shelf - + - + - + EHDAA2 - + cjm @@ -402471,9 +402542,9 @@ - - - + + + The part of the palate formed from the intermaxillary segment. The shelf separating the oral and nasal cavities that is formed during early embryonic development from protrusions of tissue between the olfactory pits. [TFD][VHOG] Early tetrapod possessed a primary palate that included the vomer, pterygoid, parasphenoid, palatine and ectopterygoid bones. Therapsid evolved a partial secondary palate formed by the medial extension of the premaxilla and maxilla. Mammals have a secondary palate that, in addition to extensions of the premaxilla and maxilla, includes part of the palatine bone[VHOG] @@ -402498,35 +402569,35 @@ primary palate - + - + - + - + consider reversing VHOG - + EHDAA2-abduced - + Wikipedia http://www.indiana.edu/~anat550/hnanim/face/face.html @@ -402602,11 +402673,11 @@ - - - - - + + + + + A rhombus-shaped muscle associated with the scapula and chiefly responsible for its retraction. There are two rhomboid muscles. TODO - add child terms EHDAA2:0001635 @@ -402626,56 +402697,56 @@ rhomboid http://upload.wikimedia.org/wikipedia/commons/a/aa/Rhomboidei.PNG - + - + - + - + - + - + EHDAA2 - + EHDAA2 - + nuchal ligaments spinous processes of the C7 to T5 vertebrae dbpedia - + nuchal ligaments spinous processes of the C7 to T5 vertebrae dbpedia - + dbpedia @@ -402864,8 +402935,8 @@ - - + + The cavity formed by the tubotympanic recess epithelium. EHDAA2:0002095 cavity of tubotympanic recess @@ -402876,24 +402947,24 @@ UBERON:0005625 tubotympanic recess lumen - + - + - + MA - + ISBN:0073040584 @@ -402915,7 +402986,7 @@ - + Portion of ventral mesentery closest to the stomach. The mesentery that originates from the ventral side of the peritoneal cavity.[TAO] The ventral sheet of the primitive mesentery that encloses the stomach. The lesser omentum develops from the ventral mesogastrium. [TFD][VHOG] @@ -402936,14 +403007,14 @@ ventral mesogastrium http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray984.png - + - + EHDAA2 @@ -404125,7 +404196,7 @@ - + An epithelium that is part of a primary palate. EHDAA2:0001500 EMAPA:17643 @@ -404135,14 +404206,14 @@ UBERON:0005659 primary palate epithelium - + - + EHDAA2 @@ -404480,18 +404551,18 @@ - - + + EHDAA2:0000314 uberon UBERON:0005667 connecting stalk mesoderm - + - + @@ -404504,13 +404575,13 @@ - + EHDAA2 - + EHDAA2 @@ -405103,8 +405174,8 @@ - - + + An orbitosphenoid endochondral element that is composed primarily of cartilage tissue. EHDAA2:0001329 EHDAA:9554 @@ -405113,11 +405184,11 @@ UBERON:0005687 orbitosphenoid cartilage element - + - + @@ -405130,13 +405201,13 @@ - + EHDAA2 - + EHDAA2 @@ -405822,7 +405893,7 @@ - + An odontogenic papilla that is part of a upper jaw molar. EHDAA2:0002127 EHDAA:8051 @@ -405833,14 +405904,14 @@ UBERON:0005700 upper jaw molar odontogenic papilla - + - + EHDAA2 @@ -405872,7 +405943,7 @@ - + An odontogenic papilla that is part of a lower jaw molar. EHDAA2:0001027 EHDAA:8015 @@ -405883,14 +405954,14 @@ UBERON:0005701 lower jaw molar odontogenic papilla - + - + EHDAA2 @@ -406003,8 +406074,8 @@ - - + + Mesenchyme that is part of a developing primary palate. EHDAA2:0001501 EHDAA:6968 @@ -406014,24 +406085,24 @@ UBERON:0005705 primary palate mesenchyme - + - + - + EHDAA2 - + EHDAA2 @@ -406071,7 +406142,7 @@ - + An odontogenic papilla that is part of a upper jaw incisor. EHDAA2:0002123 EMAPA:17941 @@ -406081,14 +406152,14 @@ UBERON:0005707 upper jaw incisor odontogenic papilla - + - + EHDAA2 @@ -406120,7 +406191,7 @@ - + An odontogenic papilla that is part of a lower jaw incisor. EHDAA2:0001023 EMAPA:17920 @@ -406130,14 +406201,14 @@ UBERON:0005708 lower jaw incisor odontogenic papilla - + - + EHDAA2 @@ -406365,7 +406436,7 @@ - + An apical ectodermal ridge that is part of a footplate. EHDAA2:0000547 EMAPA:17251 @@ -406373,14 +406444,14 @@ UBERON:0005719 footplate apical ectodermal ridge - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -406445,8 +406516,8 @@ - - + + A mesoderm that has the potential to develop into a pronephros. Portion of tissue that consists of the mesenchymal precursor to the pronephric kidney and that begins to separate from the intermediate mesoderm at NF stage 21 and epithelializes by NF stage 30.[AAO] AAO:0011090 @@ -406465,24 +406536,24 @@ the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney pronephric mesoderm - + - + - + ZFA - + Bgee:AN @@ -406859,7 +406930,7 @@ - + . EHDAA2:0000474 EMAPA:31862 @@ -406872,7 +406943,7 @@ UBERON:0005728 extraembryonic mesoderm - + @@ -406885,7 +406956,7 @@ - + EHDAA2 @@ -407038,7 +407109,7 @@ - + A ring of cells capable of forming a limb or paired fin[Gilbert,modified]. we represent the field as being a part of the LPM (consistent with ZFA, Gilbert). As a consequence, the relationship between limb bud (with is ectoderm+mesenchyme) stands in a weaker has_developmental_contribution_from relation to the field - TODO implement this. limb/fin field of lateral plate mesoderm @@ -407048,14 +407119,14 @@ paired limb/fin field - + - + ISBN:9780878932504 ZFA-inferred @@ -407484,7 +407555,7 @@ - + @@ -407520,14 +407591,14 @@ optic foramen https://upload.wikimedia.org/wikipedia/commons/8/8e/Orbita_mensch.jpg - + - + FMA-abduced-lr @@ -407611,9 +407682,9 @@ - - - + + + Embryonic fibrovascular mesodermal tissue located between the optic cup and lens vesicle that normally regresses during the development of the vitreous body[MP]. Acellular in EHDAA2, MP defs says tissue EHDAA2:0001502 @@ -407626,15 +407697,15 @@ primary vitreous - + - + - + @@ -407648,19 +407719,19 @@ - + cjm - + EHDAA2 - + EHDAA2 @@ -407700,7 +407771,7 @@ - + @@ -407719,14 +407790,14 @@ glomerular tuft - + - + Wikipedia @@ -408100,8 +408171,8 @@ - - + + @@ -408130,24 +408201,24 @@ urorectal septum http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray992.png - + - + - + MA - + EHDAA2 @@ -408362,7 +408433,7 @@ - + @@ -408392,14 +408463,14 @@ glomerular basement membrane http://upload.wikimedia.org/wikipedia/commons/d/de/PhysiologieGlom%C3%A9rulaire.png - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -409047,7 +409118,7 @@ - + Control of blood pressure is crucially dependent on the integrity of a small region of the brainstem called the ventrolateral medulla. Within this part of the brain are the cells that control the heart, blood vessels, swallowing, breathing and many other functions of the body that are not noticed at a conscious level; such unconscious activities are known as 'Autonomic'. One of these regions is the Rostral Ventrolateral Medulla (RVLM) is also known as the pressor area of the medulla (medulla pressor). It receives inhibitory GABAergic input from the caudal ventrolateral medulla (CVLM). The RVLM is the primary regulator of the sympathetic nervous system, sending excitatory fibers (catecholaminergic) to the sympathetic preganglionic neurons in the spinal cord, via reticulospinal tract[WP]. BTO:0002778 Wikipedia:Rostral_ventrolateral_medulla @@ -409057,14 +409128,14 @@ UBERON:0005807 rostral ventrolateral medulla - + - + Wikipedia @@ -409657,7 +409728,7 @@ - + A group of axons that are from neurons involved in proprioception from the lower trunk and lower limb[GO]. The fasciculus gracilis (tract of Goll) is a bundle of axon fibres in the dorsomedial spinal cord that carries information about fine touch, vibrations, and conscious proprioception from the lower part of the body to the brain stem. It is part of the posterior column of the spinal cord, which also contains the fasciculus cuneatus, which carries the same information from the upper part of the body. This tract and its continuation in the brain stem is often referred to as the posterior column-medial lemniscus pathway. The fasciculus gracilis is wedge-shaped on transverse section and lies next the posterior median septum, its base being at the surface of the medulla spinalis, and its apex directed toward the posterior gray commissure. It increases in size from below upward, and consists of long thin fibers that are derived from the posterior nerve roots, and ascend as far as the medulla oblongata, where they end in the nucleus gracilis. The tract of Goll was named after Swiss neuroanatomist Friedrich Goll[WP]. distinction between axon tract and fasicle is unclear UBERON:0004168 @@ -409685,7 +409756,7 @@ gracile fasciculus http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg - + @@ -409698,7 +409769,7 @@ - + GO @@ -409775,7 +409846,7 @@ - + @@ -409793,14 +409864,14 @@ UBERON:0005826 gracile fasciculus of spinal cord - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -410931,7 +411002,7 @@ - + A delimited region of dense mesenchyme within looser mesenchyme. AEO:0000148 EHDAA2_RETIRED:0003148 @@ -410941,7 +411012,7 @@ UBERON:0005856 developing mesenchymal condensation - + @@ -410960,7 +411031,7 @@ - + AEO-modified-relation @@ -410982,7 +411053,7 @@ - + @@ -411003,7 +411074,7 @@ UBERON:0005863 cartilaginous condensation - + @@ -411016,7 +411087,7 @@ - + AEO @@ -411066,7 +411137,7 @@ - + @@ -411082,14 +411153,14 @@ UBERON:0005865 pre-muscle condensation - + - + AEO @@ -411105,7 +411176,7 @@ - + @@ -411125,7 +411196,7 @@ UBERON:0005866 pre-cartilage condensation - + @@ -411138,7 +411209,7 @@ - + AEO @@ -411366,15 +411437,15 @@ - + - - + + An indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]. we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the nasal pits or olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[Wikipedia:Nasal_pit]. @@ -411395,15 +411466,15 @@ olfactory pit - + - + - + @@ -411416,19 +411487,19 @@ - + EMAPA - + EHDAA2 - + XAO:0000275 nasal pit @@ -411918,8 +411989,8 @@ - - + + @@ -411958,24 +412029,24 @@ undifferentiated genital tubercle http://upload.wikimedia.org/wikipedia/commons/d/d6/Gray1119.png - + - + - + EHDAA2 - + https://github.com/obophenotype/uberon/issues/1230 @@ -412051,7 +412122,7 @@ - + @@ -412094,7 +412165,7 @@ pharyngeal cleft http://upload.wikimedia.org/wikipedia/commons/2/20/Kiemenbogen.jpg - + @@ -412107,7 +412178,7 @@ - + EHDAA2-adbuced @@ -412353,8 +412424,8 @@ - - + + A subdivision of skeleton that supports pharyngeal arch 2. it's not clear where AAO:'hyobranchial skeleton' belongs AAO:0000665 @@ -412371,24 +412442,24 @@ UBERON:0005884 hyoid arch skeleton - + - + - + ZFA - + cjm @@ -412442,8 +412513,8 @@ - - + + The part of the pharyngeal arch skeleton that excludes the skeleton of arches 1 and 2. Skeletal and cartilage elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention. Kimmel et al, 1995.[TAO] @@ -412464,24 +412535,24 @@ UBERON:0005886 post-hyoid pharyngeal arch skeleton - + - + - + ZFA - + ZFA-modified @@ -412659,8 +412730,8 @@ - - + + The epithelial lining of the surface of the coelom. EHDAA2:0004049 used to be called 'coelomic epithelium' but is now 'gonadal ridge mesothelium' Wikipedia:Coelomic_epithelium @@ -412671,24 +412742,24 @@ UBERON:0005891 coelomic epithelium - + - + - + XAO - + XAO @@ -413321,9 +413392,9 @@ - - - + + + A serous sac which is the aggregate of the conjunctiva plus the conjunctival space. EMAPA:18233 FMA:20291 @@ -413334,15 +413405,15 @@ UBERON:0005908 conjunctival sac - + - + - + @@ -413355,19 +413426,19 @@ - + FMA - + HPO:pr - + MA @@ -413662,10 +413733,10 @@ - - - - + + + + A turbinal located on the maxilla bone. In many carnivores and ungulates, the maxilloturbinal is the most complex element immediately posterior to the vestibule[PMID:25312359] @@ -413691,19 +413762,19 @@ inferior nasal concha http://upload.wikimedia.org/wikipedia/commons/6/62/Gray192.png - + - + - + - + @@ -413716,25 +413787,25 @@ - + FMA-abduced-lr - + dbpedia - + dbpedia - + ISBN:1588903958 @@ -414407,8 +414478,8 @@ - - + + trabecula trabecular cartilage EFO:0003677 @@ -414420,11 +414491,11 @@ neurocranial trabecula - + - + @@ -414437,13 +414508,13 @@ - + ZFA - + ZFA @@ -414531,7 +414602,7 @@ - + Anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminating in the pulmonary trunk. infundibulum EMAPA:37926 @@ -414554,14 +414625,14 @@ UBERON:0005953 outflow part of right ventricle - + - + PMID:17276708 @@ -415254,7 +415325,7 @@ - + A sheet of somatopleure that grows upward over the embryo and eventually meets in the midline enclosing the embryo, eventually giving rise to the amnion and chorion[Kardong]. EMAPA:16076 amnionic fold @@ -415263,14 +415334,14 @@ amniotic fold - + - + ISBN:0073040584 @@ -415475,7 +415546,7 @@ - + . synonym with hemispheric lobule VIIA based on FMA and NIFSTD BAMS:SSL @@ -415513,14 +415584,14 @@ ansiform lobule crus I - + - + HBA @@ -415697,7 +415768,7 @@ - + . TODO - check BAMS:ISL @@ -415734,14 +415805,14 @@ ansiform lobule crus II - + - + HBA @@ -416344,8 +416415,8 @@ - - + + @@ -416372,24 +416443,24 @@ left bundle branch - + - + - + FMA - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -416469,8 +416540,8 @@ - - + + @@ -416496,24 +416567,24 @@ right bundle branch - + - + - + FMA - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -416592,7 +416663,7 @@ - + @@ -416612,14 +416683,14 @@ atrium myocardial trabecula - + - + ZFA @@ -416669,7 +416740,7 @@ - + The wall of the heart that separates the right atrium and left ventricle; and is located just above the septal cusp of the tricuspid valve. EMAPA:37431 FMA:7136 @@ -416681,14 +416752,14 @@ atrioventricular septum - + - + PMID:15797462 Wikipedia @@ -417001,7 +417072,7 @@ - + @@ -417025,14 +417096,14 @@ chorda tendineae http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png - + - + FMA-abduced @@ -417386,7 +417457,7 @@ - + The paired arteries that carry blood to the yolk sac from the dorsal aorta. EHDAA2:0002208 EMAPA:16207 @@ -417398,14 +417469,14 @@ vitelline artery http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png - + - + ventral branch @@ -417500,8 +417571,8 @@ - - + + @@ -417525,24 +417596,24 @@ hair follicle matrix region - + - + - + FMA - + FMA @@ -417682,7 +417753,7 @@ - + @@ -417704,14 +417775,14 @@ the MP class implies this is part of both the medulla oblongata and the PSNS, which violates the spatial disjointness constraint. We weaken this to continuous_with here. pre-Botzinger complex - + - + Wikipedia @@ -417919,7 +417990,7 @@ - + A small transparent canal running through the vitreous body from the optical nerve disc to the lens. It is formed by an invagination of the hyaloid, a membrane which encloses the vitreous body[WP]. FMA:58837 SCTID:362506002 @@ -417933,14 +418004,14 @@ hyaloid canal http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png - + - + Wikipedia @@ -417984,7 +418055,7 @@ - + Vein internal to the eye. Isogai et al. 2001.[TAO] EHDAA2:0000791 TAO:0005047 @@ -417995,14 +418066,14 @@ UBERON:0006011 hyaloid vein - + - + EHDAA2 @@ -419188,7 +419259,7 @@ - + The falx cerebri, also known as the cerebral falx, so named from its sickle-like form, is a strong, arched fold of dura mater which descends vertically in the longitudinal fissure between the cerebral hemispheres. It is narrow in front, where it is attached to the crista galli of the ethmoid; and broad behind, where it is connected with the upper surface of the tentorium cerebelli. Its upper margin is convex, and attached to the inner surface of the skull in the middle line, as far back as the internal occipital protuberance; it contains the superior sagittal sinus. Its lower margin is free and concave, and contains the inferior sagittal sinus. The falx cerebri is known to calcify with age. EMAPA:18551 FMA:83967 @@ -419204,14 +419275,14 @@ falx cerebri http://upload.wikimedia.org/wikipedia/commons/f/ff/Falxcerebri.jpg - + - + definitional @@ -419763,7 +419834,7 @@ - + That portion of the spine comprising the cervical vertebrae. The neck area of the spine. Anterior region of the vertebral column consisting of one to 19 or 20 vertebrae.[AAO] AAO:0000092 @@ -419788,14 +419859,14 @@ cervical region of vertebral column - + - + FMA @@ -419872,7 +419943,7 @@ - + @@ -419900,14 +419971,14 @@ thoracic region of vertebral column - + - + FMA @@ -420235,7 +420306,7 @@ - + A collection of all skeletal elements in some subdivision of the vertebral column. FMA:16201 subdivision of vertebral skeleton @@ -420249,14 +420320,14 @@ subdivision of vertebral column - + - + FMA @@ -420417,8 +420488,8 @@ - - + + @@ -420451,24 +420522,24 @@ fundus of urinary bladder - + - + - + EHDAA2-modified - + EHDAA2 @@ -420535,7 +420606,7 @@ - + @@ -420569,14 +420640,14 @@ perirhinal cortex - + - + NIFSTD @@ -420629,7 +420700,7 @@ - + @@ -420668,7 +420739,7 @@ UBERON:0006086 stria medullaris - + @@ -420681,7 +420752,7 @@ - + NIFSTD @@ -421465,7 +421536,7 @@ - + @@ -421491,14 +421562,14 @@ UBERON:0006094 superior parietal cortex - + - + NIFSTD @@ -422289,7 +422360,7 @@ - + . B09-24 BAMS:ACA @@ -422316,7 +422387,7 @@ UBERON:0006101 Brodmann (1909) area 24 - + @@ -422329,7 +422400,7 @@ - + https://orcid.org/0000-0003-3308-6245 @@ -422445,7 +422516,7 @@ - + Brodmann area 35, together with Brodmann area 36, is most frequently referred to as perirhinal cortex. Brodmann found a cytoarchitecturally homologous area in the monkey (Cercopithecus), but it was so weakly developed that he omitted it from the cortical map of that species (Brodmann-1909). B09-35 @@ -422469,7 +422540,7 @@ UBERON:0006102 Brodmann (1909) area 35 - + @@ -422482,7 +422553,7 @@ - + WP @@ -422572,7 +422643,7 @@ - + Ectorhinal area 36 is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. With its medial boundary corresponding approximately to the rhinal sulcus it is located primarily in the fusiform gyrus. Cytoarchitecturally it is bounded laterally and caudally by the inferior temporal area 20, medially by the perirhinal area 35 and rostrally by the temporopolar area 38 (H) (Brodmann-1909). Together with Brodmann area 35, it comprises the perirhinal cortex. B09-36 BIRNLEX:1769 @@ -422594,7 +422665,7 @@ UBERON:0006104 Brodmann (1909) area 36 - + @@ -422607,7 +422678,7 @@ - + WP @@ -423142,7 +423213,7 @@ - + Part of fornix adjacent to the fimbria comprising flattened bands of fibers that extend from the fimbria, running underneath the corpus callosum. BAMS:pfx @@ -423165,14 +423236,14 @@ UBERON:0006115 posterior column of fornix - + - + NIFSTD @@ -423995,7 +424066,7 @@ - + FMA:77610 NLXANAT:20090302 diagonal band subdivision @@ -424005,14 +424076,14 @@ subdivision of diagonal band - + - + NIFSTD @@ -424662,7 +424733,7 @@ - + @@ -424680,14 +424751,14 @@ dorsal digital artery of manus - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -425046,20 +425117,20 @@ - + pronephros proximal tubule uberon UBERON:0006173 pronephric proximal tubule - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -425117,19 +425188,19 @@ - + uberon UBERON:0006175 pronephric distal tubule - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -425149,20 +425220,20 @@ - + The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus. uberon UBERON:0006182 mesonephric glomerular mesangium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -425189,31 +425260,31 @@ - - + + . uberon UBERON:0006183 mesonephric glomerular capillary - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -425240,20 +425311,20 @@ - + The mesonephric connecting tubule is a tubular segment of the mesonephric nephron; it connects the distal tubule to the collecting duct in the mesonephros. uberon UBERON:0006189 mesonephric connecting tubule - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -425279,21 +425350,21 @@ - + The mesonephric distal tubule is a mesonephric nephron tubule that begins at the macula densa and extends to the mesonephric connecting tubule. ZFA has terms for developing tubule uberon UBERON:0006190 mesonephric distal tubule - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -425325,21 +425396,21 @@ - + The mesonephric proximal tubule extends from the capsule to the distal tubule. ZFA has terms for developing tubule uberon UBERON:0006192 mesonephric proximal tubule - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -425476,7 +425547,7 @@ - + Any vein serving the ear region. In humans this refers to either the anterior or posterior auricular vein, passing in front of or behind the ear. This class also groups other auricular veins, including the greater, ventral, central auricular nerves. These may exhibit different branching structures. In the pig, the external jugular branches to the maxillary to the caudal auricular to the middle auricular, then onto various unique patterns EMAPA:37136 @@ -425489,14 +425560,14 @@ UBERON:0006197 auricular vein - + - + cjm @@ -425606,7 +425677,7 @@ - + The posterior auricular vein begins upon the side of the head, in a plexus which communicates with the tributaries of the occipital vein and superficial temporal veins. It descends behind the auricula, and joins the posterior division of the posterior facial vein to form the external jugular. It receive the stylomastoid vein, and some tributaries from the cranial surface of the auricula. check placement of MA class @@ -425625,14 +425696,14 @@ posterior auricular vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -425673,8 +425744,8 @@ - - + + EMAPA:37472 FMA:71216 MA:0002091 @@ -425686,24 +425757,24 @@ classes unified on basis of spatial anatomy ontology synonyms caudal humeral circumflex vein - + - + - + FMA/obol - + FMA/obol @@ -425770,7 +425841,7 @@ - + concha FMA:61006 NCIT:C32362 @@ -425783,14 +425854,14 @@ conchal part of pinna - + - + http://php.med.unsw.edu.au @@ -425981,8 +426052,8 @@ - - + + The spiral septum that separates the truncus arteriosus into a ventral pulmonary trunk and the dorsal aorta[MP]. The aorticopulmonary septum is developmentally formed from neural crest, specifically the cardiac neural crest, and actively separates the aorta and pulmonary arteries and fuses with the interventricular septum within the heart during development. The actual mechanism of septation of the outflow tract is poorly understood, but is recognized as a dynamic process with contributions from contractile, hemodynamic, and extracellular matrix interactions. UBERON:0005999 CALOHA:TS-2409 @@ -426003,24 +426074,24 @@ aortico-pulmonary spiral septum http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray470.png - + - + - + EMAPA - + PMID:6844926 Wikipedia @@ -426127,7 +426198,7 @@ - + @@ -426144,14 +426215,14 @@ basioccipital cartilage element - + - + EHDAA2 @@ -426194,7 +426265,7 @@ - + @@ -426238,14 +426309,14 @@ buccopharyngeal membrane http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png - + - + EHDAA2 @@ -426461,8 +426532,8 @@ - - + + The posterior section of the developing metencephalon recognized transiently within the vertebrate embryo; the rhombic lip extends posteriorly from the roof of the fourth ventricle to dorsal neuroepithelial cell and can be divided into eight structural units based on rhombomeres 1-8 (r1-r8), recognized at early stages of hindbrain development; producing granule cells and five brainstem nuclei, the rhombic lip plays an important role in developing a complex cerebellar neural system. The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO] UBERON:0013163 @@ -426486,24 +426557,24 @@ rhombic lip - + - + - + ZFA - + EHDAA2 Wikipedia @@ -426656,7 +426727,7 @@ - + @@ -426697,14 +426768,14 @@ cloacal membrane http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray991.png - + - + Wikipedia @@ -426775,8 +426846,8 @@ - - + + EHDAA2:0000340 EHDAA:6002 EMAPA:17749 @@ -426785,11 +426856,11 @@ deltoid pre-muscle mass - + - + @@ -426802,13 +426873,13 @@ - + EHDAA2 - + EHDAA2 @@ -426874,7 +426945,7 @@ - + The foremost region of the future forebrain that develops into the diencephalon. EFO:0003442 EHDAA2:0000600 @@ -426891,14 +426962,14 @@ future diencephalon - + - + EHDAA2 @@ -427030,9 +427101,9 @@ - - - + + + consider obsoleting, the ethmoid is endochondral? EHDAA2:0000456 EHDAA:8363 @@ -427043,34 +427114,34 @@ ethmoid bone primordium - + - + - + - + FMA - + AAO - + EHDAA2 @@ -427091,7 +427162,7 @@ - + @@ -427108,7 +427179,7 @@ exoccipital pre-cartilage condensation - + @@ -427121,7 +427192,7 @@ - + EHDAA2 @@ -427147,8 +427218,8 @@ - - + + EHDAA2:0000483 EHDAA:2925 EMAPA:17845 @@ -427157,24 +427228,24 @@ extrinsic ocular pre-muscle mass - + - + - + EHDAA2 - + EHDAA2 ISBN:0781772214 @@ -427186,7 +427257,7 @@ - + check this for developmental relationships EHDAA2:0000488 EHDAA:9552 @@ -427199,7 +427270,7 @@ facial bone primordium - + @@ -427212,7 +427283,7 @@ - + EHDAA2 @@ -427228,7 +427299,7 @@ - + @@ -427245,14 +427316,14 @@ facio-acoustic VII-VIII preganglion complex - + - + EHDAA2 @@ -427278,7 +427349,7 @@ - + A differentiated genital tubercle that is part of a female reproductive system. EHDAA:8118 EMAPA:18680 @@ -427290,14 +427361,14 @@ female genital tubercle - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -427553,8 +427624,8 @@ - - + + A tendon that has the potential to develop into a central tendon. The cranial part of the septum transversum gives rise to the central tendon of the diaphragm and is the origin of the myoblasts that invade the pleuroperitoneal folds resulting in the formation of the muscular diaphragm. EHDAA2:0000593 @@ -427567,24 +427638,24 @@ future central tendon - + - + - + EHDAA2 - + mesenchyme cranial part Wikipedia @@ -427694,7 +427765,7 @@ - + @@ -427718,14 +427789,14 @@ future spinal cord - + - + EHDAA2 @@ -427776,8 +427847,8 @@ - - + + A sac-like cavity ventral to the liver, lying in the sub-mesodermal space and closed by a thin sheet of ectodermal cells, from which the future gall bladder develops. EHDAA2:0000700 EHDAA:3047 @@ -427789,24 +427860,24 @@ gallbladder primordium - + - + - + EMAPA - + EHDAA2 @@ -427895,9 +427966,9 @@ - - - + + + @@ -427915,34 +427986,34 @@ humerus cartilage element - + - + - + - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -427975,8 +428046,8 @@ - - + + @@ -427994,24 +428065,24 @@ humerus pre-cartilage condensation - + - + - + EHDAA2 - + EHDAA2 @@ -428044,8 +428115,8 @@ - - + + An iliac endochondral element that is composed primarily of a pre-cartilage condensation. EHDAA2:0000809 EHDAA:9568 @@ -428056,24 +428127,24 @@ iliac pre-cartilage condensation - + - + - + EHDAA2 - + EHDAA2 @@ -428099,7 +428170,7 @@ - + An incus endochondral element that is composed primarily of a pre-cartilage condensation. in EHDAA2 this develops from both mandibular and maxillary mesenchyme. We have still to extend homology relationships from quadrate/incus to their ontogenic precursors ( EHDAA2:0000813 @@ -428111,14 +428182,14 @@ incus pre-cartilage condensation - + - + EHDAA2-generalized @@ -428145,10 +428216,10 @@ - - - - + + + + A funnel-shaped diverticulum that extends downward from the anterior aspect of the floor of the third ventricle into the infundibulum of the hypophysis; the embryonic structure gives rise the neural component of the pituitary (pas nervosa). in FMA this is a cavity, whereas in EHDAA2 it is an epithelial sac BAMS:IRe @@ -428174,19 +428245,19 @@ infundibular recess of 3rd ventricle http://upload.wikimedia.org/wikipedia/commons/7/75/Gray654.png - + - + - + - + @@ -428199,25 +428270,25 @@ - + EMAPA - + EMAPA - + EHDAA2 - + EHDAA2 @@ -428427,8 +428498,8 @@ - - + + An ischial endochondral element that is composed primarily of cartilage tissue. EHDAA2:0000890 EHDAA:9570 @@ -428439,11 +428510,11 @@ ischial cartilage element - + - + @@ -428456,13 +428527,13 @@ - + EHDAA2 - + EHDAA2 @@ -428495,7 +428566,7 @@ - + An ischial endochondral element that is composed primarily of a pre-cartilage condensation. EHDAA2:0000891 EHDAA:7153 @@ -428506,7 +428577,7 @@ ischial pre-cartilage condensation - + @@ -428519,7 +428590,7 @@ - + EHDAA2 @@ -428569,8 +428640,8 @@ - - + + @@ -428603,11 +428674,11 @@ UBERON:0006257 laryngotracheal groove - + - + @@ -428620,13 +428691,13 @@ - + EHDAA2 - + EHDAA2 @@ -428761,7 +428832,7 @@ - + @@ -428780,7 +428851,7 @@ the collection consisting of the two lateral swellings and the medial swelling lingual swellings - + @@ -428793,7 +428864,7 @@ - + EHDAA2 @@ -428839,7 +428910,7 @@ - + A differentiated genital tubercle that is part of a male reproductive system. EHDAA:8138 EMAPA:17969 @@ -428852,14 +428923,14 @@ male genital tubercle - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -428898,7 +428969,7 @@ - + A malleus endochondral element that is composed primarily of a pre-cartilage condensation. EHDAA2:0001055 EHDAA:9026 @@ -428909,14 +428980,14 @@ malleus pre-cartilage condensation - + - + EHDAA2 @@ -428939,8 +429010,8 @@ - - + + @@ -428956,24 +429027,24 @@ Meckel's cartilage pre-cartilage condensation - + - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest - + EHDAA2 @@ -429026,7 +429097,7 @@ - + @@ -429053,7 +429124,7 @@ mural trophectoderm - + @@ -429066,7 +429137,7 @@ - + EMAPA @@ -429107,15 +429178,15 @@ - - + + - + @@ -429146,15 +429217,15 @@ nasolacrimal groove http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray163.png - + - + - + @@ -429167,19 +429238,19 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -429222,7 +429293,7 @@ - + The notochordal plate is the dorsal part of the notochordal process when the ventral portion breaks down. It is continuous laterally with the endoderm that composes the roof of the primitive foregut and is in contact dorsally with the neural tube. The folding off of the notochordal plate gives rise to the notochord. TODO - check ordering; awaiting confirmation from JB The notochordal plate is the dorsal part of the notochordal process when the ventral portion breaks down. It is continuous laterally with the endoderm that composes the roof of the primitive foregut and is in contact dorsally with the neural tube. The folding off of the notochordal plate gives rise to the notochord. [Carson_JL, Dehart_DB, Developmental_Dynamics_(1994)_201:_260-278, Gesteland_K_and_Schoenwolf_GC, Inagaki_T, Morphogenesis_of_the_murine_node_and_notochordal_plate, The_prechordal_plate, Vrablic_T, see_Mueller_F_and_O'Rahilly_R, the_rostral_end_of_the_notochord_and_nearby_median_features_in_staged_human_embryos._Cells_Tissues_Organs_(2003)_173:_1-20_and_Sulik_K][VHOG] @@ -429237,7 +429308,7 @@ notochordal plate - + @@ -429250,7 +429321,7 @@ - + EHDAA2 @@ -429287,7 +429358,7 @@ - + A midline cellular cord formed from the migration of mesenchymal cells from the primitive knot. EHDAA2:0001279 EHDAA:224 @@ -429304,14 +429375,14 @@ The notochordal process grows cranially until it reaches the prechordal plate, the future site of the mouth. In this area the ectoderm is attached directly to the endoderm without intervening mesoderm. This area is known as the oropharyngeal membrane, and it will break down to become the mouth. At the other end of the primitive streak the ectoderm is also fused directly to the endoderm; this is known as the cloacal membrane (proctodeum), or primordial anus. notochordal process - + - + EHDAA2 @@ -429425,7 +429496,7 @@ - + Either of two openings transmitting nerves and blood vessels to or from the orbit. EHDAA2:0001328 EHDAA:10648 @@ -429436,14 +429507,14 @@ orbital fissure - + - + EMAPA @@ -429604,7 +429675,7 @@ - + @@ -429631,14 +429702,14 @@ pericardio-peritoneal canal - + - + EMAPA @@ -429748,14 +429819,14 @@ - + - + Each of the folds that grow out from the lateral part of the body wall. They fuse and meet with the dorsal and ventral mesentery of the foregut, separating the pleural cavities from the pericardial cavity. In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes) Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] As the folds grow towards the midline, carrying the phrenic nerve, the root of the folds migrate ventrally @@ -429772,24 +429843,24 @@ pleuropericardial folds - + - + - + EHDAA2 - + EHDAA2 @@ -429855,7 +429926,7 @@ - + @@ -429876,7 +429947,7 @@ pleuroperitoneal canal - + @@ -429889,7 +429960,7 @@ - + EHDAA2 @@ -429921,14 +429992,14 @@ - + - + @@ -429950,11 +430021,11 @@ polar trophectoderm - + - + @@ -429967,13 +430038,13 @@ - + EMAPA - + EHDAA2 @@ -430042,7 +430113,7 @@ - + EHDAA2:0001498 EHDAA:818 EMAPA:16242 @@ -430052,7 +430123,7 @@ early vein that gives rise to various sinuses primary head vein - + @@ -430065,7 +430136,7 @@ - + EHDAA2 @@ -430081,8 +430152,8 @@ - - + + @@ -430113,24 +430184,24 @@ The embryonic ventricle or primitive ventricle of the developing heart gives rise to the trabeculated parts of the left and right ventricles. In contrast, the smooth parts of the left and right ventricles originate from the embryological bulbus cordis. The primitive ventricle becomes divided by a septum, the septum inferius or ventricular septum, which grows upward from the lower part of the ventricle, its position being indicated on the surface of the heart by a furrow. Its dorsal part increases more rapidly than its ventral portion, and fuses with the dorsal part of the septum intermedium. For a time an interventricular foramen exists above its ventral portion, but this foramen is ultimately closed by the fusion of the aortic septum with the ventricular septum[WP] future cardiac ventricle - + - + - + ZFA - + EMAPA @@ -430176,7 +430247,7 @@ - + Future brain vesicle that gives rise to telencephalic ventricle/lateral ventricles and 3rd ventricle. The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] DHBA:10595 @@ -430196,14 +430267,14 @@ UBERON:0006284 early prosencephalic vesicle - + - + EHDAA2 @@ -430264,7 +430335,7 @@ - + A pubic endochondral element that is composed primarily of a pre-cartilage condensation. EHDAA2:0001574 EHDAA:9572 @@ -430275,7 +430346,7 @@ pubic pre-cartilage condensation - + @@ -430288,7 +430359,7 @@ - + EHDAA2 @@ -430314,7 +430385,7 @@ - + @@ -430336,14 +430407,14 @@ UBERON:0006286 radius cartilage element - + - + EHDAA2 @@ -430416,7 +430487,7 @@ - + @@ -430433,7 +430504,7 @@ rib cartilage element - + @@ -430446,7 +430517,7 @@ - + EHDAA2 @@ -430473,7 +430544,7 @@ - + @@ -430490,7 +430561,7 @@ rib pre-cartilage condensation - + @@ -430503,7 +430574,7 @@ - + EHDAA2-abduced ZFA @@ -430536,8 +430607,8 @@ - - + + @@ -430554,24 +430625,24 @@ scapula cartilage element - + - + - + EHDAA2 - + EHDAA2 @@ -430597,8 +430668,8 @@ - - + + @@ -430616,24 +430687,24 @@ scapula pre-cartilage condensation - + - + - + EHDAA2 - + EHDAA2 @@ -430661,7 +430732,7 @@ - + @@ -430677,7 +430748,7 @@ shoulder joint primordium - + @@ -430690,7 +430761,7 @@ - + EHDAA2 @@ -430707,8 +430778,8 @@ - - + + A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium[ISBN]. the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing spleen[MP]. check difference between splenic and spleen in EMAPA; note that in EHDAA2 the class 'spleen' refers to the mesenchyme UBERON:0009750 @@ -430725,11 +430796,11 @@ spleen primordium - + - + @@ -430742,13 +430813,13 @@ - + EHDAA2-modified - + XAO @@ -430805,8 +430876,8 @@ - - + + A stapes endochondral element that is composed primarily of a pre-cartilage condensation. independent of the mesenchymal condensation that will form the otic capsule EHDAA2:0001910 @@ -430819,24 +430890,24 @@ stapes pre-cartilage condensation - + - + - + EHDAA2 - + cranial end DOI:10.1111/j.1469-7580.2005.00441.x EHDAA2 @@ -430866,7 +430937,7 @@ - + EHDAA2:0001912 EHDAA:9565 EMAPA:18345 @@ -430876,7 +430947,7 @@ sternebral bone pre-cartilage condensation - + @@ -430889,7 +430960,7 @@ - + EHDAA2 @@ -431169,7 +431240,7 @@ - + EHDAA:924 EMAPA:16663 RETIRED_EHDAA2:0002089 @@ -431181,14 +431252,14 @@ See: https://github.com/obophenotype/mouse-anatomy-ontology/issues/13 and https://github.com/obophenotype/uberon/issues/693 -- consider merging into trigeminal ganglion, as this complicates the model future trigeminal ganglion - + - + EHDAA2 @@ -431303,14 +431374,14 @@ - + - + Ventral part of the cloacal membrane separating the gut from the fetus external environment. [TFD][VHOG] EHDAA2:0004025 EHDAA:7011 @@ -431324,24 +431395,24 @@ During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] urogenital membrane - + - + - + EHDAA2 - + EHDAA2 @@ -431574,7 +431645,7 @@ - + @@ -431600,7 +431671,7 @@ UBERON:0006318 orbitalis muscle - + @@ -431613,7 +431684,7 @@ - + FMA @@ -431729,9 +431800,9 @@ - - - + + + Thin, narrow muscle placed near the anterior margin of the floor of the orbit. The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] @@ -431763,15 +431834,15 @@ inferior oblique extraocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + - + - + @@ -431784,20 +431855,20 @@ - + dbpedia - + orbital surface of the maxilla lateral to the lacrimal groove dbpedia - + laterally onto the eyeball deep to the lateral rectus by a short flat tendon dbpedia @@ -431879,14 +431950,14 @@ - + - + The superior oblique muscle, or obliquus oculi superior, is a fusiform muscle in the upper, medial side of the orbit whose primary action is downward, lateral rotation of the eye. One of the extraocular muscles, the superior oblique is the only muscle innervated by the trochlear nerve (the fourth cranial nerve). Cranial nerve IV innervated; dorsal in the obliquus group.[AAO] @@ -431917,11 +431988,11 @@ superior oblique extraocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + - + @@ -431934,13 +432005,13 @@ - + dbpedia - + Outer posterior quadrant of the eyeball dbpedia @@ -432132,7 +432203,7 @@ - + The superior rectus muscle is a muscle in the orbit. It is one of the extraocular muscles. It is innervated by the superior division of the oculomotor nerve (Cranial Nerve III). In the primary position (looking straight ahead), the superior rectus muscle's primary function is elevation, although it also contributes to intorsion and adduction. The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] @@ -432162,7 +432233,7 @@ superior rectus extraocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + @@ -432175,7 +432246,7 @@ - + dbpedia @@ -432392,8 +432463,8 @@ - - + + The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]. The superior constrictor is a muscle that is an integral part of the pharyngeal tube that is attached to the mandible, pterygomandibular raphe, basioccipital bone, pterygoid process and midline raphe and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] EMAPA:18966 @@ -432415,25 +432486,25 @@ superior pharyngeal constrictor http://upload.wikimedia.org/wikipedia/commons/a/ac/Musculusconstrictorpharyngissuperior.png - + - + - + pharyngeal plexus Wikipedia - + dbpedia @@ -432631,7 +432702,7 @@ - + @@ -432662,14 +432733,14 @@ nasal capsule - + - + MA @@ -433096,7 +433167,7 @@ - + EMAPA:18047 FMA:20677 MA:0000444 @@ -433106,7 +433177,7 @@ Compare with lesser sac / omental bursa and its cavities / recesses left subhepatic recess - + @@ -433119,7 +433190,7 @@ - + unverified @@ -433255,14 +433326,14 @@ - + - + A small artery that passes through the ring of the stapes; while the stapedial artery is a temporary artery thought to disappear at late embryonic stage in humans, the mouse stapedial artery is complete by E13 and persists into adulthood[MP]. EHDAA2:0001908 @@ -433281,11 +433352,11 @@ stapedial artery - + - + @@ -433298,13 +433369,13 @@ - + EHDAA2 - + EHDAA2 @@ -433553,7 +433624,7 @@ - + The vasa hyaloidea propria and tunica vasculosa lentis are small branches of the hyaloid artery which fill the primary vitreous. EMAPA:18236 FMA:312395 @@ -433562,14 +433633,14 @@ UBERON:0006358 vasa hyaloidea propria - + - + EMAPA @@ -433697,8 +433768,8 @@ - - + + @@ -433713,24 +433784,24 @@ perihilar interstitium - + - + - + MA - + MA @@ -433786,9 +433857,9 @@ - - - + + + . EMAPA:29671 MA:0002628 @@ -433801,34 +433872,34 @@ UBERON:0006376 premacula segment of distal straight tubule - + - + - + - + MA - + MA - + MA @@ -433917,7 +433988,7 @@ - + @@ -433950,14 +434021,14 @@ UBERON:0006378 strand of vibrissa hair - + - + Wikipedia @@ -434035,7 +434106,7 @@ - + @@ -434059,7 +434130,7 @@ "Endochondral ossification of the ventromedial portion of the braincase." [AAO:0000040] // "An endochondral bone that is located ventral to the pterosphenoid and dorsal to the parasphenoid. Basisphenoid is a median bone that is usually Y-shaped." [TAO:0000169] basisphenoid bone - + @@ -434072,7 +434143,7 @@ - + cjm @@ -434263,7 +434334,7 @@ - + The unique bone located in the glans penis of most mammals except humans; it is used for copulation and varies in size and shape by species. found in most mammals, with the exception of humans @@ -434280,14 +434351,14 @@ os penis - + - + Wikipedia @@ -434397,7 +434468,7 @@ - + @@ -434429,14 +434500,14 @@ os clitoris - + - + Wikipedia @@ -434470,7 +434541,7 @@ - + FMA:20676 SCTID:36051002 hepatic recess @@ -434479,14 +434550,14 @@ UBERON:0006442 subhepatic recess - + - + MA-abduced @@ -436063,7 +436134,7 @@ - + . B09-18 BIRNLEX:1749 @@ -436095,14 +436166,14 @@ UBERON:0006473 Brodmann (1909) area 18 - + - + WP @@ -437079,7 +437150,8 @@ - Brodmann area 44, or BA44, is part of the frontal cortex in the human brain. Situated just anterior to premotor cortex and on the lateral surface, inferior to BA9. This area is also known as pars opercularis (of the inferior frontal gyrus), and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. In the human it corresponds approximately to the opercular part of inferior frontal gyrus (H). Thus, it is bounded caudally by the inferior precentral sulcus (H) and rostrally by the anterior ascending limb of lateral sulcus (H). It surrounds the diagonal sulcus (H). In the depth of the lateral sulcus it borders on the insula. Cytoarchitectonically it is bounded caudally and dorsally by the agranular frontal area 6, dorsally by the granular frontal area 9 and rostrally by the triangular area 45 (Brodmann-1909). + Broca's area is a region of the inferior frontal gyrus (in the dominant cerebral hemisphere, usually on the left side) that is composed of parts of Brodmanns' areas 44 and 45. + https://github.com/obophenotype/uberon/issues/2917 B09-44 BIRNLEX:1776 FMA:68641 @@ -437103,8 +437175,8 @@ - Brodmann area 44, or BA44, is part of the frontal cortex in the human brain. Situated just anterior to premotor cortex and on the lateral surface, inferior to BA9. This area is also known as pars opercularis (of the inferior frontal gyrus), and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. In the human it corresponds approximately to the opercular part of inferior frontal gyrus (H). Thus, it is bounded caudally by the inferior precentral sulcus (H) and rostrally by the anterior ascending limb of lateral sulcus (H). It surrounds the diagonal sulcus (H). In the depth of the lateral sulcus it borders on the insula. Cytoarchitectonically it is bounded caudally and dorsally by the agranular frontal area 6, dorsally by the granular frontal area 9 and rostrally by the triangular area 45 (Brodmann-1909). - Wikipedia:Brodmann_area_44 + Broca's area is a region of the inferior frontal gyrus (in the dominant cerebral hemisphere, usually on the left side) that is composed of parts of Brodmanns' areas 44 and 45. + https://orcid.org/0000-0002-1572-1316 @@ -437187,7 +437259,7 @@ - + Part of the cytoarchitecturally defined frontal region of cerebral cortex. In the human, it occupies the triangular part of the inferior frontal gyrus (human) and, surrounding the anterior horizontal limb of the lateral sulcus (human), a portion of the orbital part of the inferior frontal gyrus (human). Bounded caudally by the anterior ascending limb of the lateral sulcus (human), it borders on the insula in the depth of the lateral sulcus. Cytoarchitectonically it is bounded caudally by the opercular area 44, rostrodorsally by the area 46 of Brodmann (human) and ventrally by the area 47 of Brodmann (human) (Brodmann-1909) (Adapted from Brain Info). Brodmann area 45 (BA45), is part of the frontal cortex in the human brain. Situated on the lateral surface, inferior to BA9 and adjacent to BA46. This area is also known as pars triangular (of the inferior frontal gyrus). In the human, it occupies the triangular part of inferior frontal gyrus (H) and, surrounding the anterior horizontal limb of lateral sulcus (H), a portion of the orbital part of inferior frontal gyrus (H). Bounded caudally by the anterior ascending limb of lateral sulcus (H), it borders on the insula in the depth of the lateral sulcus. In terms of cytoarchitecture, it is bounded caudally by the opercular area 44 (BA44), rostrodorsally by the middle frontal area 46 (BA46), and ventrally by the orbital area 47 (BA47) (Brodmann-1909)[Wikipedia:Brodmann_area_45]. B09-45 @@ -437211,14 +437283,14 @@ UBERON:0006482 Brodmann (1909) area 45 - + - + NIFSTD @@ -438106,7 +438178,7 @@ - + EMAPA:37423 FMA:55348 MA:0001760 @@ -438117,7 +438189,7 @@ UBERON:0006494 apex of arytenoid - + @@ -438130,7 +438202,7 @@ - + MA @@ -438158,7 +438230,7 @@ - + EMAPA:35621 FMA:75666 MA:0001183 @@ -438169,14 +438241,14 @@ Design pattern note: check if conforms to foramen pattern osseus cochlear canal - + - + MA @@ -438341,7 +438413,7 @@ - + The most superior muscles in the sole of the foot that abduct the second to fourth toes. These four muscles also act through the dorsal expansions to resist extension of the metatarsophalangeal joints and flexion of the interphalangeal joints. EMAPA:37517 FMA:37457 @@ -438360,14 +438432,14 @@ dorsal pes interosseous muscle http://upload.wikimedia.org/wikipedia/commons/5/57/Gray446.png - + - + dbpedia @@ -438427,7 +438499,7 @@ - + Any of three muscles with origin from the third, fourth, and fifth metatarsal bones, with insertion to the proximal phalanx of the same toes, with nerve supply from the lateral plantar nerve, and whose action adducts the three lateral toes. EMAPA:37518 FMA:37458 @@ -438445,14 +438517,14 @@ plantar interosseous muscle of pes http://upload.wikimedia.org/wikipedia/commons/2/21/Gray447.png - + - + dbpedia @@ -438592,7 +438664,7 @@ - + Any of the muscles of the autopod region that lie between metacarpal or metatarsal bones. interosseous Wikipedia:Interossei @@ -438603,14 +438675,14 @@ UBERON:0006508 interosseous muscle of autopod - + - + cjm @@ -438633,7 +438705,7 @@ - + Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum. BAMS:PAL @@ -438648,7 +438720,7 @@ UBERON:0006514 pallidum - + @@ -438661,7 +438733,7 @@ - + MA @@ -438695,7 +438767,7 @@ - + The predominant portion of the globus pallidus in the striatopallidal system, which is defined by connectivity and neurochemical staining. The dorsal pallidum is distinguished from the ventral pallidum by a boundary that is partially defined by the anterior commissure. The remainder of the boundary is indistinct in sections stained for Nissl substance ( Heimer-1995 ). BAMS:PALd BTO:0004376 @@ -438709,7 +438781,7 @@ UBERON:0006516 dorsal pallidum - + @@ -438722,7 +438794,7 @@ - + BTO @@ -439558,8 +439630,8 @@ - - + + An organ system subdivision that is a network of vessels capable of removing accumulating protein and fluid from the interstitial space and returning it to the vascular space. In some species, this network is connected to the immune system via lymph nodes and lymphocyte-producing organs, with the whole being the lymphoid system. consider merging with lymph vasculature Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO] @@ -439584,24 +439656,24 @@ lymphatic part of lymphoid system - + - + - + AAO - + FMA MA @@ -440499,7 +440571,7 @@ - + An organ that is part of a vestibular system. BIRNLEX:2519 UMLS:C0682674 @@ -440508,14 +440580,14 @@ UBERON:0006585 vestibular organ - + - + NIFSTD @@ -440543,7 +440615,7 @@ - + @@ -440564,7 +440636,7 @@ UBERON:0006586 otolymph - + @@ -440577,7 +440649,7 @@ - + Wikipedia:Perilymph @@ -440674,7 +440746,7 @@ - + @@ -440697,14 +440769,14 @@ UBERON:0006588 round ligament of liver - + - + Wikipedia @@ -440752,7 +440824,7 @@ - + The round ligament of the uterus originates at the uterine horns, in the parametrium. It leaves the pelvis via the deep inguinal ring, passes through the inguinal canal and continues on to the labia majora where its fibers spread and mix with the tissue of the mons pubis[WP]. A fibromuscular band that attaches to the uterus and then passes along the broad ligament, out through the inguinal ring, and into the labium majus[MESH]. round ligament FMA:20420 @@ -440772,7 +440844,7 @@ round ligament of uterus http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png - + @@ -440785,7 +440857,7 @@ - + lower gubernaculum Wikipedia @@ -441096,7 +441168,7 @@ - + @@ -441109,7 +441181,7 @@ - + Ossified pars articularis of the palatoquadrate cartilage. Endochondral bone that commonly articulates with the ectopterygoid anteriorly, the metapterygoid dorsally, and the symplectic postero-medially. The quadrate is formed from the posterior part of the palatoquadrate cartilage, or pars quadrata. The quadrate is a paired bone.[TAO] @@ -441134,24 +441206,24 @@ quadrate bone - + - + - + AAO - + ZFA @@ -441343,7 +441415,7 @@ - + AAO:0000472 EFO:0003462 TAO:0001334 @@ -441354,14 +441426,14 @@ presumptive enteric nervous system - + - + NCBIBook:NBK10065 @@ -441510,7 +441582,7 @@ - + Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium. Roof between frontoparietal foramen and otic capsules, confluent with taenia tecti marginales.[AAO] relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO] @@ -441524,7 +441596,7 @@ UBERON:0006605 tectum synoticum - + @@ -441537,7 +441609,7 @@ - + ZFA @@ -441608,7 +441680,7 @@ - + A cartilaginous joint that connects left and right mandibles/dentary bones. Mandibular symphysis is unpaired[TAO,modified]. this is placed as part of lower jaw region, as in this ontology the skeleton does not include joints Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired.[TAO] @@ -441632,7 +441704,7 @@ mandibular symphysis http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png - + @@ -441645,7 +441717,7 @@ - + connects adjacent mandibles @@ -442025,9 +442097,9 @@ - - - + + + A sheet of extracellular matrix. Aponeuroses are layers of flat broad tendons. They have a shiny, whitish-silvery color, and are histologically similar to tendons, but are very sparingly supplied with blood vessels and nerves. When dissected, aponeuroses are papery, and peel off by sections. The primary regions with thick aponeurosis is in the ventral abdominal region, the dorsal lumbar region, and in the palmar region. Their primary function is to join muscles and the body parts the muscles act upon[Wikipedia:Aponeurosis]. in ZFA, aponeuroses are subtypes of tendons, but this is inconsistent with tendons being muscle-bone connections @@ -442047,15 +442119,15 @@ aponeurosis http://upload.wikimedia.org/wikipedia/commons/e/e6/Aponeurosis.png - + - + - + @@ -442068,19 +442140,19 @@ - + FMA - + AEO - + AEO @@ -442590,7 +442662,7 @@ - + @@ -442614,7 +442686,7 @@ coracoid process of scapula http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png - + @@ -442627,7 +442699,7 @@ - + EMAPA FMA @@ -442779,7 +442851,7 @@ - + The lumbar arteries are in series with the intercostals. They are usually four in number on either side, and arise from the back of the aorta, opposite the bodies of the upper four lumbar vertebrC&. A fifth pair, small in size, is occasionally present: they arise from the middle sacral artery. They run lateralward and backward on the bodies of the lumbar vertebrC&, behind the sympathetic trunk, to the intervals between the adjacent transverse processes, and are then continued into the abdominal wall. The arteries of the right side pass behind the inferior vena cava, and the upper two on each side run behind the corresponding crus of the diaphragm. The arteries of both sides pass beneath the tendinous arches which give origin to the Psoas major, and are then continued behind this muscle and the lumbar plexus. They now cross the Quadratus lumborum, the upper three arteries running behind, the last usually in front of the muscle. At the lateral border of the Quadratus lumborum they pierce the posterior aponeurosis of the Transversus abdominis and are carried forward between this muscle and the Obliquus internus. They anastomose with the lower intercostal, the subcostal, the iliolumbar, the deep iliac circumflex, and the inferior epigastric arteries. EMAPA:19096 @@ -442798,14 +442870,14 @@ lumbar artery http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png - + - + Wikipedia @@ -443300,7 +443372,7 @@ - + The dense fibrous connective tissue layer that covers the testis. The layer of connective tissue covering the testicles. [Wikipedia_(15/09/09)][VHOG] The tunica albuginea testis is the major component of the capsule of mammalian testes. (...) Our results from studying the mole provide evidence that the spatio-temporal pattern of testis development is not perfectly conserved in mammals, since we found differences with respect to the mouse testis organogenesis. This fact is even more significant when we consider that, apart from the mouse, the mole is probably the one of the best-known mammalian species in terms of the genetic control of testis development, implying that more peculiarities would be found if more species were investigated.[uncertain][VHOG] @@ -443323,14 +443395,14 @@ UBERON:0006643 tunica albuginea of testis - + - + EHDAA2 @@ -443648,9 +443720,9 @@ - - - + + + @@ -443671,15 +443743,15 @@ Some sources consider it a part of the broad ligament of uterus[2] while other sources just consider it a "termination" of the ligament.[3] suspensory ligament of ovary - + - + - + @@ -443692,19 +443764,19 @@ - + FMA-modified - + Wikipedia - + Wikipedia @@ -443732,14 +443804,14 @@ - + - + The outer coelomic epithelial covering of the testis; a sac of serous tissue covering the testis and the epididymis within which the testis can move about; it covers the tunica albuginea. The tunica vaginalis is the serous covering of the testis. It is a pouch of serous membrane, derived from the saccus vaginalis of the peritoneum, which in the fetus preceded the descent of the testis from the abdomen into the scrotum. After its descent, that portion of the pouch which extends from the abdominal inguinal ring to near the upper part of the gland becomes obliterated; the lower portion remains as a shut sac, which invests the surface of the testis, and is reflected on to the internal surface of the scrotum; hence it may be described as consisting of a visceral and a parietal lamina. tunica vaginalis testis has two layers: visceral and parietal; the visceral layer lies on the anterolateral surface of the testis and epididymis; the parietal layer lines the inner surface of the scrotal sac @@ -443764,11 +443836,11 @@ tunica vaginalis testis http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png - + - + @@ -443781,13 +443853,13 @@ - + EMAPA - + Wikipedia @@ -443852,9 +443924,9 @@ - - - + + + The appendix testis is a vestigial remnant of the Mullerian duct, present on the upper pole of the testis and attached to the tunica vaginalis. It is present about 90% of the time. the label hydatid of morgagni is ambiguous w.r.t male vs female. The ncita structure 'hydatic of morgani' is male and thus belongs here. a cystlike remnant of the müllerian duct on the upper end of the testis; corresponding female structure: one of the small pedunculated structures attached to the uterine tubes near their fimbriated end; remnants of the mesonephric ducts[http://medical-dictionary.thefreedictionary.com/]. @@ -443881,34 +443953,34 @@ appendix testis http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png - + - + - + - + EMAPA - + cjm - + Wikipedia @@ -444044,7 +444116,7 @@ - + Erectile tissue at the end of the clitoris, which is continuous with the intermediate part of the vestibulovaginal bulbs[BTO]. The clitoral glans (glans clitoridis) is an external portion of the clitoris[WP]. BTO:0003117 EMAPA:19170 @@ -444063,14 +444135,14 @@ glans clitoris http://upload.wikimedia.org/wikipedia/commons/8/8c/Clitoris_inner_anatomy.gif - + - + cjm @@ -444283,7 +444355,7 @@ - + The deep dorsal vein of the penis lies beneath the deep fascia of the penis; it receives the blood from the glans penis and corpora cavernosa penis and courses backward in the middle line between the dorsal arteries; near the root of the penis it passes between the two parts of the suspensory ligament and then through an aperture between the arcuate pubic ligament and the transverse ligament of the pelvis, and divides into two branches, which enter the pudendal plexus. The deep vein also communicates below the symphysis pubis with the internal pudendal vein. EMAPA:19219 @@ -444295,14 +444367,14 @@ deep dorsal vein of penis - + - + FMA/obol @@ -444324,7 +444396,7 @@ - + Anatomical cavity for the proximal articular surface of the proximal limb or fin element with the scapulocoracoid or equivalent structure. Cavity for the articulation of the forelimb formed by the scapula, coracoid, and clavicle.[AAO] relationship loss: part_of scapular area (AAO:0000935)[AAO] @@ -444350,14 +444422,14 @@ glenoid fossa http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray328.png - + - + to be revised after scapulocoracoid fixes @@ -444459,8 +444531,8 @@ - - + + A joint that connects one phalanx to another along a proximodistal axis. Hinge joints between the phalanges of the hand or foot[ncithesaurus:Interphalangeal_Joint]. EMAPA:37884 @@ -444474,24 +444546,24 @@ interphalangeal joint - + - + - + cjm - + two phalanges in series @@ -444525,7 +444597,7 @@ - + One of a pair of ligaments arranged like a letter X.[1] They occur in several joints of the body, such as the knee. In a fashion similar to the cords in a toy Jacob's ladder, the crossed ligaments stabilize the joint while allowing a very large range of motion[WP]. cruciate ligament @@ -444538,14 +444610,14 @@ UBERON:0006659 cruciate ligament of knee - + - + FMA @@ -444707,7 +444779,7 @@ - + The galea aponeurotica (epicranial aponeurosis, aponeurosis epicranialis) is a tough layer of dense fibrous tissue which covers the upper part of the cranium; behind, it is attached, in the interval between its union with the Occipitales, to the external occipital protuberance and highest nuchal lines of the occipital bone; in front, it forms a short and narrow prolongation between its union with the Frontales. On either side it gives origin to the Auriculares anterior and superior; in this situation it loses its aponeurotic character, and is continued over the temporal fascia to the zygomatic arch as a layer of laminated areolar tissue. It is closely connected to the integument by the firm, dense, fibro-fatty layer which forms the superficial fascia of the scalp: it is attached to the pericranium by loose cellular tissue, which allows the aponeurosis, carrying with it the integument to move through a considerable distance. EMAPA:19210 FMA:46768 @@ -444728,14 +444800,14 @@ epicranial aponeurosis http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png - + - + FMA @@ -444864,8 +444936,8 @@ - - + + The hemiazygos vein (vena azygos minor inferior) is a vein running superiorly in the lower thoracic region, just to the left side of the vertebral column. The major anatomic variation between the pig and other mammalian species is the presence of the large left azygos vein, which enters the coronary sinus (Fig. 1). In other mammals, hemiazygos vein enters the pre- cava. @@ -444887,24 +444959,24 @@ hemiazygos vein http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray480.png - + - + - + ISBN:0443065837 - + FMA/obol @@ -445010,7 +445082,7 @@ - + The accessory hemiazygos vein (vena azygos minor superior) is a vein on the left side of the vertebral column that generally drains the fifth through eighth intercostal spaces on the left side of the body[WP]. TODO - add superclass @@ -445028,14 +445100,14 @@ accessory hemiazygos vein http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray480.png - + - + FMA/obol @@ -445265,7 +445337,7 @@ - + @@ -445289,14 +445361,14 @@ alveolar canal http://upload.wikimedia.org/wikipedia/commons/7/71/Gray157.png - + - + EMAPA @@ -445319,14 +445391,14 @@ - + - + The three-lobed cloverleaf-shaped aponeurosis situated at the center of the diaphragm; the central tendon is fused with the fibrous pericardium that provides attachment for the muscle fibers. In mammals, the diaphragm muscle divides the thoracoabdominal cavity into thorax and abdomen. In most mammals, the diaphragm is a flat sheet with muscle fibers radiating outward from a central tendon, and the diaphragm's apposition to the cranial surface of the liver gives it a dome-shape. Muscle fiber contraction reduces the curvature of the dome, thereby expanding the thoracic cavity and aspirating air into the lungs.[well established][VHOG] EMAPA:17702 @@ -445344,24 +445416,24 @@ central tendon of diaphragm - + - + - + VHOG - + definitional @@ -445424,7 +445496,7 @@ - + A fat pad that is part of a orbital region. EMAPA:19152 FMA:59005 @@ -445437,14 +445509,14 @@ UBERON:0006671 orbital fat pad - + - + inferred @@ -445490,7 +445562,7 @@ - + @@ -445508,14 +445580,14 @@ Design pattern notes: see also incisive duct and foramen incisive canal - + - + EMAPA @@ -445674,7 +445746,7 @@ - + @@ -445705,7 +445777,7 @@ muscularis mucosa http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1058.png - + @@ -445718,7 +445790,7 @@ - + BTO FMA-abduced @@ -446214,7 +446286,7 @@ - + On the lower surface of the basilar part of occipital bone, about 1 cm. in front of the foramen magnum, is the pharyngeal tubercle which gives attachment to the fibrous raphC) of the pharynx, also known as the pharyngeal raphe. This is the point of attachment for the superior pharyngeal constrictor muscle. EMAPA:19250 FMA:75746 @@ -446223,7 +446295,7 @@ UBERON:0006685 pharyngeal tubercle - + @@ -446236,7 +446308,7 @@ - + EMAPA @@ -446307,7 +446379,7 @@ - + The median sacral vein (or middle sacral veins) accompany the corresponding artery along the front of the sacrum, and join to form a single vein, which ends in the left common iliac vein; sometimes in the angle of junction of the two iliac veins. EMAPA:26064 @@ -446318,14 +446390,14 @@ median sacral vein - + - + FMA/obol @@ -446489,7 +446561,7 @@ - + The deep dorsal vein of clitoris is a vein which drains to the vesical plexus. EMAPA:19218 @@ -446501,14 +446573,14 @@ deep dorsal vein of clitoris - + - + FMA/obol @@ -446955,7 +447027,7 @@ - + @@ -447004,14 +447076,14 @@ UBERON:0006698 mammillotegmental axonal tract - + - + FMA @@ -447130,7 +447202,7 @@ - + @@ -447166,14 +447238,14 @@ foramen cecum of tongue https://upload.wikimedia.org/wikipedia/commons/a/a3/Foramen_caecum.png - + - + EHDAA2 @@ -447291,7 +447363,7 @@ - + @@ -447314,14 +447386,14 @@ UBERON:0006714 tibiofibula - + - + AAO @@ -447360,7 +447432,7 @@ - + @@ -447389,14 +447461,14 @@ UBERON:0006715 radio-ulna - + - + VSAO @@ -447438,7 +447510,7 @@ - + @@ -447456,14 +447528,14 @@ UBERON:0006716 mesopodium region - + - + MA:th @@ -447581,9 +447653,9 @@ - - - + + + The medial pterygoid is a pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to the medial pterygoid and attaches to the cranial base and the medial side of the mandibular angle. @@ -447614,35 +447686,35 @@ medial pterygoid muscle http://upload.wikimedia.org/wikipedia/commons/e/ec/Musculuspterygoideusmedialis.png - + - + - + - + mandibular nerve via nerve to medial pterygoid dbpedia - + MFMO - + medial surface in MFMO MFMO @@ -447750,15 +447822,15 @@ - + - - + + Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by the lateral pterygoid nerve branches, and attaches to the condylar process of the mandible and temporomandibular joint (TMJ) capsule, and the cranial base. Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by the lateral pterygoid nerve branches, and attaches to the condylar process of the mandible and TMJ capsule, and the cranial base.[FEED] @@ -447793,22 +447865,22 @@ https://github.com/obophenotype/uberon/issues/539 http://upload.wikimedia.org/wikipedia/commons/b/bb/Musculuspterygoideuslateralis.png - + - + - + - + true lateral pterygoid nerve from the mandibular nerve dbpedia @@ -447816,14 +447888,14 @@ - + Great wing of sphenoid and pterygoid plate dbpedia - + dbpedia @@ -447954,8 +448026,8 @@ - - + + We use this class to group the medial and lateral pterygoids of mammals as well as the pterygoideus of amphibians and reptiles. Note that FEED includes a distinct class for the reptilian pterygoideus. In future, this branch of the ontology may be refined to include a more complete classification of jaw adductors across gnathostomes. See for example DOI:10.1134/S1062359010090050 AAO:0010730 EMAPA:25139 @@ -447970,18 +448042,18 @@ pterygoid muscle - + - + - + generalized from lateral and medial FEED Wikipedia @@ -447989,7 +448061,7 @@ - + generalized dbpedia @@ -448018,10 +448090,10 @@ - - - - + + + + @@ -448056,19 +448128,19 @@ alisphenoid bone http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png - + - + - + - + @@ -448081,25 +448153,25 @@ - + MA - + PMID:11523816 - + FMA-abduced-lr - + ISBN:1588903958 @@ -448181,7 +448253,7 @@ - + @@ -448206,14 +448278,14 @@ manubrium of malleus - + - + cjm @@ -448283,7 +448355,7 @@ - + @@ -448312,14 +448384,14 @@ cochlear modiolus http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png - + - + MA @@ -448375,8 +448447,8 @@ - - + + The osseous spiral lamina is a bony shelf or ledge which projects from the modiolus into the interior of the canal, and, like the canal, takes two-and-three-quarter turns around the modiolus. It reaches about half-way toward the outer wall of the tube, and partially divides its cavity into two passages or scalae, of which the upper is named the scala vestibuli, while the lower is termed the scala tympani. EMAPA:35622 FMA:77710 @@ -448395,24 +448467,24 @@ UBERON:0006724 osseus spiral lamina - + - + - + FMA - + MA @@ -448472,7 +448544,7 @@ - + A spiral thickening of the fibrous lining of the cochlear wall. Spiral ligament secures the membranous cochlear duct to the bony spiral canal of the cochlea. Its spiral ligament fibrocytes function in conjunction with the stria vascularis to mediate cochlear ion homeostasis. this is not classified as a ligament in FMA UBERON:0028186 @@ -448493,14 +448565,14 @@ spiral ligament - + - + MESH-def @@ -449033,7 +449105,7 @@ - + Mammals typically have four parathyroids, while other groups typically have six EHDAA2:0001954 @@ -449050,14 +449122,14 @@ superior parathyroid gland - + - + FMA-abduced-lr @@ -449085,9 +449157,9 @@ - - - + + + Mammals typically have four parathyroids, while other groups typically have six EHDAA2:0000821 EHDAA:3864 @@ -449104,34 +449176,34 @@ inferior parathyroid gland - + - + - + - + FMA-abduced-lr - + http://emedicine.medscape.com/article/845125-overview - + epithelium EHDAA2 @@ -449172,7 +449244,7 @@ - + @@ -449197,14 +449269,14 @@ median lingual swelling http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png - + - + EHDAA2 @@ -449437,7 +449509,7 @@ - + @@ -449450,7 +449522,7 @@ - + The zonule of Zinn (Zinn's membrane, ciliary zonule) is a ring of fibrous strands connecting the ciliary body with the crystalline lens of the eye. The zonule of Zinn is split into two layers: a thin layer, which lines the hyaloid fossa, and a thicker layer, which is a collection of zonular fibers. Together, the fibers are known as the suspensory ligament of the lens[WP]. Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary[ZFA]. FMA:58838 @@ -449475,11 +449547,11 @@ suspensory ligament of lens http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg - + - + @@ -449492,13 +449564,13 @@ - + FMA - + ZFA @@ -449587,7 +449659,7 @@ - + Layer of nonkeratinized squamous epithelium lining the conjunctiva, overlying scleral tissue. BTO:0005131 EFO:0001916 @@ -449602,7 +449674,7 @@ epithelium of conjunctiva - + @@ -449615,7 +449687,7 @@ - + BTO @@ -449663,7 +449735,7 @@ - + A blood vessel of the brain that connects the left and right anterior cerebral arteries. The anterior communicating artery connects the two anterior cerebral arteries across the commencement of the longitudinal fissure. Sometimes this vessel is wanting, the two arteries joining together to form a single trunk, which afterward divides; or it may be wholly, or partially, divided into two. Its length averages about 4 mm, but varies greatly. It gives off some of the anteromedial ganglionic vessels, but these are principally derived from the anterior cerebral artery. It is part of the cerebral arterial circle, also known as the circle of Willis. EHDAA2:0000586 @@ -449680,14 +449752,14 @@ anterior communicating artery http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + FMA @@ -451299,7 +451371,7 @@ - + A nerve that transmits nerve impulses from the central nervous system to effectors such as muscles or glands. AEO:0000202 @@ -451314,14 +451386,14 @@ UBERON:0006798 efferent nerve - + - + AEO @@ -451547,7 +451619,7 @@ - + @@ -451576,14 +451648,14 @@ obturator foramen http://upload.wikimedia.org/wikipedia/commons/f/ff/Skeletpelvis-pubis.jpg - + - + AAO @@ -451798,7 +451870,7 @@ - + A bony projection on the distal epiphysis of the humerus that is the attachment site for the flexor muscles of the manus. This condyle faces posteriorly (for sprawling tetrapods) or medially (for erect tetrapods). Rounded projection at the distal head of the humerus and medial to the humeral head, which serves as a place of attachment for the flexor muscles antogonistic to those that attach to the lateral epicondyle.[AAO] entepicondylar @@ -451821,7 +451893,7 @@ entepicondyle of humerus http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray329-Medial_epicondyle_of_the_humerus.png - + @@ -451834,7 +451906,7 @@ - + FMA @@ -451911,7 +451983,7 @@ - + A bony projection on the distal epiphysis of the humerus that is the attachment site for the extensor muscles of the distal parts of the forelimb. In humans, this is known as the lateral epicondyle, but the position varies across tetrapods. Rounded projection at the distal head of the humerus (larger and more prominent than the lateral epicondyle) and lateral to the humeral head, which serves as a place of attachment for the mm extensor antebrachii et carpi radialis, extensor digitorum communis, and in part to the m extensor antebrachii et carpi ulnaris.[AAO] ectepicondyle @@ -451932,7 +452004,7 @@ ectepicondyle of humerus http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray420.png - + @@ -451945,7 +452017,7 @@ - + FMA @@ -452241,8 +452313,8 @@ - - + + @@ -452259,11 +452331,11 @@ nasal skeleton - + - + @@ -452276,13 +452348,13 @@ - + FMA - + facial series Kardong-abduced @@ -452311,7 +452383,7 @@ - + @@ -452332,7 +452404,7 @@ UBERON:0006815 areolar connective tissue - + @@ -452345,7 +452417,7 @@ - + FMA @@ -453416,7 +453488,7 @@ - + A raised area of the biting surface of a tooth. this class may be obsoleted and split - the TAO class is generic, the mammalian class refers specifically to a molariform tooth Anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth.[TAO] @@ -453435,7 +453507,7 @@ cusp of tooth - + @@ -453448,7 +453520,7 @@ - + FMA @@ -453639,7 +453711,7 @@ - + @@ -453654,14 +453726,14 @@ UBERON:0006848 posterior pretectal nucleus - + - + ISBN:0471888893 @@ -453711,9 +453783,9 @@ - - - + + + @@ -453762,34 +453834,34 @@ scapula https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg - + - + - + - + ZFA-abduced - + ZFA - + definitional @@ -453947,7 +454019,7 @@ - + A region of nephron tubule that is part of a cortex of kidney. EMAPA:18976 MA:0002609 @@ -453957,14 +454029,14 @@ UBERON:0006853 renal cortex tubule - + - + MA @@ -453992,8 +454064,8 @@ - - + + . EMAPA:28402 MA:0002615 @@ -454005,24 +454077,24 @@ UBERON:0006854 distal straight tubule postmacula segment - + - + - + MA - + MA @@ -454072,7 +454144,7 @@ - + A muscular coat that is part of a ureter. EMAPA:28811 FMA:15893 @@ -454088,14 +454160,14 @@ UBERON:0006855 muscular coat of ureter - + - + FMA @@ -454149,10 +454221,10 @@ - - - - + + + + Structures in fishes homologous to the cortical tissue of the mammalian adrenal gland; they are in close proximity to or imbedded in the head kidney. check isa - not a true gland? There are two types of interrenal cells identified (1) The noradrenaline type, which contain heterogeneous vesicles with electron-dense granules located asymmetrically within the vesicular membrane. (2) The adrenaline type, in which the vesicles are smaller and contain homogenous electron-lucent granules that are separated from the vesicular membrane by a visible -- halo http://dev.biologists.org/content/130/10/2107.full An epithelial structure consisting of steroid producing cells interposed with chromaffin cells embedded within the head kidney. The interrenal gland is thought to be the equivalent of the mammalian adrenal cortex in zebrafish. Hsu et al. 2003.[TAO] @@ -454173,44 +454245,44 @@ interrenal gland - + - + - + - + - + ZFA - + ZFA - + DOI:10.1242/dev.00427 - + check body vs gland https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -454428,7 +454500,7 @@ - + @@ -454470,7 +454542,7 @@ swim bladder - + @@ -454483,7 +454555,7 @@ - + Wikipedia @@ -454691,7 +454763,7 @@ - + A proximal metaphysis that is part of a femur. FMA:32878 uberon @@ -454699,14 +454771,14 @@ proximal metaphysis of femur - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -454732,7 +454804,7 @@ - + A distal metaphysis that is part of a femur. FMA:32881 uberon @@ -454740,14 +454812,14 @@ distal metaphysis of femur - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -454773,7 +454845,7 @@ - + A metaphysis that is part of a femur. EMAPA:37540 FMA:32875 @@ -454784,14 +454856,14 @@ metaphysis of femur - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -455003,7 +455075,7 @@ - + @@ -455016,7 +455088,7 @@ - + @@ -455039,24 +455111,24 @@ Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates[WP]. endostyle - + - + - + http://webs.lander.edu/rsfox/invertebrates/ammocoetes.html - + Wikipedia:Endostyle @@ -455404,8 +455476,8 @@ - - + + A head mesenchyme that develops_from a mesoderm. merged in 'head mesoderm' from XAO/AAO and EFO here. Partially implements https://github.com/obophenotype/uberon/wiki/The-neural-crest NC meeting scheme AAO:0011051 @@ -455433,11 +455505,11 @@ head mesenchyme from mesoderm - + - + @@ -455450,13 +455522,13 @@ - + EHDAA2 - + EHDAA2 XAO @@ -455550,7 +455622,7 @@ - + @@ -455573,14 +455645,14 @@ ala of nose http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png - + - + FMA-abduced-lr @@ -455897,7 +455969,7 @@ - + @@ -455916,14 +455988,14 @@ UBERON:0006912 urinary bladder muscularis mucosa - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -456712,8 +456784,8 @@ - - + + @@ -456730,11 +456802,11 @@ crista ampullaris neuroepithelium - + - + @@ -456747,13 +456819,13 @@ - + MA - + FMA @@ -456892,7 +456964,7 @@ - + @@ -456938,14 +457010,14 @@ efferent duct http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg - + - + FMA @@ -457009,7 +457081,7 @@ - + @@ -457036,14 +457108,14 @@ male genital duct - + - + FMA-abduced-lr @@ -457153,7 +457225,7 @@ - + @@ -457178,14 +457250,14 @@ stellate reticulum http://upload.wikimedia.org/wikipedia/commons/e/e3/Cervical-loop.png - + - + BTO Wikipedia @@ -457747,7 +457819,7 @@ - + The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis. CALOHA:TS-1246 @@ -457769,14 +457841,14 @@ ovary stroma - + - + FMA @@ -457835,7 +457907,7 @@ - + The distal part of adenohypophysis: the part that makes up the main body of the gland. Region of the adenohypophysis which produces the follicle-stimulating hormone, luteinizing hormone, prolactin, thyrotropin, and adrenocorticotropin.[AAO] The anterior part of the adenohypophysis. [TFD][VHOG] @@ -457875,7 +457947,7 @@ pars distalis of adenohypophysis - + @@ -457888,7 +457960,7 @@ - + MA @@ -458102,7 +458174,7 @@ - + A capillary that is part of the coronary system. ZFA:0005813 heart capillary @@ -458110,14 +458182,14 @@ UBERON:0006966 coronary capillary - + - + ZFA @@ -458980,7 +459052,7 @@ - + Cranial neural crest that migrates into the mandibular arch. TAO:0007064 XAO:0000024 @@ -458989,7 +459061,7 @@ UBERON:0007098 mandibular neural crest - + @@ -459002,7 +459074,7 @@ - + ZFA @@ -459018,7 +459090,7 @@ - + Cranial neural crest that migrates into the hyoid arch. TAO:0007065 XAO:0000025 @@ -459028,7 +459100,7 @@ UBERON:0007099 hyoid neural crest - + @@ -459041,7 +459113,7 @@ - + ZFA @@ -459079,7 +459151,7 @@ - + A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood or analogs[GO,modified]. note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. 'The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian'. Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis @@ -459095,14 +459167,14 @@ Gene notes: Bmp, Nkx, Gata primary circulatory organ - + - + GO uses blood circulation generically to include the haemolymphatic fluid of arthropods @@ -459203,8 +459275,8 @@ - - + + One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta. The mouse and human placentas have labyrinthine and villous types of interdigitation between maternal and fetal tissues, respectively @@ -459234,24 +459306,24 @@ chorionic villus http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray29.png - + - + - + BTO - + MP-def @@ -459348,7 +459420,7 @@ - + @@ -459367,14 +459439,14 @@ UBERON:0007108 vernix caseosa - + - + MP @@ -459955,7 +460027,7 @@ - + The premolar teeth or bicuspids are transitional teeth located between the canine and molar teeth. In humans, there are two premolars per quadrant, making eight premolars total in the mouth. They have at least two cusps. Premolars can be considered as a 'transitional tooth' during chewing, or mastication. It has properties of both the anterior canines and posterior molars, and so food can be transferred from the canines to the premolars and finally to the molars for grinding, instead of directly from the canines to the molars. The premolars in humans are the maxillary first premolar, maxillary second premolar, mandibular first premolar, and the mandibular second premolar. There is always one large buccal cusp, especially so in the mandibular first premolar. The lower second premolar almost always presents with two lingual cusps. Premolar teeth by definition are permanent teeth distal to the canines preceded by deciduous molars. In primitive mammals there are four premolars per quadrant. The most mesial two have been lost in Catarrhines. Paleontologists refer to human premolars as Pm3 and Pm4 @@ -459990,14 +460062,14 @@ premolar tooth http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1003.png - + - + cardinality not allowed with transitivity in OWL 2 some premolars may have 3 cusps @@ -461069,14 +461141,14 @@ - + - + Teleost head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis[ZFA,modified]. The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. Davidson and Zon 2004.[TAO] @@ -461092,24 +461164,24 @@ head kidney - + - + - + ZFA - + cjm @@ -461565,7 +461637,7 @@ - + A spinal artery that arises from the vertebral artery, adjacent to the medulla oblongata[WP,modified]. EMAPA:18243 @@ -461580,14 +461652,14 @@ posterior spinal artery - + - + EHDAA2 @@ -461742,7 +461814,7 @@ - + The superior thyroid artery arises from the external carotid artery just below the level of the greater cornu of the hyoid bone and ends in the thyroid gland. EMAPA:18624 @@ -461758,14 +461830,14 @@ superior thyroid artery http://upload.wikimedia.org/wikipedia/commons/5/5a/Plate_16_Zuckerkandl.jpg - + - + multiple @@ -461810,7 +461882,7 @@ - + A valve leafleft that is part of a mitral valve. Leaf of cardiac valve which has as its parts the anterior, and posterior leaflets that is attached to the chorda tendinea of left ventricle and to the frbrous ring of mitral valve. The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[uncertain][VHOG] @@ -461827,14 +461899,14 @@ mitral valve leaflet - + - + FMA-abduced @@ -462038,7 +462110,7 @@ - + A vein that drains into the internal thoracic vein, anastomosing with the inferior epigastric vein at the level of the umbilicus and drains the anterior part of the abdominal wall and some of the diaphragm. Along its course, it is accompanied by a similarly named artery, the superior epigastric artery. EMAPA:18761 @@ -462051,14 +462123,14 @@ superior epigastric vein - + - + FMA/obol @@ -462868,7 +462940,7 @@ - + The medial border of the scapula (vertebral border, medial margin) is the longest of the three borders, and extends from the medial to the inferior angle. It is arched, intermediate in thickness between the superior and the axillary borders, and the portion of it above the spine forms an obtuse angle with the part below. This border presents an anterior and a posterior lip, and an intermediate narrow area. The anterior lip affords attachment to the Serratus anterior; the posterior lip, to the Supraspinatus above the spine, the Infraspinatus below; the area between the two lips, to the Levator scapulC& above the triangular surface at the commencement of the spine, to the Rhomboideus minor on the edge of that surface, and to the Rhomboideus major below it; this last is attached by means of a fibrous arch, connected above to the lower part of the triangular surface at the base of the spine, and below to the lower part of the border. consider merging with UBERON:1500000 scapular blade, depending on https://github.com/obophenotype/uberon/issues/339. See also http://www.ncbi.nlm.nih.gov/pubmed/20136669 @@ -462889,7 +462961,7 @@ medial border of scapula - + @@ -462902,7 +462974,7 @@ - + PMID:20136669 @@ -463796,7 +463868,7 @@ - + The structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells. UBERON:0004102 @@ -463813,14 +463885,14 @@ tracheobronchial tree - + - + Wikipedia @@ -464430,14 +464502,14 @@ - + - + One of two subdivisions of the entorhinal cortex, located laterally. LEC BAMS:ENTl @@ -464456,24 +464528,24 @@ Connectivity notes: The lateral entorhinal cortex, for example, is strongly connected to the perirhinal cortex, olfactory and insular cortex and the amygdala.[http://www.scholarpedia.org/article/Entorhinal_cortex] lateral entorhinal cortex - + - + - + MA - + MA @@ -464965,7 +465037,7 @@ - + relationship to Meckel's cartilage to be added Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] EHDAA2:0000031 @@ -464979,14 +465051,14 @@ UBERON:0007237 1st arch mandibular component - + - + EHDAA2 @@ -465030,7 +465102,7 @@ - + relationship to palatoquadrate to be added Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] EHDAA2:0000038 @@ -465041,14 +465113,14 @@ UBERON:0007238 1st arch maxillary component - + - + EHDAA2 @@ -465144,7 +465216,7 @@ - + A tunica adventitia that is part of a artery. EMAPA:36295 EV:0100030 @@ -465156,14 +465228,14 @@ UBERON:0007240 tunica adventitia of artery - + - + FMA @@ -465545,7 +465617,7 @@ - + @@ -465567,14 +465639,14 @@ lingual tonsil https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg - + - + FMA-abduced-lr @@ -466179,7 +466251,7 @@ - + A pre-cartilage condensation that is part of a trachea. EHDAA2:0002070 EHDAA:7082 @@ -466187,14 +466259,14 @@ UBERON:0007267 trachea pre-cartilage rings - + - + EHDAA2 @@ -466216,7 +466288,7 @@ - + The upper esophageal sphincter (UES) (also called the Pharyngoesophageal sphincter) refers to the superior portion of the esophagus. Unlike the lower esophageal sphincter, it consists of striated muscle and is under conscious control. The primary muscle of the UES is the cricopharyngeus portion of the inferior pharyngeal constrictor. During swallowing the upper esophageal sphincter opens so the bolus can pass into the esophagus. A secondary role of the UES is to reduce backflow from the esophagus into the pharynx. FMA:265203 MESH:D049631 @@ -466231,14 +466303,14 @@ upper esophageal sphincter http://upload.wikimedia.org/wikipedia/commons/2/22/Musculusconstrictorpharyngisinferior.png - + - + Wikipedia @@ -466418,7 +466490,7 @@ - + @@ -466433,14 +466505,14 @@ UBERON:0007272 pectoral appendage skeleton - + - + VSAO @@ -466474,7 +466546,7 @@ - + @@ -466486,14 +466558,14 @@ UBERON:0007273 pelvic appendage skeleton - + - + VSAO @@ -466519,7 +466591,7 @@ - + A crista ampullaris neuroepithelium that is part of a anterior semicircular duct. TODO - unvetted @@ -466541,14 +466613,14 @@ crista of ampulla of anterior semicircular duct of membranous laybrinth - + - + Phenoscape @@ -466841,8 +466913,8 @@ - - + + The rhombencephalon (or hindbrain) is a developmental categorization of portions of the central nervous system in vertebrates. The rhombencephalon can be subdivided in a variable number of transversal swellings called rhombomeres. In the human embryo eight rhombomeres can be distinguished, from caudal to rostral: Rh7-Rh1 and the isthmus (the most rostral rhombomere). A rare disease of the rhombencephalon, 'rhombencephalosynapsis' is characterized by a missing vermis resulting in a fused cerebellum. Patients generally present with cerebellar ataxia. The caudal rhombencephalon has been generally considered as the initiation site for neural tube closure. TODO - unify naming conventions The embryonic rhombencephalon can be subdivided in a variable number of transversal swellings called rhombomeres. Rhombomeres Rh7-Rh4 form the myelencephalon that will give the medulla oblongata. Rhombomeres Rh3-Rh1 form the metencephalon that will form the pons and the cerebellum[NPX:PDR]. @@ -466863,24 +466935,24 @@ presumptive hindbrain - + - + - + XAO-abduced - + cjm @@ -466936,7 +467008,7 @@ - + Portion of tissue that is part of the heart tube and will become the sinus venosus. TAO:0002234 ZFA:0001722 @@ -466944,14 +467016,14 @@ UBERON:0007278 presumptive sinus venosus - + - + ZFA @@ -467077,7 +467149,7 @@ - + Embryonic structure that gives rise to the midbrain hindbrain boundary. EFO:0003446 TAO:0001187 @@ -467090,14 +467162,14 @@ presumptive midbrain hindbrain boundary - + - + ZFA @@ -467135,7 +467207,7 @@ - + A presumptive structure that has the potential to develop into a presomitic mesoderm. EFO:0003421 TAO:0000053 @@ -467146,14 +467218,14 @@ presumptive segmental plate - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest EDHAA2 @@ -467285,7 +467357,7 @@ - + The part of the blastula that has the potential to develop into a paraxial mesoderm. EFO:0003443 TAO:0000591 @@ -467298,7 +467370,7 @@ presumptive paraxial mesoderm - + @@ -467314,7 +467386,7 @@ - + https://github.com/obophenotype/uberon/issues/1277 @@ -467748,7 +467820,7 @@ - + A proximal convoluted tubule that is part of a pronephros. TAO:0002238 ZFA:0001620 @@ -467756,14 +467828,14 @@ UBERON:0007298 pronephric proximal convoluted tubule - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -468036,8 +468108,8 @@ - - + + A glomerular capillary that is part of a pronephros. TAO:0005309 ZFA:0005309 @@ -468045,25 +468117,25 @@ UBERON:0007306 pronephric glomerular capillary - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -468089,7 +468161,7 @@ - + A glomerular basement membrane that is part of a pronephros. TAO:0005313 ZFA:0005313 @@ -468098,14 +468170,14 @@ UBERON:0007307 pronephric glomerular basement membrane - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -468138,7 +468210,7 @@ - + A distal early tubule that is part of a pronephros. TAO:0002236 ZFA:0001622 @@ -468147,14 +468219,14 @@ UBERON:0007308 pronephric distal early tubule - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -468292,7 +468364,7 @@ - + @@ -468321,14 +468393,14 @@ internal pudendal artery http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png - + - + FMA-abduced-lr @@ -468387,15 +468459,15 @@ - - + + - + The deep external pudendal artery (deep external pudic artery), more deeply seated than the superficial external pudendal artery, passes medialward across the Pectineus and the Adductor longus muscles; it is covered by the fascia lata, which it pierces at the medial side of the thigh, and is distributed, in the male, to the integument of the scrotum and perineum, in the female to the labium majus; its branches anastomose with the scrotal (or labial) branches of the perineal artery. FMA:20739 @@ -468410,34 +468482,34 @@ deep external pudendal artery http://upload.wikimedia.org/wikipedia/commons/4/43/Gray549.png - + - + - + - + FMA - + FMA - + FMA @@ -468484,14 +468556,14 @@ - + - + An artery that arises from the medial side of the femoral artery, close to the superficial epigastric artery and superficial iliac circumflex artery. FMA:20738 @@ -468508,24 +468580,24 @@ superficial external pudendal artery http://upload.wikimedia.org/wikipedia/commons/4/43/Gray549.png - + - + - + FMA - + FMA @@ -468753,7 +468825,7 @@ - + @@ -468793,7 +468865,7 @@ pancreatic duct http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png - + @@ -468806,7 +468878,7 @@ - + MA @@ -469419,7 +469491,7 @@ - + @@ -469457,7 +469529,7 @@ proventriculus - + @@ -469470,7 +469542,7 @@ - + Wikipedia @@ -470023,7 +470095,7 @@ - + The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. this grouping class exists primarily to align with GO - see GO:0008544. BSA:0000073 @@ -470044,14 +470116,14 @@ outer epithelium - + - + Wikipedia:Epidermis_(zoology) @@ -470652,8 +470724,8 @@ - - + + Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe. TODO - check. note BTO class is placed here as it is placed in hindbrain @@ -470677,24 +470749,24 @@ UBERON:0007412 midbrain raphe nuclei - + - + - + NIFSTD - + Wikipedia @@ -471034,7 +471106,7 @@ - + A neural decussation that is part of a diencephalon. FMA:62446 diencephalon decussation @@ -471042,7 +471114,7 @@ UBERON:0007425 decussation of diencephalon - + @@ -471055,7 +471127,7 @@ - + Obol @@ -471077,7 +471149,7 @@ - + The stratum intermedium in a developing tooth is a layer of two or three cells between the inner enamel epithelium and the newly forming cells of the stellate reticulum. It first appears during the early bell stage of tooth development, at around the 14th week of intrauterine life (in humans). The stratum intermedium has a notably high alkaline phosphatase activity. This layer, along with the inner enamel epithelium, is responsible for the tooth enamel formation. It is a part of the dental (enamel) organ. stratum intermedium BTO:0005009 @@ -471088,14 +471160,14 @@ UBERON:0007440 stratum intermedium of tooth - + - + BTO @@ -471392,7 +471464,7 @@ - + A collection of connected epithelial tubes with a single portal. AEO:0000117 EHDAA2:0003117 @@ -471401,7 +471473,7 @@ UBERON:0007501 arborizing epithelial duct system - + @@ -471414,7 +471486,7 @@ - + AEO @@ -471437,7 +471509,7 @@ - + A complex of interlinking epithelial tubules. AEO:0000118 EHDAA2:0003118 @@ -471445,7 +471517,7 @@ UBERON:0007502 epithelial plexus - + @@ -471458,7 +471530,7 @@ - + AEO @@ -471573,7 +471645,7 @@ - + Mesenchyme with little extracellular matrix. AEO:0000146 EHDAA2:0003146 @@ -471581,7 +471653,7 @@ UBERON:0007524 dense mesenchyme tissue - + @@ -471594,7 +471666,7 @@ - + AEO @@ -471610,8 +471682,8 @@ - - + + Mesenchyme whose cells are embedded in obvious amounts of extracellular matrix. AEO:0000151 EHDAA2:0003151 @@ -471619,11 +471691,11 @@ UBERON:0007529 loose mesenchyme tissue - + - + @@ -471636,13 +471708,13 @@ - + AEO - + AEO @@ -471805,7 +471877,7 @@ - + Part of the regeneration epithelium closest to the fin.[TAO] TAO:0005148 @@ -471816,7 +471888,7 @@ UBERON:0007574 apical epidermal cap - + @@ -471829,7 +471901,7 @@ - + ZFA @@ -472211,9 +472283,9 @@ - - - + + + A muscle on the back of the forearm that extends the fingers and wrist. BTO:0001343 EMAPA:36191 @@ -472231,15 +472303,15 @@ extensor digitorum communis http://upload.wikimedia.org/wikipedia/commons/e/e9/Extensor_digitorum_muscle.png - + - + - + @@ -472252,20 +472324,20 @@ - + extensor expansion of middle and distal phalanges of the 2nd 3rd 4th and 5th fingers dbpedia - + dbpedia - + dbpedia @@ -472301,7 +472373,7 @@ - + EMAPA:36192 MA:0002294 @@ -472313,7 +472385,7 @@ Origin distal to extensor digitorum communis. The part of this muscle that gives a tendon to the 5th digit is comparable to the extensor digiti quinti proprius of the human [ISBN:9780716717553] extensor digitorum lateralis muscle - + @@ -472326,7 +472398,7 @@ - + ISBN:9780716717553 @@ -472354,8 +472426,8 @@ - - + + The extensor minimi digiti (extensor digiti quinti proprius) is a slender muscle of the forearm, placed on the ulnar side of the Extensor digitorum communis, with which it is generally connected. It arises from the common Extensor tendon by a thin tendinous slip, from the intermuscular septa between it and the adjacent muscles. Its tendon runs through a compartment of the dorsal carpal ligament behind the distal radio-ulnar joint, then divides into two as it crosses the manus, and finally joins the expansion of the Extensor digitorum communis tendon on the dorsum of the first phalanx of the little finger[WP]. FMA:38503 @@ -472372,11 +472444,11 @@ extensor digiti minimi muscle http://upload.wikimedia.org/wikipedia/commons/1/15/Gray424.png - + - + @@ -472389,14 +472461,14 @@ - + the anterior portion of the lateral epicondyle of the humerus dbpedia - + at the extensor expansion located at the base of the proximal phalanx of digit V on the dorsal side dbpedia @@ -472492,7 +472564,7 @@ - + A thin, loose vascular connective tissue that makes up the membranes surrounding joints and the sheaths protecting tendons (particularly flexor tendons in the hands and feet) where they pass over bony prominences. Synovial tissue contains synovial cells, which secrete a viscous liquid called synovial fluid; this liquid contains protein and hyaluronic acid and serves as a lubricant and nutrient for the joint cartilage surfaces[BTO]. Synovial tissue can be found in tendons (tissues that connect muscle to bone), bursae (fluid-filled, cushioning sacs found in spaces between tendons, ligaments, and bones), and the cavity (hollow enclosed area) that separates the bones of a freely movable joint, such as the knee or elbow[BTO]. BTO:0001338 CALOHA:TS-0998 @@ -472506,14 +472578,14 @@ UBERON:0007616 layer of synovial tissue - + - + BTO @@ -472636,7 +472708,7 @@ - + A synovial cavity of joint that is part of a hip joint. EMAPA:19021 FMA:9701 @@ -472644,14 +472716,14 @@ UBERON:0007618 synovial cavity of hip joint - + - + FMA @@ -472720,7 +472792,7 @@ - + @@ -472736,14 +472808,14 @@ pecten oculi https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Birdeye.jpg/700px-Birdeye.jpg - + - + cjm @@ -472839,7 +472911,7 @@ - + @@ -472857,14 +472929,14 @@ UBERON:0007626 subparaventricular zone - + - + MA @@ -472910,10 +472982,10 @@ - - - - + + + + . BAMS:MA @@ -472927,44 +472999,44 @@ the magnocellular nucleus projects to virtually all known major parts of the brain network that controls pelvic functions, including micturition, defecation, and penile erection, as well as to brain networks controlling nutrient and body water homeostasis. This and other evidence suggests that the magnocellular nucleus is part of a corticostriatopallidal differentiation modulating and coordinating pelvic functions with the maintenance of nutrient and body water homeostasis[PMID:16304682] magnocellular nucleus of stria terminalis - + - + - + - + - + MA - + PMID:16304682 - + PMID:16304682 - + PMID:16304682 @@ -472998,7 +473070,7 @@ - + The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour. BAMS:LSX @@ -473014,7 +473086,7 @@ UBERON:0007628 lateral septal complex - + @@ -473027,7 +473099,7 @@ - + ABA @@ -473106,7 +473178,7 @@ - + Part of septal nuclear complex. In the human, it refers to the most caudal of scattered clusters of neurons in the septum pellucidum that extend, on the underside of the corpus callosum, from the level of the medial septal nucleus to the CA fields ( Crosby-1962 ). In the rat it is associated with the lateral septal nucleus throughout its rostro-caudal course toward the CA fields ( Swanson-1998. Adapted from Brain Info. @@ -473122,14 +473194,14 @@ UBERON:0007630 septohippocampal nucleus - + - + MA-modified @@ -473157,7 +473229,7 @@ - + BAMS:AOBgl BAMS:GlA BAMS:gl @@ -473173,14 +473245,14 @@ UBERON:0007631 accessory olfactory bulb glomerular layer - + - + ABA @@ -473208,7 +473280,7 @@ - + @@ -473232,7 +473304,7 @@ UBERON:0007632 Barrington's nucleus - + @@ -473245,7 +473317,7 @@ - + MA @@ -473327,8 +473399,8 @@ - - + + @@ -473370,11 +473442,11 @@ UBERON:0007633 nucleus of trapezoid body - + - + @@ -473387,13 +473459,13 @@ - + MA - + NIFSTD @@ -473529,7 +473601,7 @@ - + A nucleus of the parabrachial area, which in the human brain is a horseshoe-shaped strip of gray matter comprising the Kölliker-Fuse nucleus, the lateral parabrachial nucleus and the medial parabrachial nucleus. @@ -473555,7 +473627,7 @@ parabrachial nucleus - + @@ -473568,7 +473640,7 @@ - + MA @@ -473719,7 +473791,7 @@ - + @@ -473750,14 +473822,14 @@ UBERON:0007639 hippocampus alveus - + - + NIFSTD @@ -473912,7 +473984,7 @@ - + @@ -473937,7 +474009,7 @@ trigeminal nuclear complex http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png - + @@ -473950,7 +474022,7 @@ - + FMA @@ -474196,8 +474268,8 @@ - - + + A developing mesenchymal capsule that covers the developing brain and spinal cord and is the precursor of the meningeal cluster. In mammals this gives rise to the arachnoid mater, pia mater and dura mater. In cyclostomes and fishes, the future meninx gives rise to a single meningeal layer, the primitive meninx. decide whether to treat the endo and ecto meninx as subtypes or parts of the future meninx the outermost mesenchymal covering of the developing brain and spinal cord that is composed of tough fibrous connective tissue from which the arachnoid mater, pia mater and dura mater are formed[MP:0009726]d @@ -474212,24 +474284,24 @@ future meninx - + - + - + EHDAA2 - + ISBN:0073040584 @@ -474274,7 +474346,7 @@ - + The innermost layer of the mesenchymal capsule that surrounds the developing brain, primarily of neural crest origin. The endomeninx forms the leptomeninx. future leptomeninges future leptomeninx @@ -474282,14 +474354,14 @@ UBERON:0007646 endomeninx - + - + ISBN:9781607950325 @@ -474315,8 +474387,8 @@ - - + + The outermost layer of the mesenchymal capsule that surrounds the developing brain, of mixed paraxial mesoderm and neural crest origin. The ectomeninx forms the dura mater (both inner layer and outer chondrogenic layer). UBERON:0010115 EHDAA2:0004317 @@ -474325,24 +474397,24 @@ UBERON:0007647 ectomeninx - + - + - + ISBN:9781607950325 - + ISBN:9781607950325 @@ -474364,8 +474436,8 @@ - - + + The junction between the esophagus and the stomach epithelium. compare with gastroesophageal sphincter BTO:0004364 @@ -474385,24 +474457,24 @@ UBERON:0007650 esophagogastric junction - + - + - + MESH - + tFD @@ -474518,7 +474590,7 @@ - + Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft. TODO EMAPA:28506 @@ -474529,7 +474601,7 @@ UBERON:0007653 capillary loop nephron - + @@ -474542,7 +474614,7 @@ - + ZFA @@ -474570,7 +474642,7 @@ - + @@ -474584,7 +474656,7 @@ UBERON:0007654 maturing nephron - + @@ -474597,7 +474669,7 @@ - + EMAPA @@ -474613,7 +474685,7 @@ - + The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space. lateral recess @@ -474635,7 +474707,7 @@ lateral recess of fourth ventricle http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png - + @@ -474648,7 +474720,7 @@ - + EMAPA @@ -474698,8 +474770,8 @@ - - + + The anular ligament (orbicular ligament) is a strong band of fibers, which encircles the head of the radius (bone), and retains it in contact with the radial notch of the ulna. anular ligament EMAPA:19322 @@ -474713,24 +474785,24 @@ UBERON:0007657 anular ligament of radius - + - + - + FMA - + FMA @@ -474827,7 +474899,7 @@ - + Cranial neural crest that is part of the facial region. We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] EMAPA:16311 @@ -474838,7 +474910,7 @@ UBERON:0007681 facial neural crest - + @@ -474851,7 +474923,7 @@ - + EMAPA @@ -474899,7 +474971,7 @@ - + @@ -474918,14 +474990,14 @@ UBERON:0007684 uriniferous tubule - + - + FMA @@ -475083,7 +475155,7 @@ - + @@ -475098,14 +475170,14 @@ UBERON:0007689 thyroid diverticulum - + - + VHOG @@ -475142,8 +475214,8 @@ - - + + . EFO:0003626 EHDAA2:0001457 @@ -475162,11 +475234,11 @@ relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm' early pharyngeal endoderm - + - + @@ -475179,13 +475251,13 @@ - + cjm - + EHDAA2 @@ -475230,7 +475302,7 @@ - + @@ -475249,7 +475321,7 @@ gustatory pore https://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg - + @@ -475262,7 +475334,7 @@ - + FMA @@ -475345,8 +475417,8 @@ - - + + The caroticotympanic branch (tympanic branch) is small; it enters the tympanic cavity through a minute foramen in the carotid canal, and anastomoses with the anterior tympanic branch of the internal maxillary, and with the stylomastoid artery. FMA:49828 @@ -475360,24 +475432,24 @@ caroticotympanic artery - + - + - + http://www.ajnr.org/cgi/content/full/21/3/572 - + FMA @@ -475423,7 +475495,7 @@ - + An axon tract that is part of a spinal cord. FMA:75683 NCIT:C12995 @@ -475433,14 +475505,14 @@ UBERON:0007699 tract of spinal cord - + - + cjm @@ -475478,7 +475550,7 @@ - + An axon tract that is part of a brain. the NIFSTD class 'nerve tract' is classified under 'regional part of brain', so it may seem like it belongs here, but actually includes spinal cord tracts FMA:83848 @@ -475488,14 +475560,14 @@ UBERON:0007702 tract of brain - + - + cjm @@ -475564,7 +475636,7 @@ - + @@ -475584,14 +475656,14 @@ UBERON:0007707 superior cerebellar peduncle of midbrain - + - + NIF @@ -475652,7 +475724,7 @@ - + FMA:72495 most likely denotes this class rather than the more generic parent, due to the part of relationship to pontine tegmentum. SCPP BAMS:scpp @@ -475669,14 +475741,14 @@ superior cerebellar peduncle of pons - + - + FMA @@ -476129,7 +476201,7 @@ - + @@ -476156,14 +476228,14 @@ interphalangeal joint of pes - + - + two in series @@ -476227,7 +476299,7 @@ - + @@ -476256,14 +476328,14 @@ interphalangeal joint of manus - + - + two in series @@ -476750,7 +476822,7 @@ - + @@ -476769,14 +476841,14 @@ UBERON:0007729 interphalangeal joint of manual digit 2 - + - + EMAPA @@ -477037,7 +477109,7 @@ - + A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 1. EMAPA:25057 FMA:35249 @@ -477052,14 +477124,14 @@ metacarpophalangeal joint of manual digit 1 - + - + FMA @@ -477116,7 +477188,7 @@ - + A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 2. EMAPA:25060 FMA:35252 @@ -477131,14 +477203,14 @@ UBERON:0007738 metacarpophalangeal joint of manual digit 2 - + - + FMA @@ -477201,7 +477273,7 @@ - + A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 3. EMAPA:25063 FMA:35255 @@ -477218,14 +477290,14 @@ metacarpophalangeal joint of manual digit 3 - + - + FMA @@ -477295,7 +477367,7 @@ - + A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 4. EMAPA:25066 FMA:35258 @@ -477312,14 +477384,14 @@ metacarpophalangeal joint of manual digit 4 - + - + FMA @@ -477389,7 +477461,7 @@ - + A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 5. EMAPA:25069 FMA:35261 @@ -477405,14 +477477,14 @@ metacarpophalangeal joint of manual digit 5 - + - + FMA @@ -477475,7 +477547,7 @@ - + A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 1. the name of the structure in EMAPA is incorrect EMAPA:26436 @@ -477493,14 +477565,14 @@ metatarsophalangeal joint of pedal digit 1 - + - + FMA @@ -477569,7 +477641,7 @@ - + A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 2. the name of the structure in EMAPA is incorrect EMAPA:26442 @@ -477583,14 +477655,14 @@ metatarsophalangeal joint of pedal digit 2 - + - + FMA @@ -477647,7 +477719,7 @@ - + A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 3. the name of the structure in EMAPA is incorrect EMAPA:26460 @@ -477661,14 +477733,14 @@ metatarsophalangeal joint of pedal digit 3 - + - + FMA @@ -477725,7 +477797,7 @@ - + A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 4. the name of the structure in EMAPA is incorrect EMAPA:26472 @@ -477739,14 +477811,14 @@ metatarsophalangeal joint of pedal digit 4 - + - + FMA @@ -477803,7 +477875,7 @@ - + A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 5. the name of the structure in EMAPA is incorrect EMAPA:26484 @@ -477818,14 +477890,14 @@ metatarsophalangeal joint of pedal digit 5 - + - + FMA @@ -477874,7 +477946,7 @@ - + The culmen is the portion of the anterior vermis adjacent to the primary fissure of cerebellum. The culmen and the anterior parts of the quadrangular lobules form the lobus culminis[WP]. The culmen lobule (lobules IV/V) is a single structure in humans, but it is divided by the intraculminate fissure in many rodents. In some mouse strains such as SLJ/J, the intraculminate fissure is absent, in some strains such as DBA/2J it is present, and other strains (C57BL/10J and BALB/cJ) exhibit considerable variablility (PMID: 1953602).[MP] ABA splits culmen into IV and V and IV-V @@ -477896,7 +477968,7 @@ UBERON:0007763 cerebellum vermis culmen - + @@ -477909,7 +477981,7 @@ - + FMA @@ -478148,7 +478220,7 @@ - + BAMS:MPA BAMS:MPO @@ -478164,14 +478236,14 @@ medial preoptic region - + - + MA @@ -478529,7 +478601,7 @@ - + An endothelium that is part of a umbilical vein. BTO:0001416 CALOHA:TS-1081 @@ -478537,14 +478609,14 @@ UBERON:0007777 umbilical vein endothelium - + - + BTO @@ -478571,14 +478643,14 @@ - + An endothelium that is part of a umbilical artery. BTO:0000857 uberon UBERON:0007778 umbilical artery endothelium - + @@ -478591,7 +478663,7 @@ - + BTO @@ -478744,7 +478816,7 @@ - + The serous fluid which accumulates in the peritoneal cavity in ascites. TODO - move to pathological anatomical entity ontology BTO:0000091 @@ -478756,14 +478828,14 @@ UBERON:0007795 ascitic fluid - + - + BTO @@ -478791,7 +478863,7 @@ - + Anatomical system that consists of all blood and lymph vessels. consider merging with vasculature The cardiovascular and lymphatic systems, collectively[ncithesaurus:Vascular_System]. @@ -478808,14 +478880,14 @@ vascular system - + - + MA @@ -478914,7 +478986,7 @@ - + Pygostyle refers to a number of the final few caudal vertebrae fused into a single ossification, supporting the tail feathers and musculature. In modern birds, the rectrices attach to these[WP]. SCTID:416894001 Wikipedia:Pygostyle @@ -478924,14 +478996,14 @@ pygostyle - + - + Wikipedia @@ -478958,8 +479030,8 @@ - - + + @@ -478985,11 +479057,11 @@ The gland is found near the base of the tail and is shaped into two symmetric parts. The oil of each part of the gland is secreted through the surface of the skin through a grease nipple-like nub. A bird will typically transfer this oil to its feathers by rubbing its head against the oil and then around the rest of the body. Tailward areas are usually preened utilizing the beak. Not all birds have a uropygial gland. Exceptions include the emu, ostrich, and bustards. These typically find other means to stay clean and dry, such as taking a dust bath uropygial gland - + - + @@ -479002,13 +479074,13 @@ - + BTO - + Wikipedia @@ -479165,7 +479237,7 @@ - + A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord. TODO - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels BTO:0004705 @@ -479175,7 +479247,7 @@ UBERON:0007806 connecting stalk - + @@ -479188,7 +479260,7 @@ - + EHDAA2 @@ -479220,7 +479292,7 @@ - + A vasculature that is part of a connecting stalk. EHDAA2:0000313 connecting stalk blood vessels @@ -479230,14 +479302,14 @@ UBERON:0007807 connecting stalk vasculature - + - + EHDAA2 @@ -479314,9 +479386,9 @@ - - - + + + The superficial layer (fascia of Camper) is a thick superficial layer of the anterior abdominal wall. It is areolar in texture, and contains in its meshes a varying quantity of adipose tissue. It is found superficial to Scarpa's fascia. FMA:19922 Wikipedia:Fascia_of_Camper @@ -479335,34 +479407,34 @@ fascia of Camper http://upload.wikimedia.org/wikipedia/commons/2/28/Gray393.png - + - + - + - + FMA - + Wikipedia - + Wikipedia @@ -479546,7 +479618,7 @@ - + @@ -479582,14 +479654,14 @@ post-anal tail - + - + possible exception in hemichordates cjm @@ -480037,8 +480109,8 @@ - - + + Mesentery that is located in the peritoneum. FMA:20570 TAO:0005129 @@ -480048,24 +480120,24 @@ UBERON:0007826 peritoneal mesentery - + - + - + FMA - + ZFA @@ -480316,7 +480388,7 @@ - + @@ -480356,14 +480428,14 @@ pectoral girdle skeleton http://upload.wikimedia.org/wikipedia/commons/2/22/Pectoral_girdle_front_diagram.svg - + - + XAO @@ -480480,7 +480552,7 @@ - + Skeletal subdivision consisting of a set of bones linking the axial series to the hindlimb zeugopodium and offering anchoring areas for hindlimb and caudal musculature. need to resolve whether this is a paired structure or a single belt (Paired in FMA - implicitly paired in VSAO) Anatomical cluster by which the hind limbs are supported and attached to the vertebral column.[AAO] @@ -480517,14 +480589,14 @@ pelvic girdle skeleton http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray242.png - + - + PMID:21455939 @@ -480609,8 +480681,8 @@ - - + + The organ of balance composed of three long bony tubes of the labyrinth. consider adding FMA:60186 ! Semicircular canal here, as it is part of the bony labyrinth MA:0000250 @@ -480620,11 +480692,11 @@ osseus semicircular canal - + - + @@ -480637,13 +480709,13 @@ - + MA - + MA @@ -480899,7 +480971,7 @@ - + @@ -480931,14 +481003,14 @@ UBERON:0007841 furcula - + - + http://people.eku.edu/ritchisong/342notes5.htm @@ -481028,7 +481100,7 @@ - + A posterior projection from proximal rib segments. Offers attachment sites for respiratory and shoulder muscles as well as adding structural support to the trunk skeleton[Kardong 2012]. @@ -481042,14 +481114,14 @@ WP: Although bony uncinate processes are unique to birds, cartilaginous uncinate processes are present in crocodiles. The uncinate process has also been reported in Sphenodon, Caudipteryx, oviraptorids, Confuciusornis and Chaoyangia however it does not occur in Archaeopteryx uncinate process of ribs - + - + ISBN:0073040584 @@ -481100,8 +481172,8 @@ - - + + Skeletal element that is composed of cartilage tissue and may be permanent or transient. TAO still mixes tissue and element AAO:0011130 @@ -481121,11 +481193,11 @@ cartilage element - + - + @@ -481138,13 +481210,13 @@ - + VSAO - + VSAO @@ -481349,8 +481421,8 @@ - - + + Fibrous connective tissue that surrounds the notochord; includes a layer of elastin. Portion of connective tissue which surrounds the notochord.[TAO] relationship type change: part_of notochord (VSAO:0000032) CHANGED TO: surrounds notochord (UBERON:0002328)[VSAO] @@ -481370,11 +481442,11 @@ Derived from cells surrounding the notochord (possibly the slerotome). Disparate from (not derived from) notochord. perichordal tissue - + - + @@ -481387,13 +481459,13 @@ - + VSAO-modified - + ISBN:0073040584 @@ -481470,7 +481542,7 @@ - + A bone that is part of a craniocervical region. EMAPA:37245 MA:0000569 @@ -481480,7 +481552,7 @@ UBERON:0007914 bone of craniocervical region - + @@ -481493,7 +481565,7 @@ - + MA @@ -481749,7 +481821,7 @@ - + compare with pisiform EMAPA:36621 MA:0001379 @@ -481758,7 +481830,7 @@ UBERON:0007993 ulnar sesamoid bone - + @@ -481771,7 +481843,7 @@ - + MA-inferred @@ -481842,7 +481914,7 @@ - + A sesamoid bone that is part of a pes. FMA:45096 SCTID:244675002 @@ -481851,7 +481923,7 @@ UBERON:0008000 sesamoid bone of pes - + @@ -481864,7 +481936,7 @@ - + FMA @@ -482022,7 +482094,7 @@ - + FMA has multiple 'Articular surface of X' classes, with no way to group them EMAPA:37620 MA:0001518 @@ -482030,14 +482102,14 @@ UBERON:0008124 joint articular surface - + - + MA @@ -482059,7 +482131,7 @@ - + EMAPA:35415 MA:0002849 uberon @@ -482067,14 +482139,14 @@ see also VSAO:0000098 hypertrophic cartilage zone - + - + MA @@ -482428,7 +482500,7 @@ - + @@ -482450,14 +482522,14 @@ nail plate https://upload.wikimedia.org/wikipedia/commons/9/9f/Fingernail_label.jpg - + - + MA @@ -482488,8 +482560,8 @@ - - + + A subdivision of the face that is the anteriormost part of the lower jaw region. Surface structure that is the anteriormost region of the lower jaw.[TAO] mental @@ -482514,24 +482586,24 @@ chin http://upload.wikimedia.org/wikipedia/commons/6/60/Gray1195.png - + - + - + MESH - + FMA @@ -482596,7 +482668,7 @@ - + @@ -482621,14 +482693,14 @@ forehead http://upload.wikimedia.org/wikipedia/commons/8/83/Forhead_01_ies.jpg - + - + FMA @@ -482738,7 +482810,7 @@ - + todo - consider obsoletion in MA, this includes the femur. i.e. pelvic girdle bone or femur; note that this makes the ilium etc in MA hindlimb bones. in MA this is a hindlimb bone EMAPA:37308 @@ -482752,14 +482824,14 @@ bone of hip region - + - + MA @@ -482857,7 +482929,7 @@ - + Musculature system of the pharyngeal and head regions. in MA this is restricted to skeletal muscles EMAPA:37259 @@ -482871,7 +482943,7 @@ UBERON:0008229 craniocervical region musculature - + @@ -482884,7 +482956,7 @@ - + MA @@ -482979,8 +483051,8 @@ - - + + Subdivision of thorax, which in humans is the posterior part of the thorax and is demarcated from the chest by the external surface of the posterolateral part of the rib cage and the anterior surface of the thoracic vertebral column; together with the chest, it constitutes the thorax. EMAPA:37234 FMA:24217 @@ -482996,25 +483068,25 @@ UBERON:0008231 dorsal thoracic segment of trunk - + - + - + FMA MA - + FMA @@ -483083,7 +483155,7 @@ - + A muscle of back that is part of a lower back. EMAPA:37262 MA:0000502 @@ -483092,7 +483164,7 @@ UBERON:0008242 lower back muscle - + @@ -483105,7 +483177,7 @@ - + MA @@ -483138,7 +483210,7 @@ - + A muscle of back that is part of a dorsal thoracic segment of trunk. EMAPA:37261 MA:0000508 @@ -483147,7 +483219,7 @@ UBERON:0008243 upper back muscle - + @@ -483160,7 +483232,7 @@ - + MA @@ -483409,7 +483481,7 @@ - + @@ -483427,14 +483499,14 @@ UBERON:0008252 tube foot ampulla - + - + BTO @@ -483468,7 +483540,7 @@ - + @@ -483486,14 +483558,14 @@ UBERON:0008253 Aristotle's lantern - + - + BTO @@ -483933,9 +484005,9 @@ - - - + + + The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. The collagen fibers, running from the cementum to the alveolar bone, that suspend a tooth in its socket; they include apical, oblique, horizontal, and alveolar crest fibers, indicating that the orientation of the fibers varies at different levels[http://www.drugs.com/dict/desmodentium.html]. The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. It consist of cells, extracellular compartment of fibers. The cells are fibroblast, epithelial, undifferentiated mesenchymal cells, bone and cementum cells. The extracellular compartment consists of collagen fibers bundles embedded in ground substance. The PDL substance has been estimated to be 70% water and is thought to have a significant effect on the tooth's ability to withstand stress loads[WP][BTO:0001020, Wikipedia:Periodontal_fiber, https://github.com/obophenotype/uberon/issues/21]. @@ -483975,15 +484047,15 @@ https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg - + - + - + @@ -483996,20 +484068,20 @@ - + BTO - + true https://github.com/obophenotype/uberon/wiki/The-neural-crest - + PMID:19767574 Wikipedia:Dental_follicle @@ -485120,7 +485192,7 @@ - + @@ -485134,14 +485206,14 @@ UBERON:0008304 inner chondrogenic layer of perichondrium - + - + BTO @@ -485157,7 +485229,7 @@ - + The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers. BTO:0005091 Wikipedia:The_Free_Encyclopedia @@ -485165,14 +485237,14 @@ UBERON:0008305 outer fibrous layer of perichondrium - + - + BTO @@ -485266,9 +485338,9 @@ - - - + + + A short vessel of large caliber which arises from the internal pudendal between the two layers of fascia of the urogenital diaphragm; it passes medialward, pierces the inferior fascia of the urogenital diaphragm, and gives off branches which ramify in the bulb of the urethra and in the posterior part of the corpus spongiosum. It gives off a small branch to the bulbo-urethral gland. BTO:0005087 FMA:20864 @@ -485281,34 +485353,34 @@ UBERON:0008311 penile bulb artery - + - + - + - + Obol - + BTO - + FMA @@ -485342,7 +485414,7 @@ - + @@ -485369,7 +485441,7 @@ common penile artery - + @@ -485382,7 +485454,7 @@ - + BTO @@ -485424,9 +485496,9 @@ - - - + + + The deep artery of the penis (artery to the corpus cavernosum), one of the terminal branches of the internal pudendal, arises from that vessel while it is situated between the two fascia of the urogenital diaphragm (deep perineal pouch). It pierces the inferior fascia, and, entering the crus penis obliquely, runs forward in the center of the corpus cavernosum penis, to which its branches are distributed. BTO:0005086 @@ -485444,34 +485516,34 @@ deep artery of penis http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray543.png - + - + - + - + FMA - + BTO - + FMA @@ -485532,8 +485604,8 @@ - - + + The deep artery of clitoris is a branch of the internal pudendal artery. FMA:20870 @@ -485545,24 +485617,24 @@ deep artery of clitoris - + - + - + FMA - + FMA @@ -485585,8 +485657,8 @@ - - + + The dorsal artery of clitoris is a branch of the internal pudendal artery. FMA:20867 @@ -485597,11 +485669,11 @@ dorsal artery of clitoris - + - + @@ -485614,13 +485686,13 @@ - + FMA - + FMA @@ -485662,8 +485734,8 @@ - - + + @@ -485689,11 +485761,11 @@ vestibule of vagina http://upload.wikimedia.org/wikipedia/commons/f/f3/Scheidenvorhof.jpg - + - + @@ -485706,13 +485778,13 @@ - + BTO - + FMA @@ -485844,8 +485916,8 @@ - - + + The white core of the inferior olivary nucleus of the medulla oblongata, most prominent medially. BAMS:hio BTO:0002300 @@ -485863,11 +485935,11 @@ UBERON:0008333 hilum of inferior olivary complex - + - + @@ -485880,13 +485952,13 @@ - + FMA - + BTO @@ -485969,7 +486041,7 @@ - + A longitudinal sulcus on the anterior surface of the medulla oblongata, lateral to the pyramid, from which emerge the fibers of the hypoglossal nerve. BAMS:vls BTO:0002777 @@ -485992,7 +486064,7 @@ UBERON:0008335 ventrolateral sulcus of medulla oblongata - + @@ -486005,7 +486077,7 @@ - + BTO @@ -486367,7 +486439,7 @@ - + A saddle-shaped area that includes the nasal root and the lateral aspects of the nose. It lies between the glabella and the inferior boundary of the nasal bone, and extends laterally to the inner canth[WP]. MA:0002874 Wikipedia:Nasal_bridge @@ -486376,7 +486448,7 @@ nasal bridge - + @@ -486389,7 +486461,7 @@ - + MA @@ -486406,7 +486478,7 @@ - + The tissue that links the nasal tip to the nasal base, and separates the nares. It is the inferior margin of the nasal septum[EoM]. EMAPA:37832 FMA:59725 @@ -486419,14 +486491,14 @@ columella nasi - + - + FMA @@ -486569,7 +486641,7 @@ - + An epithelium that is part of a ileum. EMAPA:35423 @@ -486582,14 +486654,14 @@ ileal epithelium - + - + FMA @@ -486621,7 +486693,7 @@ - + An epithelium that is part of a duodenum. CALOHA:TS-2087 @@ -486635,14 +486707,14 @@ duodenal epithelium - + - + FMA @@ -486825,7 +486897,7 @@ - + An epithelium that is part of a distal tubule. See https://github.com/obophenotype/uberon/issues/1305 BTO:0003948 @@ -486834,14 +486906,14 @@ UBERON:0008408 distal tubular epithelium - + - + BTO @@ -486873,21 +486945,21 @@ - + An epithelium that is part of a buccal mucosa. BTO:0004803 uberon UBERON:0008420 buccal epithelium - + - + BTO @@ -487062,7 +487134,7 @@ - + A transverse foramen that is part of a vertebral bone 2. FMA:23999 SCTID:281221002 @@ -487071,14 +487143,14 @@ UBERON:0008427 transverse foramen of axis - + - + FMA-abduced-lr @@ -487100,7 +487172,7 @@ - + Main, posterior part of hyoglossus muscle (vs. chondroglossus) arising from the greater horn of the hyoid bone. FMA:46720 ceratoglossus muscle @@ -487109,14 +487181,14 @@ UBERON:0008428 ceratoglossus - + - + FMA @@ -487403,7 +487475,7 @@ - + In a cervical vertebra, the posterior arch forms about two-fifths of the circumference of the ring: it ends behind in the posterior tubercle, which is the rudiment of a spinous process and gives origin to the Recti capitis posteriores minores. FMA:23977 SCTID:181892007 @@ -487416,7 +487488,7 @@ posterior arch of atlas http://upload.wikimedia.org/wikipedia/commons/6/6b/Arcusposterioratlantis.png - + @@ -487429,7 +487501,7 @@ - + FMA @@ -487768,10 +487840,10 @@ - - - - + + + + A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. Modern humans are unique among hominids in having a flexor pollicis longus (FPL) muscle belly that is separate from that of the flexor digitorum profundus (FDP). While the FPL is not a separate muscle belly in extant great apes, a distinct tendon from the FDP belly might be present. In some individuals this tendon tend to act more like a ligament which restricts extension of the interphalangeal joint of the thumb. In orangutans there is a tendon similar in insertion and function to the FPL in humans, but which has an intrinsic origin on the oblique head of the adductor pollicis @@ -487788,46 +487860,46 @@ flexor pollicis longus muscle http://upload.wikimedia.org/wikipedia/commons/7/72/FPL.png - + - + - + - + - + Wikipedia - + The middle 2/4 of the volar surface of the radius and the adjacent interosseus membrane. dbpedia - + The base of the distal phalanx of the thumb dbpedia - + dbpedia @@ -487892,7 +487964,7 @@ - + Intertarsal articulations are the joints of the tarsus. The specific intertarsal articulations are: Talocalcaneal articulation Talocalcaneonavicular articulation Calcaneocuboid articulation Cuneonavicular articulation Cuboideonavicular articulation Intercuneiform articulation Cuneocuboid articulation. EMAPA:37762 FMA:44281 @@ -487918,7 +487990,7 @@ intertarsal joint http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray360.png - + @@ -487931,7 +488003,7 @@ - + two adjacent tarsals @@ -488084,8 +488156,8 @@ - - + + A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek 'psoa', the plural meaning 'muscles of the loin'. It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology. BTO:0001140 EMAPA:36157 @@ -488101,11 +488173,11 @@ UBERON:0008450 psoas muscle - + - + @@ -488118,13 +488190,13 @@ - + dbpedia-abduced - + dbpedia-abduced @@ -488172,7 +488244,7 @@ - + A muscle situated immediately behind the upper part of the Longus capitis that arises from the anterior surface of the lateral mass of the atlas, and from the root of its transverse process that inserts into the inferior surface of the basilar part of the occipital bone immediately in front of the foramen magnum. Flexion of neck at atlanto-occipital joint FMA:46312 @@ -488193,7 +488265,7 @@ rectus capitis anterior http://upload.wikimedia.org/wikipedia/commons/6/6f/Rectus_capitis_anterior_muscle.PNG - + @@ -488206,7 +488278,7 @@ - + basilar part Wikipedia @@ -488290,9 +488362,9 @@ - - - + + + A muscle that arises by a pointed tendon from the spinous process of the axis and inserts into the lateral part of the inferior nuchal line of the occipital bone and the surface of the bone immediately below the line. extend and rotate the atlanto-occipital joint @@ -488313,15 +488385,15 @@ rectus capitis posterior major http://upload.wikimedia.org/wikipedia/commons/d/dd/Rectus_capitis_posterior_major_muscle.PNG - + - + - + @@ -488334,21 +488406,21 @@ - + Dorsal ramus of C1 dbpedia - + Spinous process of the axis dbpedia - + Inferior nuchal line of the occipital bone dbpedia @@ -488420,9 +488492,9 @@ - - - + + + A muscle that arise from the tubercle on the posterior arch of the and is inserted into the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum, and also takes some attachment to the spinal dura. extends the head at the neck FMA:32526 @@ -488441,15 +488513,15 @@ rectus capitis posterior minor http://upload.wikimedia.org/wikipedia/commons/e/ed/Rectus_capitis_posterior_minor.png - + - + - + @@ -488462,21 +488534,21 @@ - + suboccpital nerve dbpedia - + the tubercle on the posterior arch of the atlas dbpedia - + the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum dbpedia @@ -488920,7 +488992,7 @@ - + The Abductor hallucis lies along the medial border of the pes and covers the origins of the plantar vessels and nerves. It arises from the medial process of the tuberosity of the calcaneus, from the laciniate ligament, from the plantar aponeurosis, and from the intermuscular septum between it and the Flexor digitorum brevis. The fibers end in a tendon, which is inserted, together with the medial tendon of the Flexor hallucis brevis, into the tibial side of the base of the first phalanx of the great toe. FMA:37448 @@ -488934,14 +489006,14 @@ abductor hallucis muscle https://upload.wikimedia.org/wikipedia/commons/b/bf/Abductor_hallucis.png - + - + tuberosity of the calcaneus dbpedia @@ -488977,10 +489049,10 @@ - - - - + + + + The abductor pollicis brevis is a muscle in the manus that functions as an abductor of the thumb. FMA:37373 @@ -488995,47 +489067,47 @@ abductor pollicis brevis muscle http://upload.wikimedia.org/wikipedia/commons/7/77/Musculusabductorpollicisbrevis.png - + - + - + - + - + Transverse carpal ligament the scaphoid and trapezium dbpedia - + Transverse carpal ligament the scaphoid and trapezium dbpedia - + Radial base of proximal phalanx of thumb and the thumb extensors dbpedia - + dbpedia @@ -489076,8 +489148,8 @@ - - + + @@ -489108,24 +489180,24 @@ cremaster muscle http://upload.wikimedia.org/wikipedia/commons/6/67/Gray1143.png - + - + - + dbpedia - + dbpedia @@ -489188,10 +489260,10 @@ - - - - + + + + The smallest of the three gluteal muscles, situated immediately beneath the gluteus medius. EMAPA:36230 @@ -489210,19 +489282,19 @@ gluteus minimus http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG - + - + - + - + @@ -489235,26 +489307,26 @@ - + FMA - + FMA - + Gluteal surface of ilium under gluteus medius. dbpedia - + Greater trochanter of the femur dbpedia @@ -489364,7 +489436,7 @@ - + The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap. FMA:13338 @@ -489383,14 +489455,14 @@ infrahyoid muscle https://upload.wikimedia.org/wikipedia/commons/4/48/Infrahyoid_muscles.png - + - + dbpedia @@ -489451,9 +489523,9 @@ - - - + + + The piriformis is a muscle in the gluteal region that originates from the anterior (front) part of the sacrum, the part of the spine in the gluteal region, and from the superior margin of the greater sciatic notch (as well as the sacroiliac joint capsule and the sacrotuberous ligament). It exits the pelvis through the greater sciatic foramen to insert on the greater trochanter of the femur. Its tendon often joins with the tendons of the superior gemellus, inferior gemellus, and obturator internus muscles prior to insertion[WP,modified]. EMAPA:36239 @@ -489471,15 +489543,15 @@ piriformis muscle http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG - + - + - + @@ -489492,19 +489564,19 @@ - + FMA - + dbpedia - + dbpedia @@ -489551,7 +489623,7 @@ - + The quadratus femoris is, as its name implies, a flat, quadrilateral skeletal muscle. Located on the posterior side of the hip joint, it is a strong lateral rotator and adductor of the thigh, but also acts to stabilize the femoral head in the Acetabulum. EMAPA:36241 FMA:22321 @@ -489564,7 +489636,7 @@ quadratus femoris http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG - + @@ -489577,7 +489649,7 @@ - + FMA @@ -489622,7 +489694,7 @@ - + A muscle that arises from the spinous processes of the third to the sixth thoracic vertebrae and inserts into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae[WP,modified]. Bilaterally: Extend the head & neck, Unilaterally: Lateral flexion to the same side, Rotation to the same side. FMA:22681 @@ -489634,7 +489706,7 @@ splenius cervicis http://upload.wikimedia.org/wikipedia/commons/2/26/Musculus_splenius_cervicis.PNG - + @@ -489647,7 +489719,7 @@ - + transverse processes of C1-C3 dbpedia @@ -489677,7 +489749,7 @@ - + The iliocostalis cervicis (cervicalis ascendens) arises from the angles of the third, fourth, fifth, and sixth ribs, and is inserted into the posterior tubercles of the transverse processes of the fourth, fifth, and sixth cervical vertebrae.. FMA:22704 SCTID:244851000 @@ -489689,7 +489761,7 @@ UBERON:0008546 iliocostalis cervicis muscle - + @@ -489702,7 +489774,7 @@ - + dbpedia @@ -489841,10 +489913,10 @@ - - - - + + + + The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration. FMA:46576 @@ -489862,47 +489934,47 @@ posterior crico-arytenoid http://upload.wikimedia.org/wikipedia/commons/9/9d/Musculuscricoarytenoideusposterior.png - + - + - + - + - + recurrent laryngeal branch of the vagus dbpedia - + posterior part of the cricoid dbpedia - + muscular process of the arytenoid cartilage dbpedia - + dbpedia @@ -489955,10 +490027,10 @@ - - - - + + + + The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). FMA:46579 @@ -489978,47 +490050,47 @@ lateral crico-arytenoid http://upload.wikimedia.org/wikipedia/commons/3/34/Musculuscricoarytenoideuslateralis.png - + - + - + - + - + recurrent laryngeal branch of the vagus dbpedia - + lateral part of the arch of the cricoid dbpedia - + muscular process of the arytenoid cartilage dbpedia - + dbpedia @@ -490140,10 +490212,10 @@ - - - - + + + + The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords. FMA:46588 NCIT:C33776 @@ -490168,19 +490240,19 @@ thyro-arytenoid http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png - + - + - + - + @@ -490193,27 +490265,27 @@ - + FMA - + recurrent laryngeal branch of the vagus dbpedia - + Inner surface of the thyroid cartilage dbpedia - + Anterior surface of arytenoid cartilage dbpedia @@ -490315,8 +490387,8 @@ - - + + @@ -490340,11 +490412,11 @@ vocalis muscle http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png - + - + @@ -490357,13 +490429,13 @@ - + FMA - + FEED:rd Wikipedia @@ -490406,9 +490478,9 @@ - - - + + + A muscle of the tongue that consists of a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue. FMA:46693 SCTID:244790006 @@ -490424,15 +490496,15 @@ superior longitudinal muscle of tongue http://upload.wikimedia.org/wikipedia/commons/3/30/Musculuslongitudinalissuperiorlinguae.png - + - + - + @@ -490445,19 +490517,19 @@ - + dbpedia - + Wikipedia - + edges of the tongue dbpedia @@ -490511,9 +490583,9 @@ - - - + + + A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue. EMAPA:18281 FMA:46695 @@ -490534,15 +490606,15 @@ transverse muscle of tongue http://upload.wikimedia.org/wikipedia/commons/1/14/Musculustransversuslinguae.png - + - + - + @@ -490555,19 +490627,19 @@ - + dbpedia - + Wikipedia - + sides of the tongue dbpedia @@ -490633,9 +490705,9 @@ - - - + + + A muscle of the tongue that is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ. EMAPA:18282 FMA:46696 @@ -490658,15 +490730,15 @@ vertical muscle of tongue http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray1020.png - + - + - + @@ -490679,20 +490751,20 @@ - + dbpedia - + Submucosal fibrous layer of dorsum of tongue dbpedia - + Inferior surface borders of tongue dbpedia @@ -490770,9 +490842,9 @@ - - - + + + The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side. The levator veli palatini is part of the soft palate that attaches to the cranial base, pharyngotympanic tube and the soft palate and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] FMA:46727 @@ -490788,15 +490860,15 @@ levator veli palatini http://upload.wikimedia.org/wikipedia/commons/a/a5/Musculuslevatorvelipalatini.png - + - + - + @@ -490809,20 +490881,20 @@ - + FMA-abduced-lr - + Pharyngeal Branch of Vagus dbpedia - + dbpedia @@ -490877,8 +490949,8 @@ - - + + The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate. The tensor veli palatini is a muscle of the soft palate that attaches to the cranial base and pharyngotympanic tube, wraps around the pterygoid hamulus and then attaches to the midline palatal raphe of the soft palate that is innervated by cranial nerve V3.[FEED] @@ -490896,11 +490968,11 @@ tensor veli palatini http://upload.wikimedia.org/wikipedia/commons/3/30/Musculustensorvelipalatini.png - + - + @@ -490913,13 +490985,13 @@ - + FMA-abduced-lr - + medial pterygoid of mandibular nerve dbpedia @@ -490969,7 +491041,7 @@ - + The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein. FMA:46769 SCTID:244731008 @@ -490983,7 +491055,7 @@ procerus http://upload.wikimedia.org/wikipedia/commons/7/76/Procerus.png - + @@ -490996,7 +491068,7 @@ - + Temporal Branch of the facial nerve dbpedia @@ -491040,8 +491112,8 @@ - - + + The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip. FMA:46777 SCTID:244733006 @@ -491056,11 +491128,11 @@ depressor septi nasi http://upload.wikimedia.org/wikipedia/commons/6/6c/Musculusdepressorseptinasi.PNG - + - + @@ -491073,14 +491145,14 @@ - + Buccal branch of the facial nerve dbpedia - + incisive fossa of the maxilla dbpedia @@ -491128,8 +491200,8 @@ - - + + The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella. FMA:46798 SCTID:244728007 @@ -491141,11 +491213,11 @@ depressor supercilii http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png - + - + @@ -491158,13 +491230,13 @@ - + dbpedia - + Medial aspect of bony orbit dbpedia @@ -491194,9 +491266,9 @@ - - - + + + @@ -491216,15 +491288,15 @@ levator labii superioris alaeque nasi http://upload.wikimedia.org/wikipedia/commons/1/1c/Musculuslevatorlabiisuperiorisalaequenasi.png - + - + - + @@ -491237,20 +491309,20 @@ - + buccal branch of facial nerve CN VII dbpedia - + dbpedia - + nostril and upper lip dbpedia @@ -491325,8 +491397,8 @@ - - + + @@ -491356,11 +491428,11 @@ zygomaticus major muscle http://upload.wikimedia.org/wikipedia/commons/7/7e/Zygomaticus.png - + - + @@ -491373,14 +491445,14 @@ - + zygomatic branch of facial nerve dbpedia - + Wikipedia @@ -491472,7 +491544,7 @@ - + Facial muscle attached to the modiolus, corner (angle) of the mouth, and zygomatic bone. This muscle is ventral to the zygomaticus minor and dorsal to the platysma muscle. In many mammals this muscle also has an attachment to the cartilage of the external ear, in which case it is called the auriculolabialis inferior. See Diogo 2008; Diogo et al., 2009; Burrows et al.., 2011., also DuBrul, 1980. FMA:46811 @@ -491493,14 +491565,14 @@ zygomaticus minor muscle http://upload.wikimedia.org/wikipedia/commons/4/46/Musculuszygomaticusminor.png - + - + dbpedia @@ -491546,8 +491618,8 @@ - - + + @@ -491569,11 +491641,11 @@ levator anguli oris - + - + @@ -491586,14 +491658,14 @@ - + buccal branches dbpedia - + dbpedia @@ -491658,10 +491730,10 @@ - - - - + + + + A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip and inferior to the lower lip (in humans this region is called the chin or mental region), the orbicularis oris muscle, and the mandible in the symphyseal region. See Diogo et al., 2009; Burrows et al., 2011). @@ -491677,19 +491749,19 @@ mentalis muscle http://upload.wikimedia.org/wikipedia/commons/3/37/Mentalis.png - + - + - + - + @@ -491702,26 +491774,26 @@ - + FMA-abduced-lr - + mandibular branch dbpedia - + dbpedia - + dbpedia @@ -491756,9 +491828,9 @@ - - - + + + The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth. EMAPA:37842 @@ -491775,15 +491847,15 @@ depressor anguli oris muscle http://upload.wikimedia.org/wikipedia/commons/3/36/Gray381.png - + - + - + @@ -491796,21 +491868,21 @@ - + mandibular branch dbpedia - + tubercle of mandible dbpedia - + modiolus of mouth dbpedia @@ -491881,7 +491953,7 @@ - + @@ -491909,7 +491981,7 @@ risorius muscle http://upload.wikimedia.org/wikipedia/commons/a/af/Musculusrisorius.png - + @@ -491922,7 +491994,7 @@ - + buccal branch dbpedia @@ -492235,7 +492307,7 @@ - + The transversus menti, or transverse muscle of the chin, is a facial muscle that is often considered to be the superficial fibers of the depressor anguli oris muscle which cross to the other side of the face. FMA:49080 @@ -492249,7 +492321,7 @@ transversus menti muscle http://upload.wikimedia.org/wikipedia/commons/3/36/Gray381.png - + @@ -492262,7 +492334,7 @@ - + dbpedia @@ -492297,9 +492369,9 @@ - - - + + + Any of the three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8[WP]. FMA:64829 NCIT:C33517 @@ -492322,15 +492394,15 @@ scalene muscle http://upload.wikimedia.org/wikipedia/commons/6/6e/Scalenus.png - + - + - + @@ -492343,20 +492415,20 @@ - + dbpedia - + first and second ribs dbpedia - + first and second ribs dbpedia @@ -492531,9 +492603,9 @@ - - - + + + The Innermost intercostal muscle is a layer of intercostal muscle beneath the intercostal nerves and internal intercostal muscles. These are divided into transversus thoracis anteriorly, lateral muscle slips laterally and subcostalis posteriorly. FMA:9758 @@ -492545,15 +492617,15 @@ innermost intercostal muscle - + - + - + @@ -492566,20 +492638,20 @@ - + dbpedia - + Upper border of a rib dbpedia - + Inferior border of the rib above dbpedia @@ -492603,9 +492675,9 @@ - - - + + + The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni. FMA:9759 @@ -492622,15 +492694,15 @@ subcostal muscle - + - + - + @@ -492643,20 +492715,20 @@ - + dbpedia - + inner surface of one rib dbpedia - + inner surface of the second or third rib below near its angle dbpedia @@ -492710,8 +492782,8 @@ - - + + The Scalenus anterior (Scalenus anticus), also known as anterior scalene muscle, lies deeply at the side of the neck, behind the Sternocleidomastoideus. It arises from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrC&, and descending, almost vertically, is inserted by a narrow, flat tendon into the scalene tubercle on the inner border of the first rib, and into the ridge on the upper surface of the rib in front of the subclavian groove. FMA:13385 SCTID:181742002 @@ -492725,11 +492797,11 @@ scalenus anterior https://upload.wikimedia.org/wikipedia/commons/b/bf/Scalenus_anterior.png - + - + @@ -492742,13 +492814,13 @@ - + dbpedia - + dbpedia @@ -492789,9 +492861,9 @@ - - - + + + The stylohyoid is a pharyngeal arch II muscle that participates in oral/pharygeal behaviors and is innervated by the stylohoid branch of the facial nerve and attaches to the stylohyal and the non-stylohyal part of the hyoid apparatus. The stylohyoid is a pharyngeal arch II muscle that participates in oral/pharygeal behaviors and is innervated by the stylohoid branch of the facial nerve and attaches to the stylohyal.[FEED] @@ -492810,15 +492882,15 @@ stylohyoid muscle http://upload.wikimedia.org/wikipedia/commons/9/94/Musculi_colli_stylohyoideus.svg - + - + - + @@ -492831,19 +492903,19 @@ - + dbpedia - + dbpedia - + greater cornu of hyoid bone dbpedia @@ -493187,7 +493259,7 @@ - + @@ -493217,14 +493289,14 @@ inner cell mass derived hypoblast - + - + Wikipedia @@ -493290,7 +493362,7 @@ - + @@ -493311,14 +493383,14 @@ hypaxial musculature https://github.com/obophenotype/uberon/issues/686 - + - + XAO @@ -493377,7 +493449,7 @@ - + @@ -493399,14 +493471,14 @@ epaxial musculature - + - + XAO @@ -493462,8 +493534,8 @@ - - + + The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla. FMA:13410 NCIT:C33644 @@ -493476,11 +493548,11 @@ subclavius http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray411subclavius.png - + - + @@ -493493,13 +493565,13 @@ - + dbpedia - + subclavian groove of clavicle dbpedia @@ -493551,7 +493623,7 @@ - + An embryonic structure that is derived from the inner cell mass and lies above the hypoblast and gives rise to the three primary germ layers. EHDAA2:0000444 EHDAA:42 @@ -493567,14 +493639,14 @@ The epiblast cells (appearing on day 8 of human embryonic development) make up a columnar epithelium with dense microvilli on the apical surface. During gastrulation, the epiblast cells undergo epithelial-to-mesenchymal transition and delaminate to become the loose mesenchyme of the primitive streak. The epiblast is present in postimplantation mouse embryos between E5.5-E7.5. inner cell mass derived epiblast - + - + Wikipedia @@ -493612,8 +493684,8 @@ - - + + An epiblast (generic) that develops_from a blastodisc. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. Kimmel et al, 1995.[TAO] @@ -493627,24 +493699,24 @@ blastodisc derived epiblast - + - + - + ZFA - + Wikipedia @@ -493883,7 +493955,7 @@ - + The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed. underdeveloped / not present in humans FMA:75824 @@ -493894,7 +493966,7 @@ third trochanter https://upload.wikimedia.org/wikipedia/commons/2/2b/Third_trochanter-tweaked.png - + @@ -493907,7 +493979,7 @@ - + FMA @@ -494027,7 +494099,7 @@ - + Any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity. todo - review the relationships for this and its subclasses; the relation should be bounded rather than part of, and contains should be used for the brain parts contained by the fossae FMA:321144 @@ -494035,14 +494107,14 @@ UBERON:0008789 cranial fossa - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -494117,7 +494189,7 @@ - + A rugal fold that is part of a stomach. FMA:15106 NCIT:C32660 @@ -494132,14 +494204,14 @@ UBERON:0008791 rugal fold of stomach - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -494197,7 +494269,7 @@ - + A rugal fold that is part of a vagina. FMA:19991 ruga of vagina @@ -494206,14 +494278,14 @@ UBERON:0008798 rugal fold of vagina - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -494252,7 +494324,7 @@ - + Any of the the series of transverse folds (ridges) of the mucosa located on the anterior third part of the secondary (hard) palate of most mammalian species. A masticatory vestige on the hard palate; one of several irregular, sometimes branching, crests of soft tissue that radiate from the region of the incisive papillae at their most anterior parts and extend a slight distance backward, crossing the hard palate and reaching laterally for variable distances. rugae are present on each side of the median palatal raphe and behind the incisive papillae, but their number and arrangement are species specific; together with the teeth and the tongue, rugae take part in mastication by helping to sense, hold and mash the food; rugae harbor various types of intraepithelial sensory structures (such as Merckel cells, corpuscular endings and free nerve endings), and play a sensory role when the food is pressed by the tongue against the hard palate[MP] @@ -494280,14 +494352,14 @@ transverse palatine fold - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -494422,7 +494494,7 @@ - + Primitive endoderm-derived tissue that lines the luminal surface of the mural trophectoderm[MP]. EMAPA:16053 uberon @@ -494431,7 +494503,7 @@ parietal endoderm - + @@ -494444,7 +494516,7 @@ - + MP @@ -494492,7 +494564,7 @@ - + @@ -494511,14 +494583,14 @@ UBERON:0008802 cheek pouch - + - + BTO @@ -494578,11 +494650,11 @@ - - - - - + + + + + The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx. The stylopharyngeus is a pharyngeal arch III muscle that participates in oral/pharyngeal behaviors and is innervated by the n. to stylopharyngeus branch of the glossopharyngeal n. and attaches to the hyoid apparatus and the pharynx.[FEED] @@ -494600,23 +494672,23 @@ stylopharyngeus muscle http://upload.wikimedia.org/wikipedia/commons/5/59/Musculusstylopharyngeus.png - + - + - + - + - + @@ -494629,31 +494701,31 @@ - + FMA-abduced-lr - + dbpedia - + Wikipedia - + dbpedia - + thyroid cartilage dbpedia @@ -494795,7 +494867,7 @@ - + @@ -494816,14 +494888,14 @@ coagulating gland - + - + MA EMAPA @@ -495117,7 +495189,7 @@ - + The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds. apex of cochlea cochlear apex @@ -495132,7 +495204,7 @@ helicotrema http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png - + @@ -495145,7 +495217,7 @@ - + Wikipedia @@ -495258,8 +495330,8 @@ - - + + @@ -495281,24 +495353,24 @@ pharyngeal slit https://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gill_slits.png/280px-Gill_slits.png - + - + - + PMID:11961109 - + cjm @@ -495363,20 +495435,20 @@ - + An endoderm that is part of a thymus primordium. uberon UBERON:0008817 thymus primordium endoderm - + - + PMID:16313389 @@ -495392,7 +495464,7 @@ - + The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind. FMA:9827 NCIT:C33684 @@ -495406,14 +495478,14 @@ superior mediastinum http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png - + - + FMA @@ -495448,8 +495520,8 @@ - - + + Anterior, middle and posterior mediastinum. FMA:9828 SCTID:243950006 @@ -495459,24 +495531,24 @@ UBERON:0008819 inferior mediastinum - + - + - + FMA-propagated - + FMA @@ -495498,7 +495570,7 @@ - + The anterior mediastinum exists only on the left side where the left pleura diverges from the mid-sternal line. It is narrow, above, but widens out a little below. FMA:9838 @@ -495513,14 +495585,14 @@ anterior mediastinum http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png - + - + FMA @@ -495561,7 +495633,7 @@ - + The middle mediastinum is the broadest part of the interpleural space. It is made up of the pericardial sac and its contents. FMA:9839 NCIT:C33123 @@ -495575,14 +495647,14 @@ middle mediastinum http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png - + - + FMA @@ -495617,7 +495689,7 @@ - + The posterior mediastinum is an irregular triangular space running parallel with the vertebral column. FMA:9840 NCIT:C33368 @@ -495631,14 +495703,14 @@ posterior mediastinum http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png - + - + FMA @@ -495684,8 +495756,8 @@ - - + + A brain that develops_from a neural tube. a reasoner should automatically classify all the vertebrate ontology brain classes here vertebrate brain @@ -495694,11 +495766,11 @@ neural tube derived brain https://github.com/obophenotype/uberon/issues/338 - + - + @@ -495711,13 +495783,13 @@ - + FMA - + definitional @@ -495745,7 +495817,7 @@ - + Any duct branching of of the main epididymis duct. EMAPA:36525 FMA:18297 @@ -495759,7 +495831,7 @@ UBERON:0008824 duct of epididymis - + @@ -495772,7 +495844,7 @@ - + FMA @@ -495959,8 +496031,8 @@ - - + + @@ -495980,11 +496052,11 @@ presphenoid bone - + - + @@ -495997,13 +496069,13 @@ - + MA - + ISBN:0073040584 @@ -496229,8 +496301,8 @@ - - + + A nerve arising from the second and third cervical nerves from the cervical plexus and innervating the skin over the parotid gland, the skin of part of the ear, the adjacent portion of the scalp, cheek, and angle of the jaw. FMA:6872 @@ -496245,24 +496317,24 @@ great auricular nerve http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray805.png - + - + - + Wikipedia - + FMA Wikipedia @@ -496299,7 +496371,7 @@ - + The first body segment in annelids worms. It is in front of (but does not include) the mouth, being usually a small shelf- or lip-like extension over the dorsal side of the mouth. Often functions like a kind of overlip when the animal is feeding. sometimes bears antennae and eyes @@ -496310,14 +496382,14 @@ UBERON:0008834 prostomium - + - + Wikipedia @@ -496346,9 +496418,9 @@ - - - + + + An out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. Constitutes the first morphological sign of the embryonic liver. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile ducts. in mice, the hepatic diverticulum forms by E9 and expands into an obvious liver bud by E10 The caudal part of the septum transversum is invaded by the hepatic diverticulum which divides within it to form the liver and thus gives rise to the ventral mesentery of the foregut. @@ -496367,15 +496439,15 @@ hepatic diverticulum http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png - + - + - + @@ -496388,20 +496460,20 @@ - + caudal part EHDAA2 - + EHDAA2 - + EHDAA2 @@ -496437,18 +496509,18 @@ - - + + BTO:0001642 uberon UBERON:0008836 liver bud - + - + @@ -496461,13 +496533,13 @@ - + cjm - + http://www.stembook.org/node/512 @@ -496551,8 +496623,8 @@ - - + + An autopod pad that is in the metacarpal region. the EMAPA term refers to the plural EMAPA:18489 @@ -496564,24 +496636,24 @@ UBERON:0008839 palmar pad - + - + - + EMAPA - + cjm @@ -496620,8 +496692,8 @@ - - + + An autopod pad that is in the metatarsal region. The canine metatarsal pad is large and heart-shaped, and functions to cushion the foot. The pad is covered by a naked, densely cornified epidermis, which is usually highly pigmented and is the toughest region of the canine skin. The digital cushion or bulk of the foot pad is composed of a subcutaneous adipose tissue, partitioned by reticular, collagenous and elastic fibres. The subcutis of the canine footpads contains sweat glands embedded in the adipose tissue. The ducts of these glands channel through the thick epidermis of the foot pad. The secretions from these glands function as territorial or trail markers[MURDOCH:1334]. EMAPA:18507 @@ -496633,24 +496705,24 @@ UBERON:0008840 plantar pad - + - + - + EMAPA - + cjm @@ -496708,7 +496780,7 @@ - + The cranial atrophic portion of the urogenital ridge attached to the cranial pole of the intraabdominal embryonic testis. SCTID:279592009 Wikipedia:Scrotal_ligament @@ -496717,7 +496789,7 @@ UBERON:0008842 suspensory ligament of testis - + @@ -496730,7 +496802,7 @@ - + Obol @@ -496927,10 +496999,10 @@ - - - - + + + + Dense regular connective tissue connecting two or more adjacent skeletal elements[VSAO,modified]. logical definition deliberately made strict to avoid classifying MA:spiral ligament as both nonskeletal and skeletal. see https://github.com/obophenotype/mouse-anatomy-ontology/issues/71 Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ.[VSAO] @@ -496955,44 +497027,44 @@ skeletal ligament https://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg - + - + - + - + - + AEO - + AEO - + bones or cartilage organs - + VSAO @@ -497056,7 +497128,7 @@ - + @@ -497083,7 +497155,7 @@ The ligament runs in the broad ligament of the uterus, which is a fold of peritoneum rather than a fibrous ligament. Specifically, it is located in the parametrium ovarian ligament - + @@ -497096,7 +497168,7 @@ - + lower gubernaculum Wikipedia @@ -497132,7 +497204,7 @@ - + Connects the cranial tip of the future gonad to the dorsocranial abdominal cavity. TODO - check - add cranial ovarian susp ligaments EMAPA:30068 @@ -497140,7 +497212,7 @@ UBERON:0008848 cranial suspensory ligament - + @@ -497153,7 +497225,7 @@ - + EMAPA @@ -497349,7 +497421,7 @@ - + A group of granular epithelial cells in the uterine muscle beneath the placenta that develops during pregnancy in rodents and some other species. MA:0001723 @@ -497359,14 +497431,14 @@ placenta metrial gland - + - + MP @@ -497398,8 +497470,8 @@ - - + + @@ -497432,24 +497504,24 @@ stomach muscularis externa - + - + - + FMA - + MA-abduced @@ -497495,7 +497567,7 @@ - + @@ -497531,14 +497603,14 @@ stomach smooth muscle circular layer - + - + FMA @@ -497586,7 +497658,7 @@ - + @@ -497618,7 +497690,7 @@ pyloric canal https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg - + @@ -497631,7 +497703,7 @@ - + Wikipedia @@ -497678,8 +497750,8 @@ - - + + @@ -497705,11 +497777,11 @@ cardiac gastric gland - + - + @@ -497722,13 +497794,13 @@ - + FMA - + ISBN:0073040584 @@ -497793,7 +497865,7 @@ - + Any of the branched tubular glands in the mucosa of the fundus and body of the stomach that secrete most of the digestive substances secreted by the stomach. todo, check this class uberon @@ -497801,7 +497873,7 @@ intermediate gastric gland - + @@ -497814,7 +497886,7 @@ - + MP @@ -497847,8 +497919,8 @@ - - + + @@ -497873,11 +497945,11 @@ pyloric gastric gland http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png - + - + @@ -497890,13 +497962,13 @@ - + ISBN:0073040584 - + Wikipedia:Tubular_gland @@ -497937,7 +498009,7 @@ - + @@ -497970,7 +498042,7 @@ The only layer of the three which is not seen in other parts of the digestive system[WP]. stomach smooth muscle inner oblique layer - + @@ -497983,7 +498055,7 @@ - + MP @@ -498101,7 +498173,7 @@ - + @@ -498115,14 +498187,14 @@ enamel knot - + - + MP @@ -498138,7 +498210,7 @@ - + @@ -498156,14 +498228,14 @@ trabecular network of bone - + - + MP @@ -498394,7 +498466,7 @@ - + @@ -498427,14 +498499,14 @@ hypodermis skeletal muscle layer - + - + MP-def @@ -498469,7 +498541,7 @@ - + @@ -498502,14 +498574,14 @@ epidermal-dermal junction - + - + MP @@ -498608,7 +498680,7 @@ - + subclasses (anterior, superior, posterior) can be added on request EMAPA:37434 FMA:61035 @@ -498621,7 +498693,7 @@ UBERON:0008879 ligament of pinna - + @@ -498634,7 +498706,7 @@ - + MA @@ -498668,7 +498740,7 @@ - + Rearmost segment of annelid worms. periproct Wikipedia:Periproct @@ -498677,14 +498749,14 @@ UBERON:0008880 annelid pygidium - + - + Wikipedia @@ -498718,8 +498790,8 @@ - - + + @@ -498742,24 +498814,24 @@ rostral migratory stream - + - + - + BTO-modified - + MP-modified @@ -499013,7 +499085,7 @@ - + @@ -499036,7 +499108,7 @@ UBERON:0008886 pulmonary vascular system - + @@ -499049,7 +499121,7 @@ - + FMA @@ -499316,9 +499388,9 @@ - - - + + + A primordium or bud that develops into a gill. TAO:0001107 XAO:0000448 @@ -499331,15 +499403,15 @@ UBERON:0008894 pharyngeal gill precursor - + - + - + @@ -499352,19 +499424,19 @@ - + XAO - + XAO - + ZFA @@ -499405,8 +499477,8 @@ - - + + Subdivision of endoskeleton derived from pharyngeal arches. @@ -499439,24 +499511,24 @@ splanchnocranium http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg - + - + - + https://github.com/obophenotype/uberon/issues/83 - + redundant Grays PMID:11237469 @@ -499762,7 +499834,7 @@ - + Lateral protrusion of the third ventricle. lateral recess TAO:0000231 @@ -499773,7 +499845,7 @@ UBERON:0008902 lateral recess of third ventricle - + @@ -499786,7 +499858,7 @@ - + ZFA @@ -499846,14 +499918,14 @@ - + - + Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Type of mechanoreceptive organ of the lateral line which are arranged in lines on the body surface. These organs are constituted by hair cells and supporting cells and it is located in the epidermis with its hair cells exposed to the surface. Absent in some caecilians. These receptors receive afferent and efferent innervations.[AAO] Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO] @@ -499872,24 +499944,24 @@ neuromast - + - + - + DOI:10.1038/ncomms1502 - + ZFA @@ -499984,7 +500056,7 @@ - + Cranial nerves that carry afferent and efferent fibers for the lateral line system. Any of the sensory nerves that innervate mechano- and electroreceptors of the lateral line system. The lateral line nerves may be separated in two components, anterior and posterior, in relation to the position of its roots with respect to the otic capsule. These nerves develop from lateral line placodes.[AAO] relationship loss: innervates lateral line receptor organ (AAO:0001001)[AAO] @@ -499997,14 +500069,14 @@ UBERON:0008906 lateral line nerve - + - + NCBIBook:NBK53175 @@ -500064,7 +500136,7 @@ - + Skeletal element that forms superficially in the organism, usually in association with the ectoderm[VSAO]. Intramembranous bone that forms superficially in the organism.[TAO] other AOs are not yet in sync with this classification @@ -500079,7 +500151,7 @@ UBERON:0008907 dermal bone - + @@ -500098,7 +500170,7 @@ - + VSAO @@ -500236,8 +500308,8 @@ - - + + Bone element that is located on the surface of a cartilage element. Replacement bone that forms within the connective tissue surrounding cartilage.[TAO] AAO:0010779 @@ -500251,11 +500323,11 @@ include the subtyping under 'replacement bone', for consistency with ZFA, but VSAO does not include this intermediate class perichondral bone - + - + @@ -500268,13 +500340,13 @@ - + VSAO - + ZFA @@ -500873,7 +500945,7 @@ - + @@ -500904,7 +500976,7 @@ somatosensory cortex - + @@ -500917,7 +500989,7 @@ - + BTO @@ -500969,7 +501041,7 @@ - + (Chapin & Lin, 1984, rat): the region considered as the SI cortex is not a cytoarchitecturally homogeneous structure but consists instead of a patchwork array of areas containing dense aggregations of layer IV granule cells, surrounded by granule-cell-sparse regions. As was shown by Welker (b71,b76), and in our own mapping studies (see Fig. 3), this discontinuous pattern of granular, or koniocortical, zones contains within itself a map of the ratbs cutaneous periphery. There are clear subtypes within this cytoarchitectural subregion, notably including the bgranular aggregateb type of cytoarchitecture characteristic of the paw, limb, and mystacial vibrissae areas, and the bbarrel-fieldb type (originally described by Woolsey and Van der Loos, b70) seen in the nose and perioral regions. In the mouse, but not the rat, such barrels also cover the whole whisker representation (Welker and Woolsey, b74). ABA disjointness - Removed relationship: part_of UBERON:0001870 frontal cortex S1 @@ -500991,14 +501063,14 @@ primary somatosensory cortex - + - + DHBA MA NIFSTD @@ -501059,8 +501131,8 @@ - - + + The area of the upper bank of the lateral sulcus that is involved in somatic sensation. TODO - check brodmann S2 @@ -501077,24 +501149,24 @@ secondary somatosensory cortex - + - + - + MA - + WP @@ -501160,7 +501232,7 @@ - + @@ -501175,14 +501247,14 @@ UBERON:0008936 gastropod genital pore - + - + BTO @@ -501243,7 +501315,7 @@ - + @@ -501256,7 +501328,7 @@ UBERON:0008939 pedal ganglion - + @@ -501269,7 +501341,7 @@ - + BTO @@ -501285,7 +501357,7 @@ - + @@ -501298,7 +501370,7 @@ UBERON:0008940 parietal ganglion - + @@ -501311,7 +501383,7 @@ - + BTO @@ -501327,7 +501399,7 @@ - + @@ -501341,7 +501413,7 @@ UBERON:0008941 pleural ganglion - + @@ -501354,7 +501426,7 @@ - + BTO @@ -501519,7 +501591,7 @@ - + A parenchyma that is part of a lung. EMAPA:35522 FMA:27360 @@ -501532,7 +501604,7 @@ UBERON:0008946 lung parenchyma - + @@ -501545,7 +501617,7 @@ - + FMA @@ -502013,7 +502085,7 @@ - + Anterioinferior portion of left upper lung lobe. the lingula of the left lung in humans is not normally considered a true lobe @@ -502032,7 +502104,7 @@ UBERON:0008954 lingula of left lung - + @@ -502045,7 +502117,7 @@ - + ISBN:0123813611 @@ -502132,21 +502204,21 @@ - + A layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum. Wikipedia:Involucrum uberon UBERON:0008956 involucrum - + - + Wikipedia @@ -502162,21 +502234,21 @@ - + A piece of dead bone that has become separated during the process of necrosis from normal/sound bone.. Wikipedia:Sequestrum uberon UBERON:0008957 sequestrum - + - + Wikipedia @@ -502192,7 +502264,7 @@ - + @@ -502210,14 +502282,14 @@ UBERON:0008958 cetacean involucrum - + - + Wikipedia:Evolution_of_cetaceans @@ -502233,9 +502305,9 @@ - - - + + + A hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone. In extant primates, the structure is found in tarsiers, lemurs, and lorises[WP]. When present in marsupials, it usually forms the alisphenoid; in placentals variously constructed of ectotympanic, entotympanic, petrosal, or a combination of these and others may be formed from entotympanic and ectotympanic @@ -502252,34 +502324,34 @@ auditory bulla http://upload.wikimedia.org/wikipedia/commons/a/af/Toothed_whale_sound_production.png - + - + - + - + ISBN:0073040584 - + Wikipedia - + Rose @@ -502514,7 +502586,7 @@ - + @@ -502530,7 +502602,7 @@ UBERON:0008964 abdominal ganglion of visceral hump - + @@ -502543,7 +502615,7 @@ - + BTO @@ -502571,7 +502643,7 @@ - + The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers. WP suggests a merge with cerebral white matter BAMS:cw @@ -502594,14 +502666,14 @@ centrum semiovale http://upload.wikimedia.org/wikipedia/commons/9/95/Gray752.png - + - + FMA @@ -502678,7 +502750,7 @@ - + A sac containing the developing tooth and its odontogenic organ. The dental follicle (DF) differentiates into the periodontal ligament. In addition, it may be the precursor of other cells of the periodontium, including osteoblasts, cementoblasts and fibroblasts. They develop into the alveolar bone, the cementum with Sharpey's fibers and the periodontal ligament fibers respectively. BTO:0000337 EMAPA:35275 @@ -502692,14 +502764,14 @@ UBERON:0008969 dental follicle - + - + PMID:19767574 @@ -502728,8 +502800,8 @@ - - + + The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste. BTO:0000646 CALOHA:TS-0202 @@ -502742,24 +502814,24 @@ UBERON:0008971 left colon - + - + - + BTO - + BTO @@ -502787,8 +502859,8 @@ - - + + The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption. BTO:0000649 NCIT:C12383 @@ -502800,24 +502872,24 @@ UBERON:0008972 right colon - + - + - + BTO - + BTO @@ -502918,7 +502990,7 @@ - + @@ -502937,7 +503009,7 @@ snake venom glands are modified salivary glands. In future this class may be merged into a more general modified salivary gland venom gland class snake venom gland - + @@ -502950,7 +503022,7 @@ - + ISBN:0073040584 @@ -502978,7 +503050,7 @@ - + @@ -503000,14 +503072,14 @@ pes anserinus of tibia https://upload.wikimedia.org/wikipedia/commons/b/b1/Pes_anserinus.png - + - + BTO @@ -503163,7 +503235,7 @@ - + @@ -503186,7 +503258,7 @@ fascia - + @@ -503199,7 +503271,7 @@ - + fasciae connect muscles to other muscles @@ -503238,7 +503310,7 @@ - + The functional tissue of the kidney, consisting of the nephrons. BTO:0003604 FMA:15574 @@ -503249,7 +503321,7 @@ UBERON:0008987 renal parenchyma - + @@ -503262,7 +503334,7 @@ - + FMA @@ -503372,7 +503444,7 @@ - + The part of the chorion where the villi persist, forming the foetal part of the placenta. BTO:0003677 SCTID:37333001 @@ -503381,7 +503453,7 @@ UBERON:0008992 chorion frondosum - + @@ -503394,7 +503466,7 @@ - + BTO @@ -503636,7 +503708,7 @@ - + @@ -503651,14 +503723,14 @@ UBERON:0008999 hoof lamina - + - + BTO @@ -503754,7 +503826,7 @@ - + @@ -503778,14 +503850,14 @@ placental membrane - + - + BTO @@ -504004,7 +504076,7 @@ - + @@ -504026,14 +504098,14 @@ UBERON:0009009 carotid sinus nerve - + - + FMA @@ -504247,7 +504319,7 @@ - + EMAPA:35241 FMA:312260 MA:0001239 @@ -504258,14 +504330,14 @@ UBERON:0009016 ciliary stroma - + - + MA @@ -504351,7 +504423,7 @@ - + @@ -504375,7 +504447,7 @@ adrenal gland X zone - + @@ -504388,7 +504460,7 @@ - + MA @@ -504783,7 +504855,7 @@ - + @@ -504801,7 +504873,7 @@ sulcus ampullaris - + @@ -504814,7 +504886,7 @@ - + MA @@ -504846,7 +504918,7 @@ - + A germinal center that is located in a lymph node. germinal center @@ -504866,14 +504938,14 @@ lymph node germinal center - + - + MA @@ -504905,8 +504977,8 @@ - - + + The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone. FMA:20687 @@ -504925,24 +504997,24 @@ http://upload.wikimedia.org/wikipedia/commons/0/07/Gray586.png http://upload.wikimedia.org/wikipedia/commons/7/74/Gray586.png - + - + - + FMA - + FMA @@ -504999,7 +505071,7 @@ - + The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries. FMA:20737 @@ -505015,14 +505087,14 @@ superficial circumflex iliac artery http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png - + - + FMA @@ -505712,20 +505784,20 @@ - + SCTID:62426003 uberon UBERON:0009064 cervical air sac - + - + ISBN:0073040584 @@ -505735,7 +505807,7 @@ - + SCTID:17911004 uberon @@ -505744,14 +505816,14 @@ UBERON:0009065 anterior thoracic air sac - + - + ISBN:0073040584 @@ -505767,7 +505839,7 @@ - + SCTID:10576005 uberon caudal thoracic air sac @@ -505775,14 +505847,14 @@ UBERON:0009066 posterior thoracic air sac - + - + ISBN:0073040584 @@ -505792,20 +505864,20 @@ - + SCTID:43701009 uberon UBERON:0009067 abdominal air sac - + - + ISBN:0073040584 @@ -506064,21 +506136,21 @@ - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medullar parallel to the descending limb KUPO:0001003 uberon UBERON:0009089 inner medulla vasa recta descending limb - + - + KUPO @@ -506094,21 +506166,21 @@ - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medullar parallel to the descending limb KUPO:0001004 uberon UBERON:0009090 outer medulla vasa recta descending limb - + - + KUPO @@ -506124,7 +506196,7 @@ - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the ascending limb KUPO:0001005 @@ -506133,14 +506205,14 @@ vasa recta ascending limb - + - + KUPO @@ -506156,21 +506228,21 @@ - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medulla parallel to the ascending limb KUPO:0001006 uberon UBERON:0009092 inner medulla vasa recta ascending limb - + - + KUPO @@ -506186,21 +506258,21 @@ - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medulla parallel to the ascending limb KUPO:0001007 uberon UBERON:0009093 outer medulla vasa recta ascending limb - + - + KUPO @@ -506216,7 +506288,7 @@ - + KUPO:0001009 papillary tip @@ -506226,14 +506298,14 @@ tip of renal papilla - + - + KUPO @@ -506594,21 +506666,21 @@ - + A mature thymus that is entirely part of thoracic region. uberon UBERON:0009115 thoracic thymus - + - + MA-modified @@ -506648,7 +506720,7 @@ - + @@ -506662,14 +506734,14 @@ Genes: FOXN1 thymoid - + - + PMID:21293377 @@ -506733,7 +506805,7 @@ - + . pouch Wikipedia:Pouch_(marsupial) @@ -506742,14 +506814,14 @@ UBERON:0009118 marsupium - + - + we consider the fetus a type of or stage of the embryo @@ -506777,7 +506849,7 @@ - + The network-like non-segmented cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali, connected to the heart and surrounding respiratory tissue. developmental relationship needs to be changed if the scope is broadened, as NC is vertebrate-specific @@ -506790,14 +506862,14 @@ branchial basket http://dev.duit.uwa.edu.au/zoology/media/lamp/E19.jpg - + - + PMID:19924811 @@ -506820,7 +506892,7 @@ - + @@ -506839,7 +506911,7 @@ gill filament - + @@ -506852,7 +506924,7 @@ - + ZFA @@ -506884,7 +506956,7 @@ - + @@ -506892,7 +506964,7 @@ - + Nerve carrying fibers from the vomeronasal organ epithelium to the accessory olfactory bulb. Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb.[AAO] In the human this disappears before birth @@ -506908,7 +506980,7 @@ UBERON:0009121 vomeronasal nerve - + @@ -506921,14 +506993,14 @@ - + - + Wikipedia @@ -506940,7 +507012,7 @@ - + ISBN:0471888893 @@ -506974,7 +507046,7 @@ - + The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary. consider adding more detailed spatial placement - e.g. oral ectoderm and/or rostal ectoderm Fate-mapping studies in amphibian, chick and mouse embryos (Eagleson et al., 1986; 1995; Couly and Le Douarin, 1985; Cobos et al., 2001; Osumi-Yamachita et al., 1994; Kawamura et al., 2002) have shown that the cells contributing to the adenohypophysis develop at the midline of the anterior neural ridge, which delineates the rostral boundary of the neural plate, a region devoid of neural crest. The anterior neural ridge also gives rise to the olfactory placodes and some forebrain tissues including the olfactory bulbs (reviewed in Papalopulu, 1995). Ablation of this region in chick embryos at the 2-4 somite stage confirmed these lineage analyses as it prevented formation of Rathke's pouch and any further pituitary development (elAmraoui and Dubois, 1993). Upon head folding, the oral ectoderm cells of the adenohypophyseal placode invaginate towards the prospective ventral diencephalon to form Rathke's pouch, the anlage of the adenohypophysis. Rathke's pouch starts as an invagination of the oral ectoderm in response to inductive signals from the prospective diencephalon. The region of the diencephalon above the pouch is known as the infundibulum and forms the posterior lobe of the pituitary or neurohypohysis (Figure 3). While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathke's pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head (reviewed in Pogoda and Hammerschmidt; 2009) @@ -506988,7 +507060,7 @@ adenohypophyseal placode - + @@ -507001,7 +507073,7 @@ - + ZFA @@ -507245,7 +507317,7 @@ - + Cranial ganglion which develops from an epibranchial placode. TAO:0001555 ZFA:0001555 @@ -507255,7 +507327,7 @@ Epibranchial ganglia orchestrate the development of the cranial neurogenic crest epibranchial ganglion - + @@ -507268,7 +507340,7 @@ - + NCBIBook:NBK53175 @@ -507372,8 +507444,8 @@ - - + + Endocardium that is part of the right atrium. EHDAA2:0000274 FMA:7281 @@ -507387,11 +507459,11 @@ UBERON:0009129 right atrium endocardium - + - + @@ -507404,13 +507476,13 @@ - + EHDAA2 - + EHDAA2 @@ -507444,14 +507516,14 @@ - + RETIRED_EHDAA2:0000411 SCTID:361433003 uberon UBERON:0009130 dorsal meso-duodenum - + @@ -507464,7 +507536,7 @@ - + EHDAA2 @@ -507488,9 +507560,9 @@ - - - + + + One of a group of three muscles fibularis (peronæus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals. EHDAA2:0001450 EHDAA:8297 @@ -507509,34 +507581,34 @@ peroneus - + - + - + - + EHDAA2 - + wikipedia - + wikipedia @@ -507636,7 +507708,7 @@ - + only a vestige of the right duct in the adult hagfish (21)[PMID:20959416, S1] EHDAA2:0004535 FMA:70310 @@ -507646,7 +507718,7 @@ UBERON:0009138 right common cardinal vein - + @@ -507659,7 +507731,7 @@ - + EHDAA2 @@ -507770,7 +507842,7 @@ - + A vein that is part of a craniocervical region. EHDAA2:0004542 SCTID:32945007 @@ -507781,14 +507853,14 @@ UBERON:0009141 craniocervical region vein - + - + EHDAA2 @@ -507816,7 +507888,7 @@ - + @@ -507833,14 +507905,14 @@ UBERON:0009142 entire embryonic mesenchyme - + - + EHDAA2 @@ -507882,7 +507954,7 @@ - + EMAPA:16549 RETIRED_EHDAA2:0001454 pharyngeal region @@ -507890,14 +507962,14 @@ UBERON:0009145 pharyngeal region of foregut - + - + EHDAA2 @@ -508020,8 +508092,8 @@ - - + + A sphenoid endochondral element that is composed primarily of a pre-cartilage condensation. EHDAA2:0003446 EMAPA:18015 @@ -508029,11 +508101,11 @@ UBERON:0009191 sphenoid bone pre-cartilage condensation - + - + @@ -508052,13 +508124,13 @@ - + EHDAA2 - + EHDAA2 @@ -508074,9 +508146,9 @@ - - - + + + EHDAA2:0003447 EMAPA:18013 basi-sphenoid pre-cartilage condensation @@ -508084,15 +508156,15 @@ UBERON:0009192 basisphenoid pre-cartilage condensation - + - + - + @@ -508105,19 +508177,19 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -508144,7 +508216,7 @@ - + @@ -508158,7 +508230,7 @@ UBERON:0009193 sphenoid cartilage element - + @@ -508171,7 +508243,7 @@ - + EHDAA2 @@ -508193,8 +508265,8 @@ - - + + EHDAA2:0000166 EMAPA:18338 VHOG:0001338 @@ -508203,11 +508275,11 @@ UBERON:0009194 basisphenoid cartilage condenstion - + - + @@ -508220,13 +508292,13 @@ - + EHDAA2 - + EHDAA2 @@ -508242,8 +508314,8 @@ - - + + The dorsal part of the cloacal membrane following its partition by the urorectal septum. EHDAA2:0004018 NCIT:C34105 @@ -508254,24 +508326,24 @@ During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] anal membrane - + - + - + EHDAA2 - + EHDAA2 @@ -508329,8 +508401,8 @@ - - + + A basioccipital endochondral element that is composed primarily of a pre-cartilage condensation. EHDAA2:0000165 EHDAA:6033 @@ -508340,11 +508412,11 @@ UBERON:0009197 basioccipital pre-cartilage condensation - + - + @@ -508357,13 +508429,13 @@ - + EMAPA - + EHDAA2 @@ -508447,20 +508519,20 @@ - + Any suture between facial bones. uberon UBERON:0009199 facial suture - + - + between two adjacent facial bones @@ -508549,7 +508621,7 @@ - + This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the descending limb KUPO:0001002 @@ -508558,14 +508630,14 @@ vasa recta descending limb - + - + KUPO @@ -508593,7 +508665,7 @@ - + A suture joining the nasal bones. nasal suture FMA:52959 @@ -508607,14 +508679,14 @@ UBERON:0009203 internasal suture - + - + between both nasal bones @@ -508666,8 +508738,8 @@ - - + + Mesenchyme that is part of a medial nasal prominence. EHDAA2:0001077 @@ -508677,11 +508749,11 @@ UBERON:0009204 medial nasal process mesenchyme - + - + @@ -508694,13 +508766,13 @@ - + EHDAA2 - + EHDAA2 @@ -508732,7 +508804,7 @@ - + Mesenchyme that is part of a lateral nasal prominence. EHDAA2:0000917 EMAPA:16807 @@ -508742,14 +508814,14 @@ UBERON:0009205 lateral nasal process mesenchyme - + - + EHDAA2 @@ -508782,8 +508854,8 @@ - - + + An ectoderm that is part of a lateral nasal prominence. EHDAA2:0000918 EMAPA:16806 @@ -508792,11 +508864,11 @@ UBERON:0009206 lateral nasal process surface ectoderm - + - + @@ -508809,13 +508881,13 @@ - + EHDAA2 - + EHDAA2 @@ -508861,7 +508933,7 @@ - + @@ -508901,14 +508973,14 @@ each membrane is initially composed of an inner layer formed by the endodermal lining of a branchial pouch and an outer layer formed by the ectodermal lining of the branchial groove; later, these two layers become separated by a thin layer of mesoderm; only the first branchial membrane contributes to the formation of an adult structure, i.e. the tympanic membrane (aka eardrum); the second, third, and fourth membranes are obliterated[MP] pharyngeal membrane - + - + EMAPA @@ -508946,7 +509018,7 @@ - + @@ -508974,14 +509046,14 @@ UBERON:0009213 pharyngeal membrane of 1st arch - + - + EMAPA @@ -509021,7 +509093,7 @@ - + @@ -509043,14 +509115,14 @@ UBERON:0009215 pharyngeal membrane of 2nd arch - + - + EMAPA @@ -509082,7 +509154,7 @@ - + @@ -509104,14 +509176,14 @@ UBERON:0009216 pharyngeal membrane of 3rd arch - + - + EMAPA @@ -509143,7 +509215,7 @@ - + @@ -509163,14 +509235,14 @@ UBERON:0009217 pharyngeal membrane of 4th arch - + - + EMAPA @@ -509262,7 +509334,7 @@ - + EHDAA:4780 EMAPA:16802 FMA:313738 @@ -509273,14 +509345,14 @@ UBERON:0009293 embryonic frontal process - + - + EMAPA @@ -509323,7 +509395,7 @@ - + The posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae. FMA:321633 SCTID:95950009 @@ -509332,7 +509404,7 @@ UBERON:0009470 postsphenoidal bone - + @@ -509345,7 +509417,7 @@ - + cjm @@ -509362,7 +509434,7 @@ - + The superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis). FMA:54651 NCIT:C32482 @@ -509375,14 +509447,14 @@ UBERON:0009471 dorsum of tongue - + - + FMA @@ -509422,7 +509494,7 @@ - + The axilla is the area directly under the joint where the forelimb connects to the shoulder. axillary CALOHA:TS-2208 @@ -509451,14 +509523,14 @@ axilla http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + - + FMA @@ -509548,7 +509620,7 @@ - + Either of a pair of fleshy lateral processes borne by most segments of a polychaete worm. Wikipedia:Parapodium paradpod @@ -509558,7 +509630,7 @@ UBERON:0009473 parapodium - + @@ -509571,7 +509643,7 @@ - + Wikipedia @@ -509630,7 +509702,7 @@ - + @@ -509643,14 +509715,14 @@ UBERON:0009476 madreporite - + - + BTO @@ -509709,7 +509781,7 @@ - + Mesenchyme that is part of a developing midgut. previously logically defined as mesenchyme of midgut, but this caused disjointness violations between dense and loose mesenchyme EHDAA2:0001186 @@ -509720,7 +509792,7 @@ associated mesenchyme of midgut - + @@ -509733,7 +509805,7 @@ - + EHDAA2 @@ -509968,7 +510040,7 @@ - + A portion of mesenchymal tissue associated with an individual pharyngeal arch. this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. EMAPA:32755 @@ -509980,7 +510052,7 @@ pharyngeal arch mesenchymal region - + @@ -509993,7 +510065,7 @@ - + cjm @@ -510027,7 +510099,7 @@ - + EHDAA2:0000172 EMAPA:16562 uberon @@ -510035,14 +510107,14 @@ extrahepatic part of biliary bud - + - + EHDAA2 @@ -510052,7 +510124,7 @@ - + EHDAA2:0000173 EMAPA:16563 uberon @@ -510060,14 +510132,14 @@ intrahepatic part of biliary bud - + - + EHDAA2 @@ -510088,8 +510160,8 @@ - - + + An epithelium that is part of a foregut-midgut junction. EHDAA2:0000573 EMAPA:16564 @@ -510098,24 +510170,24 @@ epithelium of foregut-midgut junction - + - + - + EHDAA2 - + EHDAA2 @@ -510161,8 +510233,8 @@ - - + + Anatomical region that surrounds the otic vesicle. EHDAA2:0001343 EMAPA:16670 @@ -510175,24 +510247,24 @@ periotic mesenchyme - + - + - + XAO - + EHDAA2 @@ -510447,8 +510519,8 @@ - - + + Mesenchyme that is part of a developing middle ear. Also 1st arch maxillary mesenchyme in EHDAA2 otic mesenchyme @@ -510460,11 +510532,11 @@ mesenchyme of middle ear - + - + @@ -510477,13 +510549,13 @@ - + EHDAA2 - + EHDAA2 @@ -510589,7 +510661,7 @@ - + Mesenchyme that is part of a handplate. We group two EMAPA classes here but these may need to be separated EHDAA2:0000731 @@ -510602,14 +510674,14 @@ mesenchyme of handplate - + - + EHDAA2 @@ -510946,7 +511018,7 @@ - + A segment of a digit containing the distal phalanx, and overlapping the distal interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium). Newborn and adult mice are able to regrow forelimb (finger) and hindlimb (toe) digit tips after their amputation through the distal interphalangeal joint. Regeneration of the digit tip involves the integrated regrowth of multiple tissues within 2-3 months, reaching an external morphology that is cosmetically and functionally similar to normal digits. Most importantly, regeneration of the mouse distal digit shares morphological similarities with clinical cases documenting regrowth of missing distal portions of fingers in both children and adults digit tip @@ -510956,7 +511028,7 @@ UBERON:0009551 distal segment of digit - + @@ -510976,7 +511048,7 @@ - + cjm @@ -511412,8 +511484,8 @@ - - + + A nail, hoof or claw. MESH:D006724 uberon @@ -511425,24 +511497,24 @@ UBERON:0009564 distal limb integumentary appendage - + - + - + cjm - + Wikipathways:WP2062 @@ -511468,8 +511540,8 @@ - - + + A nail that is part of a manual digit. EMAPA:35349 FMA:54327 @@ -511489,24 +511561,24 @@ nail of manual digit - + - + - + FMA - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -511587,7 +511659,7 @@ - + A submucosa that is part of a intestine. FMA:15696 submucosa of intestine @@ -511595,14 +511667,14 @@ UBERON:0009566 intestinal submucosa - + - + FMA @@ -511634,8 +511706,8 @@ - - + + A nail that is part of a pedal digit. EMAPA:36457 FMA:54328 @@ -511659,24 +511731,24 @@ nail of pedal digit - + - + - + FMA - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -511968,7 +512040,7 @@ - + @@ -511993,14 +512065,14 @@ UBERON:0009572 lumen of central canal of spinal cord - + - + FMA-modified @@ -512098,7 +512170,7 @@ - + A sulcus limitans of neural tube that is part of a future medulla oblongata. EHDAA2:0001100 EMAPA:17561 @@ -512106,14 +512178,14 @@ UBERON:0009576 medulla oblongata sulcus limitans - + - + EHDAA2 @@ -512298,7 +512370,7 @@ - + EFO:0003602 EMAPA:17579 MA:0003192 @@ -512310,14 +512382,14 @@ spinal cord lateral wall - + - + EMAPA @@ -512374,7 +512446,7 @@ - + Mesenchyme that is part of a 1st arch mandibular component. UBERON:0010043 EHDAA2:0000034 @@ -512387,14 +512459,14 @@ UBERON:0009584 1st arch mandibular mesenchyme - + - + EMAPA @@ -512465,7 +512537,7 @@ - + An interdigital region mesenchyme that is part of a interdigital region between manual digits 1 and 2. EHDAA2:0000846 EMAPA:17447 @@ -512475,14 +512547,14 @@ UBERON:0009586 mesenchyme of interdigital region between manual digits 1 and 2 - + - + EMAPA @@ -512521,7 +512593,7 @@ - + An interdigital region mesenchyme that is part of a interdigital region between manual digits 2 and 3. EHDAA2:0000849 EMAPA:17450 @@ -512531,14 +512603,14 @@ UBERON:0009587 mesenchyme of interdigital region between manual digits 2 and 3 - + - + EMAPA @@ -512577,7 +512649,7 @@ - + An interdigital region mesenchyme that is part of a interdigital region between manual digits 3 and 4. EHDAA2:0000852 EMAPA:17453 @@ -512587,14 +512659,14 @@ UBERON:0009588 mesenchyme of interdigital region between manual digits 3 and 4 - + - + EMAPA @@ -512633,7 +512705,7 @@ - + An interdigital region mesenchyme that is part of a interdigital region between manual digits 4 and 5. EHDAA2:0000855 EMAPA:17456 @@ -512643,14 +512715,14 @@ UBERON:0009589 mesenchyme of interdigital region between manual digits 4 and 5 - + - + EMAPA @@ -512689,7 +512761,7 @@ - + An interdigital region mesenchyme that is part of a interdigital region between pedal digits 1 and 2. EHDAA2:0000858 EMAPA:17478 @@ -512699,14 +512771,14 @@ UBERON:0009590 mesenchyme of interdigital region between pedal digits 1 and 2 - + - + EMAPA @@ -512745,7 +512817,7 @@ - + An interdigital region mesenchyme that is part of a interdigital region between pedal digits 2 and 3. EHDAA2:0000861 EMAPA:17481 @@ -512755,14 +512827,14 @@ UBERON:0009591 mesenchyme of interdigital region between pedal digits 2 and 3 - + - + EMAPA @@ -512801,7 +512873,7 @@ - + An interdigital region mesenchyme that is part of a interdigital region between pedal digits 3 and 4. EHDAA2:0000864 EMAPA:17484 @@ -512811,14 +512883,14 @@ UBERON:0009592 mesenchyme of interdigital region between pedal digits 3 and 4 - + - + EMAPA @@ -512857,7 +512929,7 @@ - + An interdigital region mesenchyme that is part of a interdigital region between pedal digits 4 and 5. EHDAA2:0000867 EMAPA:17487 @@ -512867,14 +512939,14 @@ UBERON:0009593 mesenchyme of interdigital region between pedal digits 4 and 5 - + - + EMAPA @@ -513057,7 +513129,7 @@ - + An interdigital region mesenchyme that is part of a manus. EMAPA:32653 mesenchyme of interdigital region of forelimb @@ -513065,14 +513137,14 @@ UBERON:0009600 mesenchyme of interdigital region of manus - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -513099,7 +513171,7 @@ - + An interdigital region mesenchyme that is part of a pes. EMAPA:32955 mesenchyme of interdigital region of hindlimb @@ -513107,14 +513179,14 @@ UBERON:0009601 mesenchyme of interdigital region of pes - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -513205,8 +513277,8 @@ - - + + A neural plate that develops_from a future forebrain. TAO:0007018 ZFA:0007018 @@ -513214,7 +513286,7 @@ UBERON:0009610 forebrain neural plate - + @@ -513223,20 +513295,20 @@ - + - + ZFA - + ZFA @@ -513251,8 +513323,8 @@ - - + + A neural plate that develops_from a presumptive midbrain. TAO:0007019 ZFA:0007019 @@ -513260,7 +513332,7 @@ UBERON:0009611 midbrain neural plate - + @@ -513269,20 +513341,20 @@ - + - + ZFA - + ZFA @@ -513298,8 +513370,8 @@ - - + + TAO:0007020 ZFA:0007020 diencephalic-mesencephalic boundary neural plate @@ -513307,11 +513379,11 @@ UBERON:0009612 forebrain midbrain boundary neural plate - + - + @@ -513324,13 +513396,13 @@ - + ZFA - + ZFA @@ -513345,8 +513417,8 @@ - - + + A neural plate that develops_from a presumptive hindbrain. TAO:0007022 ZFA:0007022 @@ -513354,7 +513426,7 @@ UBERON:0009614 hindbrain neural plate - + @@ -513363,20 +513435,20 @@ - + - + ZFA - + ZFA @@ -513392,8 +513464,8 @@ - - + + TODO - developmental relationships for lines TAO:0007044 ZFA:0007044 @@ -513403,24 +513475,24 @@ UBERON:0009615 midbrain hindbrain boundary neural plate - + - + - + ZFA - + https://github.com/obophenotype/uberon/issues/438 Bgee:AN @@ -513453,14 +513525,14 @@ - + - + A presumptive structure that has the potential to develop into a midbrain. TODO - unify naming conventions BAMS:MES @@ -513479,24 +513551,24 @@ presumptive midbrain - + - + - + ZFA - + ZFA @@ -513542,7 +513614,7 @@ - + Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles. A major contributor to neurocranium [PMID:16313393] EHDAA2:0000736 @@ -513559,14 +513631,14 @@ UBERON:0009617 head paraxial mesoderm - + - + EHDAA2 @@ -513619,7 +513691,7 @@ - + EHDAA2:0002094 trunk and cervical paraxial mesenchyme uberon @@ -513627,14 +513699,14 @@ UBERON:0009618 trunk paraxial mesoderm - + - + EHDAA2 @@ -513656,24 +513728,24 @@ - + - + EHDAA2:0003239 uberon UBERON:0009620 tail bud paraxial mesoderm - + - + @@ -513686,13 +513758,13 @@ - + EHDAA2 - + EHDAA2 @@ -513743,8 +513815,8 @@ - - + + A proximal straight tubule that is part of a pronephros. TAO:0002239 ZFA:0001621 @@ -513753,24 +513825,24 @@ UBERON:0009622 pronephric proximal straight tubule - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -514019,7 +514091,7 @@ - + @@ -514040,14 +514112,14 @@ coccygeal nerve http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png - + - + FMA-abduced-lr @@ -514370,8 +514442,8 @@ - - + + Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum. Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones.[TAO] NCIT:C34243 @@ -514383,11 +514455,11 @@ UBERON:0009635 parachordal cartilage - + - + @@ -514400,13 +514472,13 @@ - + ZFA - + ZFA @@ -514490,11 +514562,11 @@ - - - - - + + + + + The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum. FMA:52867 SCTID:140491003 @@ -514510,54 +514582,54 @@ body of sphenoid http://upload.wikimedia.org/wikipedia/commons/d/d5/Gray146.png - + - + - + - + - + - + FMA - + cjm - + FMA - + ISBN:1588903958 - + ISBN:1588903958 @@ -514623,7 +514695,7 @@ - + The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus. BAMS:al DHBA:10571 @@ -514641,14 +514713,14 @@ ansa lenticularis http://upload.wikimedia.org/wikipedia/commons/9/94/DA-loops_in_PD.jpg - + - + FMA @@ -514693,8 +514765,8 @@ - - + + A pathway containing fibers from midbrain nuclei that project to the inferior olivary complex, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to several nuclei of the thalamus. It can be identified in the midbrain and the pons (Adapted from Brain Info). The central tegmental tract is a structure in the midbrain and pons. The central tegmental tract includes ascending axonal fibers which arise from the rostral nucleus solitarius and terminate in the ventral posteromedial nucleus (VPM) of thalamus. Information from the thalamus will go to cortical taste area, namely the insula and frontal operculum. It also contains descending axonal fibers from the parvocellular red nucleus. The descending axons will project to the inferior olivary nucleus. This latter pathway will be used to connect the contralateral cerebellum[Wikipedia:Central_tegmental_tract]. BAMS:ctg @@ -514710,11 +514782,11 @@ central tegmental tract http://upload.wikimedia.org/wikipedia/commons/f/f7/Midbrainsuperiorcolliculus.png - + - + @@ -514727,13 +514799,13 @@ - + NIFSTD - + NIFSTD @@ -515023,7 +515095,7 @@ - + The portions of renal substance (cortex) intervening between the bases of the pyramids and the capsule of the kidney. EMAPA:37486 FMA:17876 @@ -515038,14 +515110,14 @@ UBERON:0009650 cortical arch of kidney - + - + MA @@ -515107,8 +515179,8 @@ - - + + A basement membrane that is part of a nephron tubule. EMAPA:37490 MA:0001680 @@ -515122,24 +515194,24 @@ UBERON:0009651 nephron tubule basement membrane - + - + - + MA - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -515190,7 +515262,7 @@ - + A basement membrane that is part of a bronchus. MA classifies as type of connective tissue: https://github.com/obophenotype/mouse-anatomy-ontology/issues/108 EMAPA:37809 @@ -515202,14 +515274,14 @@ UBERON:0009652 bronchus basement membrane - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -515260,8 +515332,8 @@ - - + + A basement membrane that is part of a trachea. EMAPA:37552 MA:0001854 @@ -515271,25 +515343,25 @@ UBERON:0009653 trachea basement membrane - + - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + MA-modified @@ -515660,7 +515732,7 @@ - + EHDAA2:0004566 EMAPA:32911 MA:0003203 @@ -515671,14 +515743,14 @@ gut mesentery https://github.com/obophenotype/uberon/issues/509 - + - + EHDAA2 @@ -515700,7 +515772,7 @@ - + Ventral mesentery is the part of the peritoneum closest to the navel. degenerates during development except foregut portion EHDAA2:0004569 @@ -515710,14 +515782,14 @@ UBERON:0009668 ventral mesentery - + - + EHDAA2 @@ -515790,8 +515862,8 @@ - - + + An anatomical space that surrounded_by a rectum. EHDAA2:0004587 EMAPA:18388 @@ -515802,24 +515874,24 @@ UBERON:0009670 rectal lumen - + - + - + cjm - + EHDAA2 @@ -515841,8 +515913,8 @@ - - + + @@ -515856,24 +515928,24 @@ UBERON:0009671 nasal fin - + - + - + EHDAA2 - + EHDAA2 @@ -515889,9 +515961,9 @@ - - - + + + The oronasal membrane separates the oral cavity and nasal cavity. split into two? In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity @@ -515904,15 +515976,15 @@ UBERON:0009672 oronasal membrane - + - + - + @@ -515925,19 +515997,19 @@ - + EHDAA2 - + EHDAA2 - + posterior portion EHDAA2 @@ -515966,7 +516038,7 @@ - + @@ -515985,14 +516057,14 @@ Thus in contemporary discussions of the accessory nerve, the common practice is to dismiss the cranial part altogether, referring to the accessory nerve specifically as the spinal accessory nerve. accessory XI nerve cranial component - + - + MA @@ -516012,7 +516084,7 @@ - + @@ -516033,14 +516105,14 @@ UBERON:0009674 accessory XI nerve spinal component - + - + EHDAA2 @@ -516078,7 +516150,7 @@ - + The chorda tympani is a nerve that branches from the facial nerve (cranial nerve VII) inside the facial canal, just before the facial nerve exits the skull via the stylomastoid foramen. Chorda tympani is a branch of the facial nerve (the seventh cranial nerve) that serves the taste buds in the front of the tongue, runs through the middle ear, and carries taste messages to the brain. The chorda tympani is part of one of three cranial nerves that are involved in taste. The taste system involves a complicated feedback loop, with each nerve acting to inhibit the signals of other nerves. The chorda tympani appears to exert a particularly strong inhibitory influence on other taste nerves, as well as on pain fibers in the tongue. When the chorda tympani is damaged, its inhibitory function is disrupted, leading to less inhibited activity in the other nerves. EHDAA2:0000490 EHDAA:3719 @@ -516101,14 +516173,14 @@ UBERON:0009675 chorda tympani branch of facial nerve - + - + EHDAA2 @@ -516172,8 +516244,8 @@ - - + + EFO:0003562 EHDAA2:0001981 EHDAA:1993 @@ -516186,24 +516258,24 @@ early telencephalic vesicle - + - + - + EHDAA2 - + EHDAA2 @@ -516473,9 +516545,9 @@ - - - + + + The posterior inferior cerebellar artery (PICA), the largest branch of the vertebral, is one of the three main arterial blood supplies for the cerebellum. @@ -516491,15 +516563,15 @@ posterior inferior cerebellar artery - + - + - + @@ -516512,19 +516584,19 @@ - + FMA - + EHDAA2 - + FMA @@ -516558,8 +516630,8 @@ - - + + A basilar artery branch that supplies the anterior portion of the inferior surface of the cerebellum. EHDAA2:0000587 @@ -516574,24 +516646,24 @@ anterior inferior cerebellar artery - + - + - + EHDAA2 - + FMA @@ -516636,8 +516708,8 @@ - - + + An organ cavity that is part of a pharyngotympanic tube. Check relationships for conformance with AAO and XAO EHDAA2:0004118 @@ -516650,11 +516722,11 @@ UBERON:0009692 lumen of pharyngotympanic tube - + - + @@ -516667,13 +516739,13 @@ - + cjm - + EHDAA2/Kardong @@ -516723,9 +516795,9 @@ - - - + + + An epithelium that is part of a hypopharynx. EHDAA2:0004575 FMA:62454 @@ -516735,34 +516807,34 @@ UBERON:0009695 epithelium of laryngopharynx - + - + - + - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -516800,14 +516872,14 @@ - + - + An epithelium that is part of a vermiform appendix. CALOHA:TS-2062 EHDAA2:0004561 @@ -516818,24 +516890,24 @@ UBERON:0009697 epithelium of appendix - + - + - + EHDAA2 - + EHDAA2 @@ -516863,9 +516935,9 @@ - - - + + + EHDAA2:0001371 uberon @@ -516875,15 +516947,15 @@ dorsal pancreas - + - + - + @@ -516896,19 +516968,19 @@ - + EHDAA2 - + EHDAA2 - + cjm @@ -516918,9 +516990,9 @@ - - - + + + EHDAA2:0001393 uberon @@ -516930,15 +517002,15 @@ ventral pancreas - + - + - + @@ -516951,19 +517023,19 @@ - + EHDAA2 - + EHDAA2 - + cjm @@ -516983,8 +517055,8 @@ - - + + Any endocardium that is part of the right ventricle of the heart. Endocardium of ventricle which is continuous tricuspid valve, pulmonary valve and with the tunica intima of the pulmonary trunk. EHDAA2:0002188 @@ -517001,24 +517073,24 @@ UBERON:0009712 endocardium of right ventricle - + - + - + EHDAA2 - + FMA @@ -517074,7 +517146,7 @@ - + Any endocardium that is part of the left ventricle of the heart. Endocardium of ventricle which is continuous with mitral valve, aortic valve, atrioventricular septum and the tunica intima of the aorta. EHDAA2:0002182 @@ -517090,14 +517162,14 @@ UBERON:0009713 endocardium of left ventricle - + - + FMA @@ -517143,8 +517215,8 @@ - - + + The primordial mass of tissue formed by the merging of the medial nasal prominences of the embryo; it contributes to the intermaxillary portion of the upper jaw, the prolabial portion of the upper lip, and the primary palate. requires verification. Note EHDAA2 has this as coming from both lateral and medial prominences. See also: median cleft lip EHDAA2:0000868 @@ -517158,11 +517230,11 @@ UBERON:0009714 intermaxillary process - + - + @@ -517175,14 +517247,14 @@ - + inconsistent EHDAA2 - + EHDAA2 @@ -517427,14 +517499,14 @@ - + - + EHDAA2:0004621 EMAPA:32754 FMA:293087 @@ -517443,24 +517515,24 @@ UBERON:0009722 entire pharyngeal arch endoderm - + - + - + EHDAA2 - + EHDAA2 @@ -518178,7 +518250,7 @@ - + EMAPA:35113 FMA:69086 MA:0001887 @@ -518189,14 +518261,14 @@ UBERON:0009753 adrenal gland cortex zone - + - + MA @@ -518471,7 +518543,7 @@ - + the left duct atrophies at metamorphosis in the lamprey (22)[PMID:20959416, S1] EHDAA2:0000304 FMA:70311 @@ -518481,7 +518553,7 @@ UBERON:0009769 left common cardinal vein - + @@ -518494,7 +518566,7 @@ - + EHDAA2 @@ -518674,7 +518746,7 @@ - + A nuclear complex of the medullary reticular formation that can be divided into three subnuclei: the parvocellular, magnocellular and the subtrigeminal[WP,modified]. BAMS:LMRt FMA:72573 @@ -518689,7 +518761,7 @@ The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis[WP] lateral medullary reticular complex - + @@ -518702,7 +518774,7 @@ - + FMA @@ -518744,7 +518816,7 @@ - + . TAO:0000219 ZFA:0000219 @@ -518753,7 +518825,7 @@ UBERON:0009776 intermediate reticular formation - + @@ -518766,7 +518838,7 @@ - + GOC:pr brainspan.org @@ -518838,8 +518910,8 @@ - - + + A serous sac that has the pleura and the pleural cavity as parts. despite its name the class EHDAA2:0004737 is not a true cavity, it corresponds to what we call the sac EHDAA2:0004737 @@ -518850,24 +518922,24 @@ pleural sac - + - + - + FMA - + FMA-abduced-lr @@ -519045,8 +519117,8 @@ - - + + The frontal part of the cingulate cortex that resembles a collar form around the corpus callosum. It includes both the ventral and dorsal areas of the cingulate cortex. Wikipedia:File:Gray727.svg. BIRNLEX:936 @@ -519059,24 +519131,24 @@ anterior cingulate cortex http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png - + - + - + BTO - + Wikipedia @@ -519162,14 +519234,14 @@ - - - - - - - - + + + + + + + + Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus. DHBA:10666 TAO:0001441 @@ -519181,35 +519253,35 @@ lower rhombic lip - + - + - + - + - + - + - + - + @@ -519222,49 +519294,49 @@ - + ZFA - + ZFA - + ZFA - + ZFA - + ZFA - + ZFA - + ZFA - + ZFA @@ -519286,9 +519358,9 @@ - - - + + + Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary. DHBA:10665 EHDAA2:0000229 @@ -519304,15 +519376,15 @@ upper rhombic lip - + - + - + @@ -519325,19 +519397,19 @@ - + ZFA - + ZFA - + ZFA-def @@ -519487,7 +519559,7 @@ - + @@ -519500,14 +519572,14 @@ UBERON:0009844 urogenital sinus lumen - + - + EHDAA2 @@ -519522,7 +519594,7 @@ - + Mesenchyme that surrounds primitive urogenital sinus. Androgen receptor (AR) activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth EMAPA:31500 @@ -519531,7 +519603,7 @@ UBERON:0009845 urogenital sinus mesenchyme - + @@ -519543,7 +519615,7 @@ - + PMID:18977204 @@ -519577,8 +519649,8 @@ - - + + An epithelium that is part of a embryonic cloaca. cloacal epithelium EHDAA2:0004585 @@ -519586,11 +519658,11 @@ UBERON:0009846 embryonic cloacal epithelium - + - + @@ -519603,13 +519675,13 @@ - + EHDAA2 - + EHDAA2 @@ -519647,32 +519719,32 @@ - - + + A specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop. uberon prostate primordium UBERON:0009847 prostate field - + - + - + PMID:18977204 - + PMID:18977204 @@ -519704,7 +519776,7 @@ - + A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon. Modeling this as a line may not be correct - see http://code.google.com/p/caro2/issues/detail?id=17 The border between the dorsal and ventral thalamus.[TAO] @@ -519721,14 +519793,14 @@ UBERON:0009848 zona limitans intrathalamica - + - + ZFA @@ -519932,7 +520004,7 @@ - + The part of the uterus above the isthmus and below the orifices of the uterine tubes. CALOHA:TS-1265 @@ -519950,14 +520022,14 @@ body of uterus - + - + FMA @@ -520186,8 +520258,8 @@ - - + + @@ -520204,24 +520276,24 @@ UBERON:0009858 outer fibrous layer of periosteum - + - + - + FMA - + Wikipedia @@ -520433,7 +520505,7 @@ - + @@ -520458,14 +520530,14 @@ UBERON:0009865 Hatschek's pit - + - + Wikipedia @@ -520487,21 +520559,21 @@ - + An unpaired kidney whose duct opens into the anterior pharynx. It can be seen as a deep ciliated fossa on the dorsal midline of the buccal cavity (mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]. uberon UBERON:0009866 Hatschek's nephridium - + - + Wikipedia @@ -520523,19 +520595,19 @@ - + uberon UBERON:0009867 Hatschek's diverticulum - + - + Wikipedia @@ -520740,8 +520812,8 @@ - - + + @@ -520763,24 +520835,24 @@ UBERON:0009877 metapodium region - + - + - + MA:th - + PHENOSCAPE:ni @@ -521225,7 +521297,7 @@ - + EFO:0003704 TAO:0005041 @@ -521236,7 +521308,7 @@ anterior lateral plate mesoderm - + @@ -521249,7 +521321,7 @@ - + ZFA @@ -521328,7 +521400,7 @@ - + @@ -521358,7 +521430,7 @@ medullary ray - + @@ -521371,7 +521443,7 @@ - + MP @@ -521624,9 +521696,9 @@ - - - + + + @@ -521646,34 +521718,34 @@ UBERON:0009889 secondary heart field - + - + - + - + GO:0003129 - + PMID:17276708 - + PMID:17276708 @@ -522044,7 +522116,7 @@ - + BAMS:s5 BAMS:sV DHBA:12867 @@ -522059,7 +522131,7 @@ UBERON:0009907 sensory root of trigeminal nerve - + @@ -522072,7 +522144,7 @@ - + Wikipedia @@ -522136,7 +522208,7 @@ - + EFO:0003705 TAO:0005042 ZFA:0005042 @@ -522146,7 +522218,7 @@ posterior lateral plate mesoderm - + @@ -522159,7 +522231,7 @@ - + ZFA @@ -522344,7 +522416,7 @@ - + @@ -522383,14 +522455,14 @@ Alternate definition: One of the subdivisions of the kidney, consisting of a medullary ray and that portion of the convoluted port (renal corpuscles and convoluted tubules) associated with its collecting duct. -http://www.mondofacto.com/facts/dictionary?lobulus+corticalis+renalis renal lobule - + - + FMA @@ -522536,7 +522608,7 @@ - + @@ -522550,14 +522622,14 @@ kidney corticomedullary boundary - + - + MP @@ -522579,7 +522651,7 @@ - + The loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain. DHBA:12531 DMBA:17327 @@ -522589,7 +522661,7 @@ retrotrapezoid nucleus - + @@ -522602,7 +522674,7 @@ - + MP @@ -522676,14 +522748,14 @@ - + EHDAA2:0001315 EHDAA:1122 uberon UBERON:0009920 optic neural crest - + @@ -522696,7 +522768,7 @@ - + EHDAA2 @@ -522784,7 +522856,7 @@ - + The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]. @@ -522798,14 +522870,14 @@ UBERON:0009951 main olfactory bulb - + - + cjm @@ -522851,7 +522923,7 @@ - + A narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs. SGZ EMAPA:35831 @@ -522865,14 +522937,14 @@ dentate gyrus subgranular zone https://upload.wikimedia.org/wikipedia/commons/9/99/Doublecortin_expression-2.png - + - + granule cells Wikipedia @@ -522966,21 +523038,21 @@ - + A vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants. check relationship to olfactory system. Evolution: The morphological components of the VNS are found only in tetrapods, but the genetic components of the system have been found in teleost fish, in addition to tetrapods. In tetrapods, the VNS was thought to be the olfactory system for detecting pheromones, while the main olfactory system detected general odorants (Scalia and Winans 1975). However, experimental evidence suggests that there is not such a clear functional distinction (Restrepo et al. 2004; Baxi, Dorries, and Eisthen 2006; Spehr et al. 2006; Kelliher 2007). Sea lampreys produce unique bile acids which act as pheromones both in migration and mate finding (Li, Sorensen, and Gallaher 1995; Li et al. 2002; Siefkes and Li 2004). However, bile acids in teleost fish are known to require components of the main olfactory signal transduction pathway (Hansen et al. 2003), and interruption of the VNS signal transduction pathway had no effect on bile acid olfactory response (Hansen et al. 2003)[Grus - EVOLUTION OF THE VOMERONASAL SYSTEM VIEWED THROUGH SYSTEM-SPECIFIC GENES] uberon UBERON:0009954 vomeronasal system - + - + Wikipedia @@ -523077,21 +523149,21 @@ - + A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve. organ of de Quatrefage uberon UBERON:0009956 corpuscle of de Quatrefage - + - + PMID:11523831 @@ -523107,21 +523179,21 @@ - + uberon pre-oral pit UBERON:0009957 Development: joins with Hatschek's diverticulum to form Hatschek's pit in the adult. Location: anterior to the mouth. ciliated pit - + - + Wikipedia @@ -523130,9 +523202,9 @@ - - - + + + An anatomical space that is enclosed by a urinary bladder. EHDAA2:0004058 FMA:15924 @@ -523146,7 +523218,7 @@ UBERON:0009958 bladder lumen - + @@ -523155,30 +523227,30 @@ - + - + - + FMA - + FMA - + EHDAA2 @@ -523240,7 +523312,7 @@ - + An anatomical space that is enclosed by a oropharynx. EHDAA2:0004556 FMA:55095 @@ -523250,14 +523322,14 @@ UBERON:0009959 lumen of oropharynx - + - + EHDAA2 @@ -523295,7 +523367,7 @@ - + A circular muscle layer of muscular coat that is part of a esophagus. EMAPA:37523 FMA:67605 @@ -523307,14 +523379,14 @@ UBERON:0009960 esophagus smooth muscle circular layer - + - + MA @@ -523354,8 +523426,8 @@ - - + + EMAPA:37524 FMA:63573 MA:0001575 @@ -523366,24 +523438,24 @@ UBERON:0009961 esophagus smooth muscle longitudinal layer - + - + - + MA - + FMA @@ -523558,7 +523630,7 @@ - + A conducting pathway in the conducting tissue of heart through which electrical activity spreads from the SA node to the AV node. include 3 subtypes? evidence is sparse [http://www.gpnotebook.co.uk/simplepage.cfm?ID=-483065798] There is some functional evidence for the existence of specialized conducting pathways within the atria (termed internodal tracts), although this is controversial @@ -523571,7 +523643,7 @@ UBERON:0009966 internodal tract - + @@ -523584,7 +523656,7 @@ - + FMA @@ -523618,7 +523690,7 @@ - + EMAPA:37751 FMA:62815 @@ -523635,7 +523707,7 @@ spleen venous sinus - + @@ -523648,7 +523720,7 @@ - + MA @@ -523696,8 +523768,8 @@ - - + + consider merging into developed structure EHDAA2:0001527 EHDAA:9876 @@ -523706,11 +523778,11 @@ UBERON:0009968 primitive superior sagittal sinus - + - + @@ -523723,13 +523795,13 @@ - + EHDAA2 - + EHDAA2 @@ -523774,7 +523846,7 @@ - + An epithelium that is part of a pancreatic duct. in EHDAA2, the embryonic pancreatic ducts (dorsal, ventral) are classified as eithelial sacs, which would render them subclasses of this EFO:0002556 @@ -523786,14 +523858,14 @@ epithelium of pancreatic duct - + - + FMA-inferred @@ -523925,7 +523997,7 @@ - + @@ -523945,14 +524017,14 @@ ureteropelvic junction - + - + MP @@ -523995,7 +524067,7 @@ - + @@ -524016,14 +524088,14 @@ ureterovesical junction - + - + MP @@ -524068,7 +524140,7 @@ - + An anatomical cavity that surrounded_by a Rathke's pouch. EHDAA2:0004138 EMAPA:25037 @@ -524077,7 +524149,7 @@ UBERON:0009974 lumen of Rathke's pouch - + @@ -524090,7 +524162,7 @@ - + EHDAA2-modified @@ -524484,7 +524556,7 @@ - + The medial condyle is one of the two projections on the lower extremity of femur. The medial condyle is larger than the lateral (outer) condyle due to more weight bearing caused by the center of gravity being medial to the knee. On the posterior surface of the condyle the linea aspera (a ridge running down the posterior shaft of the femur) turns into the medial supracondylar ridge. The outermost protrusion on the medial surface of the medial condyle is referred to as the 'medial epicondyle' and can be palpated by running fingers medially from the patella with the knee in flexion. @@ -524501,14 +524573,14 @@ medial condyle of femur http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png - + - + FMA @@ -524557,7 +524629,7 @@ - + The lateral condyle is one of the two projections on the lower extremity of femur. It is the more prominent and is the broader both in its antero-posterior and transverse diameters. FMA:32859 @@ -524573,14 +524645,14 @@ lateral condyle of femur http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png - + - + FMA @@ -524623,8 +524695,8 @@ - - + + The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle. @@ -524642,11 +524714,11 @@ lateral epicondyle of femur http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png - + - + @@ -524659,13 +524731,13 @@ - + FMA - + FMA @@ -524714,8 +524786,8 @@ - - + + The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or 'tendinous insertion', of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius. FMA:32864 @@ -524731,11 +524803,11 @@ medial epicondyle of femur http://upload.wikimedia.org/wikipedia/commons/e/e0/Gray345.png - + - + @@ -524748,13 +524820,13 @@ - + FMA - + FMA @@ -525321,7 +525393,7 @@ - + @@ -525336,14 +525408,14 @@ placental labyrinth villous - + - + MP @@ -525365,7 +525437,7 @@ - + @@ -525378,14 +525450,14 @@ placenta intervillous maternal lacunae - + - + MP @@ -525401,7 +525473,7 @@ - + @@ -525414,14 +525486,14 @@ placenta fetal blood space - + - + MP @@ -525527,7 +525599,7 @@ - + A group of neurons in the basal forebrain that has wide projections to the neocortex and is rich in acetylcholine and choline acetyltransferase. It undergoes degeneration in paralysis agitans and Alzheimer's disease. rich in acetylcholine and choline acetyltransferase MA has basal nucleus as synonym for BG. @@ -525570,7 +525642,7 @@ basal nucleus of telencephalon http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG - + @@ -525583,7 +525655,7 @@ - + WP @@ -525741,14 +525813,14 @@ - + - + Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum. it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the collection of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done. @@ -525786,11 +525858,11 @@ collection of basal ganglia - + - + @@ -525803,13 +525875,13 @@ - + FMA - + MA NIF @@ -525972,14 +526044,14 @@ - + - + An elongate paired tissue ventral to the kidneys and partialy enveloping the anterior gonads in Elasmobranchii. Apparently important to the immune system. subgonal organ @@ -525987,24 +526059,24 @@ UBERON:0010014 epigonal organ - + - + - + Wikipedia - + Honma1983 @@ -526170,8 +526242,8 @@ - - + + The spiral valve alternately blocks & unblocks the entrances to the left and right pulmonary arches (sending unoxygenated blood to the skin & lungs). The spiral valve is considered to have evolved from the right member of the four embryonic endocardial ridges (Goodrich, 1930 - via Morris 1974) @@ -526182,11 +526254,11 @@ UBERON:0010018 spiral valve of conus arteriosus - + - + @@ -526199,13 +526271,13 @@ - + AAO - + NAS @@ -526292,8 +526364,8 @@ - - + + The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity. The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[well established][VHOG] EHDAA2:0004115 @@ -526309,11 +526381,11 @@ UBERON:0010020 tubotympanic recess epithelium - + - + @@ -526326,13 +526398,13 @@ - + MA - + EHDAA2 ISBN:0073040584 PMID:11237469 @@ -526489,7 +526561,7 @@ - + Derivatives of the dorsal wings include the inferior parathyroid glands[WP] in mammals, the cranial dorsal aspect of the third pouch generates the inferior parathyroids (or parathyroid III) EHDAA2:0000409 EMAPA:16758 @@ -526504,7 +526576,7 @@ UBERON:0010025 dorsal part of pharyngeal pouch 3 - + @@ -526517,7 +526589,7 @@ - + EHDAA2 @@ -526545,7 +526617,7 @@ - + The ventral wings fuse to form the cytoreticular cells of the thymus[WP] the caudal ventral part of the pouch gives rise to the thymus epithelium EHDAA2:0002173 EMAPA:16759 @@ -526560,7 +526632,7 @@ UBERON:0010026 ventral part of pharyngeal pouch 3 - + @@ -526573,7 +526645,7 @@ - + EHDAA2 @@ -526718,7 +526790,7 @@ - + The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch. The lateral lingual swellings grow and fuse with eachother, encompassing the tuberculum impar to provide the ectodermally derived mucosa of the anterior 2/3 of the tongue @@ -526742,7 +526814,7 @@ anterior part of tongue https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg - + @@ -526758,7 +526830,7 @@ - + ISBN:1607950324 @@ -526853,8 +526925,8 @@ - - + + The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.). EMAPA:37438 FMA:54645 @@ -526882,24 +526954,24 @@ posterior part of tongue https://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg - + - + - + FMA - + Wikipedia @@ -527014,7 +527086,7 @@ - + @@ -527033,7 +527105,7 @@ copula linguae http://upload.wikimedia.org/wikipedia/commons/8/85/Gray980.png - + @@ -527046,7 +527118,7 @@ - + EHDAA2 @@ -527075,8 +527147,8 @@ - - + + A group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 ). BAMS:AT BAMS:ATg @@ -527089,11 +527161,11 @@ UBERON:0010036 anterior tegmental nucleus - + - + @@ -527106,14 +527178,14 @@ - + ABA MA - + NN @@ -527151,9 +527223,9 @@ - - - + + + The fundus glands (or fundic glands, or gastric glands) are found in the body and fundus of the stomach. They are simple tubes, two or more of which open into a single duct. Consider FMA:14923 ! Principal gland of fundus of stomach. Added part_of to mucosa to be consistent with FMA pattern (note that Kardong places this in the glandular epithelium) EMAPA:27161 @@ -527172,34 +527244,34 @@ fundic gastric gland http://upload.wikimedia.org/wikipedia/commons/d/d7/Fundic_gland_polyp_%281%29.jpg - + - + - + - + ISBN:0073040584 - + ISBN:0073040584 - + ISBN:0073040584 @@ -527407,8 +527479,8 @@ - - + + The sum total of mesenchymal tissue in the pharyngeal arch region. Pharyngeal mesenchyme is undifferentiated, loose connective tissue derived mostly from mesoderm, and also contains ectodermally derived neural crest cells. EHDAA2:0001459 EMAPA:16550 @@ -527420,11 +527492,11 @@ UBERON:0010046 entire pharyngeal arch associated mesenchyme - + - + @@ -527437,13 +527509,13 @@ - + EHDAA2 - + cjm @@ -527526,7 +527598,7 @@ - + A gland situated on the upper lip posterior to the eye, found in non-venomous snakes. Releases secretion via duct adjacent to posterior maxillary teeth. Wikipedia:Duvernoy's_gland uberon @@ -527534,14 +527606,14 @@ positioned posterior to the eye, encased in a thin cover of connective tissue, and consists mostly of serous cells. A single, short duct extends anteromedially from the lumen of the gland to the base of the posterior fangs.[WP] Duvernoy's gland - + - + Wikipedia @@ -527829,7 +527901,7 @@ - + EHDAA2:0000799 EMAPA:17352 SCTID:361420009 @@ -527838,7 +527910,7 @@ UBERON:0010057 hypopharyngeal eminence - + @@ -527851,7 +527923,7 @@ - + EHDAA2 @@ -527868,13 +527940,13 @@ - + EHDAA2:0004610 uberon UBERON:0010059 hypoglossal cord - + @@ -527887,7 +527959,7 @@ - + EHDAA2 @@ -528058,8 +528130,8 @@ - - + + EHDAA2:0004117 EMAPA:32801 FMA:285217 @@ -528070,11 +528142,11 @@ UBERON:0010062 pharyngotympanic tube epithelium - + - + @@ -528087,13 +528159,13 @@ - + cjm - + EHDAA2 @@ -528115,24 +528187,24 @@ - + - + EHDAA2:0004116 uberon UBERON:0010063 tympanic cavity epithelium - + - + @@ -528145,13 +528217,13 @@ - + EHDAA2 - + EHDAA2 @@ -528171,7 +528243,7 @@ - + An anatomical space with at least one opening to another space or the exterior. AEO:0000221 EHDAA2:0004616 @@ -528179,14 +528251,14 @@ UBERON:0010064 open anatomical space - + - + cjm @@ -528202,18 +528274,18 @@ - - + + EHDAA2:0004114 uberon UBERON:0010065 auditory meatus epithelium - + - + @@ -528226,13 +528298,13 @@ - + EHDAA2 - + EHDAA2 PMID:16313389 @@ -528500,8 +528572,8 @@ - - + + @@ -528518,24 +528590,24 @@ UBERON:0010074 chromaffin system - + - + - + cjm - + CL ISBN:0073040584 @@ -528669,8 +528741,8 @@ - - + + Consider merging with capillary layer. Consider choriocapillaris complex A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruchs's membrane.[XAO:0004176]. Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]. @@ -528689,11 +528761,11 @@ UBERON:0010078 optic choroid vascular plexus - + - + @@ -528712,13 +528784,13 @@ - + ZFA - + XAO @@ -528839,9 +528911,9 @@ - - - + + + Mesenchyme that has the potential to develop into a dermis. check development EHDAA2:0000598 @@ -528849,34 +528921,34 @@ UBERON:0010083 future dermis - + - + - + - + EHDAA2 - + EHDAA2 - + XAO @@ -528902,43 +528974,43 @@ - - - + + + A structure that will develop into a diaphragm. EHDAA2:0000599 uberon UBERON:0010084 future diaphragm - + - + - + - + EHDAA2 - + PMID:23586979 - + PMID:23586979 @@ -529283,7 +529355,7 @@ - + A ganglion that has the potential to develop into a pterygopalatine ganglion. EHDAA2:0000673 future Meckel ganglion @@ -529297,14 +529369,14 @@ UBERON:0010128 future pterygopalatine ganglion - + - + EHDAA2 @@ -529381,7 +529453,7 @@ - + @@ -529402,14 +529474,14 @@ UBERON:0010129 femur cartilage element - + - + EMAPA @@ -529503,8 +529575,8 @@ - - + + A small blood vessel in the abdomen that supplies blood directly to the pylorus (distal part of the stomach) and proximal part of the duodenum, and indirectly to the pancreatic head (via the anterior and posterior superior pancreaticoduodenal arteries). EHDAA2:0000310 @@ -529520,24 +529592,24 @@ gastroduodenal artery http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png - + - + - + EHDAA2 - + FMA @@ -529769,8 +529841,8 @@ - - + + A sex cord that is part of a indifferent gonad. note that this represents the indifferent structure. EHDAA2:0004051 @@ -529780,7 +529852,7 @@ UBERON:0010141 primitive sex cord of indifferent gonad - + @@ -529789,20 +529861,20 @@ - + - + EHDAA2 - + EHDAA2 @@ -529919,8 +529991,8 @@ - - + + The numerous mucous-secreting glands found in several female mammalian species (including rodents and humans) on the anterior wall of the vagina, around the lower end of the urethra, and possessing a common paraurethral duct which opens (on each side) near the external urethral orifice; they are homologous with the prostate gland in males, have highly variable anatomy, and are believed to be the source of the female ejaculate, a lubricating fluid with a similar consistency to male prostatic fluid that is expelled through the urethra during sexual stimulation; like the male prostate, these glands are susceptible to infection (skenitis), cyst development, and cancer. in MP female urethral gland, Skene gland and paraurethral gland are exact syns. Note that NCITA seems to use the term in a more generic way, as a parent for skene gland, cowper gland (which may be the same as the male bulbo-urethral gland) female urethral gland @@ -529950,24 +530022,24 @@ paraurethral gland https://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg - + - + - + FMA - + PMID:10668204 @@ -530098,7 +530170,7 @@ - + The Skene's ducts are a pair of ducts leading from the Skene's glands to the surface of the vulva, to the left and right of the urethral opening. FMA has two classes that may be equivalent here UBERON:0035064 @@ -530118,14 +530190,14 @@ paraurethral duct https://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg - + - + PMID:10668204 @@ -530473,7 +530545,7 @@ - + The inner mucosa of the fourth stomach chamber of a ruminant produces rennet. BTO:0001168 Wikipedia:Rennet @@ -530484,14 +530556,14 @@ UBERON:0010154 inner lining mucosa of the abomasum - + - + BTO @@ -530898,7 +530970,7 @@ - + The distal end of the tail. EMAPA:37760 MA:0002848 @@ -530910,14 +530982,14 @@ post-anal tail tip - + - + MA @@ -531380,7 +531452,7 @@ - + @@ -531404,14 +531476,14 @@ bulb of aorta - + - + FMA @@ -531476,7 +531548,7 @@ - + @@ -531491,14 +531563,14 @@ sinotubular junction - + - + MP @@ -532038,7 +532110,7 @@ - + @@ -532055,7 +532127,7 @@ pair of dorsal aortae - + @@ -532068,7 +532140,7 @@ - + EHDAA2 @@ -532091,7 +532163,7 @@ - + @@ -532103,14 +532175,14 @@ UBERON:0010191 aortic system - + - + Wikipedia @@ -532130,7 +532202,7 @@ - + One of the laterally paired arteries that supply the gonads. Wikipedia:Gonadal_artery gonadal artery @@ -532138,14 +532210,14 @@ UBERON:0010192 genital artery - + - + Wikipedia @@ -532162,7 +532234,7 @@ - + A portal vein that empties into capillaries within the kidneys. function not well understood. TAO:0000577 @@ -532172,7 +532244,7 @@ UBERON:0010193 renal portal vein - + @@ -532185,7 +532257,7 @@ - + ZFA @@ -532315,7 +532387,7 @@ - + The initial part of the entire common carotid artery ending with the point where the artery bifurcates into an external carotid artery and an internal carotid artery. EHDAA2:0000306 EMAPA:17855 @@ -532326,14 +532398,14 @@ UBERON:0010197 trunk of common carotid artery - + - + FMA @@ -532443,7 +532515,7 @@ - + @@ -532461,7 +532533,7 @@ UBERON:0010202 lateral line - + @@ -532474,7 +532546,7 @@ - + ZFA @@ -532703,8 +532775,8 @@ - - + + The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted. It is the vestigial remnant of the nictitating membrane FMA:59045 @@ -532719,11 +532791,11 @@ plica semilunaris of conjunctiva http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png - + - + @@ -532736,13 +532808,13 @@ - + FMA - + Wikipedia @@ -532817,7 +532889,7 @@ - + A semisolid gelatinous mass of coagulated blood that consists of red blood cells, white blood cells, and platelets entrapped in a fibrin network. BTO:0000102 Wikipedia:Thrombus @@ -532831,14 +532903,14 @@ UBERON:0010210 blood clot - + - + BTO @@ -532923,7 +532995,7 @@ - + @@ -532945,14 +533017,14 @@ UBERON:0010212 laryngeal apparatus - + - + EHDAA2 @@ -532980,30 +533052,30 @@ - - + + uberon UBERON:0010213 laryngeal pre-cartilage condensation - + - + - + EHDAA2-abstracted - + EHDAA2-abstracted @@ -533025,8 +533097,8 @@ - - + + Paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed. EHDAA2 and EMAPA appear to be inconsistent EHDAA2:0000146 @@ -533034,11 +533106,11 @@ UBERON:0010215 arytenoid swellings - + - + @@ -533051,13 +533123,13 @@ - + EHDAA2 - + EHDAA2 @@ -533091,7 +533163,7 @@ - + EHDAA2:0000144 EMAPA:17387 VHOG:0000998 @@ -533100,14 +533172,14 @@ UBERON:0010220 arytenoid pre-cartilage condensation - + - + EHDAA2 @@ -533123,35 +533195,35 @@ - + - - - + + + EHDAA2:0004085 uberon UBERON:0010221 Many sources say: thyroid cartilage from arch 4 other laryngeal cartilage (cricoid/arytenoid) from 6? laryngeal associated mesenchyme - + - + - + - + @@ -533164,25 +533236,25 @@ - + EHDAA2 - + Wikipedia - + Wikipedia - + Wikipedia @@ -533300,7 +533372,7 @@ - + A nuclear complex which in mammals consists of four parts, the hypothalamus, epithalamus, ventral thalamus, and dorsal thalamus[WP,modified]. EHDAA2:0004469 FMA:258745 @@ -533308,14 +533380,14 @@ UBERON:0010225 thalamic complex - + - + EHDAA2 @@ -533341,7 +533413,7 @@ - + @@ -533359,14 +533431,14 @@ UBERON:0010227 future cardiac atrium - + - + ZFA @@ -533501,7 +533573,7 @@ - + @@ -533526,14 +533598,14 @@ eyeball of camera-type eye - + - + FMA @@ -533602,7 +533674,7 @@ - + @@ -533614,14 +533686,14 @@ UBERON:0010232 placodal ectoderm - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -533641,7 +533713,7 @@ - + The connective tissue that supports the lobules and follicles of the thyroid gland. FMA:86304 SCTID:157862000 @@ -533651,14 +533723,14 @@ UBERON:0010233 stroma of thyroid gland - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -533681,11 +533753,11 @@ - - - - - + + + + + The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch. Palatopharyngeus is a muscle that attaches to the palatine bones, soft palate, and pharynx and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] @@ -533704,23 +533776,23 @@ palatopharyngeus muscle http://upload.wikimedia.org/wikipedia/commons/1/1b/Musculuspalatopharyngeus.png - + - + - + - + - + @@ -533739,34 +533811,34 @@ - + FMA-abduced-lr - + vagus nerve and cranial accessory nerve dbpedia - + vagus nerve and cranial accessory nerve dbpedia - + palatine aponeurosis and hard palate dbpedia - + Upper border of thyroid cartilage dbpedia @@ -533827,8 +533899,8 @@ - - + + @@ -533851,11 +533923,11 @@ uvular muscle http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray169.png - + - + @@ -533868,13 +533940,13 @@ - + dbpedia - + dbpedia @@ -533979,7 +534051,7 @@ - + A variant of the ascending colon in ruminants and pigs. Consider merging with ascending colon @@ -533992,14 +534064,14 @@ UBERON:0010239 spiral colon - + - + Wikipedia @@ -534541,7 +534613,7 @@ - + The middle meningeal artery is typically the third branch of the first part (retromandibular part) of the maxillary artery; one of the two terminal branches of the external carotid artery. After branching off the maxillary artery in the infratemporal fossa, it runs through the foramen spinosum to supply the dura mater and the calvaria. The middle meningeal artery is the largest of the three (paired) arteries which supply the meninges, the others being the anterior meningeal artery and the posterior meningeal artery. In approximately half of subjects it branches into an accessory meningeal artery. The middle meningeal artery runs beneath the pterion. It is vulnerable to injury at this point, where the skull is thin. Rupture of the artery may give rise to an epidural hematoma. FMA:49711 @@ -534554,14 +534626,14 @@ middle meningeal artery http://upload.wikimedia.org/wikipedia/commons/1/1e/Middle_meningeal_artery.png - + - + FMA @@ -534584,7 +534656,7 @@ - + A meningeal branch to the dura mater arising from the anterior ethmoidal artery. this needs checking as part of a general revision of the blood vessels and their branches - unclear if the anterior meningeal artery should be treated separately from the anterior ethmoidal artery (ie as a branch) or the same thing @@ -534607,14 +534679,14 @@ anterior meningeal artery http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png - + - + Wikipedia @@ -534703,8 +534775,8 @@ - - + + @@ -534717,11 +534789,11 @@ UBERON:0010252 1st arch mandibular mesenchyme from neural crest - + - + @@ -534734,13 +534806,13 @@ - + EHDAA2 - + EHDAA2 @@ -534771,19 +534843,19 @@ - - + + Mesenchyme that develops_from a neural crest and is part of a 1st arch maxillary mesenchyme. EHDAA2:0000044 uberon UBERON:0010253 1st arch maxillary mesenchyme from neural crest - + - + @@ -534796,13 +534868,13 @@ - + EHDAA2 - + EHDAA2 @@ -534833,8 +534905,8 @@ - - + + @@ -534851,11 +534923,11 @@ UBERON:0010254 2nd arch mesenchyme from neural crest - + - + @@ -534868,13 +534940,13 @@ - + EHDAA2 - + EHDAA2 @@ -534905,8 +534977,8 @@ - - + + Mesenchyme that develops_from a neural crest and is part of a 3rd arch mesenchyme. In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] EHDAA2:0000083 @@ -534921,11 +534993,11 @@ UBERON:0010255 3rd arch mesenchyme from neural crest - + - + @@ -534938,13 +535010,13 @@ - + EHDAA2 - + EHDAA2-inferred @@ -534997,9 +535069,9 @@ - - - + + + Mesenchyme that develops_from a neural crest and is part of a 4th arch mesenchyme. In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] EHDAA2:0000098 @@ -535014,15 +535086,15 @@ UBERON:0010256 4th arch mesenchyme from neural crest - + - + - + @@ -535035,19 +535107,19 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2-inferred @@ -535100,9 +535172,9 @@ - - - + + + Mesenchyme that develops_from a neural crest and is part of a 6th arch mesenchyme. EHDAA2:0004077 neural crest derived arch 6 mesenchyme @@ -535112,15 +535184,15 @@ UBERON:0010257 6th arch mesenchyme from neural crest - + - + - + @@ -535133,19 +535205,19 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2-inferred @@ -535171,21 +535243,21 @@ - + Mesenchyme that develops_from a rhombencephalon neural crest. EHDAA2:0004423 uberon UBERON:0010258 mesenchyme from rhombencephalic neural crest - + - + EHDAA2 @@ -535216,7 +535288,7 @@ - + Mesenchyme that develops_from a neural crest and is part of a 1st arch mesenchyme. EMAPA:16129 mesenchyme derived from neural crest of mesenchyme of 1st arch @@ -535227,14 +535299,14 @@ UBERON:0010259 1st arch mesenchyme from neural crest - + - + EHDAA2-inferred @@ -535367,7 +535439,7 @@ - + @@ -535384,7 +535456,7 @@ UBERON:0010264 hepatopancreas - + @@ -535397,7 +535469,7 @@ - + BTO @@ -535438,8 +535510,8 @@ - - + + @@ -535454,24 +535526,24 @@ UBERON:0010266 arthropod hepatopancreas - + - + - + PMID:18025161 - + PMID:18025161 @@ -535529,7 +535601,7 @@ - + FMA:256524 SCTID:315673007 internal part of filum terminale @@ -535537,14 +535609,14 @@ UBERON:0010269 filum terminale internum - + - + FMA @@ -535560,7 +535632,7 @@ - + FMA:256526 SCTID:315573001 external part of filum terminale @@ -535568,14 +535640,14 @@ UBERON:0010270 filum terminale externum - + - + FMA @@ -535641,7 +535713,7 @@ - + A group of bones comprised of hyoid body and two pairs of cornua (i.e. greater cornua and lesser cornua), and lies just below the tongue, above the thyroid cartilage. Apparatus located in the floor of the mouth, under the mandibular arcade. The apparatus consists of a central corpus and four pairs of processes. This apparatus serves as the site of insertion for a variety of muscles associated with movements of the tongue and as the origin of the m. hyoglossus.[AAO] relationship loss: part_of hyolaryngeal complex (AAO:0000226)[AAO] @@ -535660,14 +535732,14 @@ UBERON:0010272 hyoid apparatus - + - + AAO @@ -535804,14 +535876,14 @@ - + - + @@ -535829,24 +535901,24 @@ mesocardium - + - + - + MA - + EHDAA2 @@ -535868,8 +535940,8 @@ - - + + There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery. SCTID:314273005 Wikipedia:Pericardial_sinus @@ -535884,24 +535956,24 @@ pericardial sinus http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png - + - + - + FMA-abduced - + MA-abduced @@ -536039,8 +536111,8 @@ - - + + Portion of tissue that is dorsolateral to the floor plate and part of the midbrain. DHBA:12322 EFO:0003567 @@ -536054,11 +536126,11 @@ midbrain basal plate - + - + @@ -536071,13 +536143,13 @@ - + EHDAA2 - + ZFA @@ -536105,7 +536177,7 @@ - + Portion of neural tube that gives rise to the midbrain. we follow ZFA in temporally dividing midbrain NT from presumptive midbrain, but in future this may be collapsed TAO:0007039 @@ -536114,7 +536186,7 @@ UBERON:0010286 midbrain neural tube - + @@ -536127,7 +536199,7 @@ - + ZFA @@ -536143,7 +536215,7 @@ - + DHBA:12863 FMA:53419 SCTID:280191009 @@ -536154,7 +536226,7 @@ UBERON:0010287 motor root of facial nerve - + @@ -536167,7 +536239,7 @@ - + Wikipedia @@ -536202,8 +536274,8 @@ - - + + Circular cartilage ringing the posterior portion of the eye in the sclera. Supports the eye. consider distinguishing cup from predecessor of ossicle. Hall: The scleral cartilaginous cup is a distinctly sepa- rate element composed of hyaline cartilage relationship to sclera - overlaps? @@ -536220,11 +536292,11 @@ UBERON:0010289 scleral cartilage - + - + @@ -536237,13 +536309,13 @@ - + cjm - + PMID:17051547 - ossicles @@ -536300,7 +536372,7 @@ - + @@ -536320,14 +536392,14 @@ UBERON:0010290 scleral ossicle - + - + ZFA @@ -536367,21 +536439,21 @@ - + . Wikipedia:Sclera#Histology uberon UBERON:0010291 layer of sclera - + - + cjm @@ -536460,7 +536532,7 @@ - + On the external surface of the optic choroid is a thin membrane, the suprachoroid lamina, composed of delicate non-vascular lamellae-each lamella consisting of a network of fine elastic fibers among which are branched pigment cells. The spaces between the lamellae are lined by endothelium, and open freely into the perichoroidal lymph space, which, in its turn, communicates with the periscleral space by the perforations in the sclera through which the vessels and nerves are transmitted. FMA treats this as part of the sclera @@ -536479,14 +536551,14 @@ UBERON:0010293 suprachoroid lamina - + - + Wikipedia @@ -536678,21 +536750,21 @@ - + An eye adnexal structure, but not necessarily part of the eyeball uberon UBERON:0010296 scleral skeletal element - + - + PMID:17051547 @@ -536709,8 +536781,8 @@ - - + + A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball.[TAO] The scleral ossicles [of teleosts] are reported to form indirectly by endochondral (Hall and Miyake, 1992) or by perichondral ossification (Patterson, 1977) from a cartilage element that is also present in the sclera. This is unlike the scleral ossicles of reptiles, which develop directly from ectomesenchyme (i.e., intramembranous ossification) and independently from the scleral cartilage @@ -536721,11 +536793,11 @@ UBERON:0010297 endochondral scleral ossicle - + - + @@ -536738,13 +536810,13 @@ - + ZFA - + ZFA @@ -536783,7 +536855,7 @@ - + The scleral ossicles [in reptiles] uberon @@ -536791,7 +536863,7 @@ are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991) intramembranous scleral ossicle - + @@ -536804,7 +536876,7 @@ - + PMID:16496288 @@ -536870,7 +536942,7 @@ - + A single extraembryonic epithelium, which closes the germband dorsally. May be obsoleted once added to insect ontology. Coordinate with cell type in CL BTO:0004800 @@ -536882,7 +536954,7 @@ amnioserosa - + @@ -536895,7 +536967,7 @@ - + Cyclorrhapha DOI:10.1073/pnas.0709145105 @@ -537335,7 +537407,7 @@ - + Developing anatomical structure that develops into the eyeball and associated structures. Multi-tissue structure that consists of the structures that develop into the retina and lens.[TAO] TAO:0002201 @@ -537345,14 +537417,14 @@ UBERON:0010312 immature eye - + - + definitional @@ -537492,7 +537564,7 @@ - + A skeletal element that is part of a orbital region. uberon eye skeleton @@ -537501,14 +537573,14 @@ UBERON:0010321 skeletal element of eye region - + - + PMID:16496288 @@ -537652,21 +537724,21 @@ - + Permanent cartilage structure projecting from the site of origin of the recti muscles. Supports eyeball and aids rotation. uberon eye stalk UBERON:0010326 optic pedicel - + - + PMID:16496288 @@ -537732,20 +537804,20 @@ - + Mesenchyme that is part of a limb/fin bud. uberon UBERON:0010329 paired limb/fin bud mesenchyme - + - + EHDAA2-abduced @@ -537801,7 +537873,7 @@ - + An epithelium that is part of a handplate. EHDAA2:0000730 EMAPA:32630 @@ -537810,7 +537882,7 @@ UBERON:0010332 epithelium of handplate - + @@ -537823,7 +537895,7 @@ - + EHDAA2 @@ -537855,20 +537927,20 @@ - + Mesenchyme that is part of a extraembryonic membrane. uberon UBERON:0010333 extraembryonic membrane mesenchyme - + - + EHDAA2-abduced @@ -537899,19 +537971,19 @@ - - + + Mesenchyme that develops_from a neural crest and is part of a maxillary process mesenchyme. EHDAA2:0004601 uberon UBERON:0010334 maxillary process mesenchyme from neural crest - + - + @@ -537924,13 +537996,13 @@ - + EHDAA2 - + EHDAA2 @@ -537961,19 +538033,19 @@ - - + + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a maxillary process mesenchyme. EHDAA2:0004602 uberon UBERON:0010335 maxillary process mesenchyme from head mesenchyme - + - + @@ -537986,13 +538058,13 @@ - + EHDAA2 - + EHDAA2 @@ -538023,19 +538095,19 @@ - - + + Mesenchyme that develops_from a neural crest and is part of a mandibular process mesenchyme. EHDAA2:0004603 uberon UBERON:0010336 mandibular process mesenchyme from neural crest - + - + @@ -538048,13 +538120,13 @@ - + EHDAA2 - + EHDAA2 @@ -538085,19 +538157,19 @@ - - + + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a mandibular process mesenchyme. EHDAA2:0004604 uberon UBERON:0010337 mandibular process mesenchyme from head mesenchyme - + - + @@ -538110,13 +538182,13 @@ - + EHDAA2 - + EHDAA2 @@ -538147,19 +538219,19 @@ - - + + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch maxillary mesenchyme. EHDAA2:0000043 uberon UBERON:0010338 1st arch maxillary mesenchyme from head mesenchyme - + - + @@ -538172,13 +538244,13 @@ - + EHDAA2 - + EHDAA2 @@ -538209,19 +538281,19 @@ - - + + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mandibular mesenchyme. EHDAA2:0000036 uberon UBERON:0010339 1st arch mandibular mesenchyme from head mesenchyme - + - + @@ -538234,13 +538306,13 @@ - + EHDAA2 - + EHDAA2 @@ -538271,7 +538343,7 @@ - + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mesenchyme. EMAPA:16130 mesenchyme derived from head mesoderm of mesenchyme of 1st arch @@ -538279,7 +538351,7 @@ UBERON:0010341 1st arch mesenchyme from head mesenchyme - + @@ -538292,7 +538364,7 @@ - + EMAPA @@ -538329,8 +538401,8 @@ - - + + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 2nd arch mesenchyme. EHDAA2:0000067 EMAPA:16280 @@ -538342,11 +538414,11 @@ UBERON:0010343 2nd arch mesenchyme from head mesenchyme - + - + @@ -538359,13 +538431,13 @@ - + EHDAA2 - + EHDAA2 @@ -538402,8 +538474,8 @@ - - + + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 3rd arch mesenchyme. EHDAA2:0000082 EMAPA:16403 @@ -538415,11 +538487,11 @@ UBERON:0010344 3rd arch mesenchyme from head mesenchyme - + - + @@ -538432,13 +538504,13 @@ - + EHDAA2 - + EHDAA2 @@ -538475,8 +538547,8 @@ - - + + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 4th arch mesenchyme. EHDAA2:0000097 EMAPA:16771 @@ -538488,11 +538560,11 @@ UBERON:0010345 4th arch mesenchyme from head mesenchyme - + - + @@ -538505,13 +538577,13 @@ - + EHDAA2 - + EHDAA2 @@ -538548,8 +538620,8 @@ - - + + Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 6th arch mesenchyme. EHDAA2:0004078 head mesenchyme derived arch 6 mesenchyme @@ -538559,11 +538631,11 @@ UBERON:0010347 6th arch mesenchyme from head mesenchyme - + - + @@ -538576,13 +538648,13 @@ - + EHDAA2 - + EHDAA2 @@ -538598,14 +538670,14 @@ - + EHDAA2:0000795 uberon hyoid muscle plate UBERON:0010348 hyoid pre-muscle mass - + @@ -538618,7 +538690,7 @@ - + EHDAA2 @@ -538674,7 +538746,7 @@ - + EMAPA:17351 future Reichert's cartilage hyoid cartilage pre-cartilage condensation @@ -538682,14 +538754,14 @@ UBERON:0010354 Reichert's cartilage pre-cartilage condensation - + - + DOI:10.1111/j.1469-7580.2005.00441.x EHDAA2 @@ -538869,7 +538941,7 @@ - + An arch-shaped structure of the vertebra that extends dorsally (neural arch) or ventrally (hemal arch) from the vertebral centrum. (...) certain common components [of vertebral structure] are found in nearly all vertebrate. A representative vertebra has a vertebral arch or neural arch, which extends dorsally around the spinal cord.[well established][VHOG] Note that humans do not have hemal arches, so VA=NA for FMA @@ -538884,14 +538956,14 @@ arch of centrum of vertebra - + - + FMA @@ -539469,7 +539541,7 @@ - + A unit of lung supplied by three to five terminal bronchioles and contained by fibrous septa. a pyramidal mass of lung tissue with sides that are bounded by the incomplete interlobular connective tissue septa and with a base, which is 1-2 cm in diameter, which usually faces the pleural surface of the lung; lobules that occupy a more central position in the lung are not well defined and are considered to consist of three to five pulmonary acini with proximate terminal bronchioles. @@ -539480,7 +539552,7 @@ secondary pulmonary lobule - + @@ -539493,7 +539565,7 @@ - + FMA @@ -539677,8 +539749,8 @@ - - + + In the head of the pancreas, the angle of junction of the lower and left lateral borders forms a prolongation, termed the uncinate process. During the embryonic development of the distal foregut, the duodenum c-shape is formed while rotating the ventral pancreatic bud into the dorsal bud. The dorsal and ventral pancreatic buds fuse. The dorsal pancreatic bud becomes the body, tail, and isthmus of the pancreas and the ventral pancreatic bud forms the pancreatic head and uncinate process[WP]. processus uncinatus @@ -539699,11 +539771,11 @@ uncinate process of pancreas http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg - + - + @@ -539716,13 +539788,13 @@ - + FMA - + Wikipedia @@ -539791,7 +539863,7 @@ - + consider merging with dorsal pancreatic bud. Starts at CS12 in human (EHDAA2, embryology.ch 'bud anlagen') EHDAA2:0001384 FMA:79793 @@ -539800,14 +539872,14 @@ UBERON:0010375 pancreas dorsal primordium - + - + EHDAA2 @@ -539834,7 +539906,7 @@ - + Starts at CS14 in human (EHDAA2) or CS13-14 (embryology.ch 'bud anlagen') EHDAA2:0001387 FMA:79794 @@ -539843,14 +539915,14 @@ UBERON:0010376 pancreas ventral primordium - + - + EHDAA2 @@ -539882,7 +539954,7 @@ - + Mesenchyme that develops_from a somatopleure. the way this class is defined also includes extraembryonic mesenchyme such as the amniotic mesenchyme; in future this may be restricted to embryonic derivatives EHDAA2:0001120 @@ -539890,7 +539962,7 @@ UBERON:0010377 mesenchyme from somatopleure - + @@ -539903,7 +539975,7 @@ - + EHDAA2 @@ -539934,14 +540006,14 @@ - + Mesenchyme that develops_from a splanchnopleure. EHDAA2:0001122 uberon UBERON:0010378 mesenchyme from splanchnopleure - + @@ -539954,7 +540026,7 @@ - + EHDAA2 @@ -539980,9 +540052,9 @@ - - - + + + The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid. declaring this to be both smooth muscle and part of the LPS leads to a disjointness violation (smooth muscle and striated muscle) @@ -540001,34 +540073,34 @@ superior tarsal muscle http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png - + - + - + - + dbpedia - + FMA - + underside of levator palpebrae superioris dbpedia @@ -540136,7 +540208,7 @@ - + @@ -540150,14 +540222,14 @@ UBERON:0010384 lumen of laryngopharynx - + - + FMA @@ -540258,7 +540330,7 @@ - + @@ -540280,14 +540352,14 @@ The proximal rib derives from the caudal half of somite[PMID:15906248] proximal segment of rib - + - + MA @@ -540322,9 +540394,9 @@ - - - + + + @@ -540354,15 +540426,15 @@ Sources vary as to whether the pterygoid corresponds to the pterygoid processes in general, or the latter/inner plate. pterygoid bone - + - + - + @@ -540375,19 +540447,19 @@ - + AAO - + MA - + ISBN:0073040584 Paleos @@ -540815,7 +540887,7 @@ - + @@ -540836,14 +540908,14 @@ spleen trabecular artery - + - + MP @@ -540954,7 +541026,7 @@ - + @@ -540974,14 +541046,14 @@ spleen central arteriole - + - + Wikipedia:Trabecular_arteries @@ -541103,8 +541175,8 @@ - - + + @@ -541120,11 +541192,11 @@ lateral ventricle subependymal layer - + - + @@ -541137,13 +541209,13 @@ - + MA - + Wikipedia @@ -541504,7 +541576,7 @@ - + @@ -541546,7 +541618,7 @@ barrel cortex - + @@ -541559,7 +541631,7 @@ - + MBA @@ -541647,7 +541719,7 @@ - + A part of the lymph node cortex in which B lymphocytes home to primary follicles to survey follicular dendritic cells (FDCs); antigen stimulated B cells proliferate and differentiate within the follicles forming distinctive germinal centers. MA:0002851 lymph node B cell dependent cortex @@ -541658,14 +541730,14 @@ lymph node B cell domain - + - + MP @@ -541709,7 +541781,7 @@ - + The paracortex and interfollicular cortex of the lymph node in which T lymphocytes home to survey dendritic cells. EMAPA:37663 MA:0002852 @@ -541725,14 +541797,14 @@ lymph node T cell domain - + - + MP @@ -541881,7 +541953,7 @@ - + @@ -541907,14 +541979,14 @@ lymph node germinal center mantle zone - + - + MA @@ -541980,7 +542052,7 @@ - + @@ -542012,14 +542084,14 @@ spleen B cell corona - + - + CL:tm @@ -542100,7 +542172,7 @@ - + A lymphoid follicle containing naive B cells. The cortex of lymph nodes, the white pulp of spleen, and mucosa associated lymphoid tissue all have these primary follicles FMA:55223 @@ -542111,7 +542183,7 @@ UBERON:0010422 primary nodular lymphoid tissue - + @@ -542124,7 +542196,7 @@ - + CL:tm @@ -542191,7 +542263,7 @@ - + EMAPA:37492 MA:0001397 MA:0001418 @@ -542205,14 +542277,14 @@ The distal rib derives from both somite halves[PMID:15906248] distal segment of rib - + - + MA @@ -542509,8 +542581,8 @@ - - + + One of: zygomaticus major, zygomaticus minor. EMAPA:37703 MA:0002404 @@ -542525,11 +542597,11 @@ origin: posterior braincase zygomaticus muscle - + - + @@ -542542,13 +542614,13 @@ - + Wikipedia - + Wikipedia @@ -542610,10 +542682,10 @@ - - - - + + + + A narrow, elongated muscle of the rotator cuff. EMAPA:36156 @@ -542632,45 +542704,45 @@ teres minor muscle http://upload.wikimedia.org/wikipedia/commons/c/c4/Gray810.png - + - + - + - + - + Wikipedia - + dbpedia - + lateral border of the scapula dbpedia - + inferior facet of greater tubercle of the humerus dbpedia @@ -542977,7 +543049,7 @@ - + The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space. not clear whether this should be classified as part of cranial dura mater, as the division only makes sense in this area FMA:231545 @@ -542985,7 +543057,7 @@ UBERON:0010507 layer of dura mater - + @@ -542998,7 +543070,7 @@ - + FMA @@ -543433,7 +543505,7 @@ - + An electric organ that is part of a tail. BTO:0000376 electric organ of tail @@ -543441,14 +543513,14 @@ UBERON:0010519 tail electric organ - + - + BTO @@ -543523,7 +543595,7 @@ - + Skeletal element that forms as a replacement or substitution of another element or tissue. VSAO:0000135 XAO:0004016 @@ -543532,7 +543604,7 @@ UBERON:0010522 replacement element - + @@ -543545,7 +543617,7 @@ - + cjm @@ -543564,7 +543636,7 @@ - + A vessel of the microcirculature, lying between the arterioles and venules; includes capillaries (blood and lymphatic), metarterioles and arteriovenous anastomoses. MESH:D055806 TAO:0005251 @@ -543574,14 +543646,14 @@ UBERON:0010523 microcirculatory vessel - + - + ZFA @@ -543606,7 +543678,7 @@ - + @@ -543633,14 +543705,14 @@ fibularis tertius - + - + dbpedia @@ -543713,7 +543785,7 @@ - + @@ -543737,14 +543809,14 @@ fibularis brevis http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray357.png - + - + dbpedia @@ -543876,7 +543948,7 @@ - + @@ -543901,14 +543973,14 @@ UBERON:0010531 metanephros induced blastemal cells - + - + EHDAA2 @@ -543966,7 +544038,7 @@ - + @@ -543983,7 +544055,7 @@ UBERON:0010532 primitive nephron - + @@ -543996,7 +544068,7 @@ - + EHDAA2 @@ -544028,7 +544100,7 @@ - + @@ -544041,14 +544113,14 @@ UBERON:0010533 metanephros cortex - + - + VHOG @@ -544113,7 +544185,7 @@ - + A primitive nephron that is part of a metanephros. primitive nephron EHDAA2:0001516 @@ -544123,14 +544195,14 @@ UBERON:0010535 primitive metanephric nephron - + - + EHDAA2 @@ -544152,7 +544224,7 @@ - + @@ -544163,7 +544235,7 @@ UBERON:0010536 nephron progenitor - + @@ -544176,7 +544248,7 @@ - + cjm @@ -544262,7 +544334,7 @@ - + @@ -544287,14 +544359,14 @@ UBERON:0010540 tarsus pre-cartilage condensation - + - + EHDAA2 @@ -544320,49 +544392,49 @@ - - + + - + A cartilaginous condensation that has the potential to develop into a tarsal bone. EHDAA2:0001977 uberon UBERON:0010541 tarsus cartilage element - + - + - + - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -544388,7 +544460,7 @@ - + @@ -544424,14 +544496,14 @@ UBERON:0010543 acropodial skeleton - + - + PHENOSCAPE:ni @@ -544478,8 +544550,8 @@ - - + + @@ -544516,24 +544588,24 @@ metacarpus skeleton https://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg - + - + - + PHENOSCAPE:ni - + many to one @@ -544654,8 +544726,8 @@ - - + + @@ -544687,24 +544759,24 @@ metatarsus skeleton http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png - + - + - + PHENOSCAPE:ni - + many to one @@ -544799,7 +544871,7 @@ - + @@ -544827,14 +544899,14 @@ UBERON:0010546 metapodial skeleton - + - + PHENOSCAPE:ni @@ -547671,7 +547743,7 @@ - + @@ -547699,14 +547771,14 @@ UBERON:0010688 skeleton of manual acropodium - + - + PHENOSCAPE:ni @@ -547904,7 +547976,7 @@ - + @@ -547930,14 +548002,14 @@ UBERON:0010696 skeleton of pedal acropodium - + - + PHENOSCAPE:ni @@ -548149,20 +548221,20 @@ - + EMAPA:32720 uberon UBERON:0010700 phalanx pre-cartilage condensation - + - + EMAPA @@ -548806,7 +548878,7 @@ - + Paired fin skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid. EFO:0003594 TAO:0000943 @@ -548818,14 +548890,14 @@ pectoral fin skeleton - + - + TAO @@ -548857,7 +548929,7 @@ - + Paired fin skeleton located in the abdominal position that consists of supporting endochondral radialsB and dermal fin rays or lepidotrichia. the girdle is part of the pelvic fin skeleton in ZFA - needs resolved TAO:0001387 @@ -548867,14 +548939,14 @@ UBERON:0010711 pelvic fin skeleton - + - + TAO @@ -548906,7 +548978,7 @@ - + Skeletal subdivision that is a segment of the limb skeleton. note the distinction between this and skeleton of limb VSAO:0005018 @@ -548914,14 +548986,14 @@ UBERON:0010712 limb skeleton subdivision - + - + VSAO @@ -549012,8 +549084,8 @@ - - + + An iliac endochondral element that is composed primarily of cartilage tissue. EHDAA2:0000808 EMAPA:18347 @@ -549023,11 +549095,11 @@ UBERON:0010714 iliac cartilage element - + - + @@ -549040,13 +549112,13 @@ - + EHDAA2 - + EHDAA2 @@ -549079,8 +549151,8 @@ - - + + A pubic endochondral element that is composed primarily of cartilage tissue. EHDAA2:0001573 EMAPA:26928 @@ -549089,11 +549161,11 @@ UBERON:0010718 pubic cartilage element - + - + @@ -549106,13 +549178,13 @@ - + EHDAA2 - + EHDAA2 @@ -549631,19 +549703,19 @@ - - + + An orbitosphenoid endochondral element that is composed primarily of a pre-cartilage condensation. EHDAA2:0003449 uberon UBERON:0010728 sphenoid lesser wing pre-cartilage condensation - + - + @@ -549656,13 +549728,13 @@ - + EHDAA2 - + EHDAA2 @@ -549689,8 +549761,8 @@ - - + + @@ -549704,11 +549776,11 @@ UBERON:0010732 alisphenoid pre-cartilage condensation - + - + @@ -549721,13 +549793,13 @@ - + EHDAA2 - + EHDAA2 @@ -549760,8 +549832,8 @@ - - + + An alisphenoid endochondral element that is composed primarily of cartilage tissue. EHDAA2:0003450 sphenoid greater wing cartilage condensation @@ -549770,11 +549842,11 @@ UBERON:0010733 alisphenoid cartilage element - + - + @@ -549787,13 +549859,13 @@ - + EHDAA2 - + EHDAA2 @@ -550118,7 +550190,7 @@ - + @@ -550135,14 +550207,14 @@ bone of appendage girdle complex - + - + UBERONREF:0000003 @@ -550416,7 +550488,7 @@ - + A sacral vertebra endochondral element that is composed primarily of cartilage tissue. EHDAA2:0001773 EMAPA:18009 @@ -550426,14 +550498,14 @@ UBERON:0010745 sacral vertebra cartilage element - + - + EHDAA2 @@ -550596,7 +550668,7 @@ - + A lymphoid follicle that is part of a lymph node. EMAPA:35527 MA:0000742 @@ -550605,14 +550677,14 @@ UBERON:0010748 lymph node follicle - + - + issues/7 MP-def @@ -550629,8 +550701,8 @@ - - + + The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle. The middle constrictor is a pharyngeal arches 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus of Vagus and attaches to the hyoid apparatus and the midline raphe.[FEED] FMA:46622 @@ -550655,11 +550727,11 @@ middle pharyngeal constrictor http://upload.wikimedia.org/wikipedia/commons/8/8f/Musculusconstrictorpharyngismedius.png - + - + @@ -550672,14 +550744,14 @@ - + pharyngeal plexus Wikipedia - + dbpedia @@ -550771,15 +550843,15 @@ - + - - + + @@ -550804,15 +550876,15 @@ prefrontal bone http://upload.wikimedia.org/wikipedia/commons/4/44/Dromaeosaurus_skull_en.svg - + - + - + @@ -550825,20 +550897,20 @@ - + orbital series ISBN:0073040584 - + ISBN:0073040584 - + Wikipedia @@ -550876,7 +550948,7 @@ - + @@ -550891,14 +550963,14 @@ UBERON:0010751 squamous part of temporal bone primordium - + - + EHDAA2 PMID:11523816 @@ -550920,7 +550992,7 @@ - + @@ -550939,14 +551011,14 @@ UBERON:0010752 exoccipital cartilage element - + - + EMAPA @@ -551583,14 +551655,14 @@ - + - + A pre-cartilage condensation that has the potential to develop into a radius bone. still to decide whether this is a distinct pre-cartilage condensation EHDAA2:0001586 @@ -551598,24 +551670,24 @@ UBERON:0010846 radius pre-cartilage condensation - + - + - + EHDAA2 - + EHDAA2 @@ -551641,14 +551713,14 @@ - + - + A pre-cartilage condensation that has the potential to develop into a ulna. EHDAA2:0002100 EHDAA:6226 @@ -551656,24 +551728,24 @@ UBERON:0010847 ulna pre-cartilage condensation - + - + - + EHDAA2 - + EHDAA2 @@ -551700,7 +551772,7 @@ - + @@ -551721,14 +551793,14 @@ UBERON:0010848 radius-ulna cartilage element - + - + EMAPA @@ -551766,7 +551838,7 @@ - + @@ -551785,14 +551857,14 @@ UBERON:0010849 tibia cartilage element - + - + EMAPA @@ -551818,7 +551890,7 @@ - + @@ -551831,14 +551903,14 @@ UBERON:0010850 tibia pre-cartilage condensation - + - + EHDAA2 @@ -551870,7 +551942,7 @@ - + @@ -551886,14 +551958,14 @@ UBERON:0010851 fibula cartilage element - + - + EMAPA @@ -551943,7 +552015,7 @@ - + A pre-cartilage condensation that has the potential to develop into a fibula. EHDAA2:0000509 EHDAA:6196 @@ -551953,14 +552025,14 @@ UBERON:0010852 fibula pre-cartilage condensation - + - + EHDAA2 @@ -551976,7 +552048,7 @@ - + A smooth, rounded eminence on the lateral portion of the articular surface of the humerus. It articulates with the cupshaped depression on the head of the radius, and is limited to the front and lower part of the bone. TODO - check AAO. @@ -551996,14 +552068,14 @@ capitulum of humerus http://upload.wikimedia.org/wikipedia/commons/b/b9/Capitulumhumeri.PNG - + - + FMA @@ -552898,8 +552970,8 @@ - - + + A small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the meatus. The tragus is generally believed to play a role in vertical sound localization in bats FMA:60998 @@ -552913,24 +552985,24 @@ tragus - + - + - + FMA - + Wikipedia-uncited @@ -553043,7 +553115,7 @@ - + Muscles of the pelvic girdle, hindlimb or pelvic fin. Muscles of the pelvic girdle, thigh, leg (crus), and foot (pes).[AAO] AAO:0000218 @@ -553061,14 +553133,14 @@ pelvic complex muscle - + - + prolog @@ -553135,7 +553207,7 @@ - + A muscle of a pectoral girdle, pectoral fin or anterior limb. the MA class belongs here, based on its current child classes Muscles of the pectoral girdle, arm, forearm, and hand (brachium, antebrachium, manus respectively).[AAO] @@ -553152,14 +553224,14 @@ UBERON:0010891 pectoral complex muscle - + - + prolog @@ -553211,10 +553283,10 @@ - - - - + + + + An endochondral element of the nasal capsule that forms septum between nasal capsules and usually remains unossified in mammals. @@ -553228,19 +553300,19 @@ UBERON:0010892 mesethmoid element - + - + - + - + @@ -553253,25 +553325,25 @@ - + TAO - + ISBN:0073040584 - + TAO - + TAO @@ -553478,14 +553550,14 @@ - + - + Dermal element that arises via intramembranous ossification and are developmentally distinct from true ribs that articulate with the vertebral column. @@ -553500,11 +553572,11 @@ UBERON:0010898 gastralium - + - + @@ -553517,13 +553589,13 @@ - + ISBN:0073040584 - + Wikipedia @@ -553806,9 +553878,9 @@ - - - + + + A primordium that develops into a clavicle bone. EHDAA2:0000254 clavicle primordium @@ -553817,34 +553889,34 @@ lateral part derives from a fish dermal bone while the medial part comes from a spur off the manubrium endochondral bone[JB] clavicle bone primordium - + - + - + - + EHDAA2 - + EHDAA2 - + mah shown in mouse PMC1352163 @@ -553868,21 +553940,21 @@ - + Third bone of the lower leg, normally restricted to the area of the knee, in multuberculates, monotremes and some therians. uberon UBERON:0010907 parafibula - + - + Palaeos @@ -553935,7 +554007,7 @@ - + Posterior ossification of the otic capsule. teleost fishes have a bone which is called the opisthotic. However, it is not homologous to the tetrapod opisthotic and the teleost otic capsule is all of a piece AAO:0010835 @@ -553944,14 +554016,14 @@ see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." opisthotic - + - + AAO @@ -554004,8 +554076,8 @@ - - + + Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints. Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO] FMA:23879 @@ -554018,11 +554090,11 @@ subdivision of skeleton - + - + @@ -554035,13 +554107,13 @@ - + UBERONREF:0000003 - + VSAO @@ -554080,8 +554152,8 @@ - - + + Skeletal element that forms around the notochord and is part of the vertebral column. we include a distinct subclass for bony vertebra In contrast to lampreys and jawed vertebrates, hagfishes were thought to lack vertebrae. Now, long overlooked vertebral rudiments have been analysed in hagfish, suggesting that vertebrae existed in the last common ancestor of all vertebrates.[well established][VHOG] @@ -554098,11 +554170,11 @@ UBERON:0010913 vertebral element - + - + @@ -554116,13 +554188,13 @@ - + VSAO - + cjm @@ -554288,7 +554360,7 @@ - + Fibers of the thyroarytenoid muscle that continue to the margin of the epiglottis; it closes the inlet to the larynx. Thexton, see notes from WG2.[FEED] not a distinct muscle in FMA @@ -554311,7 +554383,7 @@ thyroepiglotticus muscle http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png - + @@ -554324,7 +554396,7 @@ - + FMA @@ -554400,14 +554472,14 @@ - + - + @@ -554437,24 +554509,24 @@ muscle belly cricopharyngeus muscle - + - + - + FMA - + Wikipedia @@ -554523,18 +554595,18 @@ - - + + EHDAA2:0001909 uberon UBERON:0010929 stapedius pre-muscle condensation - + - + @@ -554547,13 +554619,13 @@ - + EHDAA2 - + EHDAA2 @@ -554652,10 +554724,10 @@ - - - - + + + + Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle. candidate for obsoletion. See https://github.com/obophenotype/uberon/issues/530 EMAPA:37498 @@ -554676,19 +554748,19 @@ https://github.com/obophenotype/uberon/issues/530 http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png - + - + - + - + @@ -554701,25 +554773,25 @@ - + FMA - + dbpedia - + dbpedia - + dbpedia @@ -554791,10 +554863,10 @@ - - - - + + + + The orbicularis oris is a superficial facial muscle with fibers that encircle the opening of the oral cavity that attaches to the maxilla, mandible, skin and modiolus, and that participates in oral/pharyngeal behaviors, and is innervated by the facial nerve (CN VII). @@ -554816,47 +554888,47 @@ https://github.com/obophenotype/uberon/issues/473 https://upload.wikimedia.org/wikipedia/commons/b/b6/Orbicularis_oris.jpg - + - + - + - + - + cranial nerve VII buccal branch of the facial nerve dbpedia - + Maxilla and mandible dbpedia - + Maxilla and mandible dbpedia - + Skin around the lips dbpedia @@ -554932,18 +555004,18 @@ - - + + EHDAA2:0002002 uberon UBERON:0010935 tensor tympani pre-muscle condensation - + - + @@ -554956,13 +555028,13 @@ - + EHDAA2 - + EHDAA2 @@ -554973,8 +555045,8 @@ - - + + FMA:46658 SCTID:244805001 musculus thyropharyngeus @@ -554989,24 +555061,24 @@ muscle belly thyropharyngeus muscle - + - + - + FMA - + dbpedia @@ -555055,12 +555127,12 @@ - - - - - - + + + + + + The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus. Salpingopharyngeus is a muscle that attaches to pharyngotympanic tube and the pharynx and is innervated by pharyngeal plexus of CN X and participates in oral/pharyngeal behaviors.[FEED] @@ -555077,27 +555149,27 @@ salpingopharyngeus muscle http://upload.wikimedia.org/wikipedia/commons/e/e3/Salpingopharyngeus.png - + - + - + - + - + - + @@ -555110,41 +555182,41 @@ - + FMA-abduced-lr - + vagus nerve and cranial accessory nerve dbpedia - + vagus nerve and cranial accessory nerve dbpedia - + lower part of the cartilage of the auditory tube dbpedia - + fibers pass downward and blend with the palatopharyngeus muscle to the upper border thyroid cartilage blending with constrictor fibers dbpedia - + fibers pass downward and blend with the palatopharyngeus muscle to the upper border thyroid cartilage blending with constrictor fibers dbpedia @@ -555188,7 +555260,7 @@ - + belly venter FMA:9719 @@ -555198,14 +555270,14 @@ UBERON:0010938 muscle belly - + - + FMA @@ -555391,7 +555463,7 @@ - + @@ -555430,14 +555502,14 @@ anterior digastric muscle https://github.com/obophenotype/uberon/issues/538 - + - + mandibular division (V3) of the trigeminal (CN V) via the mylohyoid nerve Wikipedia @@ -555507,7 +555579,7 @@ - + @@ -555543,14 +555615,14 @@ posterior digastric muscle - + - + digastric branch FEED Wikipedia @@ -555639,8 +555711,8 @@ - - + + The occipitofrontalis or epicranius is a muscle which covers parts of the skull. It consists of two parts or bellies: The occipital belly, near the occipital bone, and the frontal belly, near the frontal bone. A zone of muscle in FMA @@ -555659,24 +555731,24 @@ occipitofrontalis muscle http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png - + - + - + dbpedia - + dbpedia @@ -555723,7 +555795,7 @@ - + A belly of the occipitofrontalis muscle that is near the occipital bone. FMA:46758 SCTID:21405000 @@ -555737,14 +555809,14 @@ UBERON:0010947 occipitalis - + - + FMA @@ -555944,7 +556016,7 @@ - + A belly of the occipitofrontalis muscle that is near the frontal bone. FMA:46757 SCTID:368680005 @@ -555964,14 +556036,14 @@ frontalis muscle belly https://upload.wikimedia.org/wikipedia/commons/b/be/Musculus_frontalis.png - + - + FMA @@ -556043,9 +556115,9 @@ - - - + + + The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into 'Compressor nasalis' and 'Dilator nasalis'. FMA:46770 @@ -556062,15 +556134,15 @@ nasalis muscle http://upload.wikimedia.org/wikipedia/commons/b/bb/Nasalis.png - + - + - + @@ -556083,19 +556155,19 @@ - + FMA-abduced-lr - + dbpedia - + dbpedia @@ -556183,18 +556255,18 @@ - - + + EHDAA2:0002079 uberon UBERON:0010955 trapezius pre-muscle mass - + - + @@ -556207,13 +556279,13 @@ - + EHDAA2 - + EHDAA2 @@ -556223,7 +556295,7 @@ - + FMA:46638 pars pterygopharyngea (musculus constrictor pharyngis superior) pars pterygopharyngea musculus constrictoris pharyngis superioris @@ -556233,14 +556305,14 @@ UBERON:0010956 pterygopharyngeal part of superior pharyngeal constrictor - + - + FMA @@ -556270,9 +556342,9 @@ - - - + + + A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts. TODO - check child relationships NCIT:C32149 @@ -556286,36 +556358,36 @@ arytenoid muscle http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png - + - + - + - + recurrent laryngeal branch of the vagus dbpedia - + Arytenoid cartilage on one side dbpedia - + Arytenoid cartilage on opposite side dbpedia @@ -556367,7 +556439,7 @@ - + Any muscle organ that is part of either the head or the neck. NCIT:C32716 UMLS:C0448281 @@ -556377,14 +556449,14 @@ UBERON:0010959 craniocervical muscle - + - + prolog @@ -556406,18 +556478,18 @@ - - + + EHDAA2:0000455 uberon UBERON:0010961 erector spinae pre-muscle mass - + - + @@ -556430,13 +556502,13 @@ - + EHDAA2 - + EHDAA2 @@ -556446,13 +556518,13 @@ - + EHDAA2:0000459 uberon UBERON:0010962 extensor pre-muscle mass - + @@ -556465,7 +556537,7 @@ - + EHDAA2 @@ -556475,21 +556547,21 @@ - + EHDAA2:0003425 uberon UBERON:0010963 isa row in EHDAA2 trunk and cervical myotome group - + - + EHDAA2 @@ -556499,23 +556571,23 @@ - - - + + + EHDAA2:0000843 uberon UBERON:0010970 intercostal pre-muscle mass - + - + - + @@ -556528,19 +556600,19 @@ - + EHDAA2 - + cjm - + EHDAA2 @@ -556568,18 +556640,18 @@ - - + + EHDAA2:0000470 uberon UBERON:0010975 external oblique pre-muscle mass - + - + @@ -556592,13 +556664,13 @@ - + EHDAA2 - + EHDAA2 @@ -556608,13 +556680,13 @@ - + EHDAA2:0000543 uberon UBERON:0010977 flexor pre-muscle mass - + @@ -556627,7 +556699,7 @@ - + EHDAA2 @@ -556637,13 +556709,13 @@ - + EHDAA2:0000876 uberon UBERON:0010981 internal intercostal pre-muscle mass - + @@ -556656,7 +556728,7 @@ - + EHDAA2 @@ -556666,18 +556738,18 @@ - - + + EHDAA2:0000933 uberon UBERON:0010982 latissimus dorsi pre-muscle mass - + - + @@ -556690,13 +556762,13 @@ - + EHDAA2 - + EHDAA2 @@ -556706,18 +556778,18 @@ - - + + EHDAA2:0000993 uberon UBERON:0010983 levator scapulae pre-muscle mass - + - + @@ -556730,13 +556802,13 @@ - + EHDAA2 - + EHDAA2 @@ -556746,18 +556818,18 @@ - - + + EHDAA2:0001423 uberon UBERON:0010984 pectoral pre-muscle mass - + - + @@ -556770,13 +556842,13 @@ - + EHDAA2 - + EHDAA2 @@ -556786,18 +556858,18 @@ - - + + EHDAA2:0001636 uberon UBERON:0010985 rhomboid pre-muscle mass - + - + @@ -556810,13 +556882,13 @@ - + EHDAA2 - + EHDAA2 @@ -556826,8 +556898,8 @@ - - + + EHDAA2:0001833 EHDAA:5992 serratus anterior pre-muscle mass @@ -556835,11 +556907,11 @@ UBERON:0010986 serratus ventralis pre-muscle mass - + - + @@ -556852,13 +556924,13 @@ - + EHDAA2 - + EHDAA2 @@ -556874,18 +556946,18 @@ - - + + EHDAA2:0001913 uberon UBERON:0010987 sterno-mastoid pre-muscle mass - + - + @@ -556898,13 +556970,13 @@ - + EHDAA2 - + EHDAA2 @@ -556914,18 +556986,18 @@ - - + + EHDAA2:0002005 uberon UBERON:0010988 teres major pre-muscle mass - + - + @@ -556938,13 +557010,13 @@ - + EHDAA2 - + EHDAA2 @@ -556964,21 +557036,21 @@ - + A pre-muscle condensation that will develop into a transverospinalis muscle. EHDAA2:0002076 uberon UBERON:0010989 transverospinalis pre-muscle mass - + - + EHDAA2 @@ -556994,7 +557066,7 @@ - + The transversospinal muscles are a group of muscles of the human back. Their combined action is rotation and extension of the vertebral column. They include: semispinalis, spanning 4-6 vertebral segments semispinalis dorsi semispinalis cervicis semispinalis capitis multifidus, spanning 2-4 vertebral segments rotatores, spanning 1-2 vertebral segments rotatores cervicis rotatores thoracis rotatores lumborum. EHDAA2:0002075 @@ -557014,7 +557086,7 @@ transversospinales muscle http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png - + @@ -557027,7 +557099,7 @@ - + EHDAA2 @@ -557081,20 +557153,20 @@ - + EMAPA:17750 uberon UBERON:0010993 subscapularis pre-muscle mass - + - + EHDAA2 @@ -557104,7 +557176,7 @@ - + A triangular eminence projecting forward from the proximal epiphysis of the ulna[WP,modified]. coronoid process @@ -557121,7 +557193,7 @@ coronoid process of ulna http://upload.wikimedia.org/wikipedia/commons/6/60/Gray212.png - + @@ -557134,7 +557206,7 @@ - + FMA @@ -557235,7 +557307,7 @@ - + A thin layer of cartilage, usually hyaline, on the articular surface of bones in synovial joints. @@ -557265,7 +557337,7 @@ articular cartilage of joint - + @@ -557278,7 +557350,7 @@ - + Wikipedia @@ -557369,7 +557441,7 @@ - + @@ -557387,7 +557459,7 @@ pharyngeal arch cartilage - + @@ -557400,7 +557472,7 @@ - + ZFA @@ -557567,9 +557639,9 @@ - - - + + + Brachioradialis is a muscle of the forearm that acts to flex the forearm at the elbow. It is also capable of both pronation and supination, depending on the position of the forearm. It is attached to the distal styloid process of the radius by way of the brachioradialis tendon, and to the lateral supracondylar ridge of the humerus. FMA:38485 @@ -557583,35 +557655,35 @@ brachioradialis http://upload.wikimedia.org/wikipedia/commons/9/92/Brachioradialis.png - + - + - + - + dbpedia - + Lateral supracondylar ridge of the humerus dbpedia - + Distal radius dbpedia @@ -557647,9 +557719,9 @@ - - - + + + The flexor pollicis brevis is a muscle in the hand that flexes the thumb. It is one of three thenar muscles. It has both a superficial part and a deep part. FMA:37378 @@ -557663,34 +557735,34 @@ flexor pollicis brevis muscle http://upload.wikimedia.org/wikipedia/commons/c/ca/Musculusflexorpollicisbrevis.png - + - + - + - + dbpedia - + dbpedia - + Extensor pollicis longus and brevis dbpedia @@ -557720,12 +557792,12 @@ - - - - - - + + + + + + The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]. BTO:0002621 FMA:77179 @@ -557741,27 +557813,27 @@ spinalis muscle http://upload.wikimedia.org/wikipedia/commons/a/a4/Spinalis.png - + - + - + - + - + - + @@ -557774,40 +557846,40 @@ - + BTO - + dbpedia - + spinous process Thoracis: Upper lumbar and lower thoracic vertebrae. Cervicis: Ligamentum nuchae and spinous process of C7. dbpedia - + spinous process Thoracis: Upper lumbar and lower thoracic vertebrae. Cervicis: Ligamentum nuchae and spinous process of C7. dbpedia - + spinous process Thoracis: SP of upper thoracic vertebrae. Cervicis: SP of cervical vertebrae except C1. dbpedia - + spinous process Thoracis: SP of upper thoracic vertebrae. Cervicis: SP of cervical vertebrae except C1. dbpedia @@ -557925,7 +557997,7 @@ - + The pyramidalis is a small and triangular muscle, anterior to the Rectus abdominis, and contained in the rectus sheath. FMA:15568 @@ -557942,7 +558014,7 @@ pyramidalis http://upload.wikimedia.org/wikipedia/commons/9/91/Gray397.png - + @@ -557955,7 +558027,7 @@ - + pubic symphysis and pubic crest dbpedia @@ -558038,9 +558110,9 @@ - - - + + + A muscle that originates from the cuboid bone and divides into two portions, which are inserted into the medial and lateral sides of the base of the first phalanx of the great toe, a sesamoid bone being present in each tendon at its insertion. EMAPA:36259 @@ -558058,15 +558130,15 @@ flexor hallucis brevis muscle http://upload.wikimedia.org/wikipedia/commons/5/58/Musculus_flexor_hallucis_brevis.png - + - + - + @@ -558079,21 +558151,21 @@ - + plantar surface of cuneiform bones dbpedia - + medial and lateral sesamoid bones of first metatarsal dbpedia - + medial and lateral sesamoid bones of first metatarsal dbpedia @@ -558181,7 +558253,7 @@ - + @@ -558215,7 +558287,7 @@ aryepiglotticus muscle http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png - + @@ -558228,7 +558300,7 @@ - + FMA @@ -558344,9 +558416,9 @@ - - - + + + The obturator internus muscle originates on the medial surface of the obturator membrane, the ischium near the membrane, and the rim of the pubis. It exits the pelvic cavity through the lesser sciatic foramen. The obturator internus is situated partly within the lesser pelvis, and partly at the back of the hip-joint. It functions to help laterally rotate extended thigh and abduct flexed thigh, as well as to steady the femoral head in the acetabulum. Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris.[AAO] Definition generalized to accommodate AAO class - 'Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris.' [AAO:0010052] @@ -558368,15 +558440,15 @@ obturator internus http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG - + - + - + @@ -558389,19 +558461,19 @@ - + FMA - + FMA - + medial aspect of the Greater trochanter dbpedia @@ -558577,7 +558649,7 @@ - + The eighth thoracic vertebra counting from the top down. Note that members of this class are not necessarily homologous[ncit,modified]. EMAPA:19549 @@ -558594,7 +558666,7 @@ thoracic vertebra 8 - + @@ -558607,7 +558679,7 @@ - + FMA @@ -558648,7 +558720,7 @@ - + @@ -558673,14 +558745,14 @@ UBERON:0011060 perilymphatic channel - + - + MA @@ -558728,7 +558800,7 @@ - + @@ -558743,14 +558815,14 @@ UBERON:0011078 endolymphatic space - + - + Wikipedia @@ -558772,9 +558844,9 @@ - - - + + + Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone. The angular fuses with the articular bone in clupeocephalans forming the anguloarticular. angular @@ -558789,15 +558861,15 @@ UBERON:0011079 angular bone - + - + - + @@ -558810,20 +558882,20 @@ - + mandibular series ISBN:0073040584 - + AAO - + AAO @@ -558871,7 +558943,7 @@ - + @@ -558897,7 +558969,7 @@ palatoquadrate arch - + @@ -558910,7 +558982,7 @@ - + VHOG @@ -559290,7 +559362,7 @@ - + @@ -559305,14 +559377,14 @@ UBERON:0011095 vertebra pre-cartilage condensation - + - + EHDAA2-abduced @@ -559347,7 +559419,7 @@ - + The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve. FMA:52628 NCIT:C32908 @@ -559358,14 +559430,14 @@ UBERON:0011096 lacrimal nerve - + - + FMA @@ -559425,7 +559497,7 @@ - + A cruciate ligament in the neck forming part of the atlanto-axial joint. It consists of the transverse ligament of the atlas, along with additional fibers above and below. EMAPA:19010 FMA:25018 @@ -559440,14 +559512,14 @@ UBERON:0011106 cruciate ligament of atlas - + - + Wikipedia FMA @@ -559613,7 +559685,7 @@ - + The humeroulnar joint, is part of the elbow-joint or the Olecron Joint, between the ulna and humerus bones is the simple hinge-joint, which allows for movements of flexion, extension and circumduction. The Humero-Ulnar Joint is the junction of trochlear notch of the ulna and the trochlea of the humerus. Owing to the obliquity of the trochlea of the humerus, this movement does not take place in the antero-posterior plane of the body of the humerus. When the forearm is extended and supinated, the axis of the arm and forearm are not in the same line; the arm forms an obtuse angle with the forearm. During flexion, however, the forearm and the hand tend to approach the middle line of the body, and thus enable the hand to be easily carried to the face. The accurate adaptation of the trochlea of the humerus, with its prominences and depressions, to the semilunar notch of the ulna, prevents any lateral movement. Flexion is produced by the action of the Biceps brachii and Brachialis, assisted by the Brachioradialis, with a tiny contribution from the muscles arising from the medial epicondyle of the humerus. Extension is produced by the Triceps brachii and AnconC&us, with a tiny contribution from the muscles arising from the lateral epicondyle of the humerus, such as the Extensor digitorum communis. FMA:38854 SCTID:303064006 @@ -559626,7 +559698,7 @@ humeroulnar joint http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png - + @@ -559639,7 +559711,7 @@ - + FMA @@ -559682,7 +559754,7 @@ - + A hinge joint between the head of the radius and the capitulum of the humerus. FMA:38855 SCTID:182171008 @@ -559695,14 +559767,14 @@ humeroradial joint http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png - + - + FMA @@ -559777,7 +559849,7 @@ - + @@ -559796,7 +559868,7 @@ UBERON:0011113 inferior tibiofibular joint - + @@ -559809,7 +559881,7 @@ - + lateral side @@ -560175,7 +560247,7 @@ - + The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the thyroid cartilage. FMA:55101 NCIT:C32402 @@ -560189,7 +560261,7 @@ cricothyroid joint http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg - + @@ -560202,7 +560274,7 @@ - + cjm @@ -560251,7 +560323,7 @@ - + The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the arytenoid cartilage. FMA:55102 NCIT:C32397 @@ -560266,7 +560338,7 @@ cricoarytenoid joint http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray960.png - + @@ -560279,7 +560351,7 @@ - + cjm @@ -560439,21 +560511,21 @@ - + EMAPA:18714 temporo-mandibular joint primordium uberon UBERON:0011130 temporomandibular joint primordium - + - + EMAPA @@ -560487,7 +560559,7 @@ - + A skeletal joint that connects two adjacent metacarpals[FMA,modified]. FMA:35288 SCTID:303065007 @@ -560498,7 +560570,7 @@ UBERON:0011131 intermetacarpal joint - + @@ -560511,7 +560583,7 @@ - + two adjacent metacarpals @@ -560551,8 +560623,8 @@ - - + + A skeletal joint that connects two carpal bones. FMA:35292 NCIT:C32264 @@ -560568,11 +560640,11 @@ intercarpal joint http://upload.wikimedia.org/wikipedia/commons/3/37/Gray336.png - + - + @@ -560585,13 +560657,13 @@ - + FMA - + two adjacent carpals @@ -560655,7 +560727,7 @@ - + A joint that connects two adjacent metatarsals. In humans: The base of the first metatarsal is not connected with that of the second by any ligaments; in this respect the great toe resembles the thumb FMA:35219 @@ -560666,7 +560738,7 @@ intermetatarsal joint http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray358.png - + @@ -560679,7 +560751,7 @@ - + two adjacent metatarsals @@ -560745,8 +560817,8 @@ - - + + A cartilage element that lies between two successive vertebral centra. Block of cartilage, which usually ossifies, that lies between successive vertebral centra.[AAO] AAO:0000795 @@ -560754,25 +560826,25 @@ UBERON:0011135 intervertebral cartilage - + - + - + FMA MA - + between two centra @@ -560886,7 +560958,7 @@ - + Subdivision of the skeletal system which consists of the postcranial axial skeleton plus associated joints. axial skeletal system FMA:302077 @@ -560896,7 +560968,7 @@ postcranial axial skeletal system http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton - + @@ -560909,7 +560981,7 @@ - + cjm @@ -561133,7 +561205,7 @@ - + @@ -561146,7 +561218,7 @@ - + Subdivision of urinary system which consists of the kidney and the ureters. FMA:45658 NCIT:C61107 @@ -561157,24 +561229,24 @@ upper urinary tract - + - + - + FMA - + FMA-abduced-lr @@ -561200,7 +561272,7 @@ - + @@ -561221,14 +561293,14 @@ adductor muscle of hip http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + a small part of adductor magnus is innervated by the tibial nerve dbpedia @@ -561384,7 +561456,7 @@ - + Gland of the lamina epithelialis mucosae which perforate the lamina muscularis, with their adenomeres located in the submucosal connective tissue. BTO:0003751 EMAPA:37970 @@ -561393,14 +561465,14 @@ UBERON:0011148 submucosal gland - + - + perforates @@ -561423,7 +561495,7 @@ - + @@ -561438,14 +561510,14 @@ UBERON:0011149 Marshall's gland - + - + BTO @@ -561700,7 +561772,7 @@ - + AAO:0010371 TAO:0001401 XAO:0003178 @@ -561712,14 +561784,14 @@ UBERON:0011152 dorsal hyoid arch skeleton - + - + AAO @@ -561741,7 +561813,7 @@ - + AAO:0010372 EFO:0003684 TAO:0001402 @@ -561755,14 +561827,14 @@ ventral hyoid arch skeleton - + - + AAO @@ -561857,8 +561929,8 @@ - - + + Subdivision of skull that consists of the facial bones. EHDAA2:0002206 EHDAA:8361 @@ -561877,11 +561949,11 @@ facial skeleton http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg - + - + @@ -561894,13 +561966,13 @@ - + FMA - + PMID:11523816 @@ -562249,8 +562321,8 @@ - - + + A pre-cartilage condensation that has the potential to develop into a supraoccipital bone. EHDAA2:0001963 EHDAA:9534 @@ -562259,24 +562331,24 @@ UBERON:0011163 supraoccipital pre-cartilage condensation - + - + - + EHDAA2 - + EHDAA2-inferred @@ -562447,7 +562519,7 @@ - + Paired, intramembranous bones located within the nasal capsules and embedded in the nasal cartilages; it is pierced by the ductus nasolacrimalis. AAO:0000556 septomaxilla @@ -562466,14 +562538,14 @@ A small dermal bone of the facial series that is often absent; when present it is usually sunken beneath the surface bones and aids in forming the nasal cavity septomaxilla bone - + - + AAO @@ -562556,14 +562628,14 @@ - + - + A bone behind and above the orbit of which it commonly forms part of the border that is present in many vertebrates and corresponds to the postorbital process of the frontal bone of various birds and mammals. postfrontal @@ -562571,11 +562643,11 @@ UBERON:0011168 postfrontal bone - + - + @@ -562588,14 +562660,14 @@ - + orbital series ISBN:0073040584 - + ISBN:0073040584 @@ -562617,14 +562689,14 @@ - + - + The postorbital is one of the bones in vertebrate skulls which forms a portion of the dermal skull roof and, sometimes, a ring about the orbit. Generally, it is located behind the postfrontal and posteriorly to the orbital fenestra. In some vertebrates, the postorbital is fused with the postfrontal to create a postorbitofrontal. postorbital Wikipedia:Postorbital_bone @@ -562632,11 +562704,11 @@ UBERON:0011169 postorbital bone - + - + @@ -562649,14 +562721,14 @@ - + orbital series ISBN:0073040584 - + ISBN:0073040584 @@ -562796,7 +562868,7 @@ - + The term retrorubral area of the midbrain reticular nucleus refers to a region of the rat brain caudal and dorsal to the ventral tegmental area. It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus (Swanson-2004). BrainInfo distinguishes between the Retrorubral area of the midbrain reticular formation and the retrorubral nucleus. A8 retrorubal field @@ -562818,14 +562890,14 @@ UBERON:0011172 retrorubral area of midbrain reticular nucleus - + - + Obol @@ -562908,7 +562980,7 @@ - + One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the posterior nuclei of stria terminalis. The anterior division includes the anterolateral area of stria terminalis, anteromedial area of stria terminalis, oval nucleus of stria terminalis, juxtacapsular nucleus of stria terminalis, rhomboid nucleus of stria terminalis, dorsomedial nucleus of stria terminalis, fusiform nucleus of stria terminalis, ventral nucleus of stria terminalis, and the magnocellular nucleus of stria terminalis. anterior division @@ -562929,14 +563001,14 @@ UBERON:0011173 anterior division of bed nuclei of stria terminalis - + - + MA @@ -563018,7 +563090,7 @@ - + . fusiform nucleus BAMS:BSTfu @@ -563036,14 +563108,14 @@ UBERON:0011175 fusiform nucleus of stria terminalis - + - + MA @@ -563107,7 +563179,7 @@ - + . EMAPA:37667 MA:0000929 @@ -563120,14 +563192,14 @@ UBERON:0011176 oval nucleus of stria terminalis - + - + MA @@ -563161,7 +563233,7 @@ - + One of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the anterior nuclei of stria terminalis. The posterior division includes the principal nucleus of stria terminalis, interfascicular nucleus of stria terminalis, transverse nucleus of stria terminalis, premedullary nucleus of stria terminalis, dorsal nucleus of stria terminalis, the strial extension of stria terminalis, and the cell sparse zone of stria terminalis. posterior division BAMS:BSTp @@ -563179,14 +563251,14 @@ UBERON:0011177 posterior division of bed nuclei of stria terminalis - + - + MA @@ -563250,7 +563322,7 @@ - + . principal nucleus BAMS:BSTpr @@ -563266,14 +563338,14 @@ UBERON:0011178 principal nucleus of stria terminalis - + - + MA @@ -563325,7 +563397,7 @@ - + . transverse nucleus BAMS:BSTtr @@ -563341,14 +563413,14 @@ UBERON:0011179 transverse nucleus of stria terminalis - + - + MA @@ -563570,7 +563642,7 @@ - + Small, mucous accessory lacrimal glands that are found underneath the eyelid where the upper and lower conjuctivae meet. Their ducts unite into a rather long sinus which open into the fornix conjunctiva. There are approximately forty Krause glands in the region of the upper eyelid, and around 6 to 8 in the region of the lower lid. The function of these glands are to produce tears which are secreted onto the surface of the conjuctiva. accessory lacrimal gland conjunctival gland @@ -563585,14 +563657,14 @@ UBERON:0011186 Krause's gland - + - + ncithesaurus @@ -563632,7 +563704,7 @@ - + The greater tubercle of the humerus is situated lateral to the head of the humerus and posteriolateral to the lesser tubercle. Its upper surface is rounded and marked by three flat impressions. the highest of these gives ('superior facet') insertion to the Supraspinatus the middle ('middle facet') to the Infraspinatus. the lowest one ('inferior facet'), and the body of the bone for about 2.5 cm. below it, to the Teres minor. The lateral surface of the greater tubercle is convex, rough, and continuous with the lateral surface of the body. Between the greater tubercle and the lesser tubercle is the intertubercular sulcus (bicipital groove). FMA:23390 NCIT:C32700 @@ -563651,7 +563723,7 @@ ventral tubercle of humerus http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray326.png - + @@ -563664,7 +563736,7 @@ - + FMA @@ -563729,7 +563801,7 @@ - + The lesser tubercle of the humerus, although smaller, is more prominent than the greater tubercle: it is situated in front, and is directed medially and anteriorly. Above and in front it presents an impression for the insertion of the tendon of the Subscapularis. FMA:23393 @@ -563748,7 +563820,7 @@ lesser tubercle of humerus http://upload.wikimedia.org/wikipedia/commons/3/31/Tuberculumminushumeri.png - + @@ -563761,7 +563833,7 @@ - + FMA @@ -563824,8 +563896,8 @@ - - + + A lamina propria that is part of a large intestine. FMA:15654 @@ -563839,24 +563911,24 @@ lamina propria of large intestine - + - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships - + FMA @@ -564142,7 +564214,7 @@ - + An epithelium that is part of a inferior parathyroid gland. EHDAA2:0000824 EHDAA:3868 @@ -564151,14 +564223,14 @@ UBERON:0011195 inferior parathyroid epithelium - + - + EHDAA2 @@ -564190,7 +564262,7 @@ - + An epithelium that is part of a superior parathyroid gland. EHDAA2:0001957 EHDAA:3874 @@ -564198,14 +564270,14 @@ UBERON:0011196 superior parathyroid epithelium - + - + EHDAA2 @@ -564287,7 +564359,7 @@ - + A muscle layer that is part of a large intestine. FMA:14971 NCIT:C32927 @@ -564300,14 +564372,14 @@ UBERON:0011198 muscle layer of large intestine - + - + FMA @@ -564354,7 +564426,7 @@ - + A small indentation located in the prostatic urethra, at the apex of the urethral crest, on the seminal colliculus (verumontanum), laterally flanked by openings of the ejaculatory ducts. add df relations. Check mesopnephric duct FMA:19702 @@ -564376,14 +564448,14 @@ prostatic utricle http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray1153.png - + - + FMA @@ -564538,7 +564610,7 @@ - + A muscle layer that is part of a small intestine. FMA:14932 NCIT:C33569 @@ -564554,14 +564626,14 @@ UBERON:0011201 muscle layer of small intestine - + - + FMA @@ -564971,19 +565043,19 @@ - - + + migration pathway mesenchyme uberon NC migration pathway UBERON:0011210 migration pathway NC-derived mesenchyme - + - + @@ -564996,13 +565068,13 @@ - + EHDAA2-abduced - + EHDAA2-abduced ZFA-abduced @@ -565221,8 +565293,8 @@ - - + + EMAPA:36269 FMA:13400 SCTID:244934006 @@ -565233,11 +565305,11 @@ UBERON:0011217 serratus dorsalis muscle - + - + @@ -565250,13 +565322,13 @@ - + dbpedia-abduced - + dbpedia-abduced @@ -565278,7 +565350,7 @@ - + Origin: spinous processes of seventh cervical and sometimes two upper thoracic vertebrae; insertion: spinous processes of axis and sometimes of second to fourth cervical vertebrae; innervation: branches of cervical; action: extends vertebral column. BTO:0002623 @@ -565292,7 +565364,7 @@ The Spinalis cervicis (Spinalis colli) is an inconstant muscle, which arises from the lower part of the ligamentum nuchæ, the spinous process of the seventh cervical, and sometimes from the spinous processes of the first and second thoracic vertebrae, and is inserted into the spinosus process of the axis, and occasionally into the spinous processes of the two vertebrae below it. [Wikipedia:Spinalis#Spinalis_cervivis] spinalis cervicis muscle - + @@ -565305,7 +565377,7 @@ - + also spinous process of C7 dbpedia @@ -565383,7 +565455,7 @@ - + The mastoid process is a conical prominence projecting from the undersurface of the mastoid portion of the temporal bone. It is located just behind the external acoustic meatus, and lateral to the styloid process. Its size and form vary somewhat; it is larger in the male than in the female. This process serves for the attachment of the posterior belly of the digastric, sternocleidomastoid, splenius capitis, and longissimus capitis muscles. The word is derived from the Greek 'masto-', alluding to its resemblance to the breast. FMA:52872 NCIT:C12503 @@ -565399,7 +565471,7 @@ mastoid process of temporal bone - + @@ -565412,7 +565484,7 @@ - + ncithesaurus @@ -565526,7 +565598,7 @@ - + Muscles within the eye (bulbus oculi).[AAO] AAO:0010038 EMAPA:18808 @@ -565537,7 +565609,7 @@ UBERON:0011222 intra-ocular muscle - + @@ -565550,7 +565622,7 @@ - + EMAPA @@ -565751,8 +565823,8 @@ - - + + An ossified mesethmoid element. Endochondral bone that extends forward from the frontal bones and articulates posterolaterally with the lateral ethmoids and the vomer and parasphenoid ventrally. The mesethmoid is an unpaired bone[TAO:0000323]. TAO:0000323 @@ -565762,24 +565834,24 @@ UBERON:0011238 mesethmoid bone - + - + - + ZFA - + ZFA @@ -565840,10 +565912,10 @@ - - - - + + + + Region between capsules formed by anterior tips of neurocranial trabeculae. Anterior wall of the braincase.[AAO] Chondrocranium cartilage that is initially plate-like and formed from the anterior fusion of the trabecula crani. The ethmoid cartilage is paired.[TAO] @@ -565859,19 +565931,19 @@ ethmoid cartilage - + - + - + - + @@ -565884,25 +565956,25 @@ - + FMA - + AAO - + TAO - + ISBN:0073040584 @@ -565955,7 +566027,7 @@ - + The perpendicular plate of the ethmoid bone (vertical plate) is a thin, flattened lamina, polygonal in form, which descends from the under surface of the cribriform plate, and assists in forming the septum of the nose; it is generally deflected a little to one or other side. The anterior border articulates with the spine of the frontal bone and the crest of the nasal bones. The posterior border articulates by its upper half with the sphenoidal crest, by its lower with the vomer. The inferior border is thicker than the posterior, and serves for the attachment of the septal cartilage of the nose. The surfaces of the plate are smooth, except above, where numerous grooves and canals are seen; these lead from the medial foramina on the cribriform plate and lodge filaments of the olfactory nerves. perpendicular plate EMAPA:25114 @@ -565972,7 +566044,7 @@ UBERON:0011244 perpendicular plate of ethmoid - + @@ -565985,7 +566057,7 @@ - + FMA @@ -566357,14 +566429,14 @@ - + - + A skeletal muscle in the posterior triangle of the neck. It originates on the transverse processes of the upper cervical vertebrae and is inserted in the lateral half of the clavicle. Cleidocervicalis is one of two muscles, which make up the cleidocephalic component of the complex brachiocephalic muscle. It is a thin triangular muscle which has a broad origin on the median raphe of the mid dorsal aspect of the neck. The muscle is bounded caudally by the trapezius and cranially by the occipital component of the sternocephalicus . The cleidocervicalis tapers as it passes ventrally across the side of the neck to insert into the clavicular tendon. It is innervated by the accessory nerve. The brachiocephalic complex advances the limb, extends the shoulder joint and fixes the neck. The levator claviculae is an infrequently recognized anatomical variant in humans, distinguished from, for example, cervical adenopathy or a thrombosed vein, but a normal muscle in lower mammals and anthropoids. In humans, when present, it often appears unilaterally, most commonly on the left side, or bilaterally. @@ -566380,25 +566452,25 @@ UBERON:0011251 levator claviculae muscle - + - + - + nterior portion of transverse processes of C1 - C4 vertebrae dbpedia - + lateral half Wikipedia @@ -566633,9 +566705,9 @@ - - - + + + @@ -566647,34 +566719,34 @@ UBERON:0011263 femoral gland - + - + - + - + ISBN:0073040584 - + ISBN:0073040584 - + ISBN:0073040584 @@ -566829,8 +566901,8 @@ - - + + The quadratojugal is a small jaw bone that is present in most amphibians, reptiles, and birds, but has been lost in mammals. It is connected to the jugal as well as other bones, though these may vary with species. The quadratojugal bone is a small bone between the cheek and otic notch (Lecointre 380). Squamates (lizards and snakes) lack a quadratojugal bone (Schwenk 193). @@ -566849,11 +566921,11 @@ http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png https://upload.wikimedia.org/wikipedia/commons/6/6e/Archaeopteryx_skull.png - + - + @@ -566866,14 +566938,14 @@ - + temporal series ISBN:0073040584 - + AAO @@ -566949,7 +567021,7 @@ - + A secondary tongue located below the primary tongue in prosimian primates and some primitive mammals. This structure does not have taste buds or salivary glands. Wikipedia:Sublingua @@ -566959,14 +567031,14 @@ UBERON:0011268 sublingua - + - + Wikipedia @@ -567000,7 +567072,7 @@ - + The part of the trunk that is in the dorsum[cjm]. In humans, the subdivision of trunk which is demarcated from the trunk proper by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines, the external surface of the posterior abdominal wall; together with the trunk proper, it constitutes the trunk[FMA] EMAPA:35162 @@ -567015,7 +567087,7 @@ UBERON:0011270 dorsal trunk - + @@ -567028,7 +567100,7 @@ - + FMA @@ -567101,8 +567173,8 @@ - - + + compare with 'stratum basale of epidermis'. This class is the source for many adult structures - see WP2062. See also: 'enveloping layer of ectoderm' EHDAA2:0001845 uberon @@ -567111,11 +567183,11 @@ UBERON:0011272 embryonic skin basal layer - + - + @@ -567128,13 +567200,13 @@ - + EHDAA2 - + EHDAA2 @@ -567949,8 +568021,8 @@ - - + + A remnant of the Mesonephric duct that can be found next to the ovary and fallopian tube. FMA:18691 Wikipedia:Epoophoron @@ -567965,11 +568037,11 @@ UBERON:0011283 epoophoron - + - + @@ -567982,13 +568054,13 @@ - + Wikipedia - + Wikipedia @@ -568344,8 +568416,8 @@ - - + + EHDAA2:0001063 EHDAA:9563 manubrium sterni pre-cartilage condensation @@ -568353,11 +568425,11 @@ UBERON:0011301 manubrium sternum pre-cartilage condensation - + - + @@ -568370,13 +568442,13 @@ - + EHDAA2 - + EHDAA2 @@ -568504,7 +568576,7 @@ - + The superficial temporalis muscle is a separable part of the temporalis muscle that attaches to the temporalis fascia. MFMO:0000087 @@ -568518,14 +568590,14 @@ UBERON:0011305 superficial part of temporalis - + - + MFMO @@ -568668,7 +568740,7 @@ - + The suprazygomatic part of the temporalis muscle is a separable part of the deep temporalis that attaches to the superior surface of the temporal root of the zygomatic arch. MFMO:0000088 temporalis pars suprazygomatica @@ -568677,14 +568749,14 @@ UBERON:0011307 suprazygomatic part of temporalis - + - + FEED @@ -568759,7 +568831,7 @@ - + The zone of the mandible that carries the teeth. FMA:52827 @@ -568773,14 +568845,14 @@ body of mandible - + - + FMA @@ -568815,7 +568887,7 @@ - + .The fossa for the masseter. In some therapsids, the coronoid process of the dentary bears a large external depression which accommodates the masseter -- an important muscle in closing and in grinding motions of the jaw. fossa on the lateral surface of the mandible, located in the superior part of the ascending process.[FEED] uberon @@ -568823,14 +568895,14 @@ UBERON:0011310 masseteric fossa - + - + FMA @@ -569305,7 +569377,7 @@ - + The fibrocartilaginous plate that separates the joint into upper and lower cavities. BTO:0003675 FMA:57059 @@ -569326,7 +569398,7 @@ UBERON:0011319 disk of temporomandibular joint - + @@ -569339,7 +569411,7 @@ - + BTO @@ -569466,7 +569538,7 @@ - + A muscular branch of the mandibular nerve passing to the medial surface of the masseter muscle, which it innervates. FMA:53103 SCTID:280254006 @@ -569476,14 +569548,14 @@ UBERON:0011321 masseteric nerve - + - + FMA @@ -569644,8 +569716,8 @@ - - + + The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice. BAMS:sln FMA:6239 @@ -569659,24 +569731,24 @@ UBERON:0011326 superior laryngeal nerve - + - + - + Wikipedia - + FMA @@ -569723,7 +569795,7 @@ - + The deep temporal nerves, branches of the mandibular division of the trigeminal nerve, are two in number, anterior and posterior. They pass above the upper border of the pterygoideus externus and enter the deep surface of the temporalis. FMA:53187 SCTID:280255007 @@ -569734,14 +569806,14 @@ UBERON:0011327 deep temporal nerve - + - + FMA @@ -570202,7 +570274,7 @@ - + This is a neurosecretory organ rostral to the ampulla caudalis on the ventral surface of the distal end of the spinal cord. Receives axons from caudal neurosecretory nucleus, which contains Dahlgren cells that secrete urotensin I and II, implicated in osmotic regulation, cardiovascular function and reproduction[Butler]. BTO:0001848 @@ -570211,7 +570283,7 @@ Shares characteristics with neurohypophysis urophysis - + @@ -570224,7 +570296,7 @@ - + BTO @@ -570246,20 +570318,20 @@ - + A ventricle-like space at the end of the central canal. uberon UBERON:0011360 ampulla caudalis - + - + in caudal end of @@ -570658,7 +570730,7 @@ - + A transverse process of vertebra that is part of a vertebral bone 1. FMA:23981 SCTID:181895009 @@ -570667,14 +570739,14 @@ UBERON:0011370 transverse process of atlas - + - + FMA-abduced-lr @@ -570708,7 +570780,7 @@ - + The sternocephalicus is a flat muscle and its caudal border is adjacent to the ventral border of the brachiocephalicus. The lateral aspect of this muscle is crossed obliquely by the external jugular vein. It originates as a unit on the first sternebrae. The cranial portion of the muscle divides into two separate sections with different insertion points. These are the sternomastoideus and the sterno-occipitalis. The ventral portion, the sternomastiodeus is the stronger and main continuation of the sternocephalicus, which inserts on the mastoid part of the temporal bone. The thin but wide dorsal segment, the sterno-occipitalis attaches to the dorsal nuchal crest by a thin aponeurosis. The main action provided by the sternocephalicus is movement of the head and neck to the side. Ventral branches of the cervical nerves are attached to this muscle. NCIT:C117980 SCTID:21636001 @@ -570717,14 +570789,14 @@ UBERON:0011371 sternocephalicus muscle - + - + nuchal crest @@ -571228,7 +571300,7 @@ - + A chiasma of facial muscles held together by fibrous tissue, located lateral and slightly superior to each angle of the mouth. It is important in moving the mouth, facial expression and in dentistry. It derives its motor nerve supply from the facial nerve, and its blood supply from labial branches of the facial artery. It is contributed to by the following muscles: orbicularis oris, buccinator, levator anguli oris, depressor anguli oris, zygomaticus major, risorius quadratus labii superioris, quadratus labii inferioris. modiolus FMA:46837 @@ -571240,14 +571312,14 @@ facial modiolus https://github.com/obophenotype/uberon/issues/471 - + - + FMA @@ -571617,7 +571689,7 @@ - + @@ -571641,7 +571713,7 @@ UBERON:0011392 blood vessel internal elastic membrane - + @@ -571654,7 +571726,7 @@ - + MA @@ -572077,7 +572149,7 @@ - + @@ -572107,14 +572179,14 @@ iliococcygeus muscle - + - + FMA @@ -572173,7 +572245,7 @@ - + @@ -572193,14 +572265,14 @@ puborectalis muscle - + - + FMA @@ -572234,7 +572306,7 @@ - + @@ -572274,14 +572346,14 @@ pubococcygeus muscle - + - + FMA @@ -572506,7 +572578,7 @@ - + The Chondroglossus is sometimes described as a part of the Hyoglossus, but is separated from it by fibers of the Genioglossus, which pass to the side of the pharynx. It is about 2 cm. long, and arises from the medial side and base of the lesser cornu and contiguous portion of the body of the hyoid bone, and passes directly upward to blend with the intrinsic muscular fibers of the tongue, between the Hyoglossus and Genioglossus. FMA:46700 SCTID:244787000 @@ -572519,14 +572591,14 @@ UBERON:0011535 chondroglossus muscle - + - + FMA @@ -572650,7 +572722,7 @@ - + An anatomical cavity that is part of a esophagus. EMAPA:18380 FMA:9398 @@ -572668,14 +572740,14 @@ lumen of esophagus - + - + FMA @@ -572752,7 +572824,7 @@ - + The styloid process of the ulna projects from the medial and back part of the bone; it descends a little lower than the head, and its rounded end affords attachment to the ulnar collateral ligament of the wrist[WP,unvetted]. FMA:23628 @@ -572766,7 +572838,7 @@ styloid process of ulna - + @@ -572779,7 +572851,7 @@ - + FMA @@ -572999,8 +573071,8 @@ - - + + @@ -573016,24 +573088,24 @@ UBERON:0011577 flexural organ - + - + - + ZFA - + unvetted @@ -573164,7 +573236,7 @@ - + The collection of all skeletal elements in an individual limb or fin. Skeletal subdivision that is part of the paired limb/fin.[VSAO] VSAO:0000301 @@ -573176,14 +573248,14 @@ paired limb/fin skeleton - + - + ISBN:9780878932504 @@ -573230,7 +573302,7 @@ - + Proximal element of a free limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively[VSAO, modified]. Proximal element of the limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively.[VSAO] propodial @@ -573247,14 +573319,14 @@ UBERON:0011583 stylopodial skeleton - + - + VSAO @@ -573321,7 +573393,7 @@ - + @@ -573343,14 +573415,14 @@ UBERON:0011584 zeugopodial skeleton - + - + VSAO @@ -573454,8 +573526,8 @@ - - + + Odontogenic tissue that is collagen-rich and characteristic of vertebrate teeth and tooth-like structures (e.g., odontodes) deposited by preodontoblasts and odontoblasts that are typically excluded from the matrix. EMAPA:36439 VSAO:0000071 @@ -573467,11 +573539,11 @@ UBERON:0011587 pre-dentine - + - + @@ -573484,13 +573556,13 @@ - + https://github.com/obophenotype/uberon/wiki/The-neural-crest - + text definition @@ -573678,24 +573750,24 @@ - - - + + + EHDAA2:0002120 upper jaw future lip uberon UBERON:0011592 future upper lip - + - + - + @@ -573708,19 +573780,19 @@ - + EHDAA2 - + fusion - + fusion @@ -573873,7 +573945,7 @@ - + @@ -573888,14 +573960,14 @@ jaw region http://eol.org/collections/11578 - + - + EMAPA FMA-abduced ZFA-abduced @@ -573913,19 +573985,19 @@ - - + + EHDAA2:0001020 lower jaw future lip uberon UBERON:0011596 future lower lip - + - + @@ -573938,13 +574010,13 @@ - + EHDAA2 - + Wikipedia:Mandibular_prominence @@ -573997,8 +574069,8 @@ - - + + coronoid process AAO:0000103 TAO:0001673 @@ -574006,11 +574078,11 @@ UBERON:0011598 coronoid bone - + - + @@ -574023,14 +574095,14 @@ - + mandibular series ISBN:0073040584 - + AAO @@ -574046,7 +574118,7 @@ - + @@ -574068,14 +574140,14 @@ UBERON:0011599 lenticular process of incus bone - + - + FMA @@ -574295,7 +574367,7 @@ - + @@ -574312,14 +574384,14 @@ carina of sternum http://upload.wikimedia.org/wikipedia/commons/6/69/Br%C3%A9chet.png - + - + Wikipedia @@ -574391,7 +574463,7 @@ - + Replacement bone that is bilaterally paired and (in teleosts) articulates with the neurocranium dorsally and the opercle posteriorly[TAO,modified]. Replacement bone that is bilaterally paired and articulates with the neurocranium dorsally and the opercle posteriorly.[TAO] relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO] @@ -574413,7 +574485,7 @@ hyomandibular bone - + @@ -574426,7 +574498,7 @@ - + TAO @@ -574710,20 +574782,20 @@ - + uberon keratohyal element UBERON:0011609 ceratohyal element - + - + TAO-abduced @@ -574818,7 +574890,7 @@ - + Replacement bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and posterior ceratohyal posteriorly.[TAO] relationship loss: overlaps ceratohyal-branchiostegal ray joint (TAO:0001850)[TAO] @@ -574849,7 +574921,7 @@ UBERON:0011611 ceratohyal bone - + @@ -574862,7 +574934,7 @@ - + TAO @@ -575040,20 +575112,20 @@ - + The hypohyal is a ventral element of the hyoid arch which links the ceratohyal and the basihyal. uberon UBERON:0011613 hypohyal element - + - + TAO-abduced @@ -575069,21 +575141,21 @@ - + Skeletal element that is median and is the anterior-most element of the ventral hyoid arch. TAO:0001891 uberon UBERON:0011614 basihyal element - + - + TAO @@ -575154,7 +575226,7 @@ - + Replacement bone that is median and is the anterior-most bone of the ventral hyoid arch. TAO:0000316 VSAO_RETIRED:0000007 @@ -575165,7 +575237,7 @@ UBERON:0011618 basihyal bone - + @@ -575178,7 +575250,7 @@ - + TAO @@ -575512,8 +575584,8 @@ - - + + A zone of the frontal bone that consists of two thin triangular plates, the orbital plates, which form the vaults of the orbits, and are separated from one another by a median gap, the ethmoidal notch. FMA:52849 Wikipedia:Orbital_part_of_frontal_bone @@ -575524,24 +575596,24 @@ UBERON:0011627 orbital part of frontal bone - + - + - + FMA - + FMA-abduced-lr @@ -575582,24 +575654,24 @@ - - - + + + EHDAA2:0001495 future premaxilla uberon UBERON:0011628 early premaxilla - + - + - + @@ -575612,19 +575684,19 @@ - + ISBN:0073040584 - + EHDAA2 - + EHDAA2 @@ -575634,20 +575706,20 @@ - + supratemporal uberon UBERON:0011629 supratemporal bone - + - + temporal series ISBN:0073040584 @@ -575658,20 +575730,20 @@ - + intertemporal uberon UBERON:0011630 intertemporal bone - + - + temporal series ISBN:0073040584 @@ -575682,20 +575754,20 @@ - + tabular uberon UBERON:0011631 tabular bone - + - + temporal series ISBN:0073040584 @@ -575712,8 +575784,8 @@ - - + + A palatal bone which -- like many palatal bones -- may originally have developed as a dermal bone replacing part of the palatoquadrate, the primitive upper jaw. Like the palatine (also called dermopalatine), the ectopterygoid replaces the middle part of the autopalatine. It may be serially homologous with the palatine(s), but is somewhat specialized, being the last (most posterior in palatal view) of the series and bordering the fossa for the jaw muscles. In a typical tetrapod it abuts the palatine anteriorly, the maxilla laterally, the pterygoid or the fossa mandubuaris medially, and the fossa posteriorly. Dermal bone that forms the lateral border of the palate and articulates with the quadrate posteriorly, the entopterygoid medially and the dermopalatine and/or autopalatine antero-laterally. The ectopterygoid is a paired bone.[TAO] The ectopterygoid is often toothed.[TAO] @@ -575728,11 +575800,11 @@ ectopterygoid bone - + - + @@ -575745,14 +575817,14 @@ - + palatal series ISBN:0073040584 - + may be serially homologous with the palatines http://palaeos.com/vertebrates/bones/dermal/palatal-palatines.html @@ -575807,8 +575879,8 @@ - - + + The splenial is a small bone in the lower jaw of reptiles, amphibians and birds, usually located on the lingual side (closest to the tongue) between the angular and suprangular. AAO:0000573 Wikipedia:Splenial @@ -575818,11 +575890,11 @@ UBERON:0011635 splenial bone - + - + @@ -575835,14 +575907,14 @@ - + mandibular series ISBN:0073040584 - + AAO @@ -575870,8 +575942,8 @@ - - + + @@ -575896,11 +575968,11 @@ UBERON:0011636 surangular bone - + - + @@ -575914,14 +575986,14 @@ - + mandibular series ISBN:0073040584 - + paleos.com @@ -575995,8 +576067,8 @@ - - + + Osseous element of intramembranous origin that extends along the lingual margin of Meckel's cartilage. AAO:0000458 http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif @@ -576005,11 +576077,11 @@ UBERON:0011637 prearticular bone - + - + @@ -576022,14 +576094,14 @@ - + mandibular series ISBN:0073040584 - + AAO @@ -576072,7 +576144,7 @@ - + @@ -576096,7 +576168,7 @@ UBERON:0011639 frontoparietal bone - + @@ -576109,7 +576181,7 @@ - + orbital series ISBN:0073040584 @@ -576297,14 +576369,14 @@ - + An epithelium that develops_from a ectoderm and is part of a oral epithelium. EHDAA2:0004137 uberon UBERON:0011642 oral epithelium from ectoderm - + @@ -576317,7 +576389,7 @@ - + EHDAA2 @@ -576333,8 +576405,8 @@ - - + + A single large dorsal limb rotator muscle in lower tetrapods that runs from the lumber region and girdle to the femur. 3 muscles differentiate from this: psoas, iliacus and pectineus. UBERON:0014843 @@ -576343,24 +576415,24 @@ UBERON:0011643 puboischiofemoralis internus muscle - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -576388,7 +576460,7 @@ - + A single large ventral muscle in lower tetrapods that runs from the pubis and ischium to the femur. obturator externus and quadratus femoris are derivatives UBERON:0014844 @@ -576397,14 +576469,14 @@ UBERON:0011644 puboischiofemoralis externus muscle - + - + ISBN:0073040584 @@ -576489,8 +576561,8 @@ - - + + The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] Homolog of levator operculi and epihyoidean - or in mammals, the stapedius (the digastric opens the jaws)[Kardong] The (sphenodon) m. Depressor Mandibulae originates from the posterodorsal edge of the parietal and squamosal, and from a small mid-line portion of connective tissue AAO:0010715 @@ -576502,11 +576574,11 @@ UBERON:0011647 depressor mandibulae muscle - + - + @@ -576519,13 +576591,13 @@ - + ISBN:0073040584 - + ISBN:0073040584 @@ -576596,9 +576668,9 @@ - - - + + + Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw. The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] TAO:0000537 @@ -576610,15 +576682,15 @@ UBERON:0011649 levator operculi - + - + - + @@ -576631,19 +576703,19 @@ - + ISBN:0073040584 - + ISBN:0073040584 - + Kardong @@ -576675,14 +576747,14 @@ - + - + The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] VHOG:0000813 uberon @@ -576690,24 +576762,24 @@ Muscle in sharks that is homologous to levator operculi and depressor mandibulae / stapedius epihyoidean - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -576826,7 +576898,7 @@ - + @@ -576842,7 +576914,7 @@ UBERON:0011653 diapophysis of neural arch - + @@ -576855,7 +576927,7 @@ - + ISBN:0073040584 @@ -576883,7 +576955,7 @@ - + Dermal bone of pectoral girdle that is median and ventral in position. See discussion on pectoral girdles - change relationship to overlaps? Kardong: enlarged oval scale @@ -576896,7 +576968,7 @@ UBERON:0011655 interclavicle - + @@ -576909,7 +576981,7 @@ - + VSAO @@ -577400,21 +577472,21 @@ - + Enlarged section of perichordal tube that is arranged serially but out of phase with segmental musculature. AAO:0000738 uberon UBERON:0011675 perichordal ring - + - + AAO @@ -577588,8 +577660,8 @@ - - + + @@ -577612,11 +577684,11 @@ adductor mandibulae - + - + @@ -577629,13 +577701,13 @@ - + ISBN:0073040584 - + ISBN:0073040584 @@ -577688,8 +577760,8 @@ - - + + A muscle derivative of the mandibular levator that runs from the chondrocranium to the palatoquadrate cartilage. Found in sharks. In some fishes such as the chimera and in tetrapods the palatoquadrate becomes fused to the braincase and this muscle is absent. @@ -577697,11 +577769,11 @@ UBERON:0011684 levator palatoquadrati - + - + @@ -577714,13 +577786,13 @@ - + ISBN:0073040584 - + ISBN:0073040584 @@ -577742,9 +577814,9 @@ - - - + + + A jaw muscle arises near the orbit and tapers as it passes posteriorly to its insertion on the adductor mandibulae. Found in sharks. preorbitalis @@ -577752,15 +577824,15 @@ UBERON:0011685 preorbitalis muscle - + - + - + @@ -577773,19 +577845,19 @@ - + ISBN:0073040584 - + ISBN:0073040584 - + ISBN:0073040584 @@ -577801,19 +577873,19 @@ - - + + spiracularis uberon UBERON:0011686 spiracularis muscle - + - + @@ -577826,13 +577898,13 @@ - + ISBN:0073040584 - + ISBN:0073040584 @@ -577848,31 +577920,31 @@ - - + + levator hyomandibulae uberon UBERON:0011687 levator hyomandibulae muscle - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -577918,14 +577990,14 @@ - + - + Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue. VHOG:0001565 VSAO:0000113 @@ -577939,11 +578011,11 @@ UBERON:0011692 enameloid - + - + @@ -577956,13 +578028,13 @@ - + ZFA - + VSAO @@ -578012,19 +578084,19 @@ - - + + VHOG:0001157 extraembryonic umbilical artery uberon UBERON:0011693 extraembryonic portion of umbilical artery - + - + @@ -578037,13 +578109,13 @@ - + EHDAA2-abduced - + FMA @@ -578059,7 +578131,7 @@ - + Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta. Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] VHOG:0000599 @@ -578068,14 +578140,14 @@ UBERON:0011694 embryo portion of umbilical artery - + - + VHOG @@ -578165,21 +578237,21 @@ - + EHDAA2:0001721 extraembryonic umbilical artery right uberon UBERON:0011697 right extraembryonic umbilical artery - + - + EHDAA2 @@ -578195,7 +578267,7 @@ - + @@ -578211,14 +578283,14 @@ UBERON:0011698 midgut loop - + - + VHOG @@ -578250,7 +578322,7 @@ - + A hepatic sinusoid that is part of a caudate lobe of liver. EHDAA2:0001006 EHDAA:6992 @@ -578261,14 +578333,14 @@ UBERON:0011737 caudate lobe hepatic sinusoid - + - + EHDAA2 @@ -578300,7 +578372,7 @@ - + A hepatic sinusoid that is part of a quadrate lobe of liver. EHDAA2:0001013 EHDAA:8084 @@ -578311,14 +578383,14 @@ UBERON:0011738 quadrate lobe hepatic sinusoid - + - + EHDAA2 @@ -578376,7 +578448,7 @@ - + A cardiac valve leaflet that is part of a aortic valve. Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[uncertain][VHOG] EMAPA:18627 @@ -578387,14 +578459,14 @@ aortic valve leaflet - + - + MP @@ -578679,7 +578751,7 @@ - + An embryonic lymph sac that forms at the junction of the future internal jugular/anterior cardinals and subclavian veins. Lymphatic vessels develop from lymph sacs that arise from developing veins, which are derived from mesoderm. The first lymph sacs to appear are the paired jugular lymph sacs at the junction of the internal jugular and subclavian veins. [Wikipedia:Lymphatic_system][VHOG] EMAPA:18249 @@ -578689,14 +578761,14 @@ UBERON:0011765 jugular lymph sac - + - + VHOG @@ -578817,7 +578889,7 @@ - + compare with habenula The stalk emanates from the diencephalic roof at a left-of-medial position.[TAO] relationship loss: part_of pineal complex (TAO:0001359)[TAO] @@ -578836,14 +578908,14 @@ UBERON:0011768 pineal gland stalk - + - + EMAPA VHOG @@ -578924,7 +578996,7 @@ - + @@ -578939,7 +579011,7 @@ UBERON:0011770 mentomeckelian - + @@ -578952,7 +579024,7 @@ - + AAO @@ -579088,7 +579160,7 @@ - + A duct connecting the the utricle to the saccule in the membranous labyrinth of the ear. EMAPA:37980 FMA:61243 @@ -579104,14 +579176,14 @@ Alternate: leads from the utricle of the internal ear to the endolymphatic duct. - http://medical-dictionary.thefreedictionary.com/utriculosaccular+duct. We assume a 3-way connection utriculosaccular duct - + - + MP @@ -580356,7 +580428,7 @@ - + Superficial fascia is found in the subcutis in most regions of the body, blending with the reticular layer of the dermis. It is present on the face, over the upper portion of the sternocleidomastoid, at the nape of the neck, and overlying the sternum. It is comprised mainly of loose areolar connective tissue and adipose and is the layer that primarily determines the shape of a body. In addition to its subcutaneous presence, this type of fascia surrounds organs and glands, neurovascular bundles, and is found at many other locations where it fills otherwise unoccupied space. It serves as a storage medium of fat and water; as a passageway for lymph, nerve and blood vessels; and as a protective padding to cushion and insulate. Superficial fascia is present, but does not contain fat, in the eyelids, ear, scrotum, penis and clitoris. we follow FMA, BTO, NCIT and WP in making this a distinct class from hypodermis. BTO:0004525 @@ -580374,14 +580446,14 @@ superficial fascia - + - + FMA @@ -581283,7 +581355,7 @@ - + @@ -581319,14 +581391,14 @@ Alternate def: The internal acoustic meatus (or internal auditory meatus ) is an opening on the medial surface of the petrous temporal bone. It is through this passageway that the facial nerve (cranial nerve VII) and vestibulocochlear nerve (cranial nerve VIII) pass to reach their sites of innervation. The vestibulocochlear nerve divides at the internal acoustic meatus to continue as separate vestibular and cochlear components. [MURDOCH:908] internal acoustic meatus - + - + MP @@ -581970,7 +582042,7 @@ - + The oral part of the tongue anterior to the terminal sulcus. FMA:54641 SCTID:362090005 @@ -581980,14 +582052,14 @@ UBERON:0011876 body of tongue - + - + FMA @@ -582088,7 +582160,7 @@ - + A muscle layer that is part of a wall of esophagus. In the upper esophagus, part of the externa is skeletal muscle, rather than smooth muscle FMA:62998 @@ -582102,14 +582174,14 @@ UBERON:0011878 muscle layer of esophagus - + - + upper part Wikipedia:Muscular_layer @@ -582171,7 +582243,7 @@ - + The testes, at an early period of fetal life, are placed at the back part of the abdominal cavity, behind the peritoneum, and each is attached by a peritoneal fold, the mesorchium, to the mesonephros. AAO:0010530 EMAPA:17971 @@ -582182,7 +582254,7 @@ UBERON:0011879 mesorchium - + @@ -582195,7 +582267,7 @@ - + EMAPA @@ -582217,7 +582289,7 @@ - + @@ -582265,7 +582337,7 @@ anterior uvea - + @@ -582278,7 +582350,7 @@ - + MP @@ -582575,7 +582647,7 @@ - + @@ -582600,7 +582672,7 @@ UBERON:0011899 epimysium - + @@ -582613,7 +582685,7 @@ - + FMA @@ -582648,7 +582720,7 @@ - + The fibrous sheath enveloping each of the primary bundles of skeletal muscle fibers. FMA:9728 NCIT:C33299 @@ -582660,7 +582732,7 @@ UBERON:0011900 perimysium - + @@ -582673,7 +582745,7 @@ - + FMA @@ -582702,21 +582774,21 @@ - + FMA:70945 uberon UBERON:0011901 The hair matrix surrounds the top and sides of the dermal papilla. The hair matrix cells give rise to 6 different types of cells that make up the different layers of the hair shaft and the inner root sheath. hair matrix - + - + FMA @@ -582806,7 +582878,7 @@ - + @@ -582832,14 +582904,14 @@ plantaris - + - + Lateral supracondylar ridge of femur above lateral head of gastrocnemius @@ -582921,7 +582993,7 @@ - + . @@ -582938,14 +583010,14 @@ Mammalian gastrocnemius medialis and flexor hallucis longus arise from reptilian gastrocnemius internus[Kardong] gastrocnemius medialis - + - + FMA @@ -582987,7 +583059,7 @@ - + . EMAPA:36249 @@ -583003,14 +583075,14 @@ Mammalian gastrocnemius lateralis, soleus and plantaris arise from reptilian gastrocnemius externus[Kardong] gastrocnemius lateralis - + - + FMA @@ -583211,7 +583283,7 @@ - + @@ -583230,7 +583302,7 @@ line of Schwalbe - + @@ -583243,7 +583315,7 @@ - + MP @@ -583299,7 +583371,7 @@ - + Masses of developing blood cells attached to endothelium in the yolk sac. EHDAA2:0000177 EMAPA:16115 @@ -583310,14 +583382,14 @@ yolk sac blood island - + - + EHDAA2 @@ -583345,8 +583417,8 @@ - - + + in EHDAA2 gives rise to connecting stalk blood vessels and extraembryonic umbilical vessels EHDAA2:0003242 blood island of umbilical vesicle @@ -583355,11 +583427,11 @@ UBERON:0011921 connecting stalk blood islands - + - + @@ -583372,13 +583444,13 @@ - + EHDAA2 - + EHDAA2 @@ -583820,7 +583892,7 @@ - + @@ -583853,14 +583925,14 @@ pilosebaceous unit - + - + ISBN:0123813611 @@ -583958,7 +584030,7 @@ - + A bulb of hair follicle that is part of a vibrissa unit. EMAPA:26716 MA:0000783 @@ -583970,14 +584042,14 @@ vibrissa hair bulb https://github.com/obophenotype/mouse-anatomy-ontology/issues/56 - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -584016,7 +584088,7 @@ - + A hair root sheath that is part of a vibrissa unit. EMAPA:26724 MA:0000784 @@ -584027,14 +584099,14 @@ UBERON:0011937 vibrissa root sheath - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -584067,7 +584139,7 @@ - + A hair inner root sheath that is part of a vibrissa unit. EMAPA:36477 MA:0000785 @@ -584075,14 +584147,14 @@ UBERON:0011938 vibrissa inner root sheath - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -584108,7 +584180,7 @@ - + A hair outer root sheath that is part of a vibrissa unit. EMAPA:36478 MA:0000786 @@ -584116,14 +584188,14 @@ UBERON:0011939 vibrissa outer root sheath - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -584428,7 +584500,7 @@ - + The inner cell layer of the mammary epithelium bilayer that lines the luminal surface of mammary gland ducts and alveoli; luminal cells have only limited contact with the underlying basement membrane and surrounding connective tissue; they are secretory epithelial cells characterized by the expression of the receptors for systemic hormones, i.e. estrogens, progesterone and prolactin. EMAPA:37902 FMA:74458 @@ -584437,14 +584509,14 @@ UBERON:0011950 mammary gland luminal epithelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -584483,7 +584555,7 @@ - + A luminal layer of epithelium that is part of a prostate gland. FMA:74262 subdivision of luminal layer of epithelium of prostatic gland @@ -584491,14 +584563,14 @@ UBERON:0011951 prostate luminal epithelium - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -584722,7 +584794,7 @@ - + @@ -584754,7 +584826,7 @@ UBERON:0011958 acetabular labrum - + @@ -584767,7 +584839,7 @@ - + FMA @@ -584822,7 +584894,7 @@ - + A ring of fibrocartilage attached to the margin of the glenoid cavity of the scapula. consider classifying as 'annulus fibrosus' glenoid labrum @@ -584837,7 +584909,7 @@ UBERON:0011959 glenoid labrum of scapula - + @@ -584850,7 +584922,7 @@ - + FMA @@ -585077,7 +585149,7 @@ - + The talocalcaneonavicular articulation is an arthrodial joint: the rounded head of the talus being received into the concavity formed by the posterior surface of the navicular, the anterior articular surface of the calcaneus, and the upper surface of the plantar calcaneonavicular ligament. There are two ligaments in this joint: the articular capsule and the dorsal talonavicular. FMA:35204 SCTID:182211009 @@ -585088,14 +585160,14 @@ UBERON:0011963 talocalcaneonavicular joint - + - + FMA-modified @@ -585138,7 +585210,7 @@ - + Calcaneocuboid Articulation (articulation of the calcaneus with the cuboid). The ligaments connecting the calcaneus with the cuboid are five in number, viz. , the articular capsule, the dorsal calcaneocuboid, part of the bifurcated, the long plantar, and the plantar calcaneocuboid. FMA:35207 SCTID:361866008 @@ -585150,14 +585222,14 @@ UBERON:0011964 calcaneocuboid joint - + - + FMA-modified @@ -585320,7 +585392,7 @@ - + The facet of the tubercle of the rib forms an articulation with the adjacent transverse process of a thoracic vertebra. This is a plane type synovial joint called the costotransverse joint. This articulation is present in all but the eleventh and twelfth ribs. Ribs 1 to 10 have two joints in close proximity posteriorly; the costovertebral joints and the costotranseverse joints. This arrangement restrains the motion of the ribs allowing them to work in a parallel fashion during breathing. If a typical rib had only one joint posteriorly the resultant swivel action would allow a rib to be non-parallel with respect to the neighboring ribs making for a very inefficient respiratory mechanism. The ventral rami innervate the costotransverse joints. Therefore, therapeutic medial branch blocks are ineffectual. The ligaments of the joint are: Articular capsule Posterior costotransverse Anterior costotransverse Ligament of the neck of the rib Ligament of the tubercle of the rib. FMA:7952 SCTID:263328007 @@ -585330,7 +585402,7 @@ UBERON:0011967 costotransverse joint - + @@ -585343,7 +585415,7 @@ - + FMA @@ -586423,7 +586495,7 @@ - + A bronchiole that is part of a lower lobe of right lung. EHDAA2:0004094 EMAPA:19004 @@ -586436,14 +586508,14 @@ UBERON:0012059 right lung lower lobe bronchiole - + - + EHDAA2 @@ -586917,7 +586989,7 @@ - + @@ -586935,14 +587007,14 @@ bony part of hard palate - + - + FMA @@ -587263,21 +587335,21 @@ - + A pre-cartilage condensation that has the potential to develop into a patella. EMAPA:18510 uberon UBERON:0012081 patella pre-cartilage condensation - + - + EMAPA @@ -587292,8 +587364,8 @@ - - + + An anatomical cavity that is part of a bronchus. FMA:62646 SCTID:199401001 @@ -587303,7 +587375,7 @@ UBERON:0012082 bronchial lumen - + @@ -587312,20 +587384,20 @@ - + - + FMA - + FMA @@ -587910,7 +587982,7 @@ - + @@ -587936,14 +588008,14 @@ UBERON:0012108 postorbital bar - + - + orbital series @@ -588624,7 +588696,7 @@ - + @@ -588640,7 +588712,7 @@ UBERON:0012126 fibulare - + @@ -588654,7 +588726,7 @@ - + AAO @@ -588737,7 +588809,7 @@ - + Outermost point on an external nose or snout. EMAPA:37915 FMA:59518 @@ -588754,14 +588826,14 @@ nose tip - + - + FMA @@ -589092,7 +589164,7 @@ - + @@ -589107,14 +589179,14 @@ A prepollex does not contain phalanges nor does it articulate with a metacarpal. It articulates with elements of the carpal (wrist) skeleton[AAO:DB]. editor note: TODO add articulation relations prepollex skeleton - + - + AAO @@ -589478,7 +589550,7 @@ - + A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton. some sources call this the acropodium. see https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod uberon @@ -589487,14 +589559,14 @@ skeleton of manual digitopodium https://github.com/obophenotype/uberon/wiki/Subdivisions-of-the-autopod - + - + FMA @@ -589656,7 +589728,7 @@ - + BAMS:ACBc BAMS:AcbC DHBA:10340 @@ -589676,14 +589748,14 @@ core of nucleus accumbens - + - + NIFSTD @@ -589729,7 +589801,7 @@ - + Crescent shaped outer zone of the nucleus accumbens, defined by a combination of chemoarchitecture and afferent and efferent connections. The shell is distinguished from the more centrally located core through the notable reduction in staining for the calcium-binding protein calbindin D28K, which is dense in the core and virtually absent in the shell. BAMS:ACBs BAMS:AcbSh @@ -589749,14 +589821,14 @@ shell of nucleus accumbens - + - + NIFSTD @@ -589853,7 +589925,7 @@ - + The middle suprarenal arteries (middle capsular arteries; suprarenal arteries) are two small vessels which arise, one from either side of the abdominal aorta, opposite the superior mesenteric artery. They pass laterally and slightly upward, over the crura of the diaphragm, to the suprarenal glands, where they anastomose with suprarenal branches of the inferior phrenic and renal arteries. In the fetus these arteries are of large size. FMA:14754 @@ -589869,14 +589941,14 @@ middle suprarenal artery - + - + Wikipedia @@ -589940,8 +590012,8 @@ - - + + EHDAA2:0000494 EMAPA:16794 SCTID:361514006 @@ -589955,11 +590027,11 @@ UBERON:0012175 acoustico-facial VII-VIII ganglion complex - + - + @@ -589972,13 +590044,13 @@ - + EHDAA2 - + cjm @@ -590068,7 +590140,7 @@ - + in MA, this is the superclass of the 3 innominate elements (pelvic girdle bones) and caudal and sacral vertebrae. This class is included to ensure consistency across anatomical ontologies EMAPA:37249 MA:0000532 @@ -590076,7 +590148,7 @@ UBERON:0012179 bone of pelvis - + @@ -590089,7 +590161,7 @@ - + MA @@ -590155,7 +590227,7 @@ - + Tonsils consist of an extensive system of crypts, which result in a large internal surface. The tonsils contain four lymphoid compartments that influence immune functions, namely the reticular crypt epithelium, the extrafollicular area, the mantle zones of lymphoid follicles, and the follicular germinal centers. In human palatine tonsils, the very first part exposed to the outside environment is tonsillar epithelium. FMA:55044 @@ -590171,7 +590243,7 @@ tonsil crypt - + @@ -590184,7 +590256,7 @@ - + MA @@ -590791,7 +590863,7 @@ - + @@ -590811,7 +590883,7 @@ urinary bladder vasculature - + @@ -590823,7 +590895,7 @@ - + EMAPA @@ -591165,7 +591237,7 @@ - + @@ -591194,14 +591266,14 @@ UBERON:0012243 nuptial pad - + - + ISBN:0073040584 @@ -591235,20 +591307,20 @@ - + A temporary layer between old and new skin that is invalided by white blood cells[Kardong]. uberon UBERON:0012244 stratum intermedium of epidermis - + - + ISBN:0073040584 @@ -591460,7 +591532,7 @@ - + @@ -591496,14 +591568,14 @@ ectocervix - + - + BTO @@ -591755,7 +591827,7 @@ - + The inferior phrenic arteries are two small vessels, which supply the diaphragm but present much variety in their origin. They may arise separately from the front of the aorta, immediately above the celiac artery, or by a common trunk, which may spring either from the aorta or from the celiac artery. Sometimes one is derived from the aorta, and the other from one of the renal arteries; they rarely arise as separate vessels from the aorta. They diverge from one another across the crura of the diaphragm, and then run obliquely upward and lateralward upon its under surface. The left phrenic passes behind the esophagus, and runs forward on the left side of the esophageal hiatus. The right phrenic passes behind the inferior vena cava, and along the right side of the foramen which transmits that vein. Near the back part of the central tendon each vessel divides into a medial and a lateral branch. The medial branch curves forward, and anastomoses with its fellow of the opposite side, and with the musculophrenic and pericardiacophrenic arteries. The lateral branch passes toward the side of the thorax, and anastomoses with the lower intercostal arteries, and with the musculophrenic. The lateral branch of the right phrenic gives off a few vessels to the inferior vena cava; and the left one, some branches to the esophagus. Each vessel gives off superior suprarenal branches to the suprarenal gland of its own side. The spleen and the liver also receive a few twigs from the left and right vessels respectively. FMA:14734 @@ -591769,14 +591841,14 @@ inferior phrenic artery http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png - + - + Wikipedia @@ -591865,9 +591937,9 @@ - - - + + + A manual digit found in Aves that is the most preaxial position and is morphologically similar to digit 1 in the standard tetrapod configuration and develops from embryonic digit 2, with contributions from embryonic digit 1. alula alula (Aves) @@ -591881,34 +591953,34 @@ Hypothesized to be homologous to manual digit 1 of other tetrapods. Develops from the embryonic digit that is positionally the 2nd, with contributions from the 1st alular digit - + - + - + - + PhenotypeRCN:Oct2012 - + PMID:10220427 - + PMID:10220427 @@ -591937,8 +592009,8 @@ - - + + A manual digit found in Aves that is morphologically similar to digit 2 in the standard tetrapod configuration and develops from embryonic digit 3. uberon digit II of manus @@ -591951,24 +592023,24 @@ Hypothesized to be homologous to manual digit 2 of other tetrapods manual major digit (Aves) - + - + - + PhenotypeRCN:Oct2012 - + PMID:10220427 @@ -592001,8 +592073,8 @@ - - + + A manual digit found in Aves that is morphologically similar to digit 3 in the standard tetrapod configuration and develops from embryonic digit 4. uberon digit III of manus @@ -592015,24 +592087,24 @@ Hypothesized to be homologous to manual digit 3 of other tetrapods manual minor digit (Aves) - + - + - + PhenotypeRCN:Oct2012 - + PMID:10220427 @@ -592134,7 +592206,7 @@ - + A splint bone in the metacarpal region. in future this class may be replaced by a more taxon-neutral class grouping metarsal bones 2 or 4 metacarpal bone 2 or 4 @@ -592143,14 +592215,14 @@ UBERON:0012268 equine forelimb splint bone - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -592182,7 +592254,7 @@ - + A splint bone in the metatarsal region. in future this class may be replaced by a more taxon-neutral class grouping metacarpal bones 2 or 4 metatarsal bone 2 or 4 @@ -592191,14 +592263,14 @@ UBERON:0012269 equine hindlimb splint bone - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -592855,7 +592927,7 @@ - + One of two hemispheres of the embryo at the zygote or blastula stage[WP,modified]. Like many of the early_development classes in this ontology, this class requires review for its applicability across vertebrates. See the tracker item for further discussion. FMA:293351 @@ -592867,14 +592939,14 @@ hemisphere of embryo https://upload.wikimedia.org/wikipedia/commons/5/5e/Oocyte_Poles.jpg - + - + XAO @@ -592905,8 +592977,8 @@ - - + + An epithelial sac that is part of a Rathke's pouch. See https://github.com/obophenotype/uberon/issues/1305 EHDAA2:0001473 @@ -592915,24 +592987,24 @@ UBERON:0012287 Rathkes pouch epithelium - + - + - + EHDAA2 - + EHDAA2 @@ -593169,7 +593241,7 @@ - + @@ -593184,14 +593256,14 @@ We presume this is distinct from AAO:0001003, an external integumentary structure - check with amphibian anatomy ontology developers. AO notes: the text def states mesenchymal swelling, EHDAA2 splits into mesenchymal and epithelial parts embryonic cloacal fold - + - + EHDAA2 @@ -593220,7 +593292,7 @@ - + A slight elevation flanking the cloacal membrane and derived from a cloacal fold; anal folds form the border of the anus. EHDAA2:0004012 EMAPA:37392 @@ -593228,7 +593300,7 @@ UBERON:0012293 anal fold - + @@ -593241,7 +593313,7 @@ - + EHDAA2 @@ -593470,8 +593542,8 @@ - - + + @@ -593490,24 +593562,24 @@ male urethral crest - + - + - + FMA-modified - + cjm @@ -593560,7 +593632,7 @@ - + @@ -593578,14 +593650,14 @@ female urethral crest - + - + cjm @@ -594201,7 +594273,7 @@ - + EHDAA2:0004599 EMAPA:17637 FMA:312685 @@ -594209,7 +594281,7 @@ UBERON:0012312 maxillary process ectoderm - + @@ -594222,7 +594294,7 @@ - + EHDAA2 @@ -594232,9 +594304,9 @@ - - - + + + EHDAA2:0000039 EMAPA:16389 ectoderm of maxillary component @@ -594242,15 +594314,15 @@ UBERON:0012313 1st arch maxillary ectoderm - + - + - + @@ -594263,19 +594335,19 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -594415,7 +594487,7 @@ - + @@ -594459,14 +594531,14 @@ UBERON:0012316 primitive palate - + - + palatal series ISBN:0073040584 @@ -594787,7 +594859,7 @@ - + The deep cervical artery (Profunda cervicalis) is an artery of the neck. FMA:10659 @@ -594799,14 +594871,14 @@ deep cervical artery - + - + FMA @@ -594828,7 +594900,7 @@ - + The ascending cervical artery is a small branch which arises from the inferior thyroid artery as that vessel is passing behind the carotid sheath; it runs up on the anterior tubercles of the transverse processes of the cervical vertebrC& in the interval between the Scalenus anterior and Longus capitis. To the muscles of the neck it gives twigs which anastomose with branches of the vertebral, and it sends one or two spinal branches into the vertebral canal through the intervertebral foramina to be distributed to the medulla spinalis and its membranes, and to the bodies of the vertebrC&, in the same manner as the spinal branches from the vertebral. It anastomoses with the ascending pharyngeal and occipital arteries. FMA:52489 @@ -594840,14 +594912,14 @@ ascending cervical artery - + - + FMA Wikipedia @@ -595019,7 +595091,7 @@ - + Small saliences on the ridge of the glans of the male genital organs. FMA:19653 @@ -595031,14 +595103,14 @@ UBERON:0012327 pearly penile papule - + - + FMA @@ -595411,7 +595483,7 @@ - + @@ -595428,14 +595500,14 @@ UBERON:0012336 perianal skin - + - + MA @@ -595457,7 +595529,7 @@ - + The cauda equina is a structure within the lower end of the spinal column of most vertebrates, that consists of nerve roots and rootlets from above. The space in which the cerebrospinal fluid is present is actually an extension of the subarachnoid space. EMAPA:37468 FMA:52590 @@ -595473,14 +595545,14 @@ UBERON:0012337 cauda equina - + - + MESH @@ -596172,20 +596244,20 @@ - + EHDAA2:0004588 uberon UBERON:0012361 internal anal region - + - + EHDAA2 @@ -596334,7 +596406,7 @@ - + A muscle layer that is part of an intestine. FMA:15697 intestinal muscularis propria @@ -596344,14 +596416,14 @@ UBERON:0012367 muscle layer of intestine - + - + FMA @@ -596737,7 +596809,7 @@ - + @@ -596762,14 +596834,14 @@ muscle layer of urinary bladder - + - + FMA @@ -596935,7 +597007,7 @@ - + A circular muscle layer of muscular coat that is part of a small intestine smooth muscle. EMAPA:37562 FMA:14935 @@ -596953,14 +597025,14 @@ UBERON:0012401 small intestine smooth muscle circular layer - + - + FMA @@ -597042,7 +597114,7 @@ - + A longitudinal muscle layer of muscular coat that is part of a small intestine smooth muscle. EMAPA:37563 FMA:14936 @@ -597060,14 +597132,14 @@ UBERON:0012402 small intestine smooth muscle longitudinal layer - + - + FMA @@ -597208,7 +597280,7 @@ - + @@ -597230,14 +597302,14 @@ taenia coli - + - + FMA @@ -597656,7 +597728,7 @@ - + Blood-forming tissue, consisting of reticular fibers and cells. Bone marrow in humans, kidney interstitium in Danio, within a stroma of reticuloendothelial tissue CALOHA:TS-2142 @@ -597672,7 +597744,7 @@ UBERON:0012429 hematopoietic tissue - + @@ -597685,7 +597757,7 @@ - + defitional @@ -598716,7 +598788,7 @@ - + An anatomical space that is enclosed by a cloaca. the ZFA class belongs here as it is an anatomical space. See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/102/ TAO:0000330 @@ -598727,14 +598799,14 @@ UBERON:0012463 cloacal lumen - + - + cjm @@ -598942,20 +599014,20 @@ - + EHDAA2:0004589 uberon UBERON:0012469 external anal region - + - + EHDAA2 @@ -598983,7 +599055,7 @@ - + @@ -599016,14 +599088,14 @@ UBERON:0012471 hepatogastric ligament - + - + FMA @@ -599058,7 +599130,7 @@ - + @@ -599080,14 +599152,14 @@ UBERON:0012472 hepatoduodenal ligament - + - + FMA @@ -599184,7 +599256,7 @@ - + @@ -599200,14 +599272,14 @@ UBERON:0012474 hepatic cecum - + - + BTO @@ -599245,7 +599317,7 @@ - + The collection of all skeletal elements in a pectoral complex - i.e. the combination of free limb or fin plus pectoral girdle. FMA:24139 uberon @@ -599259,14 +599331,14 @@ skeleton of pectoral complex - + - + FMA @@ -599334,7 +599406,7 @@ - + The collection of all skeletal elements in a pelvic complex - i.e. the combination of free limb or fin plus pelvic girdle. FMA:24140 uberon @@ -599348,14 +599420,14 @@ skeleton of pelvic complex - + - + FMA @@ -599407,9 +599479,9 @@ - - - + + + The posterior region of the neck, including the suboccipital region. nuchal nape @@ -599432,15 +599504,15 @@ dorsal part of neck - + - + - + @@ -599453,19 +599525,19 @@ - + FMA - + FMA - + FMA @@ -600026,7 +600098,7 @@ - + A muscularis mucosa that is part of a duodenum. EMAPA:27243 @@ -600042,7 +600114,7 @@ muscularis mucosae of duodenum - + @@ -600055,7 +600127,7 @@ - + FMA @@ -600087,7 +600159,7 @@ - + A muscularis mucosa that is part of a rectum. EMAPA:27093 FMA:15687 @@ -600098,14 +600170,14 @@ UBERON:0012497 muscularis mucosae of rectum - + - + FMA @@ -600282,7 +600354,7 @@ - + A serous membrane that is part of a fundus of stomach. EMAPA:27157 FMA:17073 @@ -600291,14 +600363,14 @@ UBERON:0012503 serosa of fundus of stomach - + - + FMA @@ -600656,7 +600728,7 @@ - + The ampulla is the second portion of the uterine tube. It is an intermediate dilated portion, which curves over the ovary. It is the most common site of human fertilization. The word ampulla is from the Latin for flask. BTO:0004285 @@ -600675,14 +600747,14 @@ ampulla of uterine tube - + - + FMA @@ -601959,7 +602031,7 @@ - + Just before each crus of the penis meets its fellow it presents a slight enlargement, named by Kobelt the bulb of the corpus spongiosum penis. It is homologous to the vestibular bulbs in females. FMA:19614 Wikipedia:Bulb_of_penis @@ -601975,14 +602047,14 @@ UBERON:0013128 bulb of penis - + - + FMA @@ -602149,9 +602221,9 @@ - - - + + + One of the small straight arteries of the red pulp of the spleen; a branch of the spleen central artery that supplies the red pulp[WP,modified]. FMA:16038 @@ -602163,34 +602235,34 @@ penicillar arteriole - + - + - + - + FMA - + Wikipedia:Trabecular_arteries - + Wikipedia:Trabecular_arteries @@ -602226,7 +602298,7 @@ - + A phrenic artery that arises from the lower part of the thoracic aorta and is distributed to the posterior part of the upper surface of the diaphragm, and anastomoses with the musculophrenic and pericardiacophrenic arteries. FMA:4163 @@ -602240,14 +602312,14 @@ superior phrenic artery - + - + Wikipedia @@ -602347,7 +602419,7 @@ - + A vein that drains a lip. SCTID:367664002 labial vein of face @@ -602358,14 +602430,14 @@ UBERON:0013136 vein of lip - + - + FMA @@ -602437,8 +602509,8 @@ - - + + @@ -602459,24 +602531,24 @@ UBERON:0013138 coronary ligament of liver - + - + - + FMA - + FMA-modified @@ -602614,7 +602686,7 @@ - + @@ -602632,7 +602704,7 @@ UBERON:0013141 capillary bed - + @@ -602645,7 +602717,7 @@ - + FMA @@ -602678,7 +602750,7 @@ - + A vein that drains the soleus. SCTID:397427005 @@ -602690,7 +602762,7 @@ soleal vein - + @@ -602703,7 +602775,7 @@ - + cjm @@ -602736,7 +602808,7 @@ - + A vein that drains the gastrocnemius. SCTID:264481007 @@ -602748,7 +602820,7 @@ divided in medial gastrocnemius vein (vena medialis gastrocnemii), lateral gastrocnemius vein (vena lateralis gastrocnemii), and intergemellar vein (Vena intergemellaris), the vein ascending between the two heads of the gastrocnemius[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] gastrocnemius vein - + @@ -602761,7 +602833,7 @@ - + cjm @@ -602789,7 +602861,7 @@ - + FMA:44559 uberon @@ -602799,14 +602871,14 @@ The term genicular venous plexus (plexus venosus genicularis) should replace the term genicular veins. At the knee, deep veins do not correspond exactly to the branches of the popliteal artery (articular arteries). They are arranged in a complex plexus of interconnecting veins.[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] vein of genicular venous plexus - + - + FMA @@ -602822,7 +602894,7 @@ - + FMA:44320 SCTID:302677006 posteromedial vein of thigh @@ -602830,14 +602902,14 @@ UBERON:0013145 accessory saphenous vein - + - + FMA @@ -602853,8 +602925,8 @@ - - + + . EHDAA2:0000185 EMAPA:18631 @@ -602866,11 +602938,11 @@ UBERON:0013146 venous system of brain - + - + @@ -602883,13 +602955,13 @@ - + EHDAA2 - + VHOG-modified @@ -602912,7 +602984,7 @@ - + EHDAA2:0001102 mesencephalic vesicle uberon @@ -602920,14 +602992,14 @@ gives rise to midbrain vesicle which gives rise to cerebral aqueduct early mesencephalic vesicle - + - + EHDAA2 @@ -602943,8 +603015,8 @@ - - + + EHDAA2:0001103 SCTID:361481005 midbrain vesicle @@ -602953,24 +603025,24 @@ develops into cerebral aqueduct early midbrain vesicle - + - + - + EHDAA2 - + EHDAA2 @@ -602986,7 +603058,7 @@ - + EHDAA2:0000101 SCTID:361482003 rhombencephalic vesicle @@ -602995,14 +603067,14 @@ gives rise of 4th ventricle hindbrain vesicle - + - + EHDAA2 @@ -603024,7 +603096,7 @@ - + @@ -603045,7 +603117,7 @@ UBERON:0013150 future brain vesicle - + @@ -603058,7 +603130,7 @@ - + EHDAA2 @@ -603119,7 +603191,7 @@ - + A temporary opening between the developing ventricles of the heart. The ventricles arise as a single cavity is divided by the developing interventricular septum. Before the septum closes completely, the remaining opening between the two ventricles is termed the interventricular foramen. EHDAA2:0004064 Wikipedia:Primary_interventricular_foramen @@ -603130,7 +603202,7 @@ Phenotype notes: In some individuals, the foramen fails to close, leading to an interventricular septal defect known as a patent interventricular foramen interventricular foramen of heart - + @@ -603143,7 +603215,7 @@ - + EHDAA2 @@ -603165,7 +603237,7 @@ - + Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves. Arachnoid granulations (or arachnoid villi) are small protrusions of the arachnoid (the thin second layer covering the brain) through the dura mater (the thick outer layer). They protrude into the venous sinuses of the brain, and allow cerebrospinal fluid (CSF) to exit the brain, and enter the blood stream. Largest granulations lie along the superior sagittal sinus, a large venous space running from front to back along the centre of the head (on the inside of the skull). They are, however, present along other dural sinuses as well. Smaller granulations are called villi, large calcified ones are referred to as pacchionian bodies[Wikipedia:Arachnoid_granulation]. FMA:83980 @@ -603187,14 +603259,14 @@ UBERON:0013153 arachnoid villus - + - + FMA @@ -603290,10 +603362,10 @@ - - - - + + + + EHDAA2:0000040 EMAPA:16390 endoderm of maxillary component @@ -603301,19 +603373,19 @@ UBERON:0013154 1st arch maxillary endoderm - + - + - + - + @@ -603326,25 +603398,25 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -603360,9 +603432,9 @@ - - - + + + EHDAA2:0000032 EMAPA:16383 ectoderm of mandibular component @@ -603370,15 +603442,15 @@ UBERON:0013155 1st arch mandibular ectoderm - + - + - + @@ -603391,19 +603463,19 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -603419,10 +603491,10 @@ - - - - + + + + EHDAA2:0000033 EMAPA:16384 endoderm of mandibular component @@ -603430,19 +603502,19 @@ UBERON:0013156 1st arch mandibular endoderm - + - + - + - + @@ -603455,25 +603527,25 @@ - + EHDAA2 - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -603489,8 +603561,8 @@ - - + + EHDAA2:0000046 EMAPA:16395 1st arch maxillary-mandibular groove ectoderm @@ -603499,24 +603571,24 @@ UBERON:0013157 1st arch maxillary-mandibular cleft - + - + - + EHDAA2 - + EHDAA2 @@ -603657,7 +603729,7 @@ - + A telencephalic ventricle that is in_the_left_side_of a telencephalon. https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern FMA:78450 @@ -603667,14 +603739,14 @@ UBERON:0013161 left lateral ventricle - + - + FMA @@ -603700,7 +603772,7 @@ - + A telencephalic ventricle that is in_the_right_side_of a telencephalon. https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern FMA:78449 @@ -603710,14 +603782,14 @@ UBERON:0013162 right lateral ventricle - + - + FMA @@ -604329,14 +604401,14 @@ - + - + @@ -604353,24 +604425,24 @@ phonic lip http://upload.wikimedia.org/wikipedia/commons/a/a5/Delphinschaedel.svg - + - + - + check for sperm whales - + absent in baleen whales @@ -604392,7 +604464,7 @@ - + @@ -604412,14 +604484,14 @@ dorsal bursa http://upload.wikimedia.org/wikipedia/commons/a/a5/Delphinschaedel.svg - + - + check for sperm whales @@ -604563,7 +604635,7 @@ - + A structure consisting of a pair of anterior and posterior dorsal bursae in which a pair of phonic lips are embedded, along with the bursal cartilage and a blowhole ligament. all odontocetes except sperm whales posses two bilaterally placed MLDB complexes, placed just below the floor of the vestibular sac MLDB complex @@ -604571,14 +604643,14 @@ UBERON:0013188 monkey lips dorsal bursa complex - + - + ISBN:0120885522 @@ -604867,7 +604939,7 @@ - + A strand of pelage hair that is crimped and grows in clusters. MESH:D014935 @@ -604879,14 +604951,14 @@ UBERON:0013196 strand of wool - + - + cjm @@ -605573,7 +605645,7 @@ - + @@ -605589,14 +605661,14 @@ UBERON:0013216 udder - + - + 1 @@ -605713,7 +605785,7 @@ - + The parotoid gland (alternatively, paratoid gland) is an external skin gland on the back, neck, and shoulder of toads and some frogs and salamanders. It secretes a milky alkaloid substance to deter predators. The substance produced acts as a neurotoxin. Parotoid glands are sometimes said to be wart-like in appearance, though warts are abnormal growths caused by viral infections while parotoid glands are normal, healthy parts of the animals that bear them. The vague similarity in appearance, however, is the reason behind the mistaken belief that touching a toad causes warts. Wikipedia:Parotoid_gland uberon @@ -605721,14 +605793,14 @@ UBERON:0013219 parotoid gland - + - + Wikipedia @@ -605750,8 +605822,8 @@ - - + + @@ -605772,24 +605844,24 @@ UBERON:0013220 foramen of Panizza - + - + - + Wikipedia - + Wikipedia @@ -605968,7 +606040,7 @@ - + @@ -605986,14 +606058,14 @@ UBERON:0013224 Ciaccio's gland - + - + ncithesaurus @@ -606578,7 +606650,7 @@ - + A future glans that is part of a male genital tubercle. EMAPA:29252 glans of male genital tubercle @@ -606586,14 +606658,14 @@ UBERON:0013239 future glans penis - + - + EMAPA @@ -606619,7 +606691,7 @@ - + A future glans that is part of a female genital tubercle. EMAPA:19170 glans of female genital tubercle @@ -606627,14 +606699,14 @@ UBERON:0013240 future glans clitoris - + - + EMAPA @@ -606650,7 +606722,7 @@ - + The precursor of the urethra. In humans, the urethral groove is a temporary linear indentation on the underside (ventral side) of the male penis during embryonic development. It typically appears around 8 weeks of gestation and becomes closed into a normal male urethra by the 12th week SCTID:361531004 @@ -606662,14 +606734,14 @@ UBERON:0013241 embryonic urethral groove - + - + Wikipedia @@ -606783,8 +606855,8 @@ - - + + An epithelial tube that develops from a Mullerian duct in a male. Later degenerates. consider separating the duct from the degenerating portion, as in EMAPA EHDAA2:0001052 @@ -606795,24 +606867,24 @@ UBERON:0013247 male paramesonephric duct - + - + - + EHDAA2 - + EHDAA2 @@ -606840,7 +606912,7 @@ - + A small collection of convoluted tubules, situated in front of the lower part of the cord above the head of the epididymis. These tubes are lined with columnar ciliated epithelium, and probably represent the remains of a part of the Wolffian body but are functionless and vestigial. The Wolffian body operates as a kidney (metanephros) in fishes and amphibians, but the corresponding tissue is co-opted to form parts of the male reproductive system in other classes of vertebrate. The paradidymis represents a remnant of an unused, atrophied part of the Wolffian body[WP,modified]. FMA:74055 SCTID:279643005 @@ -606852,14 +606924,14 @@ UBERON:0013248 paradidymis - + - + Wikipedia @@ -606894,7 +606966,7 @@ - + A collection of a few scattered rudimentary tubules child, situated in the broad ligament between the epoophoron and the uterus. FMA:18692 Wikipedia:Paroophoron @@ -606905,7 +606977,7 @@ UBERON:0013249 paroophoron - + @@ -606918,7 +606990,7 @@ - + Wikipedia @@ -606958,7 +607030,7 @@ - + In connection with the fimbriae of the uterine tube, or with the broad ligament close to them, there are frequently one or more small pedunculated vesicles. These are termed the vesicular appendages of the epoophoron. one of the small pedunculated structures attached to the uterine tubes near their fimbriated end; remnants of the mesonephric ducts[http://medical-dictionary.thefreedictionary.com/]. hydatid of Morgagni @@ -606978,7 +607050,7 @@ UBERON:0013250 vesicular appendage of epoophoron - + @@ -606991,7 +607063,7 @@ - + cranial end Wikipedia @@ -607057,7 +607129,7 @@ - + Remnant in a female of the portion of the embryonic mesonephric duct that develops into the ductus deferens in males. FMA:76609 ductus deferens vestige @@ -607067,7 +607139,7 @@ UBERON:0013262 remnnant of ductus deferens - + @@ -607080,7 +607152,7 @@ - + Wikipedia @@ -607491,7 +607563,7 @@ - + @@ -607511,14 +607583,14 @@ UBERON:0013399 blood vessel layer of choroid - + - + FMA @@ -607578,7 +607650,7 @@ - + The asterion is the point on the skull corresponding to the posterior end of the parietomastoid suture. FMA:76625 Wikipedia:Asterion_(anatomy) @@ -607588,7 +607660,7 @@ asterion of skull http://upload.wikimedia.org/wikipedia/commons/5/56/Asterion.PNG - + @@ -607601,7 +607673,7 @@ - + Wikipedia @@ -607623,7 +607695,7 @@ - + @@ -607645,7 +607717,7 @@ bregma http://upload.wikimedia.org/wikipedia/commons/2/24/Kort-lang-skalle.gif - + @@ -607658,7 +607730,7 @@ - + Wikipedia @@ -607690,7 +607762,7 @@ - + Anatomical cavity that is the lumen of the skull and contains the brain. EMAPA:37497 FMA:9644 @@ -607708,14 +607780,14 @@ cranial cavity http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg - + - + Wikipedia @@ -607763,21 +607835,21 @@ - + The crotaphion refers to two points on the skull at the tips of the greater wing of sphenoid bone. It is near the pterion. Wikipedia:Crotaphion uberon UBERON:0013412 crotaphion - + - + Wikipedia @@ -607799,7 +607871,7 @@ - + The Epicranium is the medical term for the collection of structures covering the cranium. It consists of the muscles, aponeurosis, and skin. TODO - add parts SCTID:362625008 @@ -607808,14 +607880,14 @@ UBERON:0013417 epicranium - + - + Wikipedia @@ -607858,7 +607930,7 @@ - + The infratemporal fossa is an irregularly shaped cavity, situated below and medial to the zygomatic arch. Boundaries defined by: anteriorly, by the infratemporal surface of the maxilla and the ridge which descends from its zygomatic process posteriorly, by the articular tubercle of the temporal and the spinal angularis of the sphenoid superiorly, by the greater wing of the sphenoid below the infratemporal crest, and by the under surface of the temporal squama, containing the foramen ovale, which transmits the mandibular branch of the trigeminal nerve, and the foramen spinosum, which transmits the middle meningeal artery inferiorly, by the medial pterygoid muscle attaching to the mandible medially, by the lateral pterygoid plate laterally, by the ramus of mandible, which contains the mandibular foramen, leading to the mandibular canal through which the inferior alveolar nerve passes. This also contains the lingula, a triangular piece of bone that overlies the mandibular foramen antero-medially. Finally, the mylohyoid groove descends obliquely transmitting the mylohyoid nerve the only motor branch of the anterior division of the trigeminal nerve. FMA:75308 MESH:D000080884 @@ -607872,14 +607944,14 @@ infratemporal fossa http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png - + - + Wikipedia @@ -607913,21 +607985,21 @@ - + The jugal point is the point at the anterior end of the upper border of the zygomatic arch where the masseteric and maxillary edges meet at an angle. Wikipedia:Jugal_point uberon UBERON:0013423 jugal point - + - + Wikipedia @@ -607957,7 +608029,7 @@ - + The occipital angle is rounded and corresponds with the point of meeting of the sagittal and lambdoidal sutures-a point which is termed the lambda (after the Greek letter of the same name); in the fetus this part of the skull is membranous, and is called the posterior fontanelle. lambda FMA:264773 @@ -607968,14 +608040,14 @@ anatomical point connecting sagittal and lambdoidal sutures http://upload.wikimedia.org/wikipedia/commons/5/50/Gray1193.svg - + - + Wikipedia @@ -608003,7 +608075,7 @@ - + The point of the sagittal suture which is on a level with the parietal foramina. FMA:264774 Wikipedia:Obelion @@ -608011,14 +608083,14 @@ UBERON:0013426 obelion - + - + Wikipedia @@ -608069,7 +608141,7 @@ - + The ophryon is the point in the forehead just above the optic foramen, or eyesocket, and glabella. FMA:284930 Wikipedia:Ophryon @@ -608077,14 +608149,14 @@ UBERON:0013428 ophryon - + - + Wikipedia @@ -608100,7 +608172,7 @@ - + The porion is the point on the human skull located at the upper margin of each ear canal (external auditory meatus, external acoustic meatus). It underlies the tragus. The anatomical landmark has significance in biological anthropology and craniometry. FMA:264711 Wikipedia:Porion @@ -608109,14 +608181,14 @@ porion http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png - + - + Wikipedia @@ -608157,7 +608229,7 @@ - + The pterygomaxillary fissure is a fissure of the human skull. It is vertical, and descends at right angles from the medial end of the inferior orbital fissure; it is a triangular interval, formed by the divergence of the maxilla from the pterygoid process of the sphenoid. It connects the infratemporal with the pterygopalatine fossa, and transmits the terminal part of the maxillary artery. Alveolar branches of the maxillary nerve go from the pterygopalatine fossa to the infratemporal region via this fissure. In older texts, the pterygomaxillary fissure is sometimes called the pterygopalatine fissure. FMA:76627 Wikipedia:Pterygomaxillary_fissure @@ -608166,7 +608238,7 @@ pterygomaxillary fissure http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png - + @@ -608179,7 +608251,7 @@ - + Wikipedia @@ -608299,7 +608371,7 @@ - + The speno-maxillary fossa is a small triangular space situated at the angle of the junction of the spheno-maxillary and pterygo-maxillary fissures, and placed beneath the apex of the orbit. It is formed above by the under surface of the body of the sphenoid and by the orbital process of the palate bone. NCIT:C33584 UMLS:C1519450 @@ -608308,14 +608380,14 @@ UBERON:0013454 spheno-maxillary fossa - + - + Wikipedia @@ -608351,7 +608423,7 @@ - + The sphenopetrosal fissure (or sphenopetrosal suture) is the cranial suture between the sphenoid bone and the petrous portion of the temporal bone. It is in the middle cranial fossa. FMA:75038 Wikipedia:Sphenopetrosal_fissure @@ -608362,14 +608434,14 @@ spheno-petrosal fissure http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png - + - + Wikipedia @@ -608397,7 +608469,7 @@ - + The point where the upper temporal line cuts the coronal suture is named the stephanion. FMA:264723 Wikipedia:Stephanion @@ -608406,14 +608478,14 @@ stephanion https://upload.wikimedia.org/wikipedia/commons/a/ae/Gray188-Coronal_suture.png - + - + Wikipedia @@ -608429,7 +608501,7 @@ - + The suprainiac fossa is an elliptic depression on the occiput above the superior nuchal line, or inion. UBERON:0013470 @@ -608438,14 +608510,14 @@ UBERON:0013460 suprainiac fossa - + - + Wikipedia @@ -608501,7 +608573,7 @@ - + The temporal fossa is a shallow depression on the side of the skull bounded by the temporal lines and terminating below the level of the zygomatic arch. FMA:75307 NCIT:C33742 @@ -608513,14 +608585,14 @@ temporal fossa http://upload.wikimedia.org/wikipedia/commons/b/bd/Fossatemporalis.PNG - + - + Wikipedia @@ -608588,7 +608660,7 @@ - + Near the middle of the occipital squama is the external occipital protuberance, and extending lateralward from it on either side is the superior nuchal line, and above this the faintly marked highest nuchal line. It is less pronounced in females. The inion is the highest point of the external occipital protuberance. a projection on the external surface of the squamous part of the occipital bone in the midline. The external occipital protuberance is a bony prominence occuring on the large area ventral to the external sagittal crest. It functions as the attachment site for the funicular part of the nuchal ligament[MURDOCH:734]. FMA:75752 @@ -608600,14 +608672,14 @@ external occipital protuberance https://github.com/obophenotype/uberon/issues/166 - + - + FMA @@ -608998,7 +609070,7 @@ - + An intestinal crypt that is located in the ileum. EMAPA:37839 FMA:269061 @@ -609010,14 +609082,14 @@ crypt of Lieberkuhn of ileum - + - + FMA @@ -609049,7 +609121,7 @@ - + An intestinal crypt that is located in the duodenum. EMAPA:37838 FMA:269063 @@ -609060,14 +609132,14 @@ crypt of Lieberkuhn of duodenum - + - + FMA @@ -609099,7 +609171,7 @@ - + An intestinal crypt that is located in the jejunum. EMAPA:37840 FMA:269065 @@ -609110,14 +609182,14 @@ crypt of Lieberkuhn of jejunum - + - + FMA @@ -609311,7 +609383,7 @@ - + @@ -609337,14 +609409,14 @@ It is considered by some to be a part of the Panniculus adiposus, and not true fascia[WP] superficial cervical fascia - + - + contested Wikipedia @@ -609745,21 +609817,21 @@ - + EMAPA:16662 uberon glossopharyngeal-vagus preganglion complex UBERON:0013499 glossopharyngeal-vagus IX-X preganglion complex - + - + cjm @@ -610595,8 +610667,8 @@ - - + + One of two lateral tracts connecting a uterus to a common median tract separated from the median vagina via ureters which prevent their fusion. Found in marsupials. https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern lateral vagina @@ -610605,24 +610677,24 @@ UBERON:0013523 lateral vaginal canal - + - + - + cjm - + the lateral vaginae serve as transport for the sperm @@ -610658,7 +610730,7 @@ - + @@ -610675,14 +610747,14 @@ UBERON:0013524 median vaginal canal - + - + cjm @@ -610708,7 +610780,7 @@ - + The anatomical space that is enclosed by a stomach. Organ cavity which is bound by the internal surface of the wall of stomach. Examples: There is only one cavity of stomach[FMA:14585]. EMAPA:18395 @@ -610719,14 +610791,14 @@ UBERON:0013525 stomach lumen - + - + FMA @@ -610771,8 +610843,8 @@ - - + + An anatomical cavity that is part of a ear vesicle. EHDAA2:0004121 EMAPA:25363 @@ -610781,11 +610853,11 @@ UBERON:0013526 otocyst lumen - + - + @@ -610798,13 +610870,13 @@ - + EHDAA2 - + EHDAA2 @@ -610993,7 +611065,7 @@ - + A segmentation of the cerebral cortex on the basis of cytoarchitecture as described in Brodmann-1905, Brodmann-1909 and Brodmann-10. Maps for several species were presented. NeuroNames includes only areas in the human and in Old World monkeys. Of the latter, Brodmann studied representatives of several species including guenons (one Cercopithecus mona, one Cercocebus torquatus, and one Cercopithecus otherwise unspecified), which are all closely related African species, and one macaque (Macaca mulatta) an Asian species (Brodmann-1905). The legend to the summary map in Brodmann-1909 ascribes the areas simply to Cercopithecus. Brodmann referenced the areas by name and number. The same area number in humans and monkeys did not necessarily refer to topologically or cytoarchitecturally homologous structures. In NeuroNames the standard term for human areas consists of the English translation of Brodmann's Latin name followed by the number he assigned, e.g., agranular frontal area 6; the standard terms for monkey areas are in the format: area 6 of Brodmann-1909. He mapped a portion of areas limited to the banks of sulci, e.g., area 3 of Brodmann-1909 (Brodmann-1909) onto the adjacent, visible surface. This accounts for the fact that some areas appear larger on his surface map than on maps of other authors, e.g., area 3 of Vogts-1919. (Adapted from NeuroNames). BAMS:VTM BIRNLEX:1731 @@ -611010,14 +611082,14 @@ UBERON:0013529 Brodmann area - + - + FMA Wikipedia @@ -611069,7 +611141,7 @@ - + The retrosplenial region is a brain area and part of the cingulate cortex. It is defined by Brodmann area 26, Brodmann area 29 and the Brodmann area 30. BAMS:RSP BTO:0003977 @@ -611086,14 +611158,14 @@ retrosplenial region - + - + BTO @@ -611249,7 +611321,7 @@ - + The term area 4 of Brodmann-1909 refers to a cytoarchitecturally defined portion of the frontal lobe of the guenon. It is located predominantly in the precentral gyrus. Brodmann-1909 regarded it as topographically and cytoarchitecturally homologous to the human gigantopyramidal area 4 and noted that it occupies a much greater fraction of the frontal lobe in the monkey than in the human. Distinctive features (Brodmann-1905): the cortex is unusually thick; the layers are not distinct; the cells are relatively sparsely distributed; giant pyramidal (Betz) cells are present in the internal pyramidal layer (V); lack of an internal granular layer (IV) such that the boundary between the external pyramidal layer (III) and the internal pyramidal layer (V) is indistinct; lack of a distinct external granular layer (II); a gradual transition from the multiform layer (VI) to the subcortical white matter. B09-4 BIRNLEX:1735 @@ -611273,7 +611345,7 @@ Brodmann (1909) area 4 https://github.com/obophenotype/uberon/issues/515 - + @@ -611286,7 +611358,7 @@ - + https://github.com/obophenotype/uberon/issues/515 @@ -611649,7 +611721,7 @@ - + . B09-9 BIRNLEX:1740 @@ -611672,7 +611744,7 @@ UBERON:0013540 Brodmann (1909) area 9 - + @@ -611685,7 +611757,7 @@ - + https://orcid.org/0000-0003-3308-6245 @@ -612148,7 +612220,7 @@ - + Brodmann Area 14 is one of Brodmann's subdivisions of the cerebral cortex in the brain. It was defined by Brodmann in the guenon monkey. No equivalent structure exists in humans. B09-14 BIRNLEX:1745 @@ -612166,7 +612238,7 @@ UBERON:0013545 Brodmann (1909) area 14 - + @@ -612179,7 +612251,7 @@ - + vmPFC WP @@ -612460,7 +612532,7 @@ - + Brodmann area 19, or BA19, is part of the occipital lobe cortex in the human brain. Along with area 18, it comprises the extrastriate (or peristriate) cortex. In normally-sighted humans, extrastriate cortex is a visual association area, with feature-extracting, shape recognition, attentional, and multimodal integrating functions. This area is also known as peristriate area 19, and it refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex. In the human it is located in parts of the lingual gyrus, the cuneus, the lateral occipital gyrus (H) and the superior occipital gyrus (H) of the occipital lobe where it is bounded approximately by the parieto-occipital sulcus. Cytoarchitecturally it is bounded on one side by the parastriate area 18 which it surrounds. Rostrally it is bounded by the angular area 39 (H) and the occipitotemporal area 37 (H) (Brodmann-1909). B09-19 BIRNLEX:1750 @@ -612484,7 +612556,7 @@ UBERON:0013550 Brodmann (1909) area 19 - + @@ -612497,7 +612569,7 @@ - + WP @@ -613247,7 +613319,7 @@ - + Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]. B09-27 BIRNLEX:1758 @@ -613271,7 +613343,7 @@ UBERON:0013558 Brodmann (1909) area 27 - + @@ -613284,7 +613356,7 @@ - + consider merging many sources treat as synonymous @@ -613386,7 +613458,7 @@ - + . B09-28 BIRNLEX:1759 @@ -613410,7 +613482,7 @@ Brodmann (1909) area 28 http://upload.wikimedia.org/wikipedia/commons/7/76/Brodmann_Cytoarchitectonics_28.png - + @@ -613423,7 +613495,7 @@ - + consider merging many sources treat as synonymous @@ -613849,7 +613921,7 @@ - + Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]. B09-40 BIRNLEX:1773 @@ -613869,7 +613941,7 @@ UBERON:0013573 Brodmann (1909) area 40 - + @@ -613882,7 +613954,7 @@ - + consider merging many sources treat as synonymous @@ -615292,7 +615364,7 @@ - + Ossicle that develops within bands of dense, regular connective tissue (e.g., tendons and ligaments). Sesamoids are generally located proximate to a bony prominence, over which the dense regular connective tissue wraps, and/or a joint or articulation. VSAO:0000137 sesamoid @@ -615301,7 +615373,7 @@ Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage. sesamoid element - + @@ -615314,7 +615386,7 @@ - + VSAO @@ -615480,7 +615552,7 @@ - + An epithelium that is part of a intestinal villus. FMA:63587 intestinal villus epithelium @@ -615490,14 +615562,14 @@ UBERON:0013636 epithelium of intestinal villus - + - + FMA @@ -615815,7 +615887,7 @@ - + The buccal nerve (also called the long buccal nerve) is a nerve in the face. It is a branch of the mandibular nerve (which is itself a branch of the trigeminal nerve) and transmits sensory information from skin over the buccal membrane (in general, the cheek) and from the second and third molar teeth. BAMS:bucn FMA:53066 @@ -615829,14 +615901,14 @@ UBERON:0013646 buccal nerve - + - + FMA @@ -615886,7 +615958,7 @@ - + A nerve that innervates the lateral pterygoid muscle. The nerve to the Pterygoideus externus frequently arises in conjunction with the buccinator nerve, but it may be given off separately from the anterior division of the mandibular nerve. It enters the deep surface of the muscle. FMA:53107 @@ -615900,14 +615972,14 @@ UBERON:0013647 lateral pterygoid nerve - + - + FMA @@ -615963,7 +616035,7 @@ - + The masseteric artery is small and passes laterally through the mandibular notch to the deep surface of the masseter muscle, which it supplies. It anastomoses with the masseteric branches of the external maxillary artery and with the transverse facial artery. FMA:49739 @@ -615977,14 +616049,14 @@ masseteric artery - + - + FMA @@ -616075,7 +616147,7 @@ - + @@ -616090,14 +616162,14 @@ UBERON:0013653 velar skeleton - + - + in hagfishes it is difficult to separate neurocranium from visceral skeleton @@ -616256,8 +616328,8 @@ - - + + A bulbous ridge of highly vascularized tissue that runs along the center of the hard palate, expanding cranially to form two large lobes that terminate under the tip of the rostral palate, with another enlarged node at the caudal terminus. palatal organ palatal corpus cavernosum maxillaris @@ -616266,24 +616338,24 @@ UBERON:0013658 corpus cavernosum maxillaris - + - + - + PMID:23450839 - + PMID:23450839 @@ -617070,7 +617142,7 @@ - + @@ -617105,14 +617177,14 @@ buttock - + - + FMA @@ -618058,8 +618130,8 @@ - - + + @@ -618096,24 +618168,24 @@ UBERON:0013715 ilio-marsupialis muscle - + - + - + DOI:10.1046/j.1469-7580.2002.00087.x - + PMC1570914 @@ -618613,7 +618685,7 @@ - + @@ -618640,14 +618712,14 @@ UBERON:0013731 basilar papilla - + - + MA-abduced @@ -618686,21 +618758,21 @@ - + A tube leading from the external naris to the nasal cavity. AAO:0000984 uberon UBERON:0013732 vestibule of nasal cavity - + - + AAO @@ -618758,7 +618830,7 @@ - + Nucleus of the medial ventral tegmental area, originally identified in the rat but also in cat, monkey and human, comprising an average of 7% volume of the VTA across the different species, with the largest being present in the cat. Brain Info does not list the linear nuclei as part of the ventral tegmental area but as a co-area of the midbrain tegmentum. Am assuming the rostral linear nucleus of the raphe is synonymous, but needs further review. (NIF) BAMS:LR @@ -618775,7 +618847,7 @@ UBERON:0013734 rostral linear nucleus - + @@ -618788,7 +618860,7 @@ - + NIFSTD @@ -618854,7 +618926,7 @@ - + PN DHBA:12265 FMA:77497 @@ -618864,7 +618936,7 @@ UBERON:0013737 paranigral nucleus - + @@ -618877,7 +618949,7 @@ - + PMID:21653852 @@ -618894,7 +618966,7 @@ - + Nucleus identified in the medial ventral tegmental area that borders the red nucleus and superior cerebellar peduncle dorsally, the medial lemniscus laterally, the subtantia nigra pars compacta and paranigral nucleus ventrally and the rostral linear nucleus and interfascicular nucleus medially. Generally, the largest nucleus in the ventral tegmental area, occupying an average of 50% of the total volume as measured in rat, cat, monkey and human. PBP BAMS:PBP @@ -618908,14 +618980,14 @@ UBERON:0013738 parabrachial pigmental nucleus - + - + NIF PMID:21653852 @@ -619141,7 +619213,7 @@ - + A zone of the adrenal cortex located between the zona glomerulosa and the zona fasciculata. zona intermedia zona intermedia of suprarenal gland @@ -619151,7 +619223,7 @@ currently postulated to be a site of initiation of adrenocyte proliferation and differentiation and a zone containing the adrenal cortical stem cells. Present in some rat species. zona intermedia of adrenal gland - + @@ -619164,7 +619236,7 @@ - + cjm @@ -619180,7 +619252,7 @@ - + Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton. Median ventral cartilage or bony element at the ventral point of a branchial arch, behind the tongue[http://www.fishbase.org/Glossary/Glossary.php?q=basibranchial&sc=is]. basibranchial @@ -619191,14 +619263,14 @@ UBERON:0013746 basibranchial element - + - + ZFA @@ -619279,7 +619351,7 @@ - + A metaphysis that is part of a ulna. FMA:33767 metaphysis of ulna @@ -619288,14 +619360,14 @@ ulnar metaphysis - + - + FMA @@ -620528,7 +620600,7 @@ - + A zone of skin that is part of a palmar part of manus. FMA:38301 SCTID:181544004 @@ -620539,14 +620611,14 @@ skin of palm of manus - + - + FMA @@ -620737,7 +620809,7 @@ - + Most superficial of 3 cytoarchitecturally defined layers of the piriform cortex, characterized by few neuronal cell bodies. It has been divided into a superficial part and a deep part. NLXANAT:091003 layer 1 of piriform cortex @@ -620753,14 +620825,14 @@ UBERON:0014277 piriform cortex layer 1 - + - + NIFSTD @@ -620830,7 +620902,7 @@ - + @@ -620852,14 +620924,14 @@ UBERON:0014280 piriform cortex layer 2 - + - + NIFSTD @@ -620917,7 +620989,7 @@ - + @@ -620934,14 +621006,14 @@ UBERON:0014283 piriform cortex layer 3 - + - + NIFSTD @@ -620975,7 +621047,7 @@ - + An elongated nucleus consisting largely of multipolar spiny cells lying deep to the piriform cortex. According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, (Ed.), Academic Press, San Diego), it is part of the claustrum. @@ -620995,14 +621067,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014284 endopiriform nucleus - + - + NIFSTD @@ -621055,21 +621127,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:100307 dorsal cap of kooy uberon UBERON:0014286 dorsal cap of Kooy - + - + NIFSTD @@ -621085,7 +621157,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Regional part of the inferior olivary complex. BAMS:IOma NLXANAT:100309 @@ -621096,14 +621168,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014287 medial accessory olive - + - + NIFSTD @@ -621151,7 +621223,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of cortical areas related by direct or indirect connectivity to the striate area 17 and functionally involved primarily in vision. They include the parastriate area 18, the peristriate area 19 and adjacent areas in the parietal lobe and temporal lobe (Adapted from BrainInfo and Zilles-1990). BTO:0004704 @@ -621168,7 +621240,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014370 extrastriate cortex - + @@ -621181,7 +621253,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + WP @@ -621243,7 +621315,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Embryonic structure that gives rise to the telencephalon. EHDAA2:0004424 EMAPA:36024 @@ -621255,14 +621327,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( paired anteriolateral division of the embryonic prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived[MP] future telencephalon - + - + definitional @@ -621332,7 +621404,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Embryoid bodies (EBs) are three-dimensional aggregates of pluripotent stem cells. in future this class may be ceded to another ontology if it falls outside the scope of in-vivo, non-pathological biology Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors[BTO]. @@ -621346,7 +621418,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( embryoid body - + @@ -621359,7 +621431,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Wikipedia @@ -622273,7 +622345,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A short projection from the base of the manubrium of the malleus, attached firmly to the drum membrane. FMA:52770 MA:0002994 @@ -622289,7 +622361,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014397 lateral process of malleus - + @@ -622302,7 +622374,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -622752,8 +622824,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -622771,25 +622843,25 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014410 fibularis quartus - + - + - + may also originate from the longus PMID:14653594 - + PMID:14653594 @@ -623049,7 +623121,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -623072,14 +623144,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014440 ischiopubic ramus - + - + FMA @@ -623391,7 +623463,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A neural nucleus of the pretectal area (between dorsal thalamus and optic tectum) that receives afferents primarily from the retina and the optic tectum and are involved in modulating motor behavior in response to visual input. @@ -623418,14 +623490,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( pretectal nucleus - + - + MP @@ -623863,7 +623935,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + One of two bilaterally symmetrical holes (fenestrae) in the temporal bone. @@ -623872,14 +623944,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014459 temporal fenestra - + - + not present in earliest amniotes Wikipedia @@ -624337,7 +624409,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Fissure between cerebellar lobules I and II. compare with precentral sulcus BAMS:pce @@ -624359,7 +624431,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014473 precentral fissure of cerebellum - + @@ -624372,7 +624444,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -624639,8 +624711,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -624662,24 +624734,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014479 elephant trunk - + - + - + Wikipedia - + Wikipedia @@ -625978,7 +626050,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ADMG BAMS:MGad BIRNLEX:1600 @@ -625991,14 +626063,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014521 anterodorsal nucleus of medial geniculate body - + - + NIFSTD @@ -626235,7 +626307,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Portion of internal capsule lying between the globus pallidus and the thalamus (Nolte, The Human Brain, 6th ed., 2009, pg 409, modified by MM). BAMS:pic DHBA:10584 @@ -626253,7 +626325,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014527 posterior limb of internal capsule - + @@ -626266,7 +626338,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -626378,7 +626450,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The lenticular fasciculus is a tract connecting the globus pallidus to the Thalamic fasciculus. The thalamic fasciculus (composed of the lenticular fasciculus and ansa lenticularis) runs into the Thalamus. It connects the globus pallidus to the thalamus. FMA appears to divide this into diencephalon and telencephalon parts BAMS:lenf_(H2) @@ -626407,7 +626479,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014529 lenticular fasciculus - + @@ -626420,7 +626492,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -626795,8 +626867,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division. BAMS:PAC MESH:D066277 @@ -626808,24 +626880,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014537 periamygdaloid cortex - + - + - + NIFSTD - + NIFSTD @@ -627364,7 +627436,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + CA1 part of stratum pyramidale hippocampi. BIRNLEX:4110 DMBA:16133 @@ -627386,14 +627458,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014548 pyramidal layer of CA1 - + - + NN-text @@ -627468,7 +627540,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Part of pyramidal cell layer in area CA2, lying superficial to the CA2 stratum oriens, and deep to the stratum radiatum of CA2, continuous with the pyramidal cell layers of CA1 and CA3. BIRNLEX:4111 EMAPA:36480 @@ -627485,14 +627557,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014549 pyramidal layer of CA2 - + - + NN-text @@ -627549,7 +627621,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A layer of hippocampal field that is part of a hippocampus pyramidal layer and is part of a CA3 field of hippocampus. BIRNLEX:4112 EMAPA:36448 @@ -627566,14 +627638,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014550 pyramidal layer of CA3 - + - + NN-text @@ -628276,7 +628348,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations. According to Hayakawa and Zuo (1983), the TDD cannot be clearly identified in the tree shrew or in human NLXANAT:20090407 @@ -628286,14 +628358,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014568 dorsal tegmental nucleus pars dorsalis - + - + NIFSTD @@ -628321,7 +628393,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains. According to Hayakawa and Zuo (1983), the TDV cannot be clearly identified in the tree shrew or in human NLXANAT:20090408 @@ -628333,14 +628405,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014569 dorsal tegmental nucleus pars ventralis - + - + NIFSTD @@ -628728,7 +628800,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + TMd BAMS:TMd BIRNLEX:1290 @@ -628740,7 +628812,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014593 tuberomammillary nucleus dorsal part - + @@ -628753,7 +628825,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -628784,7 +628856,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + TMv BAMS:TMv BIRNLEX:1294 @@ -628794,7 +628866,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014594 tuberomammillary nucleus ventral part - + @@ -628807,7 +628879,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -629488,7 +629560,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia). BAMS:FS BAMS:FStr @@ -629504,7 +629576,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014605 fundus striati - + @@ -629517,7 +629589,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ABA @@ -630776,7 +630848,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:2676 FMA:77038 @@ -630790,14 +630862,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014630 ventral gray commissure of spinal cord - + - + FMA @@ -630844,7 +630916,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The part of the gray commissure in the spinal central gray posterior to the central canal of the spinal cord. It is identified by Nissl stain and found in the human ( Crosby-1962 ) and the rat ( Swanson-2004 ). BIRNLEX:2677 @@ -630861,14 +630933,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014631 dorsal gray commissure of spinal cord - + - + FMA @@ -632811,7 +632883,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:49695 SCTID:276151008 @@ -632820,14 +632892,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( inferior alveolar artery - + - + FMA @@ -632843,7 +632915,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The posterior auricular artery is a small artery and arises from the external carotid artery, above the Digastric muscle and Stylohyoid muscle, opposite the apex of the styloid process. It ascends posteriorly beneath the parotid gland, along the styloid process of the temporal bone, between the cartilage of the ear and the mastoid process of the temporal bone along the lateral side of the head. The posterior auricular artery supplies blood to the scalp posterior to the auricle and to the auricle itself. FMA:49624 @@ -632854,14 +632926,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( posterior auricular artery - + - + FMA @@ -632893,7 +632965,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The deep auricular artery often arises in common with the anterior tympanic artery. It ascends in the substance of the parotid gland, behind the temporomandibular articulation, pierces the cartilaginous or bony wall of the external acoustic meatus, and supplies its cuticular lining and the outer surface of the tympanic membrane. It gives a branch to the temporomandibular joint. FMA:49689 @@ -632904,14 +632976,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( deep auricular artery - + - + FMA @@ -632927,7 +632999,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The anterior choroidal artery originates from the internal carotid artery, though it also rarely arises from the middle cerebral artery. @@ -632941,14 +633013,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( anterior choroidal artery - + - + FMA @@ -632976,8 +633048,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + FMA:50657 NCIT:C33352 SCTID:369342007 @@ -632985,24 +633057,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014697 posterior choroidal artery - + - + - + FMA - + FMA @@ -633127,7 +633199,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An epithelium that is part of a frontonasal prominence. EHDAA2:0004108 EMAPA:32918 @@ -633135,7 +633207,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014702 frontonasal process epithelium - + @@ -633148,7 +633220,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 @@ -633208,7 +633280,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An anatomical space that is enclosed by a pleuroperitoneal canal. EHDAA2:0004736 EMAPA:25034 @@ -633217,14 +633289,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014704 pleuroperitoneal canal lumen - + - + EHDAA2 @@ -633257,7 +633329,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An epithelium that is part of a median lingual swelling. EHDAA2:0001085 EMAPA:17188 @@ -633266,7 +633338,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014705 median lingual swelling epithelium - + @@ -633279,7 +633351,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 @@ -633301,7 +633373,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0001147 EMAPA:17646 metanephros primitive collecting ducts @@ -633310,7 +633382,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014706 primitive renal collecting duct system - + @@ -633323,7 +633395,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 @@ -633486,20 +633558,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An epithelium that is part of a carapacial ridge. uberon UBERON:0014712 carapacial ridge ectoderm - + - + cjm @@ -633931,7 +634003,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -633947,14 +634019,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Examples: compound eye; Johnston's organ. compound cell cluster organ - + - + 2 @@ -634088,7 +634160,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Part of the allocortex defined on the basis of cytoarchitecture. The other two are archicortex and periallocortex. It consists of very thin, primitive cortex with few clearly defined layers. It is distinguished ontogenetically by the fact that it does not develop through a cortical plate. It includes the olfactory bulb, accessory olfactory bulb, olfactory tubercle, septum, prepyriform area and periamygdalar area ( Stephan-1975 ). (adapted from Brain Info). Paleocortex is present in the parahippocampal gyrus,[1] olfactory bulb, accessory olfactory bulb, olfactory tubercle, piriform cortex, periamygdalar area,[2] anterior olfactory nucleus, anterior perforated substance, and prepyriform area BAMS:Paleocortex @@ -634105,7 +634177,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014735 paleocortex - + @@ -634118,7 +634190,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -634799,7 +634871,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Brainstem tract formed by the central processes of first-order, trigeminal ganglion neurons that extends from the caudal medulla to the midpons. This tract conveys nociceptive and thermal information from the face to second-order neurons in the spinal nucleus of the trigeminal complex. BAMS:sp5 BTO:0003701 @@ -634825,14 +634897,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014761 spinal trigeminal tract - + - + BTO @@ -635090,8 +635162,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -635120,24 +635192,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Classification notes: May be considered an external sphincter[PMID:8224664] crus of diaphragm - + - + - + PMID:23586979 - + PMID:23586979 @@ -635446,7 +635518,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The lateral palpebral arteries are small arteries which supply the eyelid. @@ -635460,14 +635532,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( lateral palpebral artery - + - + FMA @@ -635501,7 +635573,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The medial palpebral arteries (internal palpebral arteries) are arteries of the head. They are two in number, superior and inferior, arise from the ophthalmic, opposite the pulley of the Obliquus superior. FMA:50012 @@ -635518,14 +635590,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( medial palpebral artery - + - + FMA @@ -635830,9 +635902,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - - + + + EHDAA2:0000113 EMAPA:28547 uberon @@ -635841,15 +635913,15 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( remnant of allantois in embryo allantois of embryonic urinary system - + - + - + @@ -635862,19 +635934,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -636007,9 +636079,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - - + + + Extraembryonic part of the vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta. VHOG:0000015 extraembryonic umbilical vein @@ -636017,34 +636089,34 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014786 extraembryonic umbilical vein - + - + - + - + EHDAA2 - + EHDAA2 - + EHDAA2 @@ -636433,20 +636505,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Any muscle organ that is part of a pectoral appendage (forelimb or pectoral fin). uberon UBERON:0014794 pectoral appendage muscle - + - + prolog @@ -636472,20 +636544,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Any muscle organ that is part of a pelvic appendage (hindlimb or pelvic fin). uberon UBERON:0014795 pelvic appendage muscle - + - + prolog @@ -636616,32 +636688,32 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A jaw muscle that arises from trunk somites and is innervated by spinal nerves. uberon UBERON:0014797 hypobranchial group muscle - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -637043,31 +637115,31 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A dorsal muscle of lower tetrapods. uberon UBERON:0014842 puboischiofemoralis muscle - + - + - + ISBN:0073040584 - + ISBN:0073040584 @@ -637103,8 +637175,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -637129,24 +637201,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014847 vastus intermedius - + - + - + ISBN:0073040584 - + dbpedia @@ -637210,7 +637282,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:46900 SCTID:245175008 @@ -637225,7 +637297,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( tendon of quadriceps femoris - + @@ -637238,7 +637310,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -637555,8 +637627,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Leaflet of mitral valve which is attached to the posterior head of the lateral papillary muscle of left ventricle through the chorda tendinea of the left ventricle. FMA:7243 SCTID:244355000 @@ -637572,11 +637644,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0014855 posterior leaflet of mitral valve - + - + @@ -637589,13 +637661,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA - + FMA @@ -639169,21 +639241,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + In those cases in which the interilial region is broadly expanded and the pubis is extremely reduced, the anterior margin of the ischium forms an expanded area. AAO:0000881 uberon UBERON:0014898 lamina terminalis of ischium - + - + AAO @@ -639375,7 +639447,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites. Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these don't have venous or arterial markers[ZFA:0001285, ZFIN:ZDB-PUB-030908-4]. EFO:0003664 @@ -639393,7 +639465,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( intersomitic vessel - + @@ -639406,7 +639478,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ZFA @@ -639664,7 +639736,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The bend in the facial nerve at the lateral end of the internal acoustic meatus. first genu DHBA:12738 @@ -639688,7 +639760,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( genu of facial nerve - + @@ -639701,7 +639773,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -640231,20 +640303,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + these layers primarily refer to the mammalian future neocortex uberon UBERON:0014950 layer of developing cerebral cortex - + - + EMAPA @@ -643531,7 +643603,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -643544,7 +643616,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015062 bone condensation - + @@ -643557,7 +643629,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + AEO @@ -643584,21 +643656,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An endochondral element that is part of a autopod region. uberon UBERON:0015063 autopod endochondral element - + - + cjm @@ -643700,21 +643772,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A distal mesopodial endochondral element that is part of a forelimb. uberon distal carpal UBERON:0015068 distal carpal endochondral element - + - + skeleton pattern @@ -644532,21 +644604,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A distal mesopodial endochondral element that is part of a hindlimb. uberon distal tarsal UBERON:0015099 distal tarsal endochondral element - + - + skeleton pattern @@ -645138,7 +645210,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -645159,7 +645231,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] lamina terminalis of cerebral hemisphere - + @@ -645172,7 +645244,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -645418,7 +645490,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Internodal tract which consists of the atrial and atrial septal branches. FMA:9480 @@ -645428,7 +645500,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015125 anterior internodal tract - + @@ -645441,7 +645513,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -645553,7 +645625,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + consider merging into myocardial compact layer FMA:83105 perimysial connective tissue of subepicardium @@ -645562,7 +645634,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015128 subepicardial layer of epicardium - + @@ -645575,7 +645647,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -645850,7 +645922,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -645866,14 +645938,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( infundibulum of gallbladder - + - + FMA @@ -646236,7 +646308,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A gland that is typically found in or near the orbital region, in or around either the medial or lateral canthi, and is typically associated with secretions onto the eyeball or associated ducts. Includes the Harderian, nictitans and lacrimal glands. the only orbital gland found in anuran amphibians is either the Harderian or the lacrimal; if it is a lacrimal, then a progressive lateral migration of the lacrimal glands must occur through the amniotes[PMID:7559104] the only orbital gland found in anuran amphibians is the Harderian[PMID:8843648] @@ -646246,14 +646318,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015152 gland of ocular region - + - + inferred @@ -646331,7 +646403,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An anatomical space that is enclosed by a conjunctiva. FMA:59083 SCTID:280957009 @@ -646343,14 +646415,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015155 conjunctival space - + - + FMA @@ -646411,7 +646483,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The middle temporal artery occasionally gives off a zygomatico-orbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit. This branch, which may arise directly from the superficial temporal artery, supplies the Orbicularis oculi, and anastomoses with the lacrimal and palpebral branches of the ophthalmic artery. FMA:49663 @@ -646424,14 +646496,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( zygomatico-orbital artery - + - + FMA @@ -646459,7 +646531,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -646472,14 +646544,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The blood supply to the (Harderian) gland has been reported in greatest detail in the sparrow Passer domesticus (Slonaker, 1918), where it is derived through the ophthalmotemporal branch of the external ophthalmic artery http://www.ncbi.nlm.nih.gov/pubmed/7559104 ophthalmotemporal branch of external ophthalmic artery - + - + PMID:7559104 @@ -646567,7 +646639,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The inferior branch of the oculomotor nerve or the inferior division, the larger, divides into three branches. One passes beneath the optic nerve to the medial rectus. Another, to the inferior rectus. The third and longest runs forward between the inferior recti and lateralis to the inferior oblique. From the last a short thick branch is given off to the lower part of the ciliary ganglion, and forms its short root. All these branches enter the muscles on their ocular surfaces, with the exception of the nerve to the inferior oblique, which enters the muscle at its posterior border. AAO:0010632 FMA:52573 @@ -646586,14 +646658,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015161 inferior branch of oculomotor nerve - + - + AAO Wikipedia @@ -646934,7 +647006,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -646962,7 +647034,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uterine spiral artery - + @@ -646975,7 +647047,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BTO @@ -647139,7 +647211,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -647170,14 +647242,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( helicine artery of penis - + - + FMA @@ -647730,7 +647802,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:18593 FMA:53146 SCTID:310212002 @@ -647738,14 +647810,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015216 nasal meatus - + - + EMAPA @@ -648061,7 +648133,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The caudal, pulsatile region of the dorsal vessel of the arthropod circulatory system. FBbt has two terms that are both narrower than this, for adult heart, and embryonic/larval heart. FBbt:00003154 @@ -648072,14 +648144,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015230 dorsal vessel heart - + - + FBbt @@ -648167,7 +648239,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -648181,7 +648253,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015232 nematode pharynx - + @@ -648194,7 +648266,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + WBbt @@ -648283,7 +648355,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A cluster in the epithalamus that consists of the pineal body and any associated structures, such as the parapineal gland or the parietal organ. The complex is poorly developed in mammals. TAO:0001359 @@ -648292,14 +648364,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015238 pineal complex - + - + ZFA @@ -648315,7 +648387,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry[ZFA:0001360, ZFIN:ZDB-PUB-030206-1]. In lampreys and apparently in some fossil fish, the parapineal body and the pineal body (epiphysis) are a bilateral pair of structures rather than being located in series, one in front of the other. A pair of visual structures may have been the ancestral condition of this pineal complex (Weichert, 1970, p.622). The parapineal organs of lampreys, tadpoles, and lizards possess cells similar to rods and cones. Frogs possess a brow spot or frontal organ where ancestral pineal eye might have been (Weichert, 1970, p.622) @@ -648326,7 +648398,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015241 parapineal organ - + @@ -648339,7 +648411,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ZFA @@ -648365,7 +648437,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -648388,7 +648460,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015243 lower part of vagina - + @@ -648401,7 +648473,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA @@ -648441,7 +648513,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -648459,14 +648531,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015244 accessory olfactory bulb granule cell layer - + - + MA @@ -648494,14 +648566,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + A spatially segregated cluster of sensory cells in the nasal cavity. EMAPA:35764 MA:0001327 @@ -648509,24 +648581,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015245 septal olfactory organ - + - + - + NCBIBook:NBK55971 - + MA @@ -648606,7 +648678,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -648630,14 +648702,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015247 bifurcation of trachea - + - + MA @@ -648703,8 +648775,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + EMAPA:37610 MA:0003019 uberon @@ -648712,24 +648784,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015250 inferior olivary commissure - + - + - + MA - + MA-modified @@ -648888,7 +648960,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A basement membrane of epithelium that is part of a respiratory system. EMAPA:37570 MA:0001815 @@ -648896,14 +648968,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015329 respiratory system basement membrane - + - + MA @@ -649094,8 +649166,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The segment of either hepatic duct located in the hilum of the liver. EMAPA:37599 MA:0002665 @@ -649106,11 +649178,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015423 hilar portion of hepatic duct - + - + @@ -649123,13 +649195,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MA - + located in or on the hilum, but not part of the liver @@ -649210,7 +649282,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -649227,14 +649299,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015432 accessory olfactory bulb mitral cell layer - + - + MA @@ -649250,7 +649322,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A thin layer of fibrous tissue capable of stretching and contracting. It is part of the tunica media of the blood vessels. in FMA this is classified as an acellular membrane, which is inconsistent with our classification as a tissue layer. Requires further investigation EMAPA:36302 @@ -649264,7 +649336,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015433 blood vessel external elastic membrane - + @@ -649277,7 +649349,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MA @@ -649803,7 +649875,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The hepatic artery proper (also proper hepatic artery), arises from the common hepatic artery and runs alongside the portal vein and the common bile duct to form the portal triad. The hepatic artery proper gives off a small supraduodenal artery to the duodenal bulb. Then the right gastric artery comes off and runs to the left along the lesser curvature of the stomach to meet the left gastric artery, which is a branch of the celiac trunk. It subsequently gives off the cystic artery, which feeds the gallbladder, before bifurcating into the right and left hepatic arteries. Of note, the right and left hepatic arteries may demonstrate variant anatomy. A replaced right hepatic artery may arise from the superior mesenteric artery (SMA) and a replaced left hepatic artery may arise from the left gastric artery. EMAPA:37217 @@ -649818,7 +649890,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( proper hepatic artery - + @@ -649831,7 +649903,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -649875,7 +649947,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -649895,14 +649967,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( left hepatic artery - + - + FMA @@ -649954,7 +650026,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -649974,14 +650046,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( right hepatic artery - + - + FMA @@ -650121,7 +650193,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The sural nerve (short saphenous nerve), formed by the junction of the medial sural cutaneous with the peroneal anastomotic branch of the lateral sural cutaneous nerve, passes downward near the lateral margin of the tendo calcaneus, lying close to the small saphenous vein, to the interval between the lateral malleolus and the calcaneus. It runs forward below the lateral malleolus, and is continued as the lateral dorsal cutaneous nerve along the lateral side of the foot and little toe (via a dorsal digital nerve), communicating on the dorsum of the foot with the intermediate dorsal cutaneous nerve, a branch of the superficial peroneal. In the leg, its branches communicate with those of the posterior femoral cutaneous. sural EMAPA:37757 @@ -650137,14 +650209,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015488 sural nerve - + - + FMA @@ -651313,8 +651385,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed). DHBA:10304 DMBA:16147 @@ -651335,11 +651407,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015793 induseum griseum - + - + @@ -651352,13 +651424,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MA - + FMA @@ -651825,7 +651897,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A lamina propria that is part of a duodenum. EMAPA:27255 @@ -651839,14 +651911,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( duodenum lamina propria - + - + FMA @@ -652395,20 +652467,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A dental pulp that is part of a narwhal tusk. uberon UBERON:0015853 dental pulp of median incisor tusk - + - + DOI:10.1002/ar.22886 @@ -653441,7 +653513,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:61082 NCIT:C32420 SCTID:362545007 @@ -653451,14 +653523,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015885 cymba conchae of pinna - + - + FMA @@ -653474,7 +653546,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The part of the nail plate that extends into the dermis (nail matrix). FMA:60128 NCIT:C33495 @@ -653485,14 +653557,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0015886 root of nail - + - + FMA @@ -653824,7 +653896,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A lymph node that is medial to the gluteus superficialis m., caudal to gluteus medius m. and sciatic nerve lymph node. MA:0002884 @@ -653832,7 +653904,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016374 sciatic lymph node - + @@ -653845,7 +653917,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + PMID:16624319 @@ -654750,7 +654822,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The circumference of the base of the glans forms a rounded projecting border, the corona of the glans penis, overhanging a deep retroglandular sulcus, behind which is the neck of the penis. FMA:19627 SCTID:362274002 @@ -654763,14 +654835,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( corona of glans penis - + - + FMA @@ -654799,7 +654871,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:19649 glans penile base uberon @@ -654807,14 +654879,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( base of glans penis - + - + FMA @@ -654882,7 +654954,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:24003 central part of body of vertebra uberon @@ -654890,14 +654962,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( central part of body of bony vertebral centrum - + - + FMA @@ -654943,7 +655015,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Subdivision of thorax which is anterior to the plane of the posterior boundary of the middle mediastinum. FMA:24816 SCTID:182331006 @@ -654955,14 +655027,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( anterior chest - + - + FMA @@ -655037,21 +655109,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:29741 bony part of arch of vertebra uberon UBERON:0016419 bony part of vertebral arch - + - + FMA @@ -655198,7 +655270,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The palmar branch of the median nerve is a branch of the median nerve which arises at the lower part of the forearm and innervates skin of proximal central palm and thenar eminence. does not pass through the carpal tunnel FMA:44836 @@ -655213,14 +655285,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( palmar branch of median nerve - + - + FMA @@ -655859,7 +655931,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The midline prominence of the nose, extending from the nasal root to the tip. FMA:59517 SCTID:368114008 @@ -655870,14 +655942,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( dorsum of nose - + - + FMA @@ -655905,8 +655977,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + On the pinna, a curved prominence of cartilage, parallel with and in front of the helix, is called the antihelix, also known as the anthelix; this divides above into two crura, the crura antihelicis, between which is a triangular depression, the fossa triangularis. FMA:60995 NCIT:C32120 @@ -655922,24 +655994,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( antihelix - + - + - + FMA - + http://php.med.unsw.edu.au @@ -655979,8 +656051,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The antitragus is a feature of human ear anatomy. It is a small tubercle that points anteriorly. It is separated from the tragus by the intertragic notch. FMA:61001 NCIT:C32121 @@ -655993,24 +656065,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( antitragus - + - + - + FMA - + http://php.med.unsw.edu.au @@ -656398,7 +656470,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A soft, thin film of food debris, mucin, and dead epithelial cells deposited on the teeth, providing the medium for the growth of various bacteria. The main inorganic components are calcium and phosphorus, with small amounts of magnesium, potassium, and sodium; the organic matrix consists of polysaccharides, proteins, carbohydrates, lipids, and other components. Plaque plays an important etiologic role in the development of dental caries and periodontal and gingival diseases and provides the base for the development of materia alba; calcified plaque forms dental calculus. BTO:0000338 MESH:D003773 @@ -656409,14 +656481,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016482 dental plaque - + - + BTO @@ -656626,7 +656698,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Skeletal element that functionally replaces the notochord[VSAP,modified]. Skeletal element that surrounds the notochord.[VSAO] the main cylindrical portion of the vertebra ventral to the vertebral canal @@ -656638,7 +656710,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016491 vertebral centrum element - + @@ -656651,7 +656723,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + VSAO @@ -656811,7 +656883,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -656825,7 +656897,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016496 tendon of palmaris longus - + @@ -656838,7 +656910,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -656891,7 +656963,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -656912,14 +656984,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016498 intestinal-cloacal junction - + - + ZFA-modified @@ -657004,7 +657076,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A muscularis mucosa that is part of a fundus of urinary bladder. EMAPA:28625 @@ -657013,14 +657085,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( muscularis mucosa of fundus of urinary bladder - + - + EMAPA @@ -657046,8 +657118,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A muscularis mucosa that is part of a fundus of stomach. EMAPA:27165 FMA:17278 @@ -657055,24 +657127,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016501 muscularis mucosae of fundus of stomach - + - + - + FMA - + FMA @@ -657133,7 +657205,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -657149,7 +657221,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016504 umbilical ring - + @@ -657162,7 +657234,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA @@ -657672,7 +657744,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A muscularis mucosa that is part of a jejunum. EMAPA:27121 @@ -657682,14 +657754,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( muscularis mucosae of jejunum - + - + FMA @@ -658573,18 +658645,18 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + EHDAA2:0000566 uberon UBERON:0016547 lower foregut region endoderm - + - + @@ -658597,13 +658669,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 - + EHDAA2 @@ -658981,8 +659053,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + An acellular membrane in the vestibular labyrinth that is composed of the otoconial layer, gelatinous layer, and a subcupular meshwork. FMA:75570 otoconial-statoconial membrane @@ -658992,11 +659064,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/132/ statoconial membrane - + - + @@ -659009,13 +659081,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MA-abduced - + Wikipedia @@ -659038,13 +659110,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:75588 uberon UBERON:0016568 gelatinous layer of statoconial membrane - + @@ -659057,7 +659129,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -659553,7 +659625,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:68868 neuronames:1700 rexed lamina VII @@ -659566,7 +659638,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016578 lamina VII of gray matter of spinal cord - + @@ -659579,7 +659651,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + https://github.com/obophenotype/uberon/issues/1277 @@ -659634,7 +659706,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:68869 neuronames:1701 rexed lamina VIII @@ -659647,7 +659719,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016579 lamina VIII of gray matter of spinal cord - + @@ -659660,7 +659732,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + https://github.com/obophenotype/uberon/issues/1277 @@ -660250,7 +660322,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:18306 isthmus tubae uterinae @@ -660262,7 +660334,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( isthmus of fallopian tube - + @@ -660275,7 +660347,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -660311,7 +660383,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The parvocellular reticular nucleus is part of the brain located dorsolateral to the nucleus reticularis pontis caudalis. The dorsal portion of the reticular nucleus has been shown to innervate the mesencephalic trigeminal nucleus and its surrounding area. Also, it projects to the facial nucleus, hypoglossal nucleus and parabrachial nucleus along with parts of the caudal parvocellular reticular formation. This nucleus is also involved in expiration with a part of the gigantocellular nucleus. DHBA:12618 FMA:72575 @@ -660333,7 +660405,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016633 parvocellular reticular nucleus - + @@ -660346,7 +660418,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -660859,7 +660931,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:72580 neuronames:734 paramedian group (medullary reticular formation) @@ -660872,7 +660944,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016826 paramedian medullary reticular complex - + @@ -660885,7 +660957,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -661018,7 +661090,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The term paratrigeminal nucleus refers to a group of cells located lateral to the spinal trigeminal tract of the medulla and medial to the spinocerebellar tracts at the level of the spinal trigeminal nucleus. The cells, identified by Nissl stain, are partially embedded in the adjacent tracts; their distribution varies by species. The paratrigeminal nucleus may represent an extension of the lateral cervical nucleus into the medulla ( Swanson-2004 ). It is found in the human ( Carpenter-1983 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). In the functional model of central nervous system organization it is classified as part of the subcortical somatosensory system ( Swanson-2004 ). BAMS:PAT DHBA:12656 @@ -661032,7 +661104,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016832 paratrigeminal nucleus - + @@ -661045,7 +661117,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -661086,7 +661158,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -661105,14 +661177,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016843 lateral nucleus of trapezoid body - + - + to be verified @@ -662292,7 +662364,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The joint that is formed by the union of the humerus, the scapula (or shoulder blade), and the clavicle (or collarbone). Commonly thought of as a single joint, the shoulder is actually made up of two separate joints - the glenohumeral and acromioclavicular joints. MESH:D012785 SCTID:361835002 @@ -662301,14 +662373,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016884 shoulder joint - + - + definitional @@ -662391,7 +662463,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -662414,7 +662486,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016887 entire extraembryonic component - + @@ -662427,7 +662499,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + AEO @@ -662476,7 +662548,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:15417 SCTID:304373004 intrahepatic part of portal vein @@ -662484,14 +662556,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016890 intrahepatic branch of portal vein - + - + FMA @@ -662604,7 +662676,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -662621,14 +662693,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016912 frenulum of upper lip - + - + FMA @@ -662672,7 +662744,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -662691,14 +662763,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016913 frenulum of lower lip - + - + FMA @@ -662734,7 +662806,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:62921 NCIT:C32917 UMLS:C1167355 @@ -662744,7 +662816,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016914 lamina lucida - + @@ -662757,7 +662829,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -662905,7 +662977,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:13082 descending aortic arch descending limb of arch of aorta @@ -662914,14 +662986,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016920 descending trunk of arch of aorta - + - + FMA @@ -662949,7 +663021,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Area of aorta proximal to the ductus arteriosus. FMA:3774 SCTID:197773005 @@ -662958,14 +663030,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016923 preductal region of aortic arch - + - + FMA @@ -662987,7 +663059,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Area of aorta distal to the ductus arteriosus. FMA:3776 SCTID:197852003 @@ -662996,14 +663068,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016924 postductal region of aortic arch - + - + FMA @@ -663025,7 +663097,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Area of aorta at the area of insertion to the ductus arteriosus. FMA:3771 FMA:3778 @@ -663038,14 +663110,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0016925 juxtaductal region of aortic arch - + - + FMA @@ -663851,21 +663923,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + retractor lateralis m. retractor lateralis uberon UBERON:0017196 retractor lateralis muscle - + - + cjm @@ -664154,7 +664226,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The portion of the teeth, occurring on the lingual or palatal aspects, that forms a convex protuberance at the cervical third of the anatomic crown. It represents the lingual or palatal developmental lobe of these teeth. FMA has no definition but places this generically with upper, lower, canine, incisor subclasses. Wiktionary states cingulum is lower jaw molar only, and cingulid is upper molar only FMA:56731 @@ -664167,14 +664239,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0017295 cingulum of tooth - + - + FMA @@ -665153,7 +665225,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A paired dural venous sinus at the rim of the foramen magnum. EHDAA2:0001064 @@ -665166,7 +665238,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( marginal venous sinus - + @@ -665179,7 +665251,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 @@ -665207,7 +665279,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The primitive marginal sinuses (PMS) are embryonic sinuses forming the later superior sagittal sinus. EHDAA2:0001514 uberon @@ -665215,14 +665287,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0017638 primitive marginal sinus - + - + EHDAA2 @@ -665287,7 +665359,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Branch of spinal nerve that innervates the structures of the vertebral column. FMA:5988 SCTID:308794007 @@ -665300,14 +665372,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0017641 meningeal branch of spinal nerve - + - + FMA @@ -665955,7 +666027,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A raised fleshy area on the palm of the hand near the base of the thumb. FMA:61520 SCTID:362748007 @@ -665966,14 +666038,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( thenar eminence - + - + FMA @@ -665995,7 +666067,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Hypothenar refers to a group of three muscles of the palm that control the motion of the little finger. The three muscles are: Abductor digiti minimi Flexor digiti minimi Opponens digiti minimi. FMA:61523 SCTID:362749004 @@ -666006,14 +666078,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( hypothenar eminence - + - + FMA @@ -666371,7 +666443,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The thinner portion of the muscle of the palatopharyngeal arch, originating in the region of the midline where its fibers interdigitate with the contralateral partner, then passing posterior to the levator veli palatini muscle to join the longitudinal layer of pharyngeal musculature; acts as a sort of sphincter, reducing the caliber of the isthmus of fauces at the palatopharyngeal arch. FMA:46684 SCTID:244801005 @@ -666384,14 +666456,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018103 posterior fascicle of palatopharyngeus - + - + FMA @@ -667711,7 +667783,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The lateral limit of each lateral part of the oral fissure. FMA:77269 MFMO:0000145 @@ -667724,14 +667796,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( angle of oral opening https://github.com/obophenotype/uberon/issues/1795 - + - + MFMO-modified @@ -667834,7 +667906,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A small, triangular, flaccid portion of the tympanic membrane, or eardrum, lying above the malleolar folds, attached directly to the petrous bone at the notch of Rivinus. Size varies across mammals, with the sheep pars flaccida larger than the human FMA:56721 @@ -667849,14 +667921,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018152 pars flaccida of tympanic membrane - + - + FMA @@ -667911,7 +667983,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:56722 SCTID:362555006 pars tensa (membrana tympanica) @@ -667920,14 +667992,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018153 pars tensa of tympanic membrane - + - + FMA @@ -668121,7 +668193,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:52771 SCTID:368922002 folian process @@ -668132,7 +668204,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018160 anterior process of malleus - + @@ -668145,7 +668217,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -668309,6 +668381,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + + + + + + A lymphatic vessel that is part of a lung. FMA:234006 @@ -668733,8 +668811,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A sensory tract originating in the spinal cord responsible for transmitting fine touch, vibration and conscious proprioceptive information from the body to the cerebral cortex. The components include the fasciculus gracilis and fasciculus cuneatus. DMBA:17759 Wikipedia:Posterior_column-medial_lemniscus_pathway @@ -668754,24 +668832,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018237 dorsal column-medial lemniscus pathway - + - + - + ISBN:978-1-4615-0037-7 - + Wikipedia @@ -668945,7 +669023,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -668970,14 +669048,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018240 panniculus carnosus muscle - + - + FFED:cw @@ -669122,7 +669200,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A vein that supplies blood to the thymus. FMA:10647 @@ -669136,14 +669214,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The arteries supplying the thymus are derived from the internal thoracic artery, and from the superior thyroid artery and inferior thyroids.[WP] thymic artery - + - + FMA @@ -669302,20 +669380,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + In Cavio cobaya, arises from the external carotid or distal half of the common carotid artery, passed the thyroid gland cranially or penetrated it to terminate in the inferior laryngeal artery uberon UBERON:0018250 middle thyroid artery - + - + PMC1167197 @@ -669450,7 +669528,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -669466,14 +669544,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( skeletal musculature - + - + MA @@ -669789,7 +669867,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The anterior or rostral end of the zygomatic arch, which includes the temporal process of the zygomatic bone, but also including some of the body of the zygomatic bone. It may also include the zygomatico-temporal suture and the most rostral portion of the zygomatic process of the temporal bone. requires definition see https://github.com/obophenotype/uberon/issues/492 MFMO:0000109 @@ -669797,14 +669875,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018265 anterior root of zygomatic arch - + - + MFMO @@ -672799,7 +672877,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008 . @@ -672808,14 +672886,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018374 sallet - + - + ISBN:9780387714691 @@ -673337,7 +673415,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The posterior superior alveolar artery (posterior dental artery) is given off from the maxillary, frequently in conjunction with the infraorbital just as the trunk of the vessel is passing into the pterygopalatine fossa. FMA:49757 @@ -673348,14 +673426,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( posterior superior alveolar artery - + - + FMA @@ -673387,7 +673465,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:52930 SCTID:280235006 SCTID:280239000 @@ -673396,14 +673474,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018398 superior alveolar nerve - + - + FMA @@ -673466,7 +673544,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:53243 SCTID:280261005 inferior dental nerve @@ -673474,14 +673552,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018405 inferior alveolar nerve - + - + FMA @@ -673508,7 +673586,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Mental nerve is a general somatic afferent (sensory) nerve which provides sensation to the anterior aspects of the chin and lower lip as well as the buccal gingivae of the mandibular anterior teeth and the premolars. It is a branch of the posterior trunk of the inferior alveolar nerve, which is itself a branch of the mandibular division of the trigeminal nerve (CN V). The nerve emerges at the mental foramen in the mandibula, and divides beneath the Depressor anguli oris muscle into three branches: one descends to the skin of the chin. two ascend to the skin and mucous membrane of the lower lip. These branches communicate freely with the facial nerve. FMA:53250 SCTID:280138001 @@ -673517,14 +673595,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018406 mental nerve - + - + FMA @@ -674658,8 +674736,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf. EFO:0003699 TAO:0005028 @@ -674673,11 +674751,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018549 ventral wall of dorsal aorta - + - + @@ -674690,13 +674768,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ZFA - + ZFA @@ -676944,7 +677022,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The peristomium is the second body segment in an annelid worm's body in the anterior end. It is directly behind the prostomium and contains the mouth, tentacular cirri, and sometimes feeding palps, which may instead occur on the prostomium. If an eversible pharynx is present, it is contained in this segment as well, and can fill up to 20 segments when inverted, depending on the species. peristomium Wikipedia:Peristomium @@ -676952,14 +677030,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018650 annelid peristomium - + - + Wikipedia @@ -677408,7 +677486,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A splanchnic nerves that arises from sacral spinal nerves S2, S3, S4 to provide parasympathetic innervation to the hindgut. EHDAA2:0001432 EHDAA:5628 @@ -677425,7 +677503,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018675 pelvic splanchnic nerve - + @@ -677438,7 +677516,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2 WP @@ -677544,7 +677622,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and general visceral afferent fibers. FMA:6280 Wikipedia:Thoracic_splanchnic_nerves @@ -677552,14 +677630,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0018679 thoracic splanchnic nerve - + - + FMA @@ -678173,7 +678251,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The deep terminal division of the pudendal nerve that runs along the dorsum of the penis and innervates the the corpus cavernosum penis, the prepuce and the glans penis. FMA:21869 SCTID:306800005 @@ -678186,14 +678264,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019197 dorsal nerve of penis - + - + FMA @@ -678255,7 +678333,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The deep terminal division of the pudendal nerve that runs along the dorsum of the clitoral shaft and innervates the the glans clitoris. FMA:21870 SCTID:367687005 @@ -678266,14 +678344,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019198 dorsal nerve of clitoris - + - + FMA @@ -678302,21 +678380,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + SCTID:182332004 side of chest uberon UBERON:0019199 lateral side of chest - + - + FMA @@ -679770,7 +679848,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A fiber pathway in the cerebral white matter that connects anterior portions of the temporal lobe with the inferior frontal gyrus and the middle frontal gyrus. It is not readily distinguished in myelin-stained cross-sections (adapted from Brain Info). HBA:9284 NLX:98733 @@ -679780,14 +679858,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019275 uncinate fasciculus of the forebrain - + - + HBA @@ -679809,7 +679887,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1447 DHBA:12130 @@ -679819,14 +679897,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( inferior rostral gyrus - + - + DHBA @@ -679836,7 +679914,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1311 DHBA:12129 @@ -679847,14 +679925,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( superior rostral gyrus - + - + DHBA @@ -679870,7 +679948,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:146034876 uberon @@ -679878,14 +679956,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( rostral gyrus - + - + DHBA @@ -679905,7 +679983,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12064 FMA:62439 @@ -679916,7 +679994,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019283 lateral longitudinal stria - + @@ -679929,7 +680007,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -680011,7 +680089,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DMBA:15965 EMAPA:35107 MA:0002932 @@ -680020,14 +680098,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019289 accessory olfactory bulb external plexiform layer - + - + MA @@ -680043,7 +680121,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DMBA:15962 EMAPA:35110 MA:0002934 @@ -680052,14 +680130,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019290 accessory olfactory bulb internal plexiform layer - + - + MA @@ -680380,7 +680458,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of cells located between the lateral septal nucleus and the anterior commissure in the mouse ( Paxinos-2001 ). Some authors regard it as part of the lateral septal nucleus ( Swanson-1998 ). DHBA:13033 DMBA:15761 @@ -680390,14 +680468,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019308 septohypothalamic nucleus - + - + DHBA @@ -680537,7 +680615,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12649 HBA:9551 neuronames:1118 @@ -680545,14 +680623,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0019314 epifascicular nucleus - + - + HBA @@ -680898,7 +680976,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The spinal accessory nucleus lies within the cervical spinal cord (C1-C5) in the ventral horn. The nucleus ambiguus is classically said to provide the 'cranial component' of the accessory nerve. However, the very existence of this cranial component has been recently questioned and seen as contributing exclusively to the vagus nerve. The terminology continues to be used in describing both human anatomy, and that of other animals. EMAPA:37067 FMA:83965 @@ -680918,7 +680996,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( See also: Wikipedia:Spinal_accessory_nucleus accessory XI nerve nucleus - + @@ -680937,7 +681015,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MA @@ -681045,7 +681123,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:35694 MA:0002928 MBA:780 @@ -681054,14 +681132,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022229 posterior amygdaloid nucleus - + - + MA @@ -681077,7 +681155,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:35745 MA:0000920 MBA:822 @@ -681087,7 +681165,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022230 retrohippocampal region - + @@ -681100,7 +681178,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ABA @@ -681116,8 +681194,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -681136,11 +681214,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022232 secondary visual cortex - + - + @@ -681153,13 +681231,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + cjm - + MA @@ -681169,8 +681247,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + DHBA:12066 FMA:67956 HBA:265505202 @@ -681192,11 +681270,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022234 medial longitudinal stria - + - + @@ -681209,13 +681287,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA - + HBA @@ -681367,7 +681445,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:266441633 FMA:62074 @@ -681382,14 +681460,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022237 anterior thalamic peduncle - + - + HBA @@ -681655,7 +681733,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The superior longitudinal fasciculus (also called the superior longitudinal fascicle or SLF) is a pair of long bi-directional bundles of neurons connecting the front and the back of the cerebrum. Each association fiber bundle is lateral to the centrum ovale of a cerebral hemisphere and connects the frontal, occipital, parietal, and temporal lobes. The neurons pass from the frontal lobe through the operculum to the posterior end of the lateral sulcus where numerous neurons radiate into the occipital lobe and other neurons turn downward and forward around the putamen and radiate to anterior portions of the temporal lobe. DHBA:10592 FMA:77631 @@ -681668,14 +681746,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022246 superior longitudinal fasciculus - + - + HBA @@ -681697,21 +681775,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:10568 uberon FIFT UBERON:0022247 forebrain ipsilateral fiber tracts - + - + DHBA @@ -681851,7 +681929,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The precentral sulcus lies parallel to, and in front of, the central sulcus. (A sulcus is one of the prominent grooves on the surface of the human brain. ) The precentral sulcus divides the inferior, middle, and superior frontal gyri from the precentral gyrus. In the majority of brains, the precentral sulcus is divided into two parts: the inferior precentral sulcus and the superior precentral sulcus. However, the precentral sulcus may also be divided into three parts or form one continuous sulcus. DHBA:10628 FMA:83800 @@ -681863,7 +681941,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022252 precentral sulcus - + @@ -681876,7 +681954,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -681902,7 +681980,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The thalamic fasciculus is a component of the subthalamus. It is sometimes considered synonymous with 'field H1 of Forel'. Nerve fibres forming a composite bundle containing cerebellothalamic (crossed) and pallidothalamic (uncrossed) fibres that is insinuated between the thalamus and zona incerta. The thalamic fasciculus consists of the joint fibers of the ansa lenticularis and the lenticular fasciculus, coming from different portions of the medial globus pallidus, before they jointly enter the ventral lateral nucleus of the thalamus. DHBA:10593 FMA:62065 @@ -681930,14 +682008,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022254 ventral thalamic fasciculus - + - + DHBA @@ -682067,7 +682145,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -682095,14 +682173,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022256 subthalamic fasciculus - + - + DHBA @@ -682137,7 +682215,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12648 FMA:77099 HBA:9548 @@ -682146,7 +682224,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022258 endolemniscal nucleus - + @@ -682159,7 +682237,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -682237,7 +682315,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The acoustic radiations or auditory radiations are structures found in the brain, in the ventral cochlear pathway, a part of the auditory system. Lesions to the auditory radiations could be a cause of cortical deafness. DHBA:266441583 FMA:62413 @@ -682254,7 +682332,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022262 auditory radiation - + @@ -682267,7 +682345,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA @@ -682320,7 +682398,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The optic radiation (also known as the geniculo-calcarine tract or as the geniculostriate pathway) is a collection of axons from relay neurons in the lateral geniculate nucleus of the thalamus carrying visual information to the visual cortex (also called striate cortex) along the calcarine fissure. There is one such tract on each side of the brain. DHBA:266441621 @@ -682344,7 +682422,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( optic radiation - + @@ -682357,7 +682435,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA @@ -682433,7 +682511,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The planum temporale is the cortical area just posterior to the auditory cortex within the Sylvian fissure. It is a triangular region which forms the heart of Wernicke's area, one of the most important functional areas for language. The planum temporale shows a significant asymmetry. In 65% of all individuals the left planum temporale appears to be more developed, while the right planum temporale is more developed in only 10%. In some peoplebs brains, the planum temporale is more than five times larger on the left than on the right, making it the most asymmetrical structure in the brain. This greater size of the left planum temporale compared with the right is already present in the foetus, where it can be observed starting from the 31st week of gestation. This observation strengthens the hypothesis of a genetic predisposition for brain asymmetry. @@ -682447,7 +682525,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( planum temporale - + @@ -682460,7 +682538,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -682484,7 +682562,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Corticopontine fibers, commonly referred to as corticobulbar fibers, are projections from the cerebral cortex to the pontine nuclei. Depending upon the lobe of origin, they can be classified as frontopontine fibers, parietopontine fibers, temporopontine fibers and occipitopontine fibers. They are motor fibers that stretch from the precentral gyrus (motor strip) to the nuclei of cranial nerves V (trigenimal), VII (facial) and XII (hypoglossal). These fibers run alongside the corticospinal fibers. DHBA:266441721 FMA:75190 @@ -682506,14 +682584,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022271 corticopontine fibers - + - + HBA @@ -682584,7 +682662,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -682611,14 +682689,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022272 corticobulbar tract - + - + HBA @@ -682812,7 +682890,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The splenic (or left colic) flexure is a sharp bend between the transverse and the descending colon in the left upper quadrant of humans. The left colic flexure is near the spleen, and hence called the splenic flexure. There are two colic flexures in the transverse colon &mdash; the other being the hepatic flexure in the right upper quadrant. FMA:14551 @@ -682830,14 +682908,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( splenic flexure of colon - + - + Wikipedia @@ -682898,7 +682976,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Hepatic (or the right colic) flexure is the sharp bend between the ascending and the transverse colon. The right colic flexure is adjacent to the liver, and is therefore also known as the hepatic flexure. Thus, the left colic flexure is also known as the splenic flexure (as it is close to the spleen). The hepatic flexure lies in the right upper quadrant of the abdomen in humans. FMA:14550 @@ -682916,14 +682994,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( hepatic flexure of colon - + - + Wikipedia @@ -683353,7 +683431,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -683369,14 +683447,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022287 tear film - + - + primarily aqueous layer @@ -683543,7 +683621,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nerve that innervates a lower eyelid and is a branch of the infra-orbital branch of the maxillary nerve. FMA:52983 Wikipedia:Inferior_palpebral_nerve @@ -683552,7 +683630,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022296 inferior palpebral branch of infra-orbital nerve - + @@ -683568,7 +683646,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -683590,7 +683668,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nerve that innervates an eyelid and is a branch of the infra-orbital branch of the maxillary nerve. SCTID:280236007 palpebral branch of maxillary nerve @@ -683598,7 +683676,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022297 palpebral branch of infra-orbital nerve - + @@ -683614,7 +683692,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -683686,8 +683764,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A branch of the ophthalmic nerve that serves to supply the mucous membrane of the nose, the tip of the nose, and the conjunctiva. BTO:0001452 FMA:52668 @@ -683702,24 +683780,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022300 nasociliary nerve - + - + - + BTO - + FMA @@ -683941,7 +684019,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Most superficial layer of the superior colliculus consisting primarily of thin fibers derived primarily from the occipital cortex (Brodal, Neurological Anatomy, 2nd 3d, 1981, pg. 544). NLX:144108 uberon @@ -683951,7 +684029,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( superior colliculus stratum zonale - + @@ -683964,7 +684042,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -683992,8 +684070,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Note that in some lamination schemes, more particularly so in primates, this layer is referred to as layer IV thus resulting in some confusion when compared to the present scheme where the lamina dissecans is referred to layer IV[DOI:10.1155/2008/381243] NLX:144263 uberon @@ -684002,11 +684080,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022315 primary motor cortex layer 5 - + - + @@ -684019,13 +684097,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx - + nlx @@ -684047,8 +684125,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + NLX:144264 uberon primary motor cortex lamina 6 @@ -684057,11 +684135,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022316 primary motor cortex layer 6 - + - + @@ -684074,13 +684152,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx - + nlx @@ -684118,7 +684196,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -684139,14 +684217,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022317 olfactory cortex layer 1 - + - + nlx @@ -684184,7 +684262,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -684198,14 +684276,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022318 olfactory cortex layer 2 - + - + nlx @@ -684227,7 +684305,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Layer of the lateral geniculate nucleus characterized by small cells (adapted from Wikipedia: https://en.wikipedia.org/wiki/Lateral_geniculate_nucleus). NLX:152619 LGN P-cell layer @@ -684236,7 +684314,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022319 lateral geniculate nucleus parvocellular layer - + @@ -684249,7 +684327,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + cjm @@ -684313,7 +684391,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -684333,14 +684411,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( This layer is better developed in the medial entorhinal cortex although species differences are apparent[DOI:10.1155/2008/381243] entorhinal cortex layer 4 - + - + nlx @@ -684397,7 +684475,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -684412,14 +684490,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( entorhinal cortex layer 5 - + - + nlx @@ -684441,7 +684519,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLX:89 uberon MoC @@ -684449,7 +684527,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022326 molecular layer of dorsal cochlear nucleus - + @@ -684462,7 +684540,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -684494,7 +684572,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -684515,14 +684593,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( entorhinal cortex layer 3 - + - + nlx @@ -684578,7 +684656,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -684595,14 +684673,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( This layer is delineated by the white matter, multiple layers can be distinguished, more in particular in primates[DOI:10.1155/2008/381243] entorhinal cortex layer 6 - + - + nlx @@ -684641,7 +684719,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -684663,14 +684741,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( entorhinal cortex layer 1 - + - + nlx @@ -684740,7 +684818,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -684758,14 +684836,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022337 entorhinal cortex layer 2 - + - + nlx @@ -684811,7 +684889,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Superficial region of layer 2 of the piriform cortex characterized by a less dense packing of cells and a concentration of semilunar cell bodies. NLXANAT:091007 uberon @@ -684822,7 +684900,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( piriform cortex layer 2a - + @@ -684835,7 +684913,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -684869,7 +684947,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Deeper of two subdivisions of piriform layer 2 characterized by more densely packed cell bodies dominated by pyramidal cell bodies. NLXANAT:091008 uberon @@ -684877,7 +684955,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( piriform cortex layer 2b - + @@ -684890,7 +684968,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -684906,7 +684984,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:277810 NLXANAT:1008003 uberon @@ -684915,7 +684993,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022346 dentate gyrus molecular layer middle - + @@ -684928,7 +685006,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -684950,7 +685028,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Inner third of the dentate gyrus. FMA:277812 NLXANAT:1008004 @@ -684960,7 +685038,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022347 dentate gyrus molecular layer inner - + @@ -684973,7 +685051,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -685001,7 +685079,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:1008005 uberon enclosed blade of stratum granulare @@ -685012,7 +685090,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022348 dentate gyrus granule cell layer inner blade - + @@ -685025,7 +685103,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -685065,7 +685143,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:1008006 uberon exposed blade of stratum granulare @@ -685076,7 +685154,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022349 dentate gyrus granule cell layer outer blade - + @@ -685089,7 +685167,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx @@ -685217,7 +685295,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Component of the orbtial frontal cortex. The rostral boundary is the first slice where the medial orbital gyrus became visible whereas the caudal boundary is the disappearance of the medial orbital gyrus/gyrus rectus. The medial and lateral boundaries are the cingulate cortex on the u2018inflatedu2019 surface and the medial bank of the superior frontal gyrus (or the cingulate gyrus when visible) respectively (Christine Fennema-Notestine). frontal medial cortex @@ -685228,14 +685306,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022352 medial orbital frontal cortex - + - + NIFSTD @@ -685275,7 +685353,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Component of the cingulate cortex. The rostral and caudal extent were the caudal anterior and the isthmus divisions of the cingulate cortex respectively. The medial and lateral boundaries were the corpus callosum and as the superior frontal gyrus and/or paracentral lobule respectively (Christine Fennema-Notestine). check relationship to gyrus. See https://github.com/obophenotype/uberon/issues/626 posterior cingulate @@ -685290,14 +685368,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022353 posterior cingulate cortex - + - + NIFSTD @@ -685825,8 +685903,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + DHBA:146034872 FMA:71037 @@ -685837,24 +685915,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( paracingulate gyrus - + - + - + FMA - + DHBA @@ -685895,8 +685973,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The second order neuron fibers of the corticopontocerebellar tracts that cross to the other side of the pons and run within the middle cerebellar peduncles, from the pons to the contralateral cerebellum. DHBA:12769 HBA:265505470 @@ -685912,24 +685990,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022421 pontocerebellar tract - + - + - + DHBA - + HBA @@ -685978,7 +686056,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A collection of principally small and medium-sized cells in the midbrain tegmentum lying at the margin of the midbrain adjacent to the nuclei of the lateral lemniscus. DHBA:12313 FMA:77492 @@ -685994,7 +686072,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022423 sagulum nucleus - + @@ -686007,7 +686085,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -686053,7 +686131,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of neurons embedded in the pontine central gray of the pontine tegmentum. Located dorsal to the internal genu of the facial nerve, it is found in the human ( Paxinos-2012 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-2004 ), and the mouse ( Franklin-2008 ). Functionally it is part of the dorsal pontine gray of the subcortical motor system ( Swanson-2004 ). DHBA:12662 DMBA:17190 @@ -686064,14 +686142,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022424 supragenual nucleus of pontine tegmentum - + - + DHBA Neuronames-def @@ -686101,7 +686179,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:15541 @@ -686111,14 +686189,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022425 anterior corona radiata - + - + DHBA @@ -686147,7 +686225,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:15542 superior portion of corona radiata @@ -686156,14 +686234,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022426 superior corona radiata - + - + DHBA @@ -686186,7 +686264,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:15543 posterior portion of corona radiata @@ -686195,14 +686273,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022427 posterior corona radiata - + - + DHBA @@ -686373,7 +686451,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Part of the superior olivary complex of nuclei in the caudal pontine tegmentum, situated within the trapezoid body in humans. (Brodal, Neurological Anatomy, 3rd edition, 1981, pg 617). In many species, it comprises a medial superior olivary nucleus and a lateral superior olivary nucleus. Wikipedia includes Medial nucleus of the trapezoid body. Wikipedia:Superior_olivary_complex#Primary_nuclei many sources refer to this simply as the 'superior olive' or the 'superior olivary nucleus'. However, this is confusing as superior olive is sometimes used to denote the full SOC, which includes periolvary nuclei[https://github.com/obophenotype/uberon/issues/631] @@ -686388,14 +686466,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022434 primary superior olive - + - + NIFSTD @@ -686418,8 +686496,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + . nuclei periolivares peri-olivary nuclei @@ -686432,24 +686510,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022437 dorsal periolivary nucleus - + - + - + FMA - + Wikipedia @@ -686491,7 +686569,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Component of the cingulate cortex. The rostral boundary was the first appearance of the cingulate sulcus (inferior to the superior frontal sulcus) whereas the caudal boundary was the first appearance of the genu of the corpus callosum. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was defined as the medial division of the orbitofrontal gyrus (Christine Fennema-Notestine). BIRNLEX:975 FMA:271599 @@ -686500,14 +686578,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022438 rostral anterior cingulate cortex - + - + NIFSTD @@ -686530,8 +686608,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A part of the entorhinal area defined on the basis of connectivity. It is the rostral portion, which receives a projection from the olfactory bulb (Price-90)-Adapted from Brain Info. BIRNLEX:2705 neuronames:2274 @@ -686540,24 +686618,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022453 olfactory entorhinal cortex - + - + - + NIFSTD - + NIFSTD @@ -686580,7 +686658,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of structures defined by connectivity, namely, structures that receive axons from the olfactory bulb. They include the anterior olfactory nucleus, the anterior perforated substance, the rostral part of the medial amygdaloid nucleus (anterior cortical nucleus of amygdala), and structures in the anterior part of the parahippocampal gyrus, namely, the prepyriform area, most of the periamygdaloid area, and the rostral part of the entorhinal area (Price-90). Note that some authors have regarded the olfactory bulb itself as the primary olfactory area and the areas to which it projects as secondary (Anthoney-94). In the mouse (Dong-2004) and the rat (Swanson-2004), olfactory areas include the olfactory bulb, accessory olfactory bulb, anterior olfactory nucleus, tenia tecta, prepyriform area, postpiriform transition area, piriform amygdaloid area, nucleus of lateral olfactory tract, and cortical amygdaloid area. BIRNLEX:2706 uberon @@ -686588,14 +686666,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022469 primary olfactory cortex - + - + NIFSTD @@ -686649,7 +686727,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Component of the parietal lobe. The rostral boundary of the pericalcarine cortex was the first appearance of the calcarine sulcus whereas the caudal boundary was the most posterior coronal slice where the calcarine sulcus was visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the inferomedial end of the calcarine sulcus respectively (Christine Fennema-Notestine). BIRNLEX:1059 pericalcarine cortex @@ -686657,14 +686735,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022534 pericalcarine cortex - + - + NIFSTD @@ -686815,7 +686893,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1176 UMLS:C0228391 neuronames:461 @@ -686824,14 +686902,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022649 habenulo-interpeduncular tract of diencephalon - + - + ZFA @@ -686948,7 +687026,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1223 UMLS:C0152301 orbital gyri complex @@ -686957,14 +687035,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022695 orbital gyri complex - + - + NIFSTD @@ -687007,7 +687085,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Component of the orbtial frontal cortex The rostral boundary is the first slice where the lateral orbital gyrus is apparent with the frontomarginal sulcus whereas the caudal boundary is the disappearance of the lateral orbital gyrus. The medial and lateral boundaries are the midpoint of the olfactory sulcus and the lateral bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christine Fennema-Notestine). BIRNLEX:1244 lateral orbital frontal cortex @@ -687015,14 +687093,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022716 lateral orbital frontal cortex - + - + NIFSTD @@ -687045,7 +687123,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1258 transverse frontopolar gyri complex uberon @@ -687053,14 +687131,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022730 transverse frontopolar gyri complex - + - + NIFSTD @@ -687463,7 +687541,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The reticulospinal tract (or anterior reticulospinal tract) is an extrapyramidal motor tract which travels from the reticular formation. BIRNLEX:1471 UMLS:C0175558 @@ -687474,7 +687552,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0022943 reticulospinal tract - + @@ -687487,7 +687565,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -687750,7 +687828,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1622 HBA:4447 neuronames:851 @@ -687761,14 +687839,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023094 posterodorsal nucleus of medial geniculate body - + - + NIFSTD @@ -687973,7 +688051,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:2649 FMA:72610 UMLS:C0175539 @@ -687984,14 +688062,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023378 medullary anterior horn - + - + FMA @@ -688022,7 +688100,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:2662 HBA:9661 UMLS:C0175521 @@ -688037,14 +688115,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023390 medial subnucleus of solitary tract - + - + NIFSTD @@ -688711,7 +688789,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -688725,14 +688803,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023740 habenulo-interpeduncular tract of midbrain - + - + NIFSTD @@ -688755,7 +688833,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:906 UMLS:C0175321 intermediate part of hypophysis @@ -688767,14 +688845,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023752 intermediate part of hypophysis - + - + NIFSTD @@ -688841,7 +688919,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A composite structure of the temporal lobe that includes the subiculum, the presubiculum and the parasubicular area (Amaral-90). BIRNLEX:944 FMA:275157 @@ -688851,14 +688929,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023787 subicular complex - + - + NIFSTD @@ -689043,7 +689121,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An area of the brain that locates at the interception of temporal and parietal cortices (at the posterior end of the Sylvian fissure). NLX:144255 temporoparietal junction @@ -689051,14 +689129,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023852 temporoparietal junction - + - + NIFSTD @@ -689112,7 +689190,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLX:144265 primary somatosensory cortex lamina VI uberon @@ -689120,14 +689198,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023859 primary somatosensory cortex layer 6 - + - + NIFSTD @@ -689155,7 +689233,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A portion of the superior temporal gyrus near the temporal pole in the human. HBA:4177 @@ -689167,14 +689245,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( planum polare - + - + NIFSTD @@ -689234,21 +689312,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLX:22533 medial ventral tegmental area uberon UBERON:0023865 medial ventral tegmental area - + - + NIFSTD @@ -689270,8 +689348,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Part of olfactory tubercle defined by dense aggregations of granule cells. NLX:50741 islands of calleja of olfactory tubercle @@ -689280,24 +689358,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023867 islands of Calleja of olfactory tubercle - + - + - + NIFSTD - + NIFSTD @@ -689331,7 +689409,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Regional part of telencephalon; the most prominent of the islands of Calleja located medially in the nucleus accumbens (adapted from Braininfo.org). DHBA:10359 MBA:489 @@ -689345,14 +689423,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023868 isla magna of Calleja - + - + NIFSTD @@ -689453,7 +689531,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Superficial part of plexiform layer (layer 1) of piriform cortex that receives afferents from the olfactory bulb by way of the lateral olfactory tract. NLXANAT:091004 piriform cortex layer 1a @@ -689461,14 +689539,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023900 piriform cortex layer 1a - + - + NIFSTD @@ -689490,7 +689568,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Deeper part of the plexiform (layer 1) of piriform cortex characterized by projection of association fibers from other parts of the piriform cortex and other olfactory areas. NLXANAT:091005 piriform cortex layer 1b @@ -689498,14 +689576,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023901 piriform cortex layer 1b - + - + NIFSTD @@ -689931,7 +690009,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Part of bed nucleus of stria terminalis, comprising a distinct, large, egg-shaped collection of neurons that, together with the juxtacapsular (Ju) and rhomboid (Rh) nuclei, encompass the anterolateral area of the BST (Ju and Swanson, 1989). NLXANAT:1005035 bed nuclei of the stria terminalis oval nucleus @@ -689939,14 +690017,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023958 bed nuclei of the stria terminalis oval nucleus - + - + NIFSTD @@ -689968,7 +690046,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Central cervical spinocerebellar tract. NLXANAT:1010018 central cervical spinocerebellar tract @@ -689976,14 +690054,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023983 central cervical spinocerebellar tract - + - + NIFSTD @@ -690005,7 +690083,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Originates from cells rostral to Clarke's column and sends uncrossed axons through the lateral funiculus to the cerebellum. It reaches the cerebellum partly through the brachium conjunctivum and partly through the restiform body, terminating bilaterally in the anterior lobe of the cerebellum. NLXANAT:1010019 rostral spinocerebellar tract @@ -690013,14 +690091,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023984 rostral spinocerebellar tract - + - + NIFSTD @@ -690042,7 +690120,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:278665 NLXANAT:20081202 hemispheric lobule ii @@ -690055,7 +690133,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023998 cerebellum hemispheric lobule II - + @@ -690068,7 +690146,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -690114,7 +690192,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:278672 NLXANAT:20081203 hemispheric lobule III @@ -690127,7 +690205,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0023999 cerebellum hemispheric lobule III - + @@ -690140,7 +690218,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -690186,7 +690264,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:272300 FMA:278683 NLXANAT:20081204 @@ -690202,7 +690280,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024000 cerebellum hemispheric lobule IV - + @@ -690215,7 +690293,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -690273,7 +690351,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:278723 NLXANAT:20081205 hemispheric lobule V @@ -690288,7 +690366,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024001 cerebellum hemispheric lobule V - + @@ -690301,7 +690379,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -690384,7 +690462,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:20081213 hemispheric lobule X uberon @@ -690392,7 +690470,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024009 cerebellum hemispheric lobule X - + @@ -690405,7 +690483,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -690466,21 +690544,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:20081247 rostral portion of the medial accessory olive uberon UBERON:0024043 rostral portion of the medial accessory olive - + - + NIFSTD @@ -690631,7 +690709,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Posterior division of the supraoptic nucleus, formed by the ascension of the optic tract splitting the nucleus into two regions. The tuberal SON lies along the posterior tuber cinereum of the hypothalamus. In some species, some neurons lie under the optic chiasm. NLXANAT:20090311 tuberal supraoptic nucleus @@ -690640,14 +690718,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024079 tuberal supraoptic nucleus - + - + NIFSTD @@ -690751,7 +690829,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The basis pontis is the anterior portion of the pons. NLXANAT:20090704 Wikipedia:Basilar_part_of_pons @@ -690760,14 +690838,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024110 basis pontis - + - + NIFSTD @@ -690932,7 +691010,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1064 FMA:274414 neuronames:842 @@ -690941,14 +691019,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024183 inferior transverse frontopolar gyrus - + - + NIFSTD @@ -690981,7 +691059,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1074 neuronames:823 medial transverse frontopolar gyrus @@ -690989,14 +691067,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024193 medial transverse frontopolar gyrus - + - + NIFSTD @@ -691019,7 +691097,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1082 FMA:274408 neuronames:1 @@ -691028,14 +691106,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0024201 superior transverse frontopolar gyrus - + - + NIFSTD @@ -691813,14 +691891,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1789 left sub-lobar region uberon UBERON:0024900 left sub-lobar region - + @@ -691833,7 +691911,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -691850,14 +691928,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1790 right sub-lobar region uberon UBERON:0024901 right sub-lobar region - + @@ -691870,7 +691948,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -692129,7 +692207,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:4014 UMLS:C0262333 neuronames:147 @@ -692141,14 +692219,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0025096 superior calcarine sulcus - + - + NIFSTD @@ -692183,7 +692261,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:4020 UMLS:C0262253 neuronames:144 @@ -692193,14 +692271,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0025102 inferior occipital sulcus - + - + NIFSTD @@ -692223,7 +692301,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:4021 UMLS:C0262249 neuronames:148 @@ -692235,14 +692313,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0025103 inferior calcarine sulcus - + - + NIFSTD @@ -692277,7 +692355,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:4022 UMLS:C0262230 neuronames:146 @@ -692289,14 +692367,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0025104 ectocalcarine sulcus - + - + NIFSTD @@ -692853,7 +692931,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Cortical region surrounding the posterior rhinal sulcus in the rat, encompassing areas 35 and 36 in the rat. Rostraly, it abuts the posterior insular cortex. NLXANAT:1005017 perirhinal cortex of rodent of burwell et al 1995 @@ -692863,7 +692941,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0025584 perirhinal cortex of rodent of Burwell et al 1995 - + @@ -692876,7 +692954,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -693194,7 +693272,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NLXANAT:20081237 paravermis parts of the cerebellar cortex uberon @@ -693202,14 +693280,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0025677 paravermis parts of the cerebellar cortex - + - + cjm @@ -694997,8 +695075,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A superficial feature of the parietal lobe. It is the portion of the superior temporal sulcus that extends into the angular gyrus (Ono-90). (NN). BIRNLEX:4012 HBA:9384 @@ -695008,24 +695086,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0026725 angular sulcus - + - + - + NIFSTD - + NIFSTD @@ -695527,7 +695605,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + lateral eminence BIRNLEX:994 UMLS:C0262266 @@ -695537,14 +695615,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0027109 lateral eminence of hypophysis - + - + NIFSTD @@ -695846,7 +695924,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + consider merging DHBA:12384 NLXANAT:20081214 @@ -695856,7 +695934,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0027285 paravermis lobule area - + @@ -695869,7 +695947,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -696213,7 +696291,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1130 posterior superior frontal sulcus @@ -696221,14 +696299,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0027513 posterior superior frontal sulcus - + - + NIFSTD @@ -696451,7 +696529,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BIRNLEX:1338 neuronames:838 anterior superior frontal sulcus @@ -696462,14 +696540,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0027716 anterior superior frontal sulcus - + - + NIFSTD @@ -696809,7 +696887,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A projecting portion of the spiral ligament of the cochlea, bounding the lower edge of the stria vascularis and containing within it a blood vessel, the vas prominens. spiral prominence BIRNLEX:2532 @@ -696824,14 +696902,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0028194 spiral prominence of cochlear duct - + - + MA @@ -699444,7 +699522,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Composite sulcus of the frontal lobe of the macaque. Located on the dorsolateral surface, it consists of the superior ramus of the arcuate sulcus (macaque), the inferior ramus of the arcuate sulcus and the spur of the arcuate sulcus (macaque) (neuronames:2379). NLX:153910 @@ -699458,14 +699536,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034671 arcuate sulcus - + - + NIFSTD @@ -699555,8 +699633,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A cytoarchitecturally defined portion of the periamygdalar area and the cortical amygdalar nucleus at the caudal extreme of the amygdala. All authors regard it as occupying the caudal third of the amygdala, which abuts the hippocampal formation. In the human ( Mai-1997 ) and the macaque ( Amaral-1992 ) it is located close to the medial surface of the temporal lobe; it is bounded internally by the posterior cortical amygdalar nucleus and the temporal horn of the lateral ventricle. In the rat ( Swanson-2004 ) and mouse ( Hof-2000 ) it is bounded largely by the posterior cortical amygdalar nucleus and the accessory basal nucleus (known as the basomedial nucleus of the amygdala in rodents); the stria terminalis separates it from the ventricle. According to some authors the amygdalohippocampal area extends anteriorly to occupy the caudal half of the amygdala. These authors divide the area into two or three parts, which in the human ( Olmos-2004 ), the rat ( Paxinos-2009b ), and the mouse ( Franklin-2008 ) are named on the basis of location: anterolateral, posterolateral and posteromedial parts. In the macaque ( Paxinos-2009a ) the rostral portion of the area is divided into two parts on the basis of cellular morphology: magnocellular and parvicellular parts. Some authors refer to the area in rodents as the 'posterior amygdalar nucleus' ( Swanson-2004; Hof-2000 ).[neuronames:2028] DHBA:10377 @@ -699583,24 +699661,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034673 amygdalohippocampal area - + - + - + EMAPA - + DHBA @@ -699720,7 +699798,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12025 FMA:61949 @@ -699747,14 +699825,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034676 forceps major of corpus callosum - + - + DHBA @@ -699876,8 +699954,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + DHBA:12024 FMA:61944 SCTID:369199005 @@ -699903,24 +699981,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034678 forceps minor of corpus callosum - + - + - + FMA - + DHBA @@ -700195,8 +700273,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The cremasteric artery (external spermatic artery) is a branch of the Inferior epigastric artery which accompanies the spermatic cord, and supplies the Cremaster and other coverings of the cord, anastomosing with the testicular artery (internal spermatic artery in older texts). (In the female, the cremesteric artery is very small and accompanies the round ligament.). FMA:70192 @@ -700209,24 +700287,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( cremasteric artery - + - + - + FMA - + FMA @@ -700704,7 +700782,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0001267 EMAPA:17585 spinal cord lateral wall ventricular layer @@ -700712,14 +700790,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034710 spinal cord ventricular layer - + - + EHDAA2 @@ -701218,7 +701296,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. FMA:52731 SCTID:58267004 @@ -701232,14 +701310,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034725 pterygopalatine nerve - + - + FMA @@ -701323,7 +701401,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The artery of bulb of vestibule is a branch of the internal pudendal artery. FMA:20900 @@ -701336,14 +701414,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( vestibular bulb artery - + - + FMA @@ -701609,7 +701687,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Any ligament that connects the coracoid process with the clavicle. FMA:26029 SCTID:361899005 @@ -701619,14 +701697,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034736 coracoclavicular ligament - + - + FMA @@ -701648,8 +701726,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The inferior longitudinal fasciculus connects the temporal lobe and occipital lobe, running along the lateral walls of the inferior and posterior cornua of the lateral ventricle. The existence of this fasciculus independent from the occipitotemporal fasciculus has been questioned for the human being, such that it has been proposed that the term inferior longitudinal fasciculus be replaced by the term 'occipitotemporal projection'. DHBA:10580 FMA:77632 @@ -701666,24 +701744,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034743 inferior longitudinal fasciculus - + - + - + HBA - + DHBA @@ -701763,7 +701841,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12043 FMA:76976 @@ -701779,14 +701857,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034746 anterior thalamic radiation - + - + DHBA @@ -701917,7 +701995,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12052 FMA:61957 SCTID:362363008 @@ -701935,14 +702013,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034749 retrolenticular part of internal capsule - + - + DHBA FMA @@ -702058,7 +702136,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The part of the auditory cortex that is located on the superior temporal gyrus in the temporal lobe and receives point-to-point input from the ventral division of the medial geniculate complex. DHBA:10236 FMA:272953 @@ -702074,14 +702152,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034751 primary auditory cortex - + - + cjm @@ -702134,7 +702212,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The part of the auditory cortex that receive more diffuse input from the belt areas of the medial geniculate complex. DHBA:10239 @@ -702152,14 +702230,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034752 secondary auditory cortex - + - + cjm @@ -702276,8 +702354,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The occipitofrontal fasciculus passes backward from the frontal lobe, along the lateral border of the caudate nucleus, and on the medial aspect of the corona radiata; its fibers radiate in a fan-like manner and pass into the occipital and temporal lobes lateral to the posterior and inferior cornua. DHBA:10588 HBA:9269 @@ -702288,24 +702366,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034754 occipitofrontal fasciculus - + - + - + HBA - + DHBA @@ -702726,7 +702804,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The anterior extremity of the Parahippocampal gyrus is recurved in the form of a hook, the uncus, which is separated from the apex of the temporal lobe by a slight fissure, the incisura temporalis. Although superficially continuous with the hippocampal gyrus, the uncus forms morphologically a part of the rhinencephalon. The term uncus was coined by Felix Vicq dbAzyr (1748b1794). DHBA:12165 FMA:74884 @@ -702741,14 +702819,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034773 uncus of parahippocampal gyrus - + - + DHBA @@ -702784,21 +702862,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:266441267 uberon CA1U UBERON:0034774 uncal CA1 - + - + DHBA @@ -702815,21 +702893,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:266441311 uberon CA2U UBERON:0034775 uncal CA2 - + - + DHBA @@ -702846,21 +702924,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:266441355 uberon CA3U UBERON:0034776 uncal CA3 - + - + DHBA @@ -702877,21 +702955,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11275 uberon CA1R UBERON:0034777 rostral CA1 - + - + DHBA @@ -702908,21 +702986,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11285 uberon CA2R UBERON:0034778 rostral CA2 - + - + DHBA @@ -702939,21 +703017,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11295 uberon CA3R UBERON:0034779 rostral CA3 - + - + DHBA @@ -702970,21 +703048,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11280 uberon CA1C UBERON:0034780 caudal CA1 - + - + DHBA @@ -703001,21 +703079,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11290 uberon CA2C UBERON:0034781 caudal CA2 - + - + DHBA @@ -703032,21 +703110,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:11301 uberon CA3C UBERON:0034782 caudal CA3 - + - + DHBA @@ -704477,8 +704555,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + EHDAA2:0001472 EMAPA:32796 pituitary primordium @@ -704486,24 +704564,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034875 future pituitary gland - + - + - + EMAPA - + Wikipedia @@ -704529,8 +704607,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The outgrowth of neuroectoderm located on the floor of the embryonic hypothalamus that gives rise to the neurohypophysis (posterior lobe) of the pituitary gland. EHDAA2:0004434 EMAPA:16647 @@ -704540,24 +704618,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034876 future neurohypophysis - + - + - + EMAPA - + EMAPA @@ -704694,8 +704772,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + NLX:152661 uberon primary motor cortex lamina 1 @@ -704703,11 +704781,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034888 primary motor cortex layer 1 - + - + @@ -704720,13 +704798,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD - + NIFSTD @@ -704748,7 +704826,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The posterior parietal cortex is a portion of the parietal lobe which manipulates mental images, and integrates sensory and motor portions of the brain. Some sources say that it consists of Brodmann area 5 and Brodmann area 7. Other sources say it is only area 7. DHBA:10214 Wikipedia:Posterior_parietal_cortex @@ -704757,14 +704835,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034889 posterior parietal cortex - + - + DHBA @@ -705027,7 +705105,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:10386 NLX:54921 @@ -705040,14 +705118,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034894 lateral nucleus of stria terminalis - + - + NIFSTD @@ -705088,7 +705166,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:10385 NLX:80623 medial subdivision of BNST @@ -705099,14 +705177,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034895 medial nucleus of stria terminalis - + - + NIFSTD @@ -705141,8 +705219,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + DHBA:266441591 FMA:62071 MBA:892 @@ -705155,24 +705233,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034896 ansa peduncularis - + - + - + FMA - + DHBA @@ -705217,7 +705295,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The thickened ridge of bone that contains the tooth sockets on the premaxilla. AAO:0000397 pars dentalis of premaxilla @@ -705225,14 +705303,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034898 alveolar ridge of premaxilla - + - + AAO @@ -705584,7 +705662,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12184 DMBA:16585 neuronames:1176 @@ -705595,14 +705673,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034910 medial pretectal nucleus - + - + ISBN:0471888893 @@ -705638,7 +705716,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + consider merging with olivary; however, Butler and Hodos treat as distinct within Eutherians DHBA:12187 EMAPA:37920 @@ -705650,14 +705728,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034918 anterior pretectal nucleus - + - + ISBN:0471888893 @@ -705969,7 +706047,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The arcuate artery of the foot (metatarsal artery) arises a little anterior to the lateral tarsal artery; it passes lateralward, over the bases of the metatarsal bones, beneath the tendons of the Extensor digitorum brevis, its direction being influenced by its point of origin; and its anastomoses with the lateral tarsal and lateral plantar arteries. This vessel gives off the second, third, and fourth dorsal metatarsal arteries. It is not present in all individuals. FMA:44594 @@ -705980,14 +706058,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( arcuate artery of foot - + - + FMA @@ -706103,20 +706181,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + the auricular feathers play a role in hearing by reflecting and funneling sound into the external acoustic meatus uberon UBERON:0034930 auricular feather - + - + request more specific terms from PATO @@ -706144,8 +706222,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A pathway of fibers originating in the lateral part of the entorhinal area, perforating the subiculum of the hippocampus, and running into the stratum moleculare of the hippocampus, where these fibers synapse with others that go to the dentate gyrus. (Dorland, 28th ed). DHBA:12080 HBA:265505250 @@ -706164,24 +706242,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034931 perforant path - + - + - + HBA - + DHBA @@ -706343,7 +706421,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Corrugated anterior region of ciliary body where ciliary processes arise. FMA:58431 SCTID:280859006 @@ -706353,14 +706431,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034935 pars plicata of ciliary body - + - + FMA @@ -706388,7 +706466,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Flattened posterior region of ciliary body. FMA:58480 NCIT:C33219 @@ -706399,14 +706477,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034936 pars plana of ciliary body - + - + FMA @@ -707017,7 +707095,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A population of lymphatic endothelial cell precursors that will form the lymph vessels. NCIT:C34262 UMLS:C1514424 @@ -707026,14 +707104,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034953 embryonic lymph sac - + - + VHOG @@ -707217,7 +707295,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An artery that arises from the femoral artery and supplies the abdominal wall. It distributes branches to the superficial subinguinal lymph glands, the superficial fascia, and the integument; it anastomoses with branches of the inferior epigastric, and with its fellow of the opposite side. FMA:20734 @@ -707228,14 +707306,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( superficial epigastric artery - + - + FMA @@ -707401,7 +707479,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nonchromaffin paraganglion located in the wall of the jugular bulb. FMA:50848 MESH:D005924 @@ -707415,14 +707493,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034972 jugular body - + - + cjm @@ -707456,7 +707534,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A cluster of neuroendocrine cells derived from neural crest. Paraganglia may be chromaffin or nonchromaffin. corresponding portion of CL needs fixed FMA:15648 @@ -707467,7 +707545,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034978 paraganglion (generic) - + @@ -707480,7 +707558,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Wikipedia @@ -707529,20 +707607,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + bulb of jugular vein uberon UBERON:0034980 jugular bulb - + - + FMA @@ -707873,7 +707951,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:35125 FMA:77608 MA:0002918 @@ -707887,14 +707965,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034989 amygdalopiriform transition area - + - + MA @@ -707928,8 +708006,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + DMBA:16000 EMAPA:35128 MA:0002920 @@ -707939,24 +708017,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034991 anterior cortical amygdaloid nucleus - + - + - + EMAPA - + DMBA @@ -707972,8 +708050,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + EMAPA:35165 FMA:84344 HBA:4427 @@ -707982,11 +708060,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034993 basal ventral medial nucleus of thalamus - + - + @@ -707999,13 +708077,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA - + EMAPA @@ -708140,7 +708218,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DMBA:15999 EMAPA:35699 MA:0002929 @@ -708155,7 +708233,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0034999 posterolateral cortical amygdaloid nucleus - + @@ -708168,7 +708246,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA @@ -708215,7 +708293,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DMBA:15950 EMAPA:35700 MA:0002930 @@ -708229,7 +708307,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035001 posteromedial cortical amygdaloid nucleus - + @@ -708242,7 +708320,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA @@ -708283,20 +708361,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:35702 uberon UBERON:0035004 preputial swelling - + - + EMAPA @@ -708316,21 +708394,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:29220 uberon prepuce of male UBERON:0035005 preputial swelling of male - + - + EMAPA @@ -708356,21 +708434,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:30478 uberon prepuce of female UBERON:0035006 preputial swelling of female - + - + EMAPA @@ -708396,7 +708474,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -708415,14 +708493,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035007 nasal concha cartilage - + - + ISBN:0073040584 @@ -708766,7 +708844,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12602 EMAPA:37611 MA:0001041 @@ -708779,14 +708857,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035019 inferior olive, beta nucleus - + - + DHBA @@ -709261,8 +709339,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The superior rectal artery (superior hemorrhoidal artery) is an artery that descends into the pelvis to supply blood to the rectum. FMA:14832 @@ -709278,24 +709356,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( superior rectal artery - + - + - + FMA - + FMA @@ -709345,7 +709423,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The deep temporal arteries, two in number, anterior and posterior, ascend between the Temporalis and the pericranium. They supply the muscle, and anastomose with the middle temporal artery. The anterior communicates with the lacrimal artery by means of small branches which perforate the zygomatic bone and great wing of the sphenoid. FMA:49742 SCTID:147965009 @@ -709359,14 +709437,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035041 deep temporal artery - + - + FMA @@ -709418,7 +709496,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The middle temporal artery arises immediately above the zygomatic arch, and, perforating the temporal fascia, gives branches to the Temporalis, anastomosing with the deep temporal branches of the internal maxillary. It occasionally gives off a zygomaticoC6rbital branch, which runs along the upper border of the zygomatic arch, between the two layers of the temporal fascia, to the lateral angle of the orbit. FMA:49666 @@ -709430,14 +709508,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( middle temporal artery - + - + FMA @@ -709507,32 +709585,32 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Deepest layer of olfactory cortex. NLX:152611 uberon UBERON:0035044 olfactory cortex layer 3 - + - + - + nlx - + NIFSTD @@ -710022,7 +710100,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + In Anolis, This muscle mostly originates via fleshy fibers from the ventrolateral aspect of the ilium and the ventral aspect of the transverse processes of Ca1-8 (note: the origin from Ca1 is tendinous). The fibers of m. ischiocaudalis join those of m. cocygeus inferior in the ventral midline at the level of Ca3-4 (in females) and Ca5-6 (in males)[PMID:22753107] M. caudofemoralis brevis @@ -710031,14 +710109,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035082 caudofemoralis brevis - + - + fossa on lower edge of ilium @@ -710845,7 +710923,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The perineal raphe extends from the anus, through the mid-line of the scrotum (scrotal raphe) and upwards through the posterior mid-line aspect of the penis (penile raphe). It is the result of a fetal developmental phenomenon whereby the scrotum (the developmental equivalent of the labia in females) and penis close toward the midline and fuse. The resulting ridge of tissue is evident as the perineal raphe FMA:20244 @@ -710857,14 +710935,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035106 raphe of perineum - + - + Wikipedia @@ -710900,7 +710978,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The temporal fascia covers the Temporalis muscle. It is a strong, fibrous investment, covered, laterally, by the Auricularis anterior and superior, by the galea aponeurotica, and by part of the Orbicularis oculi. The superficial temporal vessels and the auriculotemporal nerve cross it from below upward. Above, it is a single layer, attached to the entire extent of the superior temporal line; but below, where it is fixed to the zygomatic arch, it consists of two layers, one of which is inserted into the lateral, and the other into the medial border of the arch. A small quantity of fat, the orbital branch of the superficial temporal artery, and a filament from the zygomatic branch of the maxillary nerve, are contained between these two layers. It affords attachment by its deep surface to the superficial fibers of the Temporalis. FMA:53996 MFMO:0000105 @@ -710913,14 +710991,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Request new term but the definition needs revision. temporalis fascia - + - + cjm @@ -711123,7 +711201,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:617 mediodorsal nucleus of the thalamus, central part uberon @@ -711131,14 +711209,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035113 central part of mediodorsal nucleus of the thalamus - + - + MBA @@ -711161,7 +711239,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:626 mediodorsal nucleus of the thalamus, lateral part uberon @@ -711169,14 +711247,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035114 lateral part of mediodorsal nucleus of the thalamus - + - + MBA @@ -711669,21 +711747,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:32631 hand cartilage condensation uberon UBERON:0035128 manus cartilage element - + - + EMAPA-modified @@ -711713,21 +711791,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:32657 foot cartilage condensation uberon UBERON:0035129 pes cartilage element - + - + EMAPA-modified @@ -711743,9 +711821,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - - + + + @@ -711765,34 +711843,34 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035130 auditory ossicle endochondral element - + - + - + - + MA - + PMID:11523816 - + PMID:11237469 https://github.com/obophenotype/uberon/wiki/The-neural-crest @@ -712000,20 +712078,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EMAPA:36342 uberon UBERON:0035142 preputial space of male - + - + EMAPA @@ -712922,7 +713000,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Clinical esophageal segment composed of smooth muscle. It corresponds to the inferior part of the lower third topographic segment of the esophagus. FMA:9397 NCIT:C12252 @@ -712938,14 +713016,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035177 abdominal part of esophagus - + - + FMA @@ -712999,7 +713077,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The sigmoid arteries, two or three in number, run obliquely downward and to the left behind the peritoneum and in front of the Psoas major, ureter, and internal spermatic vessels. Their branches supply the lower part of the descending colon, the iliac colon, and the sigmoid or pelvic colon; anastomosing above with the left colic, and below with the superior hemorrhoidal artery. FMA:14830 @@ -713013,14 +713091,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( sigmoid artery - + - + FMA @@ -713122,7 +713200,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The plantar metatarsal arteries (digital branches) are four in number, and run forward between the metatarsal bones and in contact with the Interossei. Each divides into a pair of plantar digital arteries which supply the adjacent sides of the toes. Near their points of division each sends upward an anterior perforating branch to join the corresponding dorsal metatarsal artery. The first plantar metatarsal artery (arteria princeps hallucis) springs from the junction between the lateral plantar and deep plantar arteries and sends a digital branch to the medial side of the first toe. The digital branch for the lateral side of the fifth toe arise from the lateral plantar artery near the base of the fifth metatarsal bone. FMA:43956 NCIT:C52743 @@ -713134,14 +713212,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035195 plantar metatarsal artery - + - + FMA @@ -713216,7 +713294,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A major portion of the greater omentum between the stomach and the transverse colon. FMA:16552 NCIT:C32667 @@ -713226,14 +713304,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035201 gastrocolic ligament - + - + FMA @@ -713428,7 +713506,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Zone of esophagus located in the thorax. FMA:9396 NCIT:C12251 @@ -713442,14 +713520,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035216 thoracic part of esophagus - + - + FMA @@ -713543,7 +713621,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:50488 @@ -713555,14 +713633,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( posterior parietal artery - + - + FMA @@ -713578,7 +713656,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A branch of the middle cerebral artery that supplies blood to the anterior part of the temporal lobe. @@ -713591,7 +713669,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( anterior temporal artery - + @@ -713604,7 +713682,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -713960,7 +714038,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A structure composed of adipose tissue lying above the pubic bone of adult women, anterior to the symphysis pubis. The mons pubis forms the anterior portion of the vulva, and limits the perineal region proximally and anteriorly. In humans, the mons pubis divides into the labia majora on either side of the furrow, known as the cleft of venus, that surrounds the labia minora, clitoris, vaginal opening, and other structures of the vulval vestibule. The fatty tissue of the mons veneris is sensitive to estrogen, causing a distinct mound to form with the onset of puberty. This pushes the forward portion of the labia majora out and away from the pubic bone The size of the mons pubis varies with the general level of hormone and body fat. After puberty it is covered with pubic hair and enlarges. @@ -713976,14 +714054,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035258 mons pubis - + - + FMA @@ -714024,7 +714102,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:50458 NCIT:C33384 @@ -714035,7 +714113,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( posterior temporal artery - + @@ -714048,7 +714126,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -714168,8 +714246,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The superior thoracic artery (highest thoracic artery) is a small vessel normally arising from the first division of the axillary artery, but may arise from the thoracoacromial artery, itself a branch of the second division of the axillary artery. Running forward and medialward along the upper border of the pectoralis minor, the superior thoracic artery passes between it and the pectoralis major to the side of the chest. It supplies branches to the first and second intercostal spaces as well as to the superior portion of serratus anterior. It anastomoses with the internal mammary and intercostal arteries. FMA:22668 @@ -714182,24 +714260,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( superior thoracic artery - + - + - + FMA - + FMA @@ -714341,7 +714419,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An extension of the tissue of the breast which extends into the axilla. FMA:58072 NCIT:C12305 @@ -714357,14 +714435,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035289 axillary tail of breast - + - + ncithesaurus @@ -714475,7 +714553,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An elevated zone of the sella turcica behind the chiasmatic groove[WP,modified]. FMA:54719 NCIT:C45911 @@ -714486,14 +714564,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035298 tuberculum sellae - + - + FMA @@ -715064,7 +715142,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The aspect of the kidney facing the abdominal cavity. FMA:15589 @@ -715077,14 +715155,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035368 anterior surface of kidney - + - + ncithesaurus @@ -715204,7 +715282,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + One of the semi-lunar transverse folds of the rectal wall that protrude into the anal canal. Their use seems to be to support the weight of fecal matter, and prevent its urging toward the anus, which would produce a strong urge to defecate FMA:15722 @@ -715218,14 +715296,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035377 transverse fold of rectum - + - + ncithesaurus @@ -715363,7 +715441,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -715389,14 +715467,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( cystic vein - + - + ncithesaurus @@ -715639,7 +715717,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The diaphragma sellae or sellar diaphragm is the circular fold of dura mater that almost completely roofs the fossa hypophyseos in the sphenoid bone of the skull. It retains the pituitary gland in the fossa hypophyseos, with only the infundibulum of the pituitary gland passing through it. FMA:78540 NCIT:C32459 @@ -715651,14 +715729,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035416 diaphragma sellae - + - + ncithesaurus @@ -715708,8 +715786,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Branch of left coronary artery which runs perpendicular to the anterior interventricular branch of the left coronary artery on the left side of the interventricular sulcus and supplies the left side of the heart. FMA:3895 @@ -715725,24 +715803,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( circumflex branch of left coronary artery - + - + - + FMA - + FMA @@ -715784,7 +715862,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A small triangular process of dura matter beginning at the internal occipital crest just beneath the tentorium and projecting forward. FMA:83974 NCIT:C32584 @@ -715796,14 +715874,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035425 falx cerebelli - + - + ncithesaurus @@ -715846,8 +715924,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The parietal pleura that lines the mediastinum. FMA:9736 NCIT:C94820 @@ -715861,24 +715939,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035431 mediastinal pleura - + - + - + FMA - + FMA @@ -716010,7 +716088,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The lowest part of the prostate gland adjacent to the superior fascia of the urogenital diaphragm. FMA:19594 NCIT:C13087 @@ -716022,14 +716100,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035441 apex of prostate - + - + ncithesaurus @@ -716083,7 +716161,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Muscular components of the deep perineal pouch. consider obsoletion FMA:19734 @@ -716094,7 +716172,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035445 urogenital diaphragm - + @@ -716107,7 +716185,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ncithesaurus @@ -716123,7 +716201,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Clinical esophageal segment composed of skeletal muscle. It corresponds to the superior part of the upper third topographic segment of the esophagus. FMA:9395 NCIT:C12250 @@ -716138,14 +716216,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035450 cervical part of esophagus - + - + FMA @@ -716195,7 +716273,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:64171 NCIT:C32935 SCTID:361949007 @@ -716206,14 +716284,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035453 laryngeal ventricle - + - + ncithesaurus @@ -716235,7 +716313,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The artery that delivers blood to the anterior portion of the parietal lobe. FMA:50485 @@ -716247,14 +716325,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( anterior parietal artery - + - + FMA @@ -716335,7 +716413,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The angled junction where the diaphragm meets the chest wall. FMA:11355 NCIT:C32393 @@ -716347,14 +716425,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035468 costodiaphragmatic recess - + - + ncithesaurus @@ -716764,7 +716842,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Free nerve endings are widely distributed throughout the body, and are found as branches of unmyelinated, or lightly myelinated fibres grouped in bundles beneath the epithelium. As they penetrate the epithelium, they lose their myelin, and branch among the epithelial cells. Branches of one nerve may cover a wide area and overlap the territories of other nerves. The free nerve endings detect pain, touch, pressure and temperature, and are associated with C fibres. FMA:84005 @@ -716777,7 +716855,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035501 unencapsulated tactile receptor - + @@ -716790,7 +716868,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ncithesaurus @@ -717200,7 +717278,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The middle portion of the gallbladder which is distal to the gallbladder neck and proximal to the gallbladder fundus. FMA:14537 NCIT:C32647 @@ -717212,14 +717290,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035536 body of gallbladder - + - + FMA @@ -717258,7 +717336,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Any of several arteries that arise from the aorta and supply blood to the esophagus. FMA:4149 @@ -717272,7 +717350,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( esophageal artery - + @@ -717285,7 +717363,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -717889,21 +717967,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An unjointed, rod-like bony or cartilaginous structures that extend from distal limb joints in tetrapods. in some mammals this is found in a cartilaginous state, and articulates with the lateral border of the carpus. uberon UBERON:0035561 styliform element - + - + DOI:10.1038/nature14423 @@ -717940,7 +718018,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -717959,7 +718037,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035563 magnocellular superficial pretectal nucleus - + @@ -717972,7 +718050,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ZFA @@ -718020,7 +718098,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -718038,7 +718116,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035564 parvocellular superficial pretectal nucleus - + @@ -718051,7 +718129,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ZFA @@ -718091,7 +718169,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -718109,7 +718187,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035565 caudal pretectal nucleus - + @@ -718122,7 +718200,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ZFA @@ -718213,7 +718291,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -718229,7 +718307,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035567 accessory pretectal nucleus - + @@ -718242,7 +718320,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + ZFA @@ -718314,7 +718392,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nucleus medial to the central pretectal nucleus in the periventricular zone. @@ -718328,14 +718406,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Can be subdivided into dorsal and ventral[ISBN:0471888893] periventricular pretectal nucleus - + - + ZFA @@ -718549,7 +718627,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nucleus geniculatus pretectalis @@ -718558,14 +718636,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Receives retinal input nucleus geniculatus of pretectum - + - + ISBN:0471888893 @@ -718594,7 +718672,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nucleus lentiformis mesencephali @@ -718603,14 +718681,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Receives retinal input nucleus lentiformis of pretectum - + - + ISBN:0471888893 @@ -718639,7 +718717,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nucleus posteriodorsalis @@ -718648,14 +718726,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Receives retinal input nucleus posteriodorsalis of pretectum - + - + ISBN:0471888893 @@ -718684,21 +718762,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon nucleus lentiformis thalami UBERON:0035583 nucleus lentiformis thalamus - + - + ISBN:0471888893 @@ -718721,21 +718799,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon ventral pretectal nucleus UBERON:0035584 ventral pretectal nucleus (sauropsida) - + - + ISBN:0471888893 @@ -718757,7 +718835,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + griseum tectalis uberon tectal gray @@ -718765,14 +718843,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035585 tectal gray nucleus (Testudines) - + - + ISBN:0471888893 @@ -718819,19 +718897,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon UBERON:0035587 nucleus pretectalis diffusus - + - + ISBN:0471888893 @@ -718847,20 +718925,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nuclear complex in the ventral pretectal region. uberon UBERON:0035588 subpretectal complex of Aves - + - + ISBN:0471888893 @@ -718910,20 +718988,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon UBERON:0035591 lateral spiriform nucleus - + - + ISBN:0471888893 @@ -718939,19 +719017,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + uberon UBERON:0035592 medial spiriform nucleus - + - + ISBN:0471888893 @@ -718961,20 +719039,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nucleus circularis uberon UBERON:0035593 nucleus circularis of pretectum - + - + ISBN:0471888893 @@ -719053,7 +719131,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of cells located in the central part of the anterior hypothalamic nucleus in the anterior hypothalamic region of the rat ( Swanson-2004 ) and the mouse ( Paxinos-2001 ). Functionally it belongs to the magnocellular neuroendocrine cell groups of the subcortical motor system ( Swanson-2004 ). nucleus circularis MBA:432 @@ -719065,14 +719143,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( group of magnocellular elements arranged in a ring around a capillary bed. The cells are predominantly monopolar, tightly packed, and are flattened at the outer border of the ring. The entire nucleus is surrounded or encapsulated by myelinated fibers, hypothesized to be an osmoreceptor[PMID:974791] circular nucleus of antherior hypothalamic nucleus - + - + MBA @@ -719518,7 +719596,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The innermost layer of the outer root sheath. It contains cells that are morphologically and biochemically different from the inner root sheath and outer root sheath. The cells of the companion layer are more flattened than the other cells of the outer root sheath and do not contain glycogen. In addition, a novel human type II cytokeratin, K6hf, is specifically expressed in the companion layer of the hair follicle BTO:0003970 @@ -719526,14 +719604,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035609 outer root sheath companion layer - + - + BTO @@ -719621,7 +719699,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -719649,14 +719727,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035612 nasal turbinal - + - + ISBN:0073040584 @@ -720170,7 +720248,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -720183,7 +720261,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A branch of the facial nerve that innervates the posterior auricular and intrinsic muscles of the auricle and, through its occipital branch, innervates the occipital belly of the occipitofrontal muscle. FMA:53278 SCTID:280277006 @@ -720194,24 +720272,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035647 posterior auricular nerve - + - + - + Wikipedia - + FMA Wikipedia @@ -720250,7 +720328,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Any nerve that innervates the pinna. EMAPA:36513 MA:0001232 @@ -720259,14 +720337,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035648 nerve innervating pinna - + - + FMA @@ -720697,7 +720775,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0001503 EMAPA:36039 FMA:305888 @@ -720708,14 +720786,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035677 primary yolk sac cavity - + - + EHDAA2 @@ -720858,7 +720936,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0004525 FMA:280884 capillary plexus of liver @@ -720868,14 +720946,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035756 capillary network of liver - + - + EHDAA2 @@ -721008,7 +721086,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0004181 FMA:9464 cardiac chamber cavity @@ -721018,14 +721096,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035763 cavity of cardiac chamber - + - + FMA @@ -721556,7 +721634,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -721570,14 +721648,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035776 accessory ciliary ganglion - + - + http://orcid.org/0000-0001-9114-8737 @@ -721671,8 +721749,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -721693,24 +721771,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035785 telencephalic song nucleus HVC - + - + - + Wikipedia - + GOC:mr @@ -722059,7 +722137,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -722073,7 +722151,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035806 Hensen stripe - + @@ -722086,7 +722164,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + cjm @@ -722114,21 +722192,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A nucleus in the basal ganglion of songbirds. area X uberon UBERON:0035807 area X of basal ganglion - + - + GOC:mr @@ -722147,8 +722225,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A specialized nucleus within the intermediate archistriatum of songbirds, required for and active during the production of learned song. BTO:0003366 uberon @@ -722158,11 +722236,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035808 robust nucleus of arcopallium - + - + @@ -722175,13 +722253,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BTO - + GOC:cjm @@ -722653,8 +722731,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + Artery that runs from right to left along the greater curvature of the stomach, between the layers of the greater omentum, anastomosing with the left gastroepiploic branch of the splenic artery. FMA:14781 @@ -722673,24 +722751,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( right gastroepiploic artery - + - + - + FMA - + FMA @@ -722757,7 +722835,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Artery that runs from left to right along the greater curvature of the stomach, between the layers of the greater omentum, and anastomoses with the right gastroepiploic. FMA:14796 @@ -722777,14 +722855,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( left gastroepiploic artery - + - + FMA @@ -722857,8 +722935,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + @@ -722874,24 +722952,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035831 costal diaphragm - + - + - + PMID:23586979 - + PMID:23586979 @@ -722920,14 +722998,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + - + @@ -722948,24 +723026,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035832 caval sphincter - + - + - + left - + Pinnipedia may also be in whales @@ -723557,7 +723635,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:1070 NLX:157671 uberon @@ -723566,7 +723644,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035872 primary somatosensory area barrel field layer 5 - + @@ -723579,7 +723657,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA NIFSTD @@ -723603,7 +723681,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:981 NLX:157672 uberon @@ -723611,7 +723689,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035873 primary somatosensory area barrel field layer 1 - + @@ -723624,7 +723702,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA NIFSTD @@ -723642,7 +723720,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:201 NLX:157673 uberon @@ -723651,7 +723729,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035874 primary somatosensory area barrel field layer 2/3 - + @@ -723664,7 +723742,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA NIFSTD @@ -723688,7 +723766,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:1062 NLX:157674 uberon @@ -723697,7 +723775,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035875 primary somatosensory area barrel field layer 6b - + @@ -723710,7 +723788,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA NIFSTD @@ -723734,7 +723812,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:1038 NLX:157675 uberon @@ -723743,7 +723821,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035876 primary somatosensory area barrel field layer 6a - + @@ -723756,7 +723834,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA NIFSTD @@ -723780,7 +723858,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:1047 NLX:157676 uberon @@ -723789,7 +723867,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035877 primary somatosensory area barrel field layer 4 - + @@ -723802,7 +723880,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA NIFSTD @@ -723826,21 +723904,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The bone region of the epiphysis that provides underlying mechanical and physiological support for the cartilage of joint articular surfaces. subchondral bone uberon UBERON:0035878 subchondral region of epiphysis - + - + MGI:csmith @@ -724164,14 +724242,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:1011 uberon AUDd UBERON:0035885 dorsal auditory area - + @@ -724184,7 +724262,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724201,14 +724279,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:22 uberon PTLp UBERON:0035886 posterior parietal association areas - + @@ -724221,7 +724299,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724238,14 +724316,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:312782628 uberon VISpor UBERON:0035890 postrhinal area - + @@ -724258,7 +724336,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724275,14 +724353,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:33 uberon VISp6a UBERON:0035892 primary visual area, layer 6a - + @@ -724295,7 +724373,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724312,14 +724390,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:394 uberon VISam UBERON:0035893 anteromedial visual area - + @@ -724332,7 +724410,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724349,14 +724427,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:402 uberon VISal UBERON:0035894 anterolateral visual area - + @@ -724369,7 +724447,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724386,14 +724464,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:409 uberon VISl UBERON:0035895 lateral visual area - + @@ -724406,7 +724484,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724423,14 +724501,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:425 uberon VISpl UBERON:0035897 posterolateral visual area - + @@ -724443,7 +724521,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724460,14 +724538,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:533 uberon VISpm UBERON:0035900 posteromedial visual area - + @@ -724480,7 +724558,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724497,14 +724575,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:721 uberon VISp4 UBERON:0035904 primary visual area, layer 4 - + @@ -724517,7 +724595,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724534,14 +724612,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:778 uberon VISp5 UBERON:0035906 primary visual area, layer 5 - + @@ -724554,7 +724632,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724571,14 +724649,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:821 uberon VISp2/3 UBERON:0035907 primary visual area, layer 2/3 - + @@ -724591,7 +724669,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724608,14 +724686,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:233 uberon VISal5 UBERON:0035908 anterolateral visual area, layer 5 - + @@ -724628,7 +724706,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724645,14 +724723,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:257 uberon VISpm6a UBERON:0035909 posteromedial visual area, layer 6a - + @@ -724665,7 +724743,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724682,14 +724760,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:312782640 uberon VISpor4 UBERON:0035911 postrhinal area, layer 4 - + @@ -724702,7 +724780,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724719,14 +724797,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:417 uberon VISrl UBERON:0035912 rostrolateral visual area - + @@ -724739,7 +724817,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724756,14 +724834,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:433 uberon VISam5 UBERON:0035913 anteromedial visual area, layer 5 - + @@ -724776,7 +724854,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724793,14 +724871,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:501 uberon VISpm4 UBERON:0035914 posteromedial visual area, layer 4 - + @@ -724813,7 +724891,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724830,14 +724908,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:573 uberon VISl4 UBERON:0035915 lateral visual area, layer 4 - + @@ -724850,7 +724928,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724867,14 +724945,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:613 uberon VISl5 UBERON:0035916 lateral visual area, layer 5 - + @@ -724887,7 +724965,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724904,14 +724982,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:678 uberon AUDd4 UBERON:0035917 dorsal auditory area, layer 4 - + @@ -724924,7 +725002,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724941,14 +725019,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:74 uberon VISl6a UBERON:0035918 lateral visual area, layer 6a - + @@ -724961,7 +725039,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -724978,14 +725056,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:869 uberon VISpl4 UBERON:0035919 posterolateral visual area, layer 4 - + @@ -724998,7 +725076,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -725015,14 +725093,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:312782616 uberon VISrl5 UBERON:0035920 rostrolateral area, layer 5 - + @@ -725035,7 +725113,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -725122,7 +725200,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The spreading out of the fibers of the corpus callosum in the centrum semiovale of each cerebral hemisphere. DHBA:12026 FMA:77693 @@ -725139,7 +725217,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035924 radiation of corpus callosum - + @@ -725152,7 +725230,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -725209,7 +725287,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:13227 FMA:83779 HBA:9399 @@ -725235,7 +725313,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035925 central sulcus of insula - + @@ -725248,7 +725326,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -725558,7 +725636,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12082 FMA:277107 HBA:265505286 @@ -725567,7 +725645,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035931 sagittal stratum - + @@ -725580,7 +725658,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA @@ -725597,8 +725675,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + FMA:273508 HBA:4071 @@ -725611,11 +725689,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( anterior segment of paracentral lobule - + - + @@ -725628,13 +725706,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA - + FMA @@ -725669,8 +725747,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The junction of the precentral gyrus and postcentral gyrus on the medial surface of the cerebral cortex. It lies across the boundary between the frontal lobe and the parietal lobe. BTO:0005601 FMA:77534 @@ -725684,11 +725762,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035933 paracentral lobule - + - + @@ -725701,13 +725779,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BTO - + FMA @@ -725730,8 +725808,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + FMA:273511 HBA:4125 posterior part of paracentral lobule @@ -725740,11 +725818,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035934 posterior segment of paracentral lobule - + - + @@ -725757,13 +725835,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA - + FMA @@ -725842,8 +725920,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The arcuate fasciculus (Latin, curved bundle) is the neural pathway connecting the posterior part of the temporoparietal junction with the frontal cortex in the brain and is now considered as part of the Superior longitudinal fasciculus. DHBA:10569 FMA:276650 @@ -725862,24 +725940,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035937 arcuate fasciculus - + - + - + FMA - + DHBA @@ -725947,7 +726025,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12728 FMA:72611 HBA:265505538 @@ -725962,7 +726040,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035938 amiculum of inferior olive - + @@ -725975,7 +726053,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -726050,7 +726128,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:70663 HBA:9588 neuronames:729 @@ -726066,7 +726144,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035940 central medullary reticular nuclear complex - + @@ -726079,7 +726157,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -726386,7 +726464,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The lumen of the epididymis. FMA:18274 SCTID:367722009 @@ -726396,14 +726474,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035956 epididymal lumen - + - + FMA @@ -726563,7 +726641,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Supravaginal portion of cervix: the part of the cervix uteri that does not protrude into the vagina. BTO:0001851 @@ -726573,14 +726651,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035962 supravaginal part of cervix - + - + FMA @@ -726750,7 +726828,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The perforated part of the sclera through which pass the axons of the retinal ganglion cells. BTO:0004277 @@ -726764,7 +726842,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( scleral lamina cribrosa - + @@ -726777,7 +726855,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + BTO @@ -726813,8 +726891,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + The mucous membrane apical to the attached gingiva. BTO:0004046 FMA:289360 @@ -726822,24 +726900,24 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035967 alveolar mucosa - + - + - + BTO - + BTO @@ -726985,7 +727063,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + On the medial wall of the posterior cornu of the lateral ventricle is a longitudinal eminence, the calcar avis (hippocampus minor), which is an involution of the ventricular wall produced by the calcarine fissure. It is sometimes visible on ultrasonogram. BTO:0004691 DHBA:12095 @@ -727008,14 +727086,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035970 calcar avis of the lateral ventricle - + - + BTO @@ -727099,7 +727177,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Division of subicular cortex characterized by projections from the anterodorsal thalamic nucleus and to a lesser extent the anteroventral nucleus, bordered ventrally and laterally by the presubiculum and dorsally and medially by the retrosplenial granular a cortex.. The border is characterized by an abrupt change in the cyto- and chemoarchitecture. MBA:1037 NLX:144245 @@ -727110,7 +727188,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035971 postsubiculum - + @@ -727123,7 +727201,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA @@ -727152,8 +727230,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + A group of nerve cells that bridges the midline of the thalamus between the anterodorsal nucleus of the thalamus of the left and right sides. According to Crosby (1962), it is more developed and consistently present in rodents than in primates (adapted from Brain Info). MBA:1113 NLX:144468 @@ -727169,11 +727247,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035972 interanterodorsal nucleus of the thalamus - + - + @@ -727186,13 +727264,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD - + MBA @@ -727341,7 +727419,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:263 NLX:17240 neuronames:1813 @@ -727351,7 +727429,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035974 anteroventral preoptic nucleus - + @@ -727364,7 +727442,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -727388,7 +727466,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + MBA:27 NLX:144470 neuronames:1956 @@ -727400,7 +727478,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035975 intergeniculate leaflet of the lateral geniculate complex - + @@ -727413,7 +727491,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + NIFSTD @@ -727448,7 +727526,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A small cluster of neurons in the pontine reticular formation in some mammals, containing the majority of motoneurons innervating thenretractor bulbi muscles of the eye. MBA:568 NLX:144454 @@ -727458,7 +727536,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0035976 accessory abducens nucleus - + @@ -727471,7 +727549,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + nlx-text-mined @@ -727827,7 +727905,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A group of cells that fluoresce for dopamine and are distributed in clusters that, in the primate, are ventral and medial to the mammillothalamic tract of the hypothalamus; a few extend into the reuniens nucleus of the thalamus (Felten-1983). In the mouse A13 is located ventral to the mammillothalamic tract of the thalamus in the zona incerta (adapted from Brain Info). MBA:796 NLX:91101 @@ -727841,14 +727919,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036007 A13 dopaminergic cell group - + - + MBA @@ -728020,7 +728098,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA:9483 MBA:580 NLX:144476 @@ -728034,7 +728112,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036012 nucleus of the brachium of the inferior colliculus - + @@ -728047,7 +728125,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -728088,7 +728166,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -728120,7 +728198,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( intergluteal cleft - + @@ -728132,7 +728210,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + 2 @@ -728422,7 +728500,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12389 HBA:4730 uberon @@ -728431,7 +728509,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036043 paravermic lobule X - + @@ -728444,7 +728522,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -728467,7 +728545,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA:12846 HBA:4706 VIIAf @@ -728477,7 +728555,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036044 cerebellum vermis lobule VIIAf - + @@ -728490,7 +728568,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + HBA @@ -728538,8 +728616,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + DHBA:12847 HBA:4707 VIIAt @@ -728549,11 +728627,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036065 cerebellum vermis lobule VIIAt - + - + @@ -728566,13 +728644,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA - + HBA @@ -728708,7 +728786,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + One of two longitudinal ridges that develop caudal to the pharynx and fuses to give rise to the tracheoesophageal septum. NCIT:C34315 esophagotracheal fold @@ -728716,14 +728794,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036069 tracheoesophageal fold - + - + Wikipedia:Laryngotracheal_groove @@ -728846,20 +728924,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0004070 uberon UBERON:0036072 respiratory primordium epithelium - + - + EHDAA2 @@ -728879,21 +728957,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + EHDAA2:0004071 respiratory primordium associated mesenchyme uberon UBERON:0036073 respiratory primordium mesenchyme - + - + EHDAA2 @@ -728909,9 +728987,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - - + + + A vein that leaves the vestibule through an individual bone canal running parallel to the vestibular aqueduct up to the dura of the posterior side of the petrosa in the area of the endolymphatic sac. It then opens in the inferior petrosal sinus or the jugular bulb. The vein receives other branches from the bone, dura and sac. FMA:52367 @@ -728922,34 +729000,34 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( vein of vestibular aqueduct - + - + - + - + FMA - + FMA - + FMA @@ -728978,7 +729056,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The meningeal branch of the mandibular nerve (recurrent branch, nervus spinosus) is a branch of the mandibular nerve that supplies the dura mater. FMA:53047 SCTID:280249002 @@ -728991,14 +729069,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036143 meningeal branch of mandibular nerve - + - + FMA @@ -729183,21 +729261,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + . uberon UBERON:0036148 orovelar muscle - + - + to be checked @@ -729436,7 +729514,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A rostral part of the parahippocampal gyrus. Some authors regard it as part of the gyrus underlying the uncus ( Ture-1999 ), others as a synonym for limen insula. DHBA:12166 @@ -729449,7 +729527,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036164 ambient gyrus - + @@ -729462,7 +729540,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DHBA @@ -730075,7 +730153,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The tympanic nerve (nerve of Jacobson) is a branch of the glossopharyngeal nerve found near the ear. FMA:53480 SCTID:280289008 @@ -730089,14 +730167,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036216 tympanic nerve - + - + FMA @@ -730173,7 +730251,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The most anterior region of the forebrain including both the telencephalon and the hypothalamus in the prosomeric model. DMBA:15567 uberon @@ -730182,7 +730260,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( may contain the optic recess region (ORR) in the new model proposed by Yamamoto et al. 2017 (see https://www.ncbi.nlm.nih.gov/pubmed/28470718) secondary prosencephalon - + @@ -730195,7 +730273,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + DMBA DOI:10.1111/dgd.12348 @@ -730266,7 +730344,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The corticobulbar and corticospinal tracts combined. pyramidal tract Wikipedia:Pyramidal_tracts @@ -730274,14 +730352,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036224 corticobulbar and corticospinal tracts - + - + NIFSTD @@ -730969,7 +731047,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The upper part of the larynx, including the epiglottis; the area above the vocal cords. FMA:55476 NCIT:C12279 @@ -730980,14 +731058,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036263 supraglottic part of larynx - + - + FMA @@ -731336,7 +731414,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The anterior and posterior borders of the tonsillar fossa. They are composed of muscle tissue. NCIT:C12236 uberon @@ -731344,14 +731422,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Consider merge with palatopharyngeus tonsillar pillar - + - + NCIT @@ -731378,7 +731456,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Wall of ventricle which is continuous with the wall of aorta. FMA:9556 left ventricular wall @@ -731386,7 +731464,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036285 wall of left ventricle - + @@ -731399,7 +731477,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -731432,7 +731510,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Wall of ventricle which is continuous with the wall of pulmonary trunk. FMA:9533 right ventricular wall @@ -731440,7 +731518,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036286 wall of right ventricle - + @@ -731453,7 +731531,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -731485,20 +731563,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:9560 uberon UBERON:0036288 anterior wall of left ventricle - + - + FMA @@ -731709,7 +731787,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The upper tract of the renal system. The renal pelvis is the large cavity in the middle of each kidney. Urine drains from each kidney through a long tube called the ureter, into the bladder, where it is stored until it is passed from the body through the urethra. NCIT:C54419 renal pelvis and ureter @@ -731718,14 +731796,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036295 renal pelvis/ureter - + - + NCIT @@ -731878,14 +731956,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:14179 coronary arterial wall uberon UBERON:0036328 wall of coronary artery - + @@ -731898,7 +731976,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -731925,8 +732003,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + FMA:14621 appendix wall wall of vermiform appendix @@ -731934,11 +732012,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036337 wall of appendix - + - + @@ -731951,13 +732029,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA - + FMA @@ -731990,14 +732068,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:14657 gallbladder wall uberon UBERON:0036343 wall of gallbladder - + @@ -732010,7 +732088,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732037,14 +732115,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:15089 brachiocephalic arterial wall uberon UBERON:0036351 wall of brachiocephalic artery - + @@ -732057,7 +732135,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732084,14 +732162,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:15090 subclavian arterial wall uberon UBERON:0036352 wall of subclavian artery - + @@ -732104,7 +732182,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732135,19 +732213,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - + + FMA:15704 anal canal wall uberon UBERON:0036362 wall of anal canal - + - + @@ -732160,13 +732238,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA - + FMA @@ -732193,14 +732271,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:15889 right ureteral wall uberon UBERON:0036375 wall of right ureter - + @@ -732213,7 +732291,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732240,7 +732318,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:15890 left ureteral wall @@ -732249,7 +732327,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( wall of left ureter - + @@ -732262,7 +732340,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732289,14 +732367,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:18211 pulmonary arterial wall uberon UBERON:0036422 wall of pulmonary artery - + @@ -732309,7 +732387,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732336,7 +732414,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:18303 uterine tube wall wall of fallopian tube @@ -732345,7 +732423,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0036441 wall of uterine tube - + @@ -732358,7 +732436,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732397,14 +732475,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:19779 urethral wall uberon UBERON:0036521 wall of urethra - + @@ -732417,7 +732495,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732444,14 +732522,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:19971 vaginal wall uberon UBERON:0036523 wall of vagina - + @@ -732464,7 +732542,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732491,13 +732569,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:231590 uberon UBERON:0036553 wall of synovial tendon sheath - + @@ -732510,7 +732588,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732531,13 +732609,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:242772 uberon UBERON:0036654 wall of lateral ventricle - + @@ -732550,7 +732628,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732571,13 +732649,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:242774 uberon UBERON:0036655 wall of cerebral aqueduct - + @@ -732590,7 +732668,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732611,13 +732689,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:242776 uberon UBERON:0036656 wall of third ventricle - + @@ -732630,7 +732708,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732651,13 +732729,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:242778 uberon UBERON:0036657 wall of fourth ventricle - + @@ -732670,7 +732748,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732691,14 +732769,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:242780 wall of central canal uberon UBERON:0036658 wall of central canal of spinal cord - + @@ -732711,7 +732789,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732738,13 +732816,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:242841 uberon UBERON:0036661 wall of ventricular system of brain - + @@ -732757,7 +732835,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732778,14 +732856,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:58098 eyeball wall uberon UBERON:0036925 wall of eyeball - + @@ -732798,7 +732876,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732825,14 +732903,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:60069 pharyngotympanic tube wall uberon UBERON:0036990 wall of pharyngotympanic tube - + @@ -732845,7 +732923,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732872,14 +732950,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:63144 orbit wall uberon UBERON:0037089 wall of orbit - + @@ -732892,7 +732970,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732919,14 +732997,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:66284 common carotid arterial wall uberon UBERON:0037094 wall of common carotid artery - + @@ -732939,7 +733017,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -732966,9 +733044,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - - - + + + Wall of organ which has as its parts the endocardium, myocardium , epicardium, and the cardiac septum, surrounded by the pericardial sac proper and is continuous with the walls of the systemic and pulmonary arterial and venous trees. FMA:7274 cardiac wall @@ -732976,15 +733054,15 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0037144 wall of heart - + - + - + @@ -732997,19 +733075,19 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA - + FMA - + FMA @@ -733042,14 +733120,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:79837 membranous labyrinth wall uberon UBERON:0037191 wall of membranous labyrinth - + @@ -733062,7 +733140,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -733089,14 +733167,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:85375 lacrimal ductal wall uberon UBERON:0037237 wall of lacrimal duct - + @@ -733109,7 +733187,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -733136,14 +733214,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:19676 male urethral wall uberon UBERON:0037447 wall of male urethra - + @@ -733156,7 +733234,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -733183,14 +733261,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:19780 female urethral wall uberon UBERON:0037455 wall of female urethra - + @@ -733203,7 +733281,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -733430,14 +733508,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The part of the human abdomen below the ribs and above the hips, often narrower than the areas above and below. FMA:228775 uberon UBERON:0037468 waist - + @@ -733450,7 +733528,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + https://orcid.org/0000-0002-2825-0621 @@ -734372,7 +734450,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Gastric lymph node located along the lesser curvature of stomach. FMA:12797 aJCC level 17L node @@ -734381,14 +734459,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0037580 left gastric lymph node - + - + FMA @@ -735707,14 +735785,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Hepatic lymph node located along the common hepatic artery. FMA:277259 uberon UBERON:0038691 common hepatic lymph node - + @@ -735727,7 +735805,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -735817,7 +735895,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Superior pancreatic lymph node located along the proximal segment of splenic artery. FMA:277295 jPS 11p node @@ -735828,7 +735906,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0038695 proximal superior pancreatic lymph node - + @@ -735841,7 +735919,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -737438,14 +737516,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:61235 thyroid node uberon UBERON:0038931 thyroid lymph node - + @@ -737458,7 +737536,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -737936,7 +738014,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The anterior intercostal branches of internal thoracic artery supply the upper five or six intercostal spaces. FMA:10641 intercostal branch of internal thoracic artery @@ -737944,14 +738022,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0039169 anterior intercostal artery - + - + FMA @@ -737973,21 +738051,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10648 medial mammary branch of perforating branch of internal thoracic artery uberon UBERON:0039170 mammary branch of internal thoracic artery - + - + FMA @@ -738067,21 +738145,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A lower continuation of the vertebral vein and vertebral venous plexus that passes through the foramen of the transverse process of the 7th cervical vertebra and empties into the brachiocephalic vein. FMA:14290 uberon UBERON:0039185 accessory vertebral vein - + - + FMA @@ -738128,21 +738206,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The suprascapular vein is a vein running above the scapula. It empties into the external jugular vein. FMA:14319 uberon UBERON:0039187 suprascapular vein - + - + FMA @@ -738158,21 +738236,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The superior laryngeal vein is a vein which drains the larynx into the superior thyroid vein. FMA:14324 uberon UBERON:0039188 superior laryngeal vein - + - + FMA @@ -738188,7 +738266,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -738202,14 +738280,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0039215 appendicular artery - + - + FMA @@ -738241,7 +738319,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + An artery that supplies oxygenated blood to the cystic duct. FMA:14835 cholecystic artery @@ -738249,14 +738327,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0039222 cystic artery - + - + FMA Wikipedia @@ -738290,20 +738368,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:15395 uberon UBERON:0039228 sigmoid vein - + - + FMA @@ -738378,7 +738456,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + vein ascending the posterior aspect of the body of the pubis to drain into the inferior epigastric vein; this vein frequently (about 20% of patients) serves as an accessory or replaced obturator vein. FMA:21200 accessory obturator vein @@ -738388,14 +738466,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0039256 pubic vein - + - + FMA @@ -738467,20 +738545,20 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:70346 uberon UBERON:0039260 thyrocervical artery - + - + FMA @@ -738656,21 +738734,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:20886 posterior labial branch of internal pudendal artery uberon UBERON:0039351 posterior labial artery - + - + FMA @@ -738726,7 +738804,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:21267 bulb of penis vein vena bulbi penis @@ -738734,14 +738812,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:0039376 penile bulb vein - + - + FMA @@ -738773,21 +738851,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A vein that drains the urethra. FMA:21270 uberon UBERON:0039377 urethral vein - + - + FMA @@ -738813,21 +738891,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:21273 vena bulbi vestibuli uberon UBERON:0039379 vestibular bulb vein - + - + FMA @@ -738880,7 +738958,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -738893,31 +738971,31 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + A vein that drains the prepuce and skin of the penis, and, running backward in the subcutaneous tissue, inclines to the right or left, and opens into the corresponding superficial external pudendal vein, a tributary of the great saphenous vein.. FMA:21384 uberon UBERON:0039421 superficial dorsal vein of penis - + - + - + FMA - + FMA @@ -738976,13 +739054,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10649 uberon UBERON:0039838 seventh anterior intercostal artery - + @@ -738995,7 +739073,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -739005,13 +739083,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10650 uberon UBERON:0039839 eighth anterior intercostal artery - + @@ -739024,7 +739102,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -739034,13 +739112,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10651 uberon UBERON:0039840 ninth anterior intercostal artery - + @@ -739053,7 +739131,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -739063,14 +739141,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10652 first intercostal branch of internal thoracic artery uberon UBERON:0039841 first anterior intercostal artery - + @@ -739083,7 +739161,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -739099,14 +739177,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10653 second intercostal branch of internal thoracic artery uberon UBERON:0039842 second anterior intercostal artery - + @@ -739119,7 +739197,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -739135,14 +739213,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10654 third intercostal branch of internal thoracic artery uberon UBERON:0039843 third anterior intercostal artery - + @@ -739155,7 +739233,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -739171,14 +739249,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10655 fourth intercostal branch of internal thoracic artery uberon UBERON:0039844 fourth anterior intercostal artery - + @@ -739191,7 +739269,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -739207,14 +739285,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10656 fifth intercostal branch of internal thoracic artery uberon UBERON:0039845 fifth anterior intercostal artery - + @@ -739227,7 +739305,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -739243,14 +739321,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10657 sixth intercostal branch of internal thoracic artery uberon UBERON:0039846 sixth anterior intercostal artery - + @@ -739263,7 +739341,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -739279,21 +739357,21 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA:10663 transverse scapular artery uberon UBERON:0039847 suprascapular artery - + - + FMA @@ -739344,6 +739422,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + + + + + + + FMA:13279 anterior bronchopulmonary segment of left pulmonary artery anterior segmental artery of left lung @@ -739427,14 +739512,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + Ovarian vein, each instance of which is a tributary of some inferior vena cava that drains the right pampiniform plexus of some broad ligament. FMA:14342 uberon UBERON:0039856 right ovarian vein - + @@ -739447,7 +739532,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + FMA @@ -739788,7 +739873,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -739812,14 +739897,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( mole - + - + ZFA @@ -740224,7 +740309,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + @@ -740246,7 +740331,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( UBERON:1000022 Zymbal's gland - + @@ -740260,7 +740345,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + cjm @@ -740302,7 +740387,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - + The parenchyma of the spleen, consisting of lymphocytes and macrophages. It lies between the splenic trabecula. Red pulp is the part suffused with blood and white pulp consists of areas of lymphatic tissue where there are sleeves of lymphocytes and macrophages. EMAPA:35805 @@ -740319,14 +740404,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( spleen pulp - + - + FMA @@ -741539,7 +741624,7 @@ Seems out of scope for uberon and/or not very useful as a class. - + Elastoidin fin ray that is slender, sometimes branched distally and present in the embryonic fin fold. Actinotrichia are translucent and exhibit birefringence. This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0000089 @@ -741550,14 +741635,14 @@ Seems out of scope for uberon and/or not very useful as a class. Actinotrichia are required for lepidotrichium development. They are occasionally retained in adult fishes. Further taxon comments from Witten & Huysseune (2007): 'Actinotrichia are found in the embryonic fin fold, along the outer edge of the fin in Actinopterygii, and in the adipose fin in teleosts (Starck 1979; Géraudie and Meunier 1982; Becerra et al. 1983). Only in polypterids has their presence been reported in the joints between adjacent lepidotrichial elements (Géraudie 1988). In the sarcopterygian lineage, actinotrichia are present in coelacanths (Géraudie and Meunier 1980) and in young dipnoans (Arratia et al. 2001).' actinotrichium - + - + PHENOSCAPE:pm @@ -749318,8 +749403,8 @@ Seems out of scope for uberon and/or not very useful as a class. - - + + Hindbrain nucleus in the tegmental region of rhombomere 1. The cells of the nucleus are granular and lie at the ventral border of the cerebellum and brain stem. This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon TAO:0000551 @@ -749328,24 +749413,24 @@ Seems out of scope for uberon and/or not very useful as a class. UBERON:2000551 nucleus lateralis valvulae - + - + - + ZFA - + michaelerice PMID:2040726 @@ -750217,8 +750302,8 @@ Seems out of scope for uberon and/or not very useful as a class. - - + + Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain. This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon TAO:0000603 @@ -750229,24 +750314,24 @@ Seems out of scope for uberon and/or not very useful as a class. UBERON:2000603 valvula cerebelli - + - + - + ZFA - + michaelerice PMID:2040726 @@ -755068,7 +755153,7 @@ Not clear that directional labels for optic tract parts are consistent across ta - + @@ -755085,14 +755170,14 @@ Not clear that directional labels for optic tract parts are consistent across ta nucleus of medial longitudinal fasciculus of medulla - + - + ZFA @@ -760798,7 +760883,7 @@ Seems out of scope for uberon and/or not very useful as a class. - + @@ -760814,14 +760899,14 @@ Seems out of scope for uberon and/or not very useful as a class. UBERON:2001053 future internal carotid artery - + - + EHDAA2 @@ -763136,7 +763221,7 @@ Seems out of scope for uberon and/or not very useful as a class. - + @@ -763150,14 +763235,14 @@ Seems out of scope for uberon and/or not very useful as a class. UBERON:2001200 corpuscles of Stannius - + - + http://jeb.biologists.org/content/177/1/243.short @@ -805369,14 +805454,14 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - - + + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Logical definition added by cjm. uberon UBERON:3000519 pseudodentary tooth - + @@ -805385,20 +805470,20 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + - + cjm - + cjm @@ -806603,14 +806688,14 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - - + + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Logical definition added by cjm uberon UBERON:3000642 maxillopalatine tooth - + @@ -806619,20 +806704,20 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + - + cjm - + cjm @@ -820499,7 +820584,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + @@ -820512,14 +820597,14 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol UBERON:3010620 dilatator laryngis - + - + cjm @@ -820907,21 +820992,21 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + Hyobranchial muscle used in swallowing. This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010650 cephalodorsosubpharyngeus - + - + cjm @@ -830363,7 +830448,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - + @@ -830385,14 +830470,14 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol UBERON:4200121 puboischiotibialis muscle - + - + ISBN:0073040584 @@ -841896,7 +841981,7 @@ formulas. Modified from Cooper and Dawson 2009. - + Head segment derived from the second embryonic segment (between the labral and antennal segments). In the larva, this segment includes Bolwig's organ. FBbt:00000005 @@ -841905,14 +841990,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6000005 insect ocular segment - + - + cjm @@ -842399,32 +842484,32 @@ formulas. Modified from Cooper and Dawson 2009. - - + + FBbt:00000104 uberon ventral plate UBERON:6000104 insect mesoderm anlage - + - + - + cjm - + https://github.com/obophenotype/uberon/issues/2050 @@ -842491,7 +842576,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -842507,14 +842592,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6000128 insect trunk mesoderm - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -842542,20 +842627,20 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt:00000130 uberon UBERON:6000130 insect visceral mesoderm - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -842571,19 +842656,19 @@ formulas. Modified from Cooper and Dawson 2009. - + uberon UBERON:6000131 insect mesodermal crest - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -842599,19 +842684,19 @@ formulas. Modified from Cooper and Dawson 2009. - + uberon UBERON:6000132 insect mesodermal crest of segment T3 - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -842671,21 +842756,21 @@ formulas. Modified from Cooper and Dawson 2009. - + Any insect segment that is part of some embryo. FBbt:00000154 uberon UBERON:6000154 insect embryonic segment - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -843263,14 +843348,14 @@ formulas. Modified from Cooper and Dawson 2009. - + Section of the insect foregut anterior to the esophagus. FBbt:00005380 uberon UBERON:60005380 insect pharynx - + @@ -843289,7 +843374,7 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt @@ -843923,7 +844008,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -843936,14 +844021,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6001722 insect ring gland - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -845077,7 +845162,6 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 CL:0000373 - FBbt:00001789 uberon UBERON:6001789 Obsoleted as this represents a cell type and therefore belongs to CL. @@ -845117,7 +845201,6 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 UBERON:6001790 - FBbt:00001791 uberon UBERON:6001791 Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. @@ -845132,7 +845215,6 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 UBERON:6001790 - FBbt:00001792 uberon UBERON:6001792 Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. @@ -845147,7 +845229,6 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 UBERON:6001790 - FBbt:00001809 uberon UBERON:6001809 Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. @@ -845538,20 +845619,20 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt:00003006 uberon UBERON:6003006 insect adult segment - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -847353,21 +847434,21 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt:00005168 sensillum uberon UBERON:6005168 insect external sensory organ - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -847588,21 +847669,21 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt:00005436 uberon Asn/A TrMes UBERON:6005436 insect trunk mesoderm anlage - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -847835,7 +847916,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -847851,14 +847932,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6005541 insect cardiogenic mesoderm - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -848867,7 +848948,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -848879,14 +848960,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6026000 insect trunk mesoderm derivative - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -848902,7 +848983,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -848914,14 +848995,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6026002 insect visceral mesoderm derivative - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -850713,6 +850794,7 @@ formulas. Modified from Cooper and Dawson 2009. + @@ -851667,8 +851749,8 @@ formulas. Modified from Cooper and Dawson 2009. - - + + A collection of Purkinje fibers that receives signals from the right and left bundle branches and innervates the ventricular cardiac muscle. The Purkinje fiber network creates synchronized contractions of the heart ventricles. Purkinje fibre network @@ -851676,11 +851758,11 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8000009 Purkinje fiber network - + - + @@ -851695,7 +851777,7 @@ formulas. Modified from Cooper and Dawson 2009. - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -851703,7 +851785,7 @@ formulas. Modified from Cooper and Dawson 2009. - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -852146,7 +852228,7 @@ formulas. Modified from Cooper and Dawson 2009. - + The region of the hepatic acinus that is closest to the arterial blood supply and has the highest oxygen concentration. Zone 1 is located in the periportal region of the liver lobule, closest to the portal triad. Hepatocytes in this region are primarily involved in oxidative energy metabolism. @@ -852156,14 +852238,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400001 hepatic acinus zone 1 - + - + PMID:28126520 @@ -852192,7 +852274,7 @@ formulas. Modified from Cooper and Dawson 2009. - + The region of the hepatic acinus immediately surrounding the central veins. This region has the lowest oxygen concentration in the acinus. Zone 3 is located in the centrilobular region of the liver lobule, closest to the central vein. Hepatocytes in this region are the primary location for the biotransformation of drugs. @@ -852204,14 +852286,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400002 hepatic acinus zone 3 - + - + PMID:28126520 @@ -852252,7 +852334,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -852274,14 +852356,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400003 hepatic acinus zone 2 - + - + PMID:28126520 @@ -852345,7 +852427,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -852361,14 +852443,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400006 liver lobule periportal region - + - + PMID:28126520 @@ -852397,7 +852479,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -852413,14 +852495,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400007 liver lobule centrilobular region - + - + PMID:28126520 @@ -852449,7 +852531,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -852471,14 +852553,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400008 liver lobule midzonal region - + - + PMID:28126520 @@ -855735,7 +855817,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -855797,7 +855879,7 @@ formulas. Modified from Cooper and Dawson 2009. Brodmann (1909) area 17 http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png - + @@ -855816,7 +855898,7 @@ formulas. Modified from Cooper and Dawson 2009. - + WP @@ -860524,6 +860606,137 @@ formulas. Modified from Cooper and Dawson 2009. + + + + + + + + + + + + A hyaline articular cartilage that covers the head of femur. Provides cushioning, softness and low friction for the hip joint. + + 2023-05-30T06:34:18Z + uberon + UBERON:8480062 + femoral head cartilage + + + + + A hyaline articular cartilage that covers the head of femur. Provides cushioning, softness and low friction for the hip joint. + PMID:29262200 + PMID:36292459 + + + + + + + + + + + + + + + + + + + + + The dorsal part of the iris. In urodeles (newts and salamanders) the dorsal iris is involved in lens regeneration in a process named Wolffian lens regeneration. + In urodeles, lens regeneration proceeds through two steps. The first step involves the entire circumference of the iris pigmented epithelium. The second step is confined to the pigmented epithelial cells located along the dorsal rim of the iris and involves dorsal-specific activation of the Wnt signaling pathway. + + 2023-06-06T08:06:04Z + dorsal rim of the iris + uberon + UBERON:8480063 + dorsal iris + + + + + The dorsal part of the iris. In urodeles (newts and salamanders) the dorsal iris is involved in lens regeneration in a process named Wolffian lens regeneration. + PMID:17030116 + PMID:29579253 + + + + + dorsal rim of the iris + PMID:29579253 + + + + + + + + + The labial gland is one of the minor salivary glands, located mainly under the mucosal epithelium of the upper and lower lip and within the orbicularis oris muscle fibers. The labial gland secrete mucous and serous substances to maintain oral health. In particular, the inferior labial gland not only promotes moisturization in the oral cavity but also secretes substances with antibacterial effects. + + 2023-06-19T12:41:05Z + BTO:0001548 + labial minor salivary gland + labial salivary gland + uberon + UBERON:8480065 + labial gland + + + + + The labial gland is one of the minor salivary glands, located mainly under the mucosal epithelium of the upper and lower lip and within the orbicularis oris muscle fibers. The labial gland secrete mucous and serous substances to maintain oral health. In particular, the inferior labial gland not only promotes moisturization in the oral cavity but also secretes substances with antibacterial effects. + PMID:34422599 + + + + + labial minor salivary gland + PMID:34274288 + + + + + labial salivary gland + FMA:59792 + NCIT:C32904 + + + + + + + + + + + + + + + The region in the upper part of the back between the shoulder blades. + + 2023-06-23T09:06:25Z + uberon + UBERON:8480066 + interscapular region + + + + + The region in the upper part of the back between the shoulder blades. + https://orcid.org/0000-0002-0819-0473 + + + + @@ -862273,6 +862486,106 @@ formulas. Modified from Cooper and Dawson 2009. + + + + + + + + + + + An anatomical point on the most lateral point of the neurocranium. + + uberon + UBERON:8500001 + euryon + + + + + An anatomical point on the most lateral point of the neurocranium. + ISBN:9780873659505 + + + + + + + + + + + + + + + A bony elongated opening located above the orbit and under the forehead. + + uberon + UBERON:8500002 + supraorbital foramen + + + + + A bony elongated opening located above the orbit and under the forehead. + https://en.wikipedia.org/wiki/Supraorbital_foramen + + + + + + + + + + + + + + + An anatomical point on the median point of the line joining the aboral borders of the supraorbital foramen. + + uberon + UBERON:8500003 + supraorbitale + + + + + An anatomical point on the median point of the line joining the aboral borders of the supraorbital foramen. + ISBN:9780873659505 + + + + + + + + + + + + + + + An anatomical point on the naso-medial indentation of the orbit that corresponds with the inner angle of the eye in the living animal. + + uberon + UBERON:8500004 + entorbitale + + + + + An anatomical point on the naso-medial indentation of the orbit that corresponds with the inner angle of the eye in the living animal. + ISBN:9780873659505 + + + + @@ -862559,6 +862872,30 @@ formulas. Modified from Cooper and Dawson 2009. + + + + + + + + + + + + + + + + + + + + + + + + @@ -862869,14 +863206,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + hagfish have median nostril - + @@ -862890,14 +863227,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:25312359 - + @@ -862911,14 +863248,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + midface division only makes sense for gnathostomes - + @@ -862932,14 +863269,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -862953,14 +863290,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -863039,6 +863376,21 @@ formulas. Modified from Cooper and Dawson 2009. + + + + + + + + + + + + + + + @@ -863049,14 +863401,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ZFS - + @@ -863085,14 +863437,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -863106,14 +863458,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -863172,15 +863524,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + female dbpedia-modified - + @@ -863194,15 +863546,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + male dbpedia-modified - + @@ -863216,14 +863568,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:15843440 - + @@ -863252,14 +863604,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + vertebrates - + @@ -863453,14 +863805,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -863474,14 +863826,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -863495,14 +863847,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -863516,14 +863868,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -863537,14 +863889,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -863558,14 +863910,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -863579,14 +863931,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA-abduced-lr - + @@ -863600,14 +863952,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + definitional - + @@ -863621,14 +863973,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + myelin not present in all taxa that have a commissure - + @@ -863642,14 +863994,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest - + @@ -863708,14 +864060,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + only in species that have a stomach - + @@ -863759,14 +864111,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Vitelline_vein - + @@ -863870,14 +864222,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -863931,14 +864283,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -863952,14 +864304,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16313389 - + @@ -863973,15 +864325,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals ISBN:0073040584-table13.1 - + @@ -863995,15 +864347,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals ISBN:0073040584-table13.1 - + @@ -864017,15 +864369,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -864039,15 +864391,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -864061,16 +864413,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Anurans ISBN:0073040584-table13.1 XAO - + @@ -864084,15 +864436,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Anurans ISBN:0073040584-table13.1 - + @@ -864106,15 +864458,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -864128,15 +864480,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -864150,15 +864502,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + pouches 3 and 4 in chick PMID:16313389 - + @@ -864172,15 +864524,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + pouches 3 and 4 in human PMID:16313389 - + @@ -864194,14 +864546,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Vitelline_vein - + @@ -864215,15 +864567,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + requires review EHDAA2 - + @@ -864237,15 +864589,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + requires review EHDAA2 - + @@ -864259,15 +864611,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + may be present in other parts in other species FMA - + @@ -864341,15 +864693,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lateral margin of coccyx and related border of sacrum dbpedia - + @@ -864363,15 +864715,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lateral margin of coccyx and related border of sacrum dbpedia - + @@ -864385,14 +864737,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + WP - + @@ -864421,14 +864773,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -864442,15 +864794,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + proximally Wikipedia - + @@ -864464,15 +864816,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + proximally Wikipedia - + @@ -864486,15 +864838,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + radially Wikipedia - + @@ -864508,15 +864860,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ulnar side Wikipedia - + @@ -864530,15 +864882,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + distally Wikipedia - + @@ -864552,15 +864904,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + distally Wikipedia - + @@ -864574,15 +864926,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + distally Wikipedia - + @@ -864718,14 +865070,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -864739,15 +865091,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + right arch 4 in human embryology.ch - + @@ -864761,14 +865113,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -864782,14 +865134,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Vitelline_vein - + @@ -864803,14 +865155,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -864824,14 +865176,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22179203 - + @@ -864860,14 +865212,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:080184780X - + @@ -864881,14 +865233,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -864902,14 +865254,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -864923,14 +865275,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -864944,14 +865296,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -864965,14 +865317,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -864986,14 +865338,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -865007,14 +865359,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -865028,14 +865380,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -865049,14 +865401,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -865085,14 +865437,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + WP - + @@ -865106,14 +865458,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 - + @@ -865127,14 +865479,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 - + @@ -865148,14 +865500,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + http://www.avdc.org/Nomenclature.pdf - + @@ -865169,14 +865521,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA-implied - + @@ -865217,14 +865569,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -865238,14 +865590,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -865259,14 +865611,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -865280,14 +865632,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -865318,14 +865670,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMC4038951 - + @@ -865339,14 +865691,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:080184780X - + @@ -865360,14 +865712,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -865381,14 +865733,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -865432,15 +865784,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + teleost NCBIBook:NBK53175 - + @@ -865454,14 +865806,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Euarchontoglires - + @@ -865490,14 +865842,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + evaginated - + @@ -865511,14 +865863,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + evaginated - + @@ -865562,14 +865914,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + https://github.com/obophenotype/uberon/wiki/The-neural-crest - + @@ -865583,14 +865935,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -865604,14 +865956,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -865625,14 +865977,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -865646,14 +865998,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -865684,16 +866036,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Amphibia AAO Wikipedia - + @@ -865707,14 +866059,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -865728,15 +866080,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + UBERON:0011870 or UBERON:0011869 Wikipedia - + @@ -865750,15 +866102,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + hamate Wikipedia - + @@ -865772,14 +866124,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + cjm - + @@ -865810,14 +866162,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + NIFSTD - + @@ -865846,14 +866198,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -865867,14 +866219,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -865888,14 +866240,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + XAO - + @@ -865909,15 +866261,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 Wikipedia - + @@ -865961,14 +866313,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 - + @@ -866014,14 +866366,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -866035,14 +866387,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -866056,14 +866408,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + JB - + @@ -866077,14 +866429,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -866098,14 +866450,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -866119,14 +866471,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -866140,15 +866492,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + AAO https://github.com/geneontology/go-ontology/issues/16143 - + @@ -866177,14 +866529,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + human and mouse - + @@ -866198,14 +866550,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + human and mouse - + @@ -866219,14 +866571,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866240,14 +866592,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866261,14 +866613,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866282,14 +866634,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866303,14 +866655,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866324,14 +866676,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866345,14 +866697,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866366,14 +866718,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866387,14 +866739,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866408,14 +866760,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866429,14 +866781,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866450,14 +866802,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866471,14 +866823,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866492,14 +866844,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866513,14 +866865,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866534,14 +866886,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866555,14 +866907,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866576,14 +866928,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866597,14 +866949,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866618,14 +866970,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866639,14 +866991,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866660,14 +867012,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866681,14 +867033,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866702,14 +867054,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866723,14 +867075,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866744,14 +867096,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + shoge-lite - + @@ -866765,14 +867117,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:9780878932504 - + @@ -866854,14 +867206,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -866875,14 +867227,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -866926,14 +867278,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + ISBN:0073040584 - + @@ -866947,14 +867299,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:16417468 - + @@ -866968,14 +867320,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipathways:WP2062 - + @@ -867004,14 +867356,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -867025,14 +867377,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -867076,14 +867428,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + teleosts - + @@ -867097,14 +867449,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals - + @@ -867148,14 +867500,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 - + @@ -867169,16 +867521,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals EHDAA2 ISBN:0073040584-table13.1 - + @@ -867192,15 +867544,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Mammals ISBN:0073040584-table13.1 - + @@ -867214,15 +867566,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -867236,15 +867588,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -867258,15 +867610,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -867280,15 +867632,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Elasmobranchii ISBN:0073040584-table13.1 - + @@ -867302,15 +867654,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -867324,15 +867676,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -867346,15 +867698,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Urodele ISBN:0073040584-table13.1 - + @@ -867368,15 +867720,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Anuran ISBN:0073040584-table13.1 - + @@ -867390,15 +867742,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Turtles ISBN:0073040584-table13.1 - + @@ -867412,15 +867764,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Turtles ISBN:0073040584-table13.1 - + @@ -867434,15 +867786,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lizard ISBN:0073040584-table13.1 - + @@ -867456,15 +867808,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Lizard ISBN:0073040584-table13.1 - + @@ -867478,15 +867830,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Snakes ISBN:0073040584-table13.1 - + @@ -867500,15 +867852,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Snakes ISBN:0073040584-table13.1 - + @@ -867522,15 +867874,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -867544,15 +867896,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Aves ISBN:0073040584-table13.1 - + @@ -867566,14 +867918,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + conservatively place at deuterostome, excluding acoelomates - + @@ -867632,14 +867984,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + MP - + @@ -867653,14 +868005,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + XAO-abduced - + @@ -867674,14 +868026,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2-modified - + @@ -867695,14 +868047,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -867776,14 +868128,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:3631381 - + @@ -867827,14 +868179,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + AAO - + @@ -867893,14 +868245,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:11997885 - + @@ -867914,14 +868266,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + dbpedia - + @@ -867935,15 +868287,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + skin of the upper lip dbpedia - + @@ -867957,14 +868309,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + dbpedia - + @@ -867993,14 +868345,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + DOI:10.1038/ncomms1502 - + @@ -868014,14 +868366,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + DOI:10.1038/ncomms1502 - + @@ -868035,15 +868387,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 ISBN:9780878932504 - + @@ -868057,15 +868409,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Gallus gallus PMID:17051547 - + @@ -868158,14 +868510,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + DOI:10.1007/BF02547558 - + @@ -868179,15 +868531,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia:Digastric_muscle Wikipedia:Mastoid_process - + @@ -868218,14 +868570,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + cloacal bursa - + @@ -868239,14 +868591,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:11479904 - + @@ -868320,14 +868672,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + Wikipedia - + @@ -868341,14 +868693,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + FMA - + @@ -868362,14 +868714,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22135653 - + @@ -868383,14 +868735,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22135653 - + @@ -868404,14 +868756,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:22135653 - + @@ -868500,15 +868852,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + 15% WP - + @@ -868522,15 +868874,15 @@ formulas. Modified from Cooper and Dawson 2009. - + - + 85-100% WP - + @@ -868544,16 +868896,16 @@ formulas. Modified from Cooper and Dawson 2009. - + - + in the opossum the panniculus carnosis attaches to the humerus DOI:10.2307/1373999 FEED:rd - + @@ -868597,14 +868949,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + PMID:7559104 - + @@ -868663,14 +869015,14 @@ formulas. Modified from Cooper and Dawson 2009. - + - + EHDAA2 - + diff --git a/uberon.obo b/uberon.obo index 560b2d9cf7..3061a9aa3e 100755 --- a/uberon.obo +++ b/uberon.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2023-05-23 +data-version: releases/2023-06-27 subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -24,6 +24,7 @@ subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to b subsetdef: eye_upper_slim "" subsetdef: feed_aligned "subset of classes that have logical defs text defs and synonyms aligned with FEED" subsetdef: functional_classification "functional_classification" +subsetdef: general_cell_types_upper_slim "" subsetdef: gocheck_do_not_annotate "" subsetdef: gocheck_do_not_manually_annotate "" subsetdef: goslim_agr "" @@ -61,7 +62,6 @@ subsetdef: relational_slim "" subsetdef: ro-eco "" subsetdef: RO:0002259 "" subsetdef: scalar_slim "" -subsetdef: term_scheduled_for_obsoletion "" subsetdef: uberon_slim "Uberon slim - subset that excludes obscure terms and deep compositional terms" subsetdef: ubprop:upper_level "" subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified" @@ -517,6 +517,17 @@ subset: 3_STAR is_a: CHEBI:24433 ! group relationship: has_role CHEBI:53000 ! epitope +[Term] +id: CHEBI:142355 +name: purines D-ribonucleoside +namespace: chebi_ontology +def: "A purine ribonucleoside that is a purine derivative attached to a beta-D-ribofuranosyl residue at position 9 via a glycosidic (N-glycosyl) linkage." [] +subset: 3_STAR +synonym: "a purine D-ribonucleoside" RELATED [UniProt] +is_a: CHEBI:26399 ! purine ribonucleoside +relationship: has_functional_parent CHEBI:26386 ! purine nucleobase +relationship: has_functional_parent CHEBI:47013 ! D-ribofuranose + [Term] id: CHEBI:14321 name: glutamate(1-) @@ -790,6 +801,26 @@ relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:16234 ! hydroxide relationship: is_conjugate_base_of CHEBI:29412 ! oxonium +[Term] +id: CHEBI:15378 +name: hydron +namespace: chebi_ontology +alt_id: CHEBI:10744 +alt_id: CHEBI:13357 +alt_id: CHEBI:5584 +def: "The general name for the hydrogen nucleus, to be used without regard to the hydrogen nuclear mass (either for hydrogen in its natural abundance or where it is not desired to distinguish between the isotopes)." [] +subset: 3_STAR +synonym: "H(+)" RELATED [UniProt] +synonym: "H+" RELATED [KEGG_COMPOUND] +synonym: "hydrogen(1+)" EXACT IUPAC_NAME [IUPAC] +synonym: "Hydron" EXACT [KEGG_COMPOUND] +synonym: "hydron" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C00080 +is_a: CHEBI:25414 ! monoatomic monocation +is_a: CHEBI:33251 ! monoatomic hydrogen +is_a: CHEBI:33252 ! atomic nucleus +is_a: CHEBI:60242 ! monovalent inorganic cation + [Term] id: CHEBI:15379 name: dioxygen @@ -846,6 +877,46 @@ relationship: has_role CHEBI:77746 ! human metabolite relationship: has_role CHEBI:77974 ! food packaging gas relationship: is_conjugate_base_of CHEBI:29793 ! hydridodioxygen(1+) +[Term] +id: CHEBI:15422 +name: ATP +namespace: chebi_ontology +alt_id: CHEBI:10789 +alt_id: CHEBI:10841 +alt_id: CHEBI:13236 +alt_id: CHEBI:22249 +alt_id: CHEBI:2359 +alt_id: CHEBI:40938 +def: "An adenosine 5'-phosphate in which the 5'-phosphate is a triphosphate group. It is involved in the transportation of chemical energy during metabolic pathways." [] +subset: 3_STAR +synonym: "adenosine 5'-(tetrahydrogen triphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "Adenosine 5'-triphosphate" RELATED [KEGG_COMPOUND] +synonym: "Adenosine triphosphate" RELATED [ChemIDplus] +synonym: "ADENOSINE-5'-TRIPHOSPHATE" RELATED [PDBeChem] +synonym: "ATP" EXACT [KEGG_COMPOUND] +synonym: "H4atp" RELATED [IUPAC] +xref: Beilstein:73010 {source="Beilstein"} +xref: CAS:56-65-5 {source="ChemIDplus"} +xref: CAS:56-65-5 {source="KEGG COMPOUND"} +xref: Drug_Central:91 {source="DrugCentral"} +xref: DrugBank:DB00171 +xref: Gmelin:34857 {source="Gmelin"} +xref: HMDB:HMDB0000538 +xref: KEGG:C00002 +xref: KEGG:D08646 +xref: KNApSAcK:C00001491 +xref: Patent:US3079379 +xref: PDBeChem:ATP +xref: Reaxys:73010 {source="Reaxys"} +xref: Wikipedia:Adenosine_triphosphate +is_a: CHEBI:37045 ! purine ribonucleoside 5'-triphosphate +is_a: CHEBI:37096 ! adenosine 5'-phosphate +relationship: has_role CHEBI:23357 ! cofactor +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:57299 ! ATP(3-) + [Term] id: CHEBI:15440 name: squalene @@ -1329,6 +1400,73 @@ is_a: CHEBI:25703 ! organic phosphate is_a: CHEBI:37734 ! phosphoric ester relationship: is_conjugate_acid_of CHEBI:62643 ! anionic phospholipid +[Term] +id: CHEBI:16335 +name: adenosine +namespace: chebi_ontology +alt_id: CHEBI:13734 +alt_id: CHEBI:22237 +alt_id: CHEBI:2472 +alt_id: CHEBI:40558 +alt_id: CHEBI:40825 +alt_id: CHEBI:40906 +def: "A ribonucleoside composed of a molecule of adenine attached to a ribofuranose moiety via a beta-N(9)-glycosidic bond." [] +subset: 3_STAR +synonym: "(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol" RELATED [DrugBank] +synonym: "6-Amino-9-beta-D-ribofuranosyl-9H-purine" RELATED [ChemIDplus] +synonym: "9-beta-D-Ribofuranosidoadenine" RELATED [ChemIDplus] +synonym: "9-beta-D-Ribofuranosyl-9H-purin-6-amine" RELATED [ChemIDplus] +synonym: "9-beta-D-ribofuranosyl-9H-purin-6-amine" RELATED [ChEBI] +synonym: "Ade-Rib" RELATED [CBN] +synonym: "Adenine Deoxyribonucleoside" RELATED [DrugBank] +synonym: "Adenocard" RELATED BRAND_NAME [DrugBank] +synonym: "Adenocor" RELATED BRAND_NAME [DrugBank] +synonym: "Adenoscan" RELATED BRAND_NAME [DrugBank] +synonym: "Adenosin" RELATED [ChEBI] +synonym: "ADENOSINE" EXACT [PDBeChem] +synonym: "Adenosine" EXACT [KEGG_COMPOUND] +synonym: "adenosine" EXACT IUPAC_NAME [IUPAC] +synonym: "adenosine" EXACT [UniProt] +synonym: "Adenyldeoxyriboside" RELATED [DrugBank] +synonym: "Ado" RELATED [CBN] +synonym: "beta-D-Adenosine" RELATED [ChemIDplus] +synonym: "Deoxyadenosine" RELATED [DrugBank] +synonym: "Desoxyadenosine" RELATED [DrugBank] +xref: Beilstein:93029 {source="Beilstein"} +xref: CAS:58-61-7 {source="ChemIDplus"} +xref: CAS:58-61-7 {source="NIST Chemistry WebBook"} +xref: CAS:58-61-7 {source="KEGG COMPOUND"} +xref: Drug_Central:90 {source="DrugCentral"} +xref: DrugBank:DB00640 +xref: ECMDB:ECMDB00050 +xref: Gmelin:53385 {source="Gmelin"} +xref: HMDB:HMDB0000050 +xref: KEGG:C00212 +xref: KEGG:D00045 +xref: KNApSAcK:C00007444 +xref: LINCS:LSM-28568 +xref: MetaCyc:ADENOSINE +xref: PDBeChem:ADN +xref: PMID:11213237 {source="Europe PMC"} +xref: PMID:11820865 {source="Europe PMC"} +xref: PMID:11978011 {source="Europe PMC"} +xref: PMID:16183671 {source="Europe PMC"} +xref: PMID:16917093 {source="Europe PMC"} +xref: PMID:17190852 {source="Europe PMC"} +xref: PMID:18000974 {source="Europe PMC"} +xref: PMID:323854 {source="Europe PMC"} +xref: Reaxys:93029 {source="Reaxys"} +xref: Wikipedia:Adenosine +xref: YMDB:YMDB00058 +is_a: CHEBI:142355 ! purines D-ribonucleoside +is_a: CHEBI:22260 ! adenosines +relationship: has_functional_parent CHEBI:16708 ! adenine +relationship: has_role CHEBI:35480 ! analgesic +relationship: has_role CHEBI:35620 ! vasodilator agent +relationship: has_role CHEBI:38070 ! anti-arrhythmia drug +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite + [Term] id: CHEBI:16336 name: hyaluronic acid @@ -1517,6 +1655,70 @@ is_a: CHEBI:25697 ! organic cation is_a: CHEBI:35274 ! ammonium ion derivative relationship: is_conjugate_acid_of CHEBI:33569 ! noradrenaline +[Term] +id: CHEBI:16701 +name: nucleoside 5'-phosphate +namespace: chebi_ontology +alt_id: CHEBI:14674 +alt_id: CHEBI:25603 +alt_id: CHEBI:7650 +def: "A ribosyl or deoxyribosyl derivative of a pyrimidine or purine base in which C-5 of the ribose ring is mono-, di-, tri- or tetra-phosphorylated." [] +subset: 3_STAR +synonym: "Nucleoside 5'-phosphate" EXACT [KEGG_COMPOUND] +synonym: "nucleoside 5'-phosphates" RELATED [ChEBI] +xref: KEGG:C01117 +is_a: CHEBI:29075 ! mononucleotide +relationship: is_conjugate_acid_of CHEBI:57867 ! nucleoside 5'-phosphate dianion + +[Term] +id: CHEBI:16708 +name: adenine +namespace: chebi_ontology +alt_id: CHEBI:13733 +alt_id: CHEBI:22236 +alt_id: CHEBI:2470 +alt_id: CHEBI:40579 +def: "The parent compound of the 6-aminopurines, composed of a purine having an amino group at C-6." [] +subset: 3_STAR +synonym: "6-Aminopurine" RELATED [KEGG_COMPOUND] +synonym: "9H-purin-6-amine" EXACT IUPAC_NAME [IUPAC] +synonym: "A" RELATED [ChEBI] +synonym: "Ade" RELATED [CBN] +synonym: "Adenin" RELATED [NIST_Chemistry_WebBook] +synonym: "ADENINE" EXACT [PDBeChem] +synonym: "Adenine" EXACT [KEGG_COMPOUND] +synonym: "adenine" EXACT [UniProt] +xref: Beilstein:608603 {source="Beilstein"} +xref: CAS:73-24-5 {source="KEGG COMPOUND"} +xref: CAS:73-24-5 {source="ChemIDplus"} +xref: CAS:73-24-5 {source="NIST Chemistry WebBook"} +xref: Drug_Central:89 {source="DrugCentral"} +xref: DrugBank:DB00173 +xref: Gmelin:3903 {source="Gmelin"} +xref: HMDB:HMDB0000034 +xref: KEGG:C00147 +xref: KEGG:D00034 +xref: KNApSAcK:C00001490 +xref: MetaCyc:ADENINE +xref: PDBeChem:ADE +xref: PMID:11985597 {source="Europe PMC"} +xref: PMID:12829005 {source="Europe PMC"} +xref: PMID:12951489 {source="Europe PMC"} +xref: PMID:15063338 {source="Europe PMC"} +xref: PMID:15715490 {source="Europe PMC"} +xref: PMID:17439666 {source="Europe PMC"} +xref: PMID:8070089 {source="Europe PMC"} +xref: Reaxys:608603 {source="Reaxys"} +xref: Wikipedia:Adenine +is_a: CHEBI:20706 ! 6-aminopurines +is_a: CHEBI:26386 ! purine nucleobase +relationship: has_parent_hydride CHEBI:35589 ! 9H-purine +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite + [Term] id: CHEBI:167164 name: mineral nutrient @@ -1558,6 +1760,42 @@ subset: 3_STAR synonym: "glycans" RELATED [ChEBI] is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives +[Term] +id: CHEBI:16761 +name: ADP +namespace: chebi_ontology +alt_id: CHEBI:13222 +alt_id: CHEBI:22244 +alt_id: CHEBI:2342 +alt_id: CHEBI:40553 +def: "A purine ribonucleoside 5'-diphosphate having adenine as the nucleobase." [] +subset: 3_STAR +synonym: "5'-adenylphosphoric acid" RELATED [ChemIDplus] +synonym: "adenosine 5'-(trihydrogen diphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "Adenosine 5'-diphosphate" RELATED [KEGG_COMPOUND] +synonym: "ADENOSINE-5'-DIPHOSPHATE" RELATED [PDBeChem] +synonym: "ADP" EXACT [KEGG_COMPOUND] +synonym: "H3adp" RELATED [IUPAC] +xref: Beilstein:67722 {source="Beilstein"} +xref: CAS:20398-34-9 {source="KEGG COMPOUND"} +xref: CAS:58-64-0 {source="ChemIDplus"} +xref: CAS:58-64-0 {source="KEGG COMPOUND"} +xref: COMe:MOL000173 +xref: DrugBank:DB03431 +xref: Gmelin:88452 {source="Gmelin"} +xref: KEGG:C00008 +xref: KEGG:G11113 +xref: KNApSAcK:C00019353 +xref: PDBeChem:ADP +xref: PMID:16295522 {source="Europe PMC"} +xref: Reaxys:67722 {source="Reaxys"} +is_a: CHEBI:37038 ! purine ribonucleoside 5'-diphosphate +is_a: CHEBI:37096 ! adenosine 5'-phosphate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:456216 ! ADP(3-) +relationship: is_conjugate_acid_of CHEBI:87518 ! ADP(2-) + [Term] id: CHEBI:16765 name: tryptamine @@ -1646,6 +1884,25 @@ relationship: has_role CHEBI:50847 ! immunological adjuvant relationship: has_role CHEBI:75771 ! mouse metabolite relationship: has_role CHEBI:77746 ! human metabolite +[Term] +id: CHEBI:16862 +name: nucleoside 5'-diphosphate +namespace: chebi_ontology +alt_id: CHEBI:13401 +alt_id: CHEBI:13662 +alt_id: CHEBI:14675 +alt_id: CHEBI:25606 +alt_id: CHEBI:7428 +alt_id: CHEBI:7652 +subset: 3_STAR +synonym: "NDP" RELATED [KEGG_COMPOUND] +synonym: "Nucleoside diphosphate" RELATED [KEGG_COMPOUND] +synonym: "nucleoside diphosphates" RELATED [ChEBI] +xref: KEGG:C00454 +is_a: CHEBI:25608 ! nucleoside phosphate +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: is_conjugate_acid_of CHEBI:57930 ! nucleoside 5'-diphosphate(3-) + [Term] id: CHEBI:16865 name: gamma-aminobutyric acid @@ -1705,6 +1962,25 @@ relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:30566 ! gamma-aminobutyrate relationship: is_tautomer_of CHEBI:59888 ! gamma-aminobutyric acid zwitterion +[Term] +id: CHEBI:16988 +name: D-ribose +namespace: chebi_ontology +alt_id: CHEBI:13011 +alt_id: CHEBI:21078 +def: "A ribose in which the chiral carbon atom furthest away from the aldehyde group (C4') has the same configuration as in D-glyceraldehyde." [] +subset: 3_STAR +synonym: "D-Rib" RELATED [JCBN] +synonym: "D-ribo-pentose" EXACT IUPAC_NAME [IUPAC] +synonym: "D-ribose" EXACT IUPAC_NAME [IUPAC] +xref: DrugBank:DB01936 +xref: PMID:24404872 {source="Europe PMC"} +xref: PMID:24752650 {source="Europe PMC"} +is_a: CHEBI:33942 ! ribose +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_enantiomer_of CHEBI:46997 ! L-ribose + [Term] id: CHEBI:16990 name: bilirubin IXalpha @@ -1930,6 +2206,27 @@ xref: Wikipedia:Glucose is_a: CHEBI:33917 ! aldohexose relationship: has_role CHEBI:78675 ! fundamental metabolite +[Term] +id: CHEBI:17258 +name: 7H-purine +namespace: chebi_ontology +alt_id: CHEBI:14968 +alt_id: CHEBI:8639 +def: "The 7H-tautomer of purine." [] +subset: 3_STAR +synonym: "7H-purine" EXACT IUPAC_NAME [IUPAC] +synonym: "Purine" RELATED [KEGG_COMPOUND] +synonym: "Purine base" RELATED [KEGG_COMPOUND] +xref: Beilstein:3200 {source="Beilstein"} +xref: Gmelin:601779 {source="Gmelin"} +xref: HMDB:HMDB0001366 +xref: KEGG:C15587 +xref: Reaxys:3200 {source="Reaxys"} +is_a: CHEBI:35584 ! purine +relationship: is_tautomer_of CHEBI:35586 ! 1H-purine +relationship: is_tautomer_of CHEBI:35588 ! 3H-purine +relationship: is_tautomer_of CHEBI:35589 ! 9H-purine + [Term] id: CHEBI:173084 name: ferroptosis inhibitor @@ -1959,6 +2256,24 @@ xref: PMID:34012798 {source="Europe PMC"} xref: Wikipedia:Ferroptosis is_a: CHEBI:52206 ! biochemical role +[Term] +id: CHEBI:17326 +name: nucleoside 5'-triphoshate +namespace: chebi_ontology +alt_id: CHEBI:13411 +alt_id: CHEBI:14677 +alt_id: CHEBI:25610 +alt_id: CHEBI:7442 +alt_id: CHEBI:7655 +subset: 3_STAR +synonym: "NTP" RELATED [KEGG_COMPOUND] +synonym: "Nucleoside triphosphate" RELATED [KEGG_COMPOUND] +synonym: "nucleoside triphosphates" RELATED [ChEBI] +xref: KEGG:C00201 +is_a: CHEBI:25608 ! nucleoside phosphate +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: is_conjugate_acid_of CHEBI:58104 ! nucleoside 5'-triphoshate(3-) + [Term] id: CHEBI:17347 name: testosterone @@ -2205,6 +2520,19 @@ xref: PMID:34606237 {source="Europe PMC"} xref: Wikipedia:Geroprotector is_a: CHEBI:50267 ! protective agent +[Term] +id: CHEBI:17668 +name: ribonucleoside diphosphate +namespace: chebi_ontology +alt_id: CHEBI:15046 +alt_id: CHEBI:26557 +alt_id: CHEBI:8845 +subset: 3_STAR +synonym: "Ribonucleoside diphosphate" EXACT [KEGG_COMPOUND] +synonym: "ribonucleoside diphosphates" RELATED [ChEBI] +xref: KEGG:C03723 +is_a: CHEBI:16862 ! nucleoside 5'-diphosphate + [Term] id: CHEBI:17761 name: ceramide @@ -2278,6 +2606,19 @@ relationship: has_role CHEBI:61115 ! EC 3.5.1.98 (histone deacetylase) inhibitor relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:30772 ! butyric acid +[Term] +id: CHEBI:17972 +name: ribonucleoside triphosphate +namespace: chebi_ontology +alt_id: CHEBI:15047 +alt_id: CHEBI:26559 +alt_id: CHEBI:8846 +subset: 3_STAR +synonym: "Ribonucleoside triphosphate" EXACT [KEGG_COMPOUND] +synonym: "ribonucleoside triphosphates" RELATED [ChEBI] +xref: KEGG:C03802 +is_a: CHEBI:17326 ! nucleoside 5'-triphoshate + [Term] id: CHEBI:18059 name: lipid @@ -2474,6 +2815,26 @@ is_a: CHEBI:33356 ! iron group element atom relationship: has_role CHEBI:27027 ! micronutrient relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +[Term] +id: CHEBI:18254 +name: ribonucleoside +namespace: chebi_ontology +alt_id: CHEBI:13014 +alt_id: CHEBI:13015 +alt_id: CHEBI:13685 +alt_id: CHEBI:21085 +alt_id: CHEBI:26560 +alt_id: CHEBI:4240 +alt_id: CHEBI:8844 +def: "Any nucleoside where the sugar component is D-ribose." [] +subset: 3_STAR +synonym: "a ribonucleoside" RELATED [UniProt] +synonym: "Ribonucleoside" EXACT [KEGG_COMPOUND] +synonym: "ribonucleosides" RELATED [ChEBI] +xref: KEGG:C00911 +is_a: CHEBI:33838 ! nucleoside +is_a: CHEBI:47019 ! dihydroxytetrahydrofuran + [Term] id: CHEBI:18282 name: nucleobase @@ -2660,6 +3021,18 @@ synonym: "5beta-cholane" EXACT IUPAC_NAME [IUPAC] xref: Beilstein:2048472 {source="Beilstein"} is_a: CHEBI:35519 ! cholane +[Term] +id: CHEBI:20706 +name: 6-aminopurines +namespace: chebi_ontology +def: "Any compound having 6-aminopurine (adenine) as part of its structure." [] +subset: 3_STAR +synonym: "6-aminopurines" EXACT [ChEBI] +xref: PMID:1646334 {source="Europe PMC"} +xref: PMID:18524423 {source="Europe PMC"} +xref: PMID:7342604 {source="Europe PMC"} +is_a: CHEBI:22527 ! aminopurine + [Term] id: CHEBI:21638 name: N-acylglucosamine @@ -2679,6 +3052,20 @@ synonym: "N-acyl-hexosamine" EXACT [ChEBI] synonym: "N-acyl-hexosamines" RELATED [ChEBI] is_a: CHEBI:24586 ! hexosamine +[Term] +id: CHEBI:21731 +name: N-glycosyl compound +namespace: chebi_ontology +def: "A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to a nitrogen atom, thus creating a C-N bond." [] +subset: 3_STAR +synonym: "glycosylamine" EXACT IUPAC_NAME [IUPAC] +synonym: "glycosylamines" RELATED [IUPAC] +synonym: "N-glycoside" RELATED [ChEBI] +synonym: "N-glycosides" RELATED [ChEBI] +synonym: "N-glycosyl compounds" RELATED [ChEBI] +is_a: CHEBI:35352 ! organonitrogen compound +is_a: CHEBI:63161 ! glycosyl compound + [Term] id: CHEBI:22160 name: acetamides @@ -2700,6 +3087,24 @@ synonym: "alkanoyl group" RELATED [ChEBI] synonym: "groupe acyle" RELATED [IUPAC] is_a: CHEBI:33247 ! organic group +[Term] +id: CHEBI:22256 +name: adenosine phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "adenosine phosphates" RELATED [ChEBI] +is_a: CHEBI:61296 ! adenyl ribonucleotide +relationship: has_functional_parent CHEBI:16335 ! adenosine + +[Term] +id: CHEBI:22260 +name: adenosines +namespace: chebi_ontology +def: "Any purine ribonucleoside that is a derivative of adenosine." [] +subset: 3_STAR +is_a: CHEBI:26399 ! purine ribonucleoside +relationship: has_functional_parent CHEBI:16708 ! adenine + [Term] id: CHEBI:22313 name: alkaline earth metal atom @@ -2760,6 +3165,15 @@ synonym: "aminoglycans" RELATED [ChEBI] is_a: CHEBI:35352 ! organonitrogen compound is_a: CHEBI:65212 ! polysaccharide derivative +[Term] +id: CHEBI:22527 +name: aminopurine +namespace: chebi_ontology +def: "Any purine having at least one amino substituent." [] +subset: 3_STAR +synonym: "aminopurines" RELATED [ChEBI] +is_a: CHEBI:26401 ! purines + [Term] id: CHEBI:22563 name: anion @@ -3011,6 +3425,16 @@ subset: 3_STAR synonym: "diazoles" RELATED [ChEBI] is_a: CHEBI:68452 ! azole +[Term] +id: CHEBI:237958 +name: (\{[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate +namespace: chebi_ontology +subset: 2_STAR +is_a: CHEBI:37045 ! purine ribonucleoside 5'-triphosphate +is_a: CHEBI:37096 ! adenosine 5'-phosphate +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: is_conjugate_acid_of CHEBI:57299 ! ATP(3-) + [Term] id: CHEBI:23888 name: drug @@ -3558,6 +3982,30 @@ synonym: "nonmetal" RELATED [ChEBI] synonym: "nonmetals" RELATED [ChEBI] is_a: CHEBI:33250 ! atom +[Term] +id: CHEBI:25608 +name: nucleoside phosphate +namespace: chebi_ontology +def: "A nucleobase-containing molecular entity that is a nucleoside in which one or more of the sugar hydroxy groups has been converted into a mono- or poly-phosphate. The term includes both nucleotides and non-nucleotide nucleoside phosphates." [] +subset: 3_STAR +synonym: "NMP" RELATED [KEGG_COMPOUND] +synonym: "Nucleoside monophosphate" RELATED [KEGG_COMPOUND] +synonym: "nucleoside phosphates" RELATED [ChEBI] +xref: KEGG:C01329 +is_a: CHEBI:25703 ! organic phosphate +is_a: CHEBI:37734 ! phosphoric ester +is_a: CHEBI:61120 ! nucleobase-containing molecular entity +relationship: has_functional_parent CHEBI:33838 ! nucleoside + +[Term] +id: CHEBI:25693 +name: organic heteromonocyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic heteromonocyclic compounds" RELATED [ChEBI] +is_a: CHEBI:24532 ! organic heterocyclic compound +is_a: CHEBI:33670 ! heteromonocyclic compound + [Term] id: CHEBI:25696 name: organic anion @@ -3673,6 +4121,26 @@ synonym: "oxygen molecular entity" EXACT [ChEBI] is_a: CHEBI:33304 ! chalcogen molecular entity relationship: has_part CHEBI:25805 ! oxygen atom +[Term] +id: CHEBI:25900 +name: aldopentose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "aldopentose phosphate" EXACT [ChEBI] +synonym: "aldopentose phosphates" RELATED [ChEBI] +is_a: CHEBI:35131 ! aldose phosphate +is_a: CHEBI:84055 ! pentose phosphate + +[Term] +id: CHEBI:25901 +name: pentose +namespace: chebi_ontology +def: "A five-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldopentose) or a ketone group at position 2 (ketopentose)." [] +subset: 3_STAR +synonym: "pentose" EXACT [ChEBI] +synonym: "pentoses" RELATED [ChEBI] +is_a: CHEBI:35381 ! monosaccharide + [Term] id: CHEBI:25905 name: peptide hormone @@ -3795,6 +4263,103 @@ xref: Wikipedia:Porphyrin is_a: CHEBI:36309 ! cyclic tetrapyrrole relationship: has_role CHEBI:23357 ! cofactor +[Term] +id: CHEBI:26386 +name: purine nucleobase +namespace: chebi_ontology +def: "A nucleobase whose skeleton is derived from purine." [] +subset: 3_STAR +synonym: "a purine nucleobase" RELATED [UniProt] +synonym: "purine bases" RELATED [ChEBI] +synonym: "purine nucleobase" EXACT [ChEBI] +synonym: "purine nucleobases" RELATED [ChEBI] +xref: KEGG:C15587 +is_a: CHEBI:18282 ! nucleobase +is_a: CHEBI:26401 ! purines + +[Term] +id: CHEBI:26391 +name: purine nucleoside diphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine nucleoside diphosphates" RELATED [ChEBI] +is_a: CHEBI:16862 ! nucleoside 5'-diphosphate + +[Term] +id: CHEBI:26393 +name: purine nucleoside triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine nucleoside triphosphates" RELATED [ChEBI] +is_a: CHEBI:17326 ! nucleoside 5'-triphoshate + +[Term] +id: CHEBI:26394 +name: purine nucleoside +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine nucleoside" EXACT [ChEBI] +synonym: "purine nucleosides" RELATED [ChEBI] +is_a: CHEBI:26401 ! purines +is_a: CHEBI:33838 ! nucleoside + +[Term] +id: CHEBI:26395 +name: purine nucleotide +namespace: chebi_ontology +def: "Any nucleotide that has a purine nucleobase." [] +subset: 3_STAR +synonym: "purine nucleotides" RELATED [ChEBI] +is_a: CHEBI:26401 ! purines +is_a: CHEBI:36976 ! nucleotide + +[Term] +id: CHEBI:26396 +name: purine ribonucleoside diphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleoside diphosphates" RELATED [ChEBI] +is_a: CHEBI:17668 ! ribonucleoside diphosphate +is_a: CHEBI:26391 ! purine nucleoside diphosphate + +[Term] +id: CHEBI:26398 +name: purine ribonucleoside triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleoside triphosphates" RELATED [ChEBI] +is_a: CHEBI:17972 ! ribonucleoside triphosphate +is_a: CHEBI:26393 ! purine nucleoside triphosphate + +[Term] +id: CHEBI:26399 +name: purine ribonucleoside +namespace: chebi_ontology +def: "A ribonucleoside that has a purine moiety as the nucleobase (the R group in the illustration)." [] +subset: 3_STAR +synonym: "purine ribonucleosides" RELATED [ChEBI] +is_a: CHEBI:18254 ! ribonucleoside +is_a: CHEBI:26394 ! purine nucleoside + +[Term] +id: CHEBI:26400 +name: purine ribonucleotide +namespace: chebi_ontology +def: "Any ribonucleotide that has a purine nucleobase." [] +subset: 3_STAR +synonym: "purine ribonucleotides" RELATED [ChEBI] +is_a: CHEBI:26395 ! purine nucleotide +is_a: CHEBI:26561 ! ribonucleotide + +[Term] +id: CHEBI:26401 +name: purines +namespace: chebi_ontology +alt_id: CHEBI:13678 +def: "A class of imidazopyrimidines that consists of purine and its substituted derivatives." [] +subset: 3_STAR +is_a: CHEBI:35875 ! imidazopyrimidine + [Term] id: CHEBI:26469 name: quaternary nitrogen compound @@ -3804,6 +4369,24 @@ subset: 3_STAR is_a: CHEBI:35352 ! organonitrogen compound relationship: has_part CHEBI:35267 ! quaternary ammonium ion +[Term] +id: CHEBI:26561 +name: ribonucleotide +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribonucleotides" RELATED [ChEBI] +is_a: CHEBI:26562 ! ribose phosphate +is_a: CHEBI:36976 ! nucleotide + +[Term] +id: CHEBI:26562 +name: ribose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribose phosphate" EXACT [ChEBI] +synonym: "ribose phosphates" RELATED [ChEBI] +is_a: CHEBI:25900 ! aldopentose phosphate + [Term] id: CHEBI:26607 name: saturated fatty acid @@ -3917,6 +4500,16 @@ synonym: "Steroidhormone" RELATED [ChEBI] is_a: CHEBI:35341 ! steroid relationship: has_role CHEBI:24621 ! hormone +[Term] +id: CHEBI:26816 +name: carbohydrate phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "carbohydrate phosphates" RELATED [ChEBI] +is_a: CHEBI:25703 ! organic phosphate +is_a: CHEBI:37734 ! phosphoric ester +is_a: CHEBI:63299 ! carbohydrate derivative + [Term] id: CHEBI:26819 name: sulfuric ester @@ -4038,6 +4631,15 @@ xref: Wikipedia:Terpenoid is_a: CHEBI:24913 ! isoprenoid relationship: has_parent_hydride CHEBI:35186 ! terpene +[Term] +id: CHEBI:26912 +name: oxolanes +namespace: chebi_ontology +def: "Any oxacycle having an oxolane (tetrahydrofuran) skeleton." [] +subset: 3_STAR +is_a: CHEBI:25693 ! organic heteromonocyclic compound +is_a: CHEBI:38104 ! oxacycle + [Term] id: CHEBI:26932 name: tetrapyrrole @@ -4678,6 +5280,19 @@ is_a: CHEBI:25696 ! organic anion is_a: CHEBI:35406 ! oxoanion relationship: is_conjugate_base_of CHEBI:33575 ! carboxylic acid +[Term] +id: CHEBI:29075 +name: mononucleotide +namespace: chebi_ontology +alt_id: CHEBI:14616 +alt_id: CHEBI:25404 +alt_id: CHEBI:6983 +subset: 3_STAR +synonym: "Mononucleotide" EXACT [KEGG_COMPOUND] +synonym: "mononucleotides" RELATED [ChEBI] +xref: KEGG:C02171 +is_a: CHEBI:36976 ! nucleotide + [Term] id: CHEBI:29101 name: sodium(1+) @@ -4986,6 +5601,23 @@ relationship: has_functional_parent CHEBI:17968 ! butyrate relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:16865 ! gamma-aminobutyric acid +[Term] +id: CHEBI:30616 +name: ATP(4-) +namespace: chebi_ontology +def: "A nucleoside triphosphate(4-) obtained by global deprotonation of the triphosphate OH groups of ATP; major species present at pH 7.3." [] +subset: 3_STAR +synonym: "adenosine 5'-triphosphate(4-)" EXACT IUPAC_NAME [IUPAC] +synonym: "ATP" RELATED [UniProt] +synonym: "atp" RELATED [IUPAC] +xref: Beilstein:3581767 {source="Beilstein"} +xref: Gmelin:342798 {source="Gmelin"} +is_a: CHEBI:61557 ! nucleoside 5'-triphoshate(4-) +relationship: has_role CHEBI:23357 ! cofactor +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:57299 ! ATP(3-) + [Term] id: CHEBI:30751 name: formic acid @@ -5369,6 +6001,15 @@ is_a: CHEBI:24431 ! chemical entity relationship: has_part CHEBI:10545 ! electron relationship: has_part CHEBI:33252 ! atomic nucleus +[Term] +id: CHEBI:33251 +name: monoatomic hydrogen +namespace: chebi_ontology +subset: 3_STAR +synonym: "atomic hydrogen" RELATED [ChEBI] +is_a: CHEBI:33238 ! monoatomic entity +is_a: CHEBI:33260 ! elemental hydrogen + [Term] id: CHEBI:33252 name: atomic nucleus @@ -5422,6 +6063,15 @@ synonym: "homoatomic molecular entities" RELATED [ChEBI] synonym: "homoatomic molecular entity" RELATED [ChEBI] is_a: CHEBI:23367 ! molecular entity +[Term] +id: CHEBI:33260 +name: elemental hydrogen +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:24835 ! inorganic molecular entity +is_a: CHEBI:33259 ! elemental molecular entity +is_a: CHEBI:33608 ! hydrogen molecular entity + [Term] id: CHEBI:33262 name: elemental oxygen @@ -5725,6 +6375,28 @@ synonym: "sulfur oxoacid derivatives" RELATED [ChEBI] is_a: CHEBI:26835 ! sulfur molecular entity is_a: CHEBI:33241 ! oxoacid derivative +[Term] +id: CHEBI:33447 +name: phospho sugar +namespace: chebi_ontology +alt_id: CHEBI:15132 +alt_id: CHEBI:25406 +alt_id: CHEBI:26086 +alt_id: CHEBI:9320 +def: "Any monosaccharide containing an alcoholic hydroxy group esterified with phosphoric acid." [] +subset: 3_STAR +synonym: "monosaccharide phosphates" RELATED [ChEBI] +synonym: "phospho sugar" EXACT [ChEBI] +synonym: "phospho sugars" RELATED [ChEBI] +synonym: "phosphorylated sugar" RELATED [ChEBI] +synonym: "phosphorylated sugars" RELATED [ChEBI] +synonym: "phosphosugar" RELATED [ChEBI] +synonym: "phosphosugars" RELATED [ChEBI] +xref: KEGG:C00934 +xref: PMID:18186488 {source="Europe PMC"} +is_a: CHEBI:26816 ! carbohydrate phosphate +is_a: CHEBI:63367 ! monosaccharide derivative + [Term] id: CHEBI:33457 name: phosphorus oxoacid @@ -6118,6 +6790,24 @@ synonym: "organic aromatic compounds" RELATED [ChEBI] is_a: CHEBI:33655 ! aromatic compound is_a: CHEBI:33832 ! organic cyclic compound +[Term] +id: CHEBI:33661 +name: monocyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "monocyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33595 ! cyclic compound + +[Term] +id: CHEBI:33670 +name: heteromonocyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "heteromonocyclic compound" EXACT IUPAC_NAME [IUPAC] +synonym: "heteromonocyclic compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33661 ! monocyclic compound +is_a: CHEBI:5686 ! heterocyclic compound + [Term] id: CHEBI:33671 name: heteropolycyclic compound @@ -6467,6 +7157,26 @@ xref: COMe:PRX000001 is_a: CHEBI:36080 ! protein is_a: PR:000000001 ! protein +[Term] +id: CHEBI:33838 +name: nucleoside +namespace: chebi_ontology +alt_id: CHEBI:13661 +alt_id: CHEBI:25611 +alt_id: CHEBI:7647 +def: "An N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents." [] +subset: 3_STAR +synonym: "a nucleoside" RELATED [UniProt] +synonym: "Nucleoside" EXACT [KEGG_COMPOUND] +synonym: "nucleosides" EXACT IUPAC_NAME [IUPAC] +synonym: "nucleosides" RELATED [ChEBI] +xref: KEGG:C00801 +xref: Wikipedia:Nucleoside +is_a: CHEBI:21731 ! N-glycosyl compound +is_a: CHEBI:26912 ! oxolanes +is_a: CHEBI:61120 ! nucleobase-containing molecular entity +relationship: has_functional_parent CHEBI:16646 ! carbohydrate + [Term] id: CHEBI:33839 name: macromolecule @@ -6513,6 +7223,18 @@ synonym: "reagent" EXACT IUPAC_NAME [IUPAC] synonym: "reagents" RELATED [ChEBI] is_a: CHEBI:33232 ! application +[Term] +id: CHEBI:33916 +name: aldopentose +namespace: chebi_ontology +def: "A pentose with a (potential) aldehyde group at one end." [] +subset: 3_STAR +synonym: "aldopentose" EXACT [ChEBI] +synonym: "aldopentoses" RELATED [ChEBI] +xref: PMID:10723607 {source="Europe PMC"} +is_a: CHEBI:15693 ! aldose +is_a: CHEBI:25901 ! pentose + [Term] id: CHEBI:33917 name: aldohexose @@ -6534,6 +7256,18 @@ subset: 3_STAR synonym: "macronutrients" RELATED [ChEBI] is_a: CHEBI:33284 ! nutrient +[Term] +id: CHEBI:33942 +name: ribose +namespace: chebi_ontology +alt_id: CHEBI:26564 +def: "Any aldopentose where the open-chain form has all the hydroxy groups on the same side in the Fischer projection. Occurrs in two enantiomeric forms, D- and L-ribose, of which only the former is found in nature." [] +subset: 3_STAR +synonym: "Rib" RELATED [JCBN] +synonym: "ribo-pentose" EXACT IUPAC_NAME [IUPAC] +synonym: "ribose" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33916 ! aldopentose + [Term] id: CHEBI:350546 name: serotonin(1+) @@ -6565,6 +7299,14 @@ subset: 3_STAR synonym: "azanes" RELATED [ChEBI] is_a: CHEBI:35106 ! nitrogen hydride +[Term] +id: CHEBI:35131 +name: aldose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "aldose phosphates" RELATED [ChEBI] +is_a: CHEBI:33447 ! phospho sugar + [Term] id: CHEBI:35147 name: (6'R)-beta,epsilon-carotene @@ -6946,6 +7688,15 @@ synonym: "alkali metal salts" RELATED [ChEBI] is_a: CHEBI:24866 ! salt is_a: CHEBI:33296 ! alkali metal molecular entity +[Term] +id: CHEBI:35480 +name: analgesic +namespace: chebi_ontology +def: "An agent capable of relieving pain without the loss of consciousness or without producing anaesthesia. In addition, analgesic is a role played by a compound which is exhibited by a capability to cause a reduction of pain symptoms." [] +subset: 3_STAR +is_a: CHEBI:23888 ! drug +is_a: CHEBI:52210 ! pharmacological role + [Term] id: CHEBI:35488 name: central nervous system depressant @@ -7025,6 +7776,17 @@ synonym: "sympathomimetic" RELATED [ChEBI] synonym: "sympathomimetics" RELATED [ChEBI] is_a: CHEBI:37962 ! adrenergic agent +[Term] +id: CHEBI:35552 +name: heterocyclic organic fundamental parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "heterocyclic fundamental parent" RELATED [ChEBI] +synonym: "heterocyclic organic fundamental parents" RELATED [ChEBI] +synonym: "heterocyclic parent hydrides" EXACT IUPAC_NAME [IUPAC] +synonym: "organic heterocyclic fundamental parents" RELATED [ChEBI] +is_a: CHEBI:33245 ! organic fundamental parent + [Term] id: CHEBI:35554 name: cardiovascular drug @@ -7035,6 +7797,17 @@ synonym: "cardiovascular agent" RELATED [ChEBI] synonym: "cardiovascular drugs" RELATED [ChEBI] is_a: CHEBI:23888 ! drug +[Term] +id: CHEBI:35568 +name: mancude ring +namespace: chebi_ontology +def: "Any molecular entity that consists of a ring having (formally) the maximum number of noncumulative double bonds." [] +subset: 3_STAR +synonym: "mancude rings" RELATED [ChEBI] +synonym: "mancude-ring systems" EXACT IUPAC_NAME [IUPAC] +synonym: "mancunide-ring systems" RELATED [IUPAC] +is_a: CHEBI:23367 ! molecular entity + [Term] id: CHEBI:35569 name: alpha-adrenergic agonist @@ -7047,6 +7820,98 @@ synonym: "alpha-adrenoceptor agonists" RELATED [IUPHAR] is_a: CHEBI:37886 ! adrenergic agonist is_a: CHEBI:48539 ! alpha-adrenergic drug +[Term] +id: CHEBI:35570 +name: mancude organic heterobicyclic parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "mancude organic heterobicyclic parents" RELATED [ChEBI] +synonym: "mancude-ring organic heterobicyclic parents" RELATED [ChEBI] +is_a: CHEBI:27171 ! organic heterobicyclic compound +is_a: CHEBI:35571 ! mancude organic heterocyclic parent + +[Term] +id: CHEBI:35571 +name: mancude organic heterocyclic parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "mancude organic heterocyclic parents" RELATED [ChEBI] +synonym: "mancude-ring organic heterocyclic parents" RELATED [ChEBI] +is_a: CHEBI:35552 ! heterocyclic organic fundamental parent +is_a: CHEBI:35573 ! organic mancude parent + +[Term] +id: CHEBI:35573 +name: organic mancude parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic mancude parents" RELATED [ChEBI] +synonym: "organic mancude-ring parents" RELATED [ChEBI] +is_a: CHEBI:33245 ! organic fundamental parent +is_a: CHEBI:35568 ! mancude ring + +[Term] +id: CHEBI:35584 +name: purine +namespace: chebi_ontology +def: "A heterobicyclic aromatic organic compound comprising a pyrimidine ring fused to an imidazole ring; the parent compound of the purines." [] +subset: 3_STAR +synonym: "purine" EXACT IUPAC_NAME [IUPAC] +xref: HMDB:HMDB0001366 +xref: KEGG:C15587 +xref: MetaCyc:PURINE +xref: PMID:12865945 {source="Europe PMC"} +xref: PMID:24088627 {source="Europe PMC"} +is_a: CHEBI:26401 ! purines +is_a: CHEBI:35570 ! mancude organic heterobicyclic parent +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:35586 +name: 1H-purine +namespace: chebi_ontology +def: "The 1H-tautomer of purine." [] +subset: 3_STAR +synonym: "1H-purine" EXACT [ChEBI] +xref: Gmelin:2379911 {source="Gmelin"} +is_a: CHEBI:35584 ! purine +relationship: is_tautomer_of CHEBI:17258 ! 7H-purine +relationship: is_tautomer_of CHEBI:35588 ! 3H-purine +relationship: is_tautomer_of CHEBI:35589 ! 9H-purine + +[Term] +id: CHEBI:35588 +name: 3H-purine +namespace: chebi_ontology +def: "The 3H-tautomer of purine." [] +subset: 3_STAR +synonym: "3H-purine" EXACT IUPAC_NAME [IUPAC] +xref: PMID:6149478 {source="Europe PMC"} +xref: PMID:7178185 {source="Europe PMC"} +xref: PMID:7296170 {source="Europe PMC"} +xref: Reaxys:1210196 {source="Reaxys"} +is_a: CHEBI:35584 ! purine +relationship: is_tautomer_of CHEBI:17258 ! 7H-purine +relationship: is_tautomer_of CHEBI:35586 ! 1H-purine +relationship: is_tautomer_of CHEBI:35589 ! 9H-purine + +[Term] +id: CHEBI:35589 +name: 9H-purine +namespace: chebi_ontology +def: "The 9H-tautomer of purine." [] +subset: 3_STAR +synonym: "9H-purine" EXACT IUPAC_NAME [IUPAC] +synonym: "9H-purine" EXACT [UniProt] +xref: Beilstein:606899 {source="Beilstein"} +xref: CAS:120-73-0 {source="NIST Chemistry WebBook"} +xref: Gmelin:3120 {source="Gmelin"} +xref: Wikipedia:Purine +is_a: CHEBI:35584 ! purine +relationship: is_tautomer_of CHEBI:17258 ! 7H-purine +relationship: is_tautomer_of CHEBI:35586 ! 1H-purine +relationship: is_tautomer_of CHEBI:35588 ! 3H-purine + [Term] id: CHEBI:35604 name: carbon oxoanion @@ -7240,6 +8105,16 @@ synonym: "tetrapyrrole fundamental parents" RELATED [ChEBI] is_a: CHEBI:26932 ! tetrapyrrole is_a: CHEBI:35507 ! natural product fundamental parent +[Term] +id: CHEBI:35875 +name: imidazopyrimidine +namespace: chebi_ontology +subset: 3_STAR +synonym: "imidazopyrimidines" RELATED [ChEBI] +is_a: CHEBI:27171 ! organic heterobicyclic compound +is_a: CHEBI:33833 ! heteroarene +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + [Term] id: CHEBI:35881 name: pnictogen hydride @@ -7719,6 +8594,30 @@ xref: PMID:17586126 {source="Europe PMC"} is_a: CHEBI:25806 ! oxygen molecular entity is_a: CHEBI:36962 ! organochalcogen compound +[Term] +id: CHEBI:36976 +name: nucleotide +namespace: chebi_ontology +alt_id: CHEBI:13215 +alt_id: CHEBI:13663 +alt_id: CHEBI:7656 +def: "A nucleotide is a nucleoside phosphate resulting from the condensation of the 3 or 5 hydroxy group of a nucleoside with phosphoric acid." [] +subset: 3_STAR +synonym: "Nucleotide" EXACT [KEGG_COMPOUND] +synonym: "nucleotides" RELATED [ChEBI] +xref: KEGG:C00215 +xref: Wikipedia:Nucleotide +is_a: CHEBI:25608 ! nucleoside phosphate + +[Term] +id: CHEBI:37015 +name: ribonucleoside 5'-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribonucleoside 5'-phosphates" RELATED [ChEBI] +is_a: CHEBI:16701 ! nucleoside 5'-phosphate +is_a: CHEBI:26561 ! ribonucleotide + [Term] id: CHEBI:37022 name: amino-acid anion @@ -7731,6 +8630,50 @@ is_a: CHEBI:29067 ! carboxylic acid anion is_a: CHEBI:35352 ! organonitrogen compound relationship: is_conjugate_base_of CHEBI:33709 ! amino acid +[Term] +id: CHEBI:37038 +name: purine ribonucleoside 5'-diphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleoside 5'-diphosphates" RELATED [ChEBI] +is_a: CHEBI:26396 ! purine ribonucleoside diphosphate +is_a: CHEBI:26400 ! purine ribonucleotide +is_a: CHEBI:37075 ! ribonucleoside 5'-diphosphate + +[Term] +id: CHEBI:37045 +name: purine ribonucleoside 5'-triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleoside 5'-triphosphates" RELATED [ChEBI] +is_a: CHEBI:26398 ! purine ribonucleoside triphosphate +is_a: CHEBI:26400 ! purine ribonucleotide +is_a: CHEBI:37076 ! ribonucleoside 5'-triphosphate + +[Term] +id: CHEBI:37075 +name: ribonucleoside 5'-diphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribonucleoside 5'-diphosphates" RELATED [ChEBI] +is_a: CHEBI:37015 ! ribonucleoside 5'-phosphate + +[Term] +id: CHEBI:37076 +name: ribonucleoside 5'-triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribonucleoside 5'-triphosphates" RELATED [ChEBI] +is_a: CHEBI:37015 ! ribonucleoside 5'-phosphate + +[Term] +id: CHEBI:37096 +name: adenosine 5'-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "adenosine 5'-phosphates" RELATED [ChEBI] +is_a: CHEBI:22256 ! adenosine phosphate + [Term] id: CHEBI:37163 name: glucan @@ -7939,6 +8882,16 @@ synonym: "adrenergic neuron agents" RELATED [ChEBI] synonym: "adrenergics" RELATED [ChEBI] is_a: CHEBI:35942 ! neurotransmitter agent +[Term] +id: CHEBI:38070 +name: anti-arrhythmia drug +namespace: chebi_ontology +def: "A drug used for the treatment or prevention of cardiac arrhythmias. Anti-arrhythmia drugs may affect the polarisation-repolarisation phase of the action potential, its excitability or refractoriness, or impulse conduction or membrane responsiveness within cardiac fibres." [] +subset: 3_STAR +synonym: "anti-arrhythmia agent" RELATED [ChEBI] +synonym: "antiarrhythmic agent" RELATED [ChEBI] +is_a: CHEBI:35554 ! cardiovascular drug + [Term] id: CHEBI:38077 name: polypyrrole @@ -7962,6 +8915,19 @@ synonym: "organonitrogen heterocyclic compounds" RELATED [ChEBI] is_a: CHEBI:24532 ! organic heterocyclic compound is_a: CHEBI:35352 ! organonitrogen compound +[Term] +id: CHEBI:38104 +name: oxacycle +namespace: chebi_ontology +def: "Any organic heterocyclic compound containing at least one ring oxygen atom." [] +subset: 3_STAR +synonym: "heterocyclic organooxygen compounds" RELATED [ChEBI] +synonym: "organooxygen heterocyclic compounds" RELATED [ChEBI] +synonym: "oxacycles" RELATED [ChEBI] +xref: PMID:17134300 {source="Europe PMC"} +is_a: CHEBI:24532 ! organic heterocyclic compound +is_a: CHEBI:36963 ! organooxygen compound + [Term] id: CHEBI:38147 name: cardiotonic drug @@ -8393,6 +9359,24 @@ relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite relationship: is_conjugate_acid_of CHEBI:18367 ! phosphate(3-) relationship: is_conjugate_base_of CHEBI:39745 ! dihydrogenphosphate +[Term] +id: CHEBI:456216 +name: ADP(3-) +namespace: chebi_ontology +def: "A nucleoside 5'-diphosphate(3-) arising from deprotonation of all three diphosphate OH groups of adenosine 5'-diphosphate (ADP); major species present at pH 7.3." [] +subset: 3_STAR +synonym: "5'-O-[(phosphonatooxy)phosphinato]adenosine" RELATED [ChEBI] +synonym: "adenosine 5'-diphosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "ADP" RELATED [UniProt] +synonym: "ADP trianion" RELATED [ChEBI] +xref: Beilstein:3783669 {source="Beilstein"} +xref: Gmelin:341336 {source="Gmelin"} +is_a: CHEBI:57930 ! nucleoside 5'-diphosphate(3-) +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:16761 ! ADP +relationship: is_conjugate_base_of CHEBI:87518 ! ADP(2-) + [Term] id: CHEBI:45696 name: hydrogensulfate @@ -8487,6 +9471,72 @@ synonym: "carboxyl group" RELATED [ChEBI] xref: PDBeChem:FMT is_a: CHEBI:33249 ! organyl group +[Term] +id: CHEBI:46997 +name: L-ribose +namespace: chebi_ontology +def: "A ribose in which the chiral carbon atom furthest away from the aldehyde group (C4') has the same configuration as in L-glyceraldehyde." [] +subset: 3_STAR +synonym: "L-Rib" RELATED [JCBN] +synonym: "L-ribo-pentose" EXACT IUPAC_NAME [IUPAC] +synonym: "L-ribose" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33942 ! ribose +relationship: is_enantiomer_of CHEBI:16988 ! D-ribose + +[Term] +id: CHEBI:46998 +name: ribofuranose +namespace: chebi_ontology +def: "A cyclic ribose having a 5-membered tetrahydrofuran ring; the predominant (C3'-endo) form of the two cyclic structures (the other is the \"C2'-endo\" form, having a 6-membered ring) adopted by ribose in aqueous solution." [] +subset: 3_STAR +synonym: "rel-(3R,4S,5R)-5-(hydroxymethyl)tetrahydrofuran-2,3,4-triol" RELATED [IUPAC] +synonym: "ribofuranose" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33942 ! ribose +relationship: has_role CHEBI:84735 ! algal metabolite + +[Term] +id: CHEBI:47013 +name: D-ribofuranose +namespace: chebi_ontology +alt_id: CHEBI:4233 +alt_id: CHEBI:46999 +def: "A ribofuranose having D-configuration." [] +subset: 3_STAR +synonym: "(3R,4S,5R)-5-(hydroxymethyl)tetrahydrofuran-2,3,4-triol" RELATED [IUPAC] +synonym: "D-ribofuranose" EXACT IUPAC_NAME [IUPAC] +synonym: "D-Ribose" RELATED [KEGG_COMPOUND] +synonym: "D-ribose" RELATED [UniProt] +synonym: "ribose" RELATED [ChemIDplus] +synonym: "WURCS=2.0/1,1,0/[a222h-1x_1-4]/1/" RELATED [GlyTouCan] +xref: Beilstein:1904878 {source="Beilstein"} +xref: CAS:50-69-1 {source="KEGG COMPOUND"} +xref: CAS:613-83-2 {source="ChemIDplus"} +xref: GlyGen:G31080DL +xref: GlyTouCan:G31080DL +xref: Gmelin:364108 {source="Gmelin"} +xref: KEGG:C00121 +xref: Patent:US2152662 +xref: PMID:9506998 {source="Europe PMC"} +xref: Reaxys:1904878 {source="Reaxys"} +is_a: CHEBI:16988 ! D-ribose +is_a: CHEBI:46998 ! ribofuranose + +[Term] +id: CHEBI:47017 +name: tetrahydrofuranol +namespace: chebi_ontology +subset: 3_STAR +synonym: "tetrahydrofuranols" RELATED [ChEBI] +is_a: CHEBI:26912 ! oxolanes + +[Term] +id: CHEBI:47019 +name: dihydroxytetrahydrofuran +namespace: chebi_ontology +subset: 3_STAR +synonym: "dihydroxytetrahydrofurans" RELATED [ChEBI] +is_a: CHEBI:47017 ! tetrahydrofuranol + [Term] id: CHEBI:47622 name: acetate ester @@ -9376,6 +10426,21 @@ synonym: "Heterocyclic compound" EXACT [KEGG_COMPOUND] synonym: "heterocyclic compounds" RELATED [ChEBI] is_a: CHEBI:33595 ! cyclic compound +[Term] +id: CHEBI:57299 +name: ATP(3-) +namespace: chebi_ontology +def: "A ribonucleoside triphosphate oxoanion that is the trianion of adenosine 5'-triphosphate arising from deprotonation of three of the four free triphosphate OH groups." [] +subset: 3_STAR +xref: Beilstein:9535056 {source="Beilstein"} +is_a: CHEBI:59724 ! ribonucleoside triphosphate oxoanion +relationship: has_role CHEBI:23357 ! cofactor +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:30616 ! ATP(4-) +relationship: is_conjugate_base_of CHEBI:15422 ! ATP +relationship: is_conjugate_base_of CHEBI:237958 ! ({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate + [Term] id: CHEBI:57652 name: chondroitin D-glucuronate anion @@ -9387,6 +10452,17 @@ synonym: "chondroitin D-glucuronate polyanion" RELATED [ChEBI] is_a: CHEBI:61469 ! polyanionic polymer relationship: is_conjugate_base_of CHEBI:16137 ! chondroitin D-glucuronate +[Term] +id: CHEBI:57867 +name: nucleoside 5'-phosphate dianion +namespace: chebi_ontology +def: "The conjugate base of a nucleoside 5'-phosphate." [] +subset: 3_STAR +synonym: "a nucleoside 5'-phosphate" RELATED [UniProt] +synonym: "nucleoside 5'-phosphate dianions" RELATED [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:16701 ! nucleoside 5'-phosphate + [Term] id: CHEBI:57887 name: tryptaminium @@ -9404,6 +10480,21 @@ relationship: has_role CHEBI:76924 ! plant metabolite relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_acid_of CHEBI:16765 ! tryptamine +[Term] +id: CHEBI:57930 +name: nucleoside 5'-diphosphate(3-) +namespace: chebi_ontology +def: "Trianion of nucleoside diphosphate arising from deprotonation of all three free OH groups of the diphosphate; major species at pH 7.3." [] +subset: 3_STAR +synonym: "a ribonucleoside 5'-diphosphate" RELATED [UniProt] +synonym: "NDP trianion" RELATED [ChEBI] +synonym: "NDP(3-)" RELATED [ChEBI] +synonym: "nucleoside diphosphate trianion" RELATED [ChEBI] +synonym: "ribonucleoside diphosphate trianion" RELATED [ChEBI] +synonym: "ribonucleoside diphosphate(3-)" RELATED [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:16862 ! nucleoside 5'-diphosphate + [Term] id: CHEBI:57977 name: bilirubin(2-) @@ -9419,6 +10510,21 @@ is_a: CHEBI:59252 ! linear tetrapyrrole anion relationship: has_role CHEBI:77746 ! human metabolite relationship: is_conjugate_base_of CHEBI:16990 ! bilirubin IXalpha +[Term] +id: CHEBI:58104 +name: nucleoside 5'-triphoshate(3-) +namespace: chebi_ontology +def: "Trianion of nucleoside triphosphate arising from deprotonation of three of the four free triphosphate OH groups." [] +subset: 3_STAR +synonym: "NTP trianion" RELATED [ChEBI] +synonym: "NTP(3-)" RELATED [ChEBI] +synonym: "nucleoside triphosphate trianion" RELATED [ChEBI] +synonym: "ribonucleoside triphosphate trianion" RELATED [ChEBI] +synonym: "ribonucleoside triphosphate(3-)" RELATED [ChEBI] +is_a: CHEBI:59724 ! ribonucleoside triphosphate oxoanion +relationship: is_conjugate_acid_of CHEBI:61557 ! nucleoside 5'-triphoshate(4-) +relationship: is_conjugate_base_of CHEBI:17326 ! nucleoside 5'-triphoshate + [Term] id: CHEBI:58432 name: histaminium @@ -9526,6 +10632,17 @@ def: "Compounds containing one or more phosphoric acid units." [] subset: 3_STAR is_a: CHEBI:33457 ! phosphorus oxoacid +[Term] +id: CHEBI:59724 +name: ribonucleoside triphosphate oxoanion +namespace: chebi_ontology +def: "An organophosphate anion resulting from deprotonation of at least one of the acidic hydroxy groups from the triphosphate moiety of a nucleoside triphosphate." [] +subset: 3_STAR +synonym: "ribonucleoside triphosphate anion" RELATED [ChEBI] +synonym: "ribonucleoside triphosphate anions" RELATED [ChEBI] +synonym: "ribonucleoside triphosphate oxoanions" RELATED [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion + [Term] id: CHEBI:59740 name: nucleophilic reagent @@ -9767,6 +10884,25 @@ is_a: CHEBI:33833 ! heteroarene is_a: CHEBI:51143 ! nitrogen molecular entity relationship: has_functional_parent CHEBI:18282 ! nucleobase +[Term] +id: CHEBI:61293 +name: adenyl nucleotide +namespace: chebi_ontology +def: "A nucleotide having adenine as the base." [] +subset: 3_STAR +synonym: "adenine nucleotide" RELATED [SUBMITTER] +is_a: CHEBI:26395 ! purine nucleotide + +[Term] +id: CHEBI:61296 +name: adenyl ribonucleotide +namespace: chebi_ontology +def: "A purine riboncleotide where adenine is the purine." [] +subset: 3_STAR +synonym: "adenine ribonucleotide" RELATED [SUBMITTER] +is_a: CHEBI:26400 ! purine ribonucleotide +is_a: CHEBI:61293 ! adenyl nucleotide + [Term] id: CHEBI:61313 name: C21-steroid @@ -9787,6 +10923,20 @@ synonym: "polyanions" RELATED [ChEBI] is_a: CHEBI:60164 ! ionic polymer relationship: has_part CHEBI:53309 ! polyanionic macromolecule +[Term] +id: CHEBI:61557 +name: nucleoside 5'-triphoshate(4-) +namespace: chebi_ontology +def: "A ribonucleoside triphosphate oxoanion arising from global deprotonation of the triphosphate groups of any nucleoside triphosphate; major species at pH 7.3." [] +subset: 3_STAR +synonym: "a ribonucleoside 5'-triphosphate" RELATED [UniProt] +synonym: "NTP tetraanion" RELATED [ChEBI] +synonym: "NTP(4-)" RELATED [SUBMITTER] +synonym: "nucleoside 5'-triphosphate tetraanion" RELATED [ChEBI] +synonym: "nucleoside triphosphate(4-)" RELATED [ChEBI] +is_a: CHEBI:59724 ! ribonucleoside triphosphate oxoanion +relationship: is_conjugate_base_of CHEBI:58104 ! nucleoside 5'-triphoshate(3-) + [Term] id: CHEBI:62031 name: polar amino acid zwitterion @@ -9833,6 +10983,15 @@ synonym: "glycosylceramides" RELATED [ChEBI] is_a: CHEBI:17761 ! ceramide is_a: CHEBI:24402 ! glycosphingolipid +[Term] +id: CHEBI:63161 +name: glycosyl compound +namespace: chebi_ontology +def: "A carbohydrate derivative arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to an oxygen, carbon, nitrogen or sulfur atom of a separate entity." [] +subset: 3_STAR +synonym: "glycosyl compounds" RELATED [ChEBI] +is_a: CHEBI:63299 ! carbohydrate derivative + [Term] id: CHEBI:63248 name: oxidising agent @@ -9864,6 +11023,26 @@ synonym: "derivatized carbohydrates" RELATED [ChEBI] is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives relationship: has_functional_parent CHEBI:16646 ! carbohydrate +[Term] +id: CHEBI:63367 +name: monosaccharide derivative +namespace: chebi_ontology +def: "A carbohydrate derivative that is formally obtained from a monosaccharide." [] +subset: 3_STAR +synonym: "monosaccharide derivatives" RELATED [ChEBI] +is_a: CHEBI:63299 ! carbohydrate derivative +relationship: has_functional_parent CHEBI:35381 ! monosaccharide + +[Term] +id: CHEBI:63409 +name: pentose derivative +namespace: chebi_ontology +def: "A monosaccharide derivative that is formally obtained from a pentose." [] +subset: 3_STAR +synonym: "pentose derivatives" RELATED [ChEBI] +is_a: CHEBI:63367 ! monosaccharide derivative +relationship: has_functional_parent CHEBI:25901 ! pentose + [Term] id: CHEBI:63436 name: carbohydrate acid derivative @@ -10848,6 +12027,16 @@ synonym: "non-proteinogenic alpha-amino-acids" RELATED [ChEBI] is_a: CHEBI:33704 ! alpha-amino acid is_a: CHEBI:83820 ! non-proteinogenic amino acid +[Term] +id: CHEBI:84055 +name: pentose phosphate +namespace: chebi_ontology +def: "Any phospho sugar that is the phosphate derivative of pentose." [] +subset: 3_STAR +synonym: "pentose phosphates" RELATED [ChEBI] +is_a: CHEBI:33447 ! phospho sugar +is_a: CHEBI:63409 ! pentose derivative + [Term] id: CHEBI:84087 name: human urinary metabolite @@ -10875,6 +12064,18 @@ subset: 3_STAR synonym: "algal metabolites" RELATED [ChEBI] is_a: CHEBI:75763 ! eukaryotic metabolite +[Term] +id: CHEBI:87518 +name: ADP(2-) +namespace: chebi_ontology +def: "An organophosphate oxoanion obtained by deprotonation of two of the three diphosphate OH groups of adenosine 5'-diphosphate." [] +subset: 3_STAR +synonym: "5'-O-{[(hydroxyphosphinato)oxy]phosphinato}adenosine" EXACT IUPAC_NAME [IUPAC] +xref: Reaxys:7558006 {source="Reaxys"} +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_acid_of CHEBI:456216 ! ADP(3-) +relationship: is_conjugate_base_of CHEBI:16761 ! ADP + [Term] id: CHEBI:90710 name: receptor modulator @@ -11202,6 +12403,7 @@ id: CL:0000034 name: stem cell def: "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:D013234] comment: This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’. +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "animal stem cell" EXACT [] xref: CALOHA:TS-2086 @@ -11311,6 +12513,7 @@ id: CL:0000039 name: germ line cell def: "A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544] comment: Originally this term had some plant germ line cell children. +subset: general_cell_types_upper_slim subset: ubprop:upper_level is_a: CL:0000003 ! native cell disjoint_from: CL:0002371 ! somatic cell @@ -11467,10 +12670,12 @@ id: CL:0000057 name: fibroblast def: "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped." [http://en.wikipedia.org/wiki/Fibroblast, ISBN:0517223651, MESH:D005347] comment: These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative. +subset: general_cell_types_upper_slim subset: human_reference_atlas xref: BTO:0000452 xref: CALOHA:TS-0362 xref: FMA:63877 +xref: NCIT:C12482 xref: VHOG:0001482 is_a: CARO:0000000 ! anatomical entity is_a: CL:0002320 ! connective tissue cell @@ -11570,6 +12775,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: CL:0000066 name: epithelial cell def: "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:D004847] +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "epitheliocyte" EXACT [] xref: BTO:0000414 @@ -11679,6 +12885,7 @@ relationship: part_of UBERON:0000179 ! haemolymphatic fluid id: CL:0000081 name: blood cell def: "A cell found predominately in the blood." [GOC:add, GOC:tfm] +subset: general_cell_types_upper_slim xref: FMA:62844 xref: MESH:D001773 is_a: CL:0000988 {is_inferred="true"} ! hematopoietic cell @@ -11720,6 +12927,7 @@ relationship: part_of UBERON:0001264 ! pancreas id: CL:0000084 name: T cell def: "A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149] +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "immature T cell" RELATED [] synonym: "mature T cell" RELATED [] @@ -11979,6 +13187,7 @@ relationship: has_soma_location UBERON:0002129 ! cerebellar cortex [Term] id: CL:0000120 name: granule cell +def: "A neuron of the vertebrate central nervous system that is small in size. This general class includes small neurons in the granular layer of the cerebellar cortex, cerebral cortex neurons that are not pyramidal cells and small neurons without axons found in the olfactory bulb." [https://medical-dictionary.thefreedictionary.com/granule+cell] xref: BTO:0003393 is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) @@ -12023,6 +13232,7 @@ id: CL:0000125 name: glial cell def: "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons." [MESH:D009457] comment: Not all glial cells develop from glioblasts, with microglia developing from the mesoderm instead. See https://github.com/obophenotype/cell-ontology/issues/1571 +subset: general_cell_types_upper_slim synonym: "neuroglia" RELATED [] synonym: "neuroglial cell" EXACT [] xref: BTO:0002606 @@ -12122,6 +13332,7 @@ relationship: develops_from CL:0000057 ! fibroblast id: CL:0000136 name: fat cell def: "A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of triglycerides." [MESH:D017667] +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "adipocyte" EXACT [] synonym: "adipose cell" EXACT [] @@ -12195,6 +13406,7 @@ is_a: CL:0000325 ! stuff accumulating cell id: CL:0000148 name: melanocyte def: "A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [SANBI:mhl] +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "melanophore" NARROW [] xref: BTO:0000847 @@ -12247,6 +13459,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: CL:0000152 name: exocrine cell def: "A cell of an exocrine gland; i.e. a gland that discharges its secretion via a duct." [ISBN:0198547684] +subset: general_cell_types_upper_slim xref: FMA:16014 is_a: CL:0000151 ! secretory cell is_a: CL:0000548 ! animal cell @@ -12295,7 +13508,7 @@ relationship: capable_of GO:0043129 ! surfactant homeostasis [Term] id: CL:0000158 name: club cell -def: "A non-mucous, epithelial secretory cell that is part of the tracheobronchial tree. A club cell has short microvilli but no cilia. A club cell is able to multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium and it also protects the tracheobronchial epithelium." [DOI:10.1183/09031936.00146609, DOI:https\://doi.org/10.1378/chest.12-2762, GOC:tfm, PMID:28128362, PMID:29874100, PMID:7905712] +def: "A non-mucous, epithelial secretory cell that is part of the tracheobronchial tree. A club cell has short microvilli but no cilia. A club cell is able to multiply and differentiate into ciliated cells to regenerate the bronchiolar epithelium and it also protects the tracheobronchial epithelium." [DOI:10.1183/09031936.00146609, DOI:10.1378/chest.12-2762, GOC:tfm, PMID:28128362, PMID:29874100, PMID:7905712] subset: human_reference_atlas synonym: "Clara cell" EXACT [] xref: BTO:0004811 @@ -12348,6 +13561,7 @@ is_a: CL:0002659 ! glandular cell of stomach id: CL:0000163 name: endocrine cell def: "A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions." [MESH:D055098] +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "endocrinocyte" EXACT [] xref: FMA:83809 @@ -12630,6 +13844,7 @@ relationship: develops_from CL:0000056 ! myoblast id: CL:0000188 name: cell of skeletal muscle def: "A somatic cell located in skeletal muscle." [GOC:tfm] +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "skeletal muscle cell" EXACT [] xref: BTO:0004392 @@ -12663,6 +13878,7 @@ relationship: develops_from CL:0000858 ! fast muscle myoblast id: CL:0000192 name: smooth muscle cell def: "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [http://en.wikipedia.org/wiki/Smooth_muscle_cell, MESH:D032389, PMID:9315361] +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "myocytes, smooth muscle" EXACT [MESH:D032389] synonym: "non-striated muscle cell" BROAD [] @@ -12964,14 +14180,8 @@ is_a: CL:0000081 ! blood cell is_a: CL:0000225 ! anucleate cell is_a: CL:0000458 ! serotonin secreting cell is_a: CL:0000763 {is_inferred="true"} ! myeloid cell -intersection_of: CL:0000763 ! myeloid cell -intersection_of: capable_of GO:0007596 ! blood coagulation -intersection_of: capable_of GO:0008015 ! blood circulation -intersection_of: has_characteristic PATO:0001405 ! anucleate -intersection_of: has_characteristic PATO:0001874 ! discoid relationship: capable_of GO:0001820 ! serotonin secretion -relationship: capable_of GO:0007596 ! blood coagulation -relationship: capable_of GO:0008015 ! blood circulation +relationship: capable_of_part_of GO:0007596 ! blood coagulation relationship: develops_from CL:0000556 ! megakaryocyte relationship: has_characteristic PATO:0001405 ! anucleate relationship: has_characteristic PATO:0001874 ! discoid @@ -12998,6 +14208,7 @@ name: macrophage def: "A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GO_REF:0000031, GOC:add, GOC:tfm, PMID:16213494, PMID:1919437] comment: Morphology: Diameter 30_M-80 _M, abundant cytoplasm, low N/C ratio, eccentric nucleus. Irregular shape with pseudopods, highly adhesive. Contain vacuoles and phagosomes, may contain azurophilic granules; markers: Mouse & Human: CD68, in most cases CD11b. Mouse: in most cases F4/80+; role or process: immune, antigen presentation, & tissue remodelling; lineage: hematopoietic, myeloid. subset: blood_and_immune_upper_slim +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "histiocyte" EXACT [] xref: BTO:0000801 @@ -13024,6 +14235,7 @@ id: CL:0000236 name: B cell def: "A lymphocyte of B lineage that is capable of B cell mediated immunity." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] subset: blood_and_immune_upper_slim +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "B lymphocyte" EXACT [] synonym: "B-cell" EXACT [] @@ -13351,6 +14563,7 @@ relationship: part_of UBERON:0001776 ! optic choroid [Term] id: CL:0000349 name: extraembryonic cell +subset: general_cell_types_upper_slim is_a: CARO:0000000 ! anatomical entity is_a: CL:0002371 ! somatic cell intersection_of: CL:0000548 ! animal cell @@ -13627,9 +14840,12 @@ relationship: capable_of GO:0036160 ! melanocyte-stimulating hormone secretion [Term] id: CL:0000441 -name: follicle stem cell +name: follicle stem cell (sensu Arthropoda) +def: "A stem cell that gives rise to the follicle cells that surround the oocyte in female arthropods." [doi:10.1016/B978-012369493-5.50005-5, doi:10.1038/s41467-020-19361-0, doi:10.1242/dev.121.11.3797] +synonym: "somatic stem cell" BROAD [doi:10.1016/j.devcel.2005.08.012] xref: FBbt:00004903 is_a: CL:0000036 ! epithelial fate stem cell +relationship: only_in_taxon NCBITaxon:6656 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/obophenotype/cell-ontology/issues/1943"} ! Arthropoda [Term] id: CL:0000443 @@ -13699,6 +14915,7 @@ relationship: part_of UBERON:0001348 ! brown adipose tissue id: CL:0000451 name: dendritic cell def: "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149] +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "interdigitating cell" RELATED [] synonym: "veiled cell" RELATED [] @@ -13841,7 +15058,7 @@ synonym: "ovarian follicle cell" BROAD [] xref: FBbt:00004904 is_a: CL:0000500 ! follicular epithelial cell is_a: CL:2000064 ! ovarian surface epithelial cell -relationship: develops_from CL:0000441 ! follicle stem cell +relationship: develops_from CL:0000441 ! follicle stem cell (sensu Arthropoda) relationship: only_in_taxon NCBITaxon:50557 {source="https://github.com/obophenotype/cell-ontology/issues/589"} ! Insecta relationship: part_of UBERON:0000992 ! ovary @@ -13875,6 +15092,7 @@ is_a: CL:0000099 ! interneuron id: CL:0000499 name: stromal cell def: "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [GOC:tfm, MESH:D017154] +subset: general_cell_types_upper_slim subset: human_reference_atlas xref: BTO:0002064 xref: FMA:83624 @@ -14052,6 +15270,7 @@ id: CL:0000540 name: neuron def: "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [http://en.wikipedia.org/wiki/Neuron, MESH:D009474] comment: These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma. +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "nerve cell" EXACT [] xref: BTO:0000938 @@ -14548,6 +15767,7 @@ name: monocyte def: "Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells." [GO_REF:0000031, MESH:D009000] comment: Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid. subset: blood_and_immune_upper_slim +subset: general_cell_types_upper_slim subset: human_reference_atlas xref: BTO:0000876 xref: CALOHA:TS-0638 @@ -14573,6 +15793,7 @@ id: CL:0000586 name: germ cell def: "The reproductive cell in multicellular organisms." [MESH:D005854] xref: BTO:0000535 +xref: NCIT:C12597 xref: VHOG:0001534 xref: WBbt:0006796 is_a: CL:0000039 {is_inferred="true"} ! germ line cell @@ -15121,12 +16342,10 @@ relationship: capable_of GO:0048103 ! somatic stem cell division [Term] id: CL:0000731 name: urothelial cell -def: "A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." [GOC:tfm, MA:ma] -synonym: "bladder transitional cell" NARROW [] -synonym: "transitional epithelial cell of urinary bladder" NARROW [] +def: "A cell of a layer of transitional epithelium in the wall of the proximal urethra, bladder, ureter or renal pelvis, external to the lamina propria." [doi:10.1038/s41385-022-00565-0, GOC:tfm, MA:ma] synonym: "urinary tract transitional epithelial cell" NARROW [] xref: FMA:84127 -is_a: CL:0000244 {is_inferred="true"} ! transitional epithelial cell +is_a: CL:0000244 ! transitional epithelial cell is_a: CL:0002371 {is_inferred="true"} ! somatic cell is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: CL:0000244 ! transitional epithelial cell @@ -15160,6 +16379,7 @@ xref: BTO:0000751 xref: CALOHA:TS-0549 xref: FMA:62852 xref: MESH:D007962 +xref: NCIT:C12529 is_a: CARO:0000000 ! anatomical entity is_a: CL:0000219 ! motile cell is_a: CL:0000988 {is_inferred="true"} ! hematopoietic cell @@ -15209,6 +16429,7 @@ name: cardiac muscle cell alt_id: FMA:83808 def: "Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. In mammals, the contractile fiber resembles those of skeletal muscle but are only one third as large in diameter, are richer in sarcoplasm, and contain centrally located instead of peripheral nuclei." [GOC:mtg_cardiacconduct_nov11, GOC:tfm, ISBN:0323052908, PMID:22426062, PMID:4711263] comment: This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction. +subset: general_cell_types_upper_slim subset: human_reference_atlas synonym: "cardiac muscle fiber" EXACT [GO:0048739] synonym: "cardiac myocyte" EXACT [] @@ -17004,6 +18225,7 @@ relationship: has_soma_location UBERON:0002421 ! hippocampal formation id: CL:0001035 name: bone cell def: "A connective tissue cell found in bone." [GO_REF:0000034, GOC:add] +subset: general_cell_types_upper_slim subset: human_reference_atlas is_a: CL:0000548 {is_inferred="true"} ! animal cell intersection_of: CL:0000548 ! animal cell @@ -17978,6 +19200,7 @@ intersection_of: capable_of GO:0043129 ! surfactant homeostasis relationship: capable_of GO:0032940 ! secretion by cell relationship: capable_of GO:0043129 ! surfactant homeostasis property_value: dc-contributor https://orcid.org/0000-0003-1980-3228 +relationship: develops_from CL:4040003 ! fetal pre-type II pneumocyte relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens creation_date: 2010-06-24T12:04:13Z @@ -22423,6 +23646,7 @@ relationship: part_of UBERON:0000018 ! compound eye id: CL:0009004 name: retinal cell def: "Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [GOC:pr] +subset: general_cell_types_upper_slim xref: PMID:10702418 is_a: CL:0002319 ! neural cell intersection_of: CL:0002319 ! neural cell @@ -24974,11 +26198,7 @@ name: urothelial cell of trigone of urinary bladder def: "An urothelial cell that is part of the trigone of urinary bladder." [GOC:tfm] synonym: "epithelial cell of vesical trigone" EXACT [FMA:70598] xref: FMA:70598 -is_a: CL:0000731 {is_inferred="true"} ! urothelial cell -is_a: CL:1001319 ! bladder cell -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure -intersection_of: CL:0000731 ! urothelial cell -intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder +is_a: CL:1001428 ! bladder urothelial cell relationship: part_of UBERON:0001257 ! trigone of urinary bladder [Term] @@ -25272,10 +26492,12 @@ relationship: part_of UBERON:0002353 ! bundle of His [Term] id: CL:1000486 name: basal cell of urothelium -def: "A basal cell that is part of the urothelium." [GOC:tfm] +def: "A basal cell that is part of the urothelium. Compared to other urothelial cell types, a basal cell of the urothelium is positioned along the basement membrane, is the most undifferentiated and serves a progenitor role." [doi:10.1038/s41385-022-00565-0, GOC:tfm] +comment: It has been noted in at least some mammalian species that the urothelial basal cell type is distinguished by expression of high levels of cytokeratin-5 (CK5), p63 and the signalling molecule Sonic hedgehog (Shh). Similar to intermediate cells, the urothelial basal cell type expresses CK17 but is negative for uroplakins (UPK) and CK20. Urothelial basal cells have also been noted to be smaller in diameter than urothelial intermediate cells. {xref="doi:10.1038/s41385-022-00565-0"} +synonym: "urothelial basal cell" EXACT [doi:10.1007/978-3-030-14366-4_8, doi:10.1111/cpr.13170] xref: FMA:84150 is_a: CL:0000646 {is_inferred="true"} ! basal cell -is_a: UBERON:0004119 ! endoderm-derived structure +is_a: CL:0000731 ! urothelial cell intersection_of: CL:0000646 ! basal cell intersection_of: part_of UBERON:0000365 ! urothelium relationship: part_of UBERON:0000365 ! urothelium @@ -26417,10 +27639,14 @@ relationship: part_of UBERON:0000057 ! urethra [Term] id: CL:1001428 name: bladder urothelial cell +def: "A urothelial cell that is part of the urothelium of the urinary bladder." [doi:10.1038/s41385-022-00565-0] subset: human_reference_atlas +synonym: "bladder transitional cell" NARROW [] +synonym: "transitional epithelial cell of urinary bladder" NARROW [] xref: KUPO:0001121 -is_a: CL:0000731 {is_inferred="true"} ! urothelial cell -is_a: CL:1001319 {is_inferred="true"} ! bladder cell +xref: NCIT:C32210 +is_a: CL:0000731 ! urothelial cell +is_a: CL:1001319 ! bladder cell is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: CL:0000731 ! urothelial cell intersection_of: part_of UBERON:0004645 ! urinary bladder urothelium @@ -28450,7 +29676,7 @@ creation_date: 2022-01-20T12:59:06Z [Term] id: CL:4030001 name: stromal cell of thymus -def: "A stromal cell that is part of the thymus." [https://www.nature.com/articles/s41467-020-20082-7] +def: "A stromal cell that is part of the thymus." [doi:10.1038/s41467-020-20082-7] synonym: "thymic stromal cell" EXACT [] is_a: CL:0000499 ! stromal cell is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure @@ -28644,7 +29870,7 @@ relationship: part_of UBERON:0001754 ! dental pulp [Term] id: CL:4030040 name: endometrial ciliated epithelial cell -def: "A ciliated cell of the endometrial epithelium. The cilia of this cell type help move mucus from glandular tissue of the endometrium." [https://www.nature.com/articles/s41591-020-1040-z, https://www.proteinatlas.org/humanproteome/single+cell+type/Glandular+epithelial+cells#endometrialciliatedcells] +def: "A ciliated cell of the endometrial epithelium. The cilia of this cell type help move mucus from glandular tissue of the endometrium." [doi:10.1038/s41591-020-1040-z, https://www.proteinatlas.org/humanproteome/single+cell+type/Glandular+epithelial+cells#endometrialciliatedcells] comment: In human samples, the expression of FOXJ1 protein, a regulator for motile cilia with epithelial lineage identity, has been noted. {xref="ttps://www.nature.com/articles/s41591-020-1040-z"} synonym: "ciliated cell of the endometrium" EXACT [] synonym: "ciliated cell of the uterus" BROAD [] @@ -28965,6 +30191,16 @@ property_value: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: expresses PR:000007939 ! glial fibrillary acidic protein relationship: part_of UBERON:0002005 ! enteric nervous system +[Term] +id: CL:4040003 +name: fetal pre-type II pneumocyte +def: "Precursor of type II pneumocyte. These cells do not have lamellar bodies, which are a marker of type II pneumocyte maturity." [PMID:1316350] +synonym: "fetal alveolar pre-type II epithelial cell" EXACT [PMID:9624168] +synonym: "fetal pre-type 2 pneumocyte" EXACT [https://orcid.org/0000-0002-0819-0473] +synonym: "fetal pre-type II alveolar epithelial cell" EXACT [PMID:12114192] +is_a: CL:0000322 ! pneumocyte +property_value: dc-contributor https://orcid.org/0000-0002-0819-0473 + [Term] id: GO:0000003 name: reproduction @@ -29041,7 +30277,7 @@ is_a: GO:1905037 ! autophagosome organization intersection_of: GO:0022607 ! cellular component assembly intersection_of: results_in_assembly_of GO:0005776 ! autophagosome relationship: has_part GO:0019778 ! Atg12 activating enzyme activity -relationship: has_part GO:0019786 ! Atg8-specific peptidase activity +relationship: has_part GO:0019786 ! protein-phosphatidylethanolamide deconjugating activity relationship: has_part GO:0061651 ! Atg12 conjugating enzyme activity relationship: has_part GO:0061660 ! Atg12 ligase activity relationship: results_in_assembly_of GO:0005776 ! autophagosome @@ -29074,6 +30310,21 @@ intersection_of: bounding_layer_of GO:0005794 ! Golgi apparatus relationship: bounding_layer_of GO:0005794 ! Golgi apparatus relationship: part_of GO:0005794 ! Golgi apparatus +[Term] +id: GO:0000166 +name: nucleotide binding +namespace: molecular_function +def: "Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose." [GOC:mah, ISBN:0198547684] +subset: goslim_chembl +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +is_a: GO:0036094 ! small molecule binding +is_a: GO:1901265 ! nucleoside phosphate binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:36976 ! nucleotide +relationship: has_input CHEBI:36976 ! nucleotide + [Term] id: GO:0000226 name: microtubule cytoskeleton organization @@ -29169,6 +30420,18 @@ intersection_of: GO:0048285 ! organelle fission intersection_of: results_in_fission_of GO:0005634 ! nucleus relationship: results_in_fission_of GO:0005634 ! nucleus +[Term] +id: GO:0000295 +name: adenine nucleotide transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of adenine nucleotides (AMP, ADP, and ATP) from one side of a membrane to the other." [PMID:11566870] +xref: Reactome:R-HSA-389652 "PMP34-mediated exchange of cytosolic ATP for peroxisomal AMP" +is_a: GO:0015216 ! purine nucleotide transmembrane transporter activity +intersection_of: GO:0015215 ! nucleotide transmembrane transporter activity +intersection_of: has_primary_input CHEBI:61293 ! adenyl nucleotide +relationship: has_primary_input CHEBI:61293 ! adenyl nucleotide +relationship: part_of GO:0051503 ! adenine nucleotide transport + [Term] id: GO:0000313 name: organellar ribosome @@ -29378,6 +30641,8 @@ id: GO:0001505 name: regulation of neurotransmitter levels namespace: biological_process def: "Any process that modulates levels of neurotransmitter." [GOC:jl] +relationship: in_taxon NCBITaxon:6072 ! Eumetazoa +relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa [Term] id: GO:0001508 @@ -29576,6 +30841,80 @@ is_a: GO:0000226 ! microtubule cytoskeleton organization relationship: has_participant GO:0005874 ! microtubule relationship: results_in_formation_of GO:0097427 ! microtubule bundle +[Term] +id: GO:0001609 +name: G protein-coupled adenosine receptor activity +namespace: molecular_function +alt_id: GO:0001610 +alt_id: GO:0001611 +alt_id: GO:0001612 +alt_id: GO:0001613 +alt_id: GO:0008501 +def: "Combining with adenosine and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." [GOC:bf, GOC:mah, PMID:9755289] +synonym: "A1 adenosine receptor activity, G protein coupled" NARROW [] +synonym: "A1 adenosine receptor activity, G-protein coupled" NARROW [] +synonym: "A2A adenosine receptor activity, G protein coupled" NARROW [] +synonym: "A2A adenosine receptor activity, G-protein coupled" NARROW [] +synonym: "A2B adenosine receptor activity, G protein coupled" NARROW [] +synonym: "A2B adenosine receptor activity, G-protein coupled" NARROW [] +synonym: "A3 adenosine receptor activity, G protein coupled" NARROW [] +synonym: "A3 adenosine receptor activity, G-protein coupled" NARROW [] +synonym: "adenosine nucleotide receptor" BROAD [] +synonym: "adenosine receptor activity, G protein coupled" EXACT [] +synonym: "adenosine receptor activity, G-protein coupled" EXACT [GOC:bf] +synonym: "G protein coupled A1 adenosine receptor activity" NARROW [] +synonym: "G protein coupled A2A adenosine receptor activity" NARROW [] +synonym: "G protein coupled A2B adenosine receptor activity" NARROW [] +synonym: "G protein coupled A3 adenosine receptor activity" NARROW [] +synonym: "G protein coupled adenosine receptor activity" EXACT [] +synonym: "G-protein coupled adenosine receptor activity" EXACT [] +synonym: "G-protein-coupled A1 adenosine receptor activity" NARROW [] +synonym: "G-protein-coupled A2A adenosine receptor activity" NARROW [] +synonym: "G-protein-coupled A2B adenosine receptor activity" NARROW [] +synonym: "G-protein-coupled A3 adenosine receptor activity" NARROW [] +synonym: "P1 receptor" EXACT [PMID:9755289] +is_a: GO:0004930 ! G protein-coupled receptor activity +intersection_of: GO:0004930 ! G protein-coupled receptor activity +intersection_of: has_input CHEBI:16335 ! adenosine +relationship: has_input CHEBI:16335 ! adenosine +relationship: part_of GO:0001973 ! G protein-coupled adenosine receptor signaling pathway + +[Term] +id: GO:0001614 +name: purinergic nucleotide receptor activity +namespace: molecular_function +alt_id: GO:0035586 +def: "Combining with a purine nucleotide and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity." [GOC:mah, GOC:signaling] +synonym: "P2 receptor" RELATED [PMID:9755289] +synonym: "purinergic receptor activity" RELATED [] +synonym: "purinoceptor" EXACT [PMID:9755289] +synonym: "purinoreceptor" EXACT [PMID:9755289] +is_a: GO:0016502 ! nucleotide receptor activity +intersection_of: GO:0038023 ! signaling receptor activity +intersection_of: has_input CHEBI:26395 ! purine nucleotide +relationship: has_input CHEBI:26395 ! purine nucleotide +relationship: has_part GO:0017076 ! purine nucleotide binding +relationship: part_of GO:0035590 ! purinergic nucleotide receptor signaling pathway +created_by: bf +creation_date: 2010-10-22T10:57:12Z + +[Term] +id: GO:0001621 +name: G protein-coupled ADP receptor activity +namespace: molecular_function +alt_id: GO:0045032 +def: "Combining with ADP and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." [GOC:mah, GOC:signaling, PMID:11196645] +synonym: "ADP receptor activity" BROAD [] +synonym: "ADP-activated adenosine receptor activity" RELATED [] +synonym: "ADP-activated nucleotide receptor activity" BROAD [] +synonym: "K101 receptor" NARROW [] +synonym: "platelet ADP receptor activity" NARROW [GOC:mah] +is_a: GO:0004930 ! G protein-coupled receptor activity +intersection_of: GO:0004930 ! G protein-coupled receptor activity +intersection_of: has_input CHEBI:456216 ! ADP(3-) +relationship: has_input CHEBI:456216 ! ADP(3-) +relationship: has_part GO:0043531 ! ADP binding + [Term] id: GO:0001649 name: osteoblast differentiation @@ -30137,6 +31476,8 @@ def: "A multicellular organismal process by which exposure to an activating fact subset: goslim_pir is_a: GO:0009987 ! cellular process is_a: GO:0032501 ! multicellular organismal process +relationship: in_taxon NCBITaxon:33208 ! Metazoa +relationship: only_in_taxon NCBITaxon:33208 ! Metazoa [Term] id: GO:0001776 @@ -30607,6 +31948,30 @@ intersection_of: has_input UBERON:0003890 ! Mullerian duct relationship: has_input UBERON:0003890 ! Mullerian duct relationship: part_of GO:0046661 ! male sex differentiation +[Term] +id: GO:0001882 +name: nucleoside binding +namespace: molecular_function +def: "Binding to a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose." [GOC:hjd] +subset: goslim_pir +is_a: GO:0036094 ! small molecule binding +is_a: GO:0097159 ! organic cyclic compound binding +is_a: GO:0097367 ! carbohydrate derivative binding +is_a: GO:1901363 ! heterocyclic compound binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:33838 ! nucleoside +relationship: has_input CHEBI:33838 ! nucleoside + +[Term] +id: GO:0001883 +name: purine nucleoside binding +namespace: molecular_function +def: "Binding to a purine nucleoside, a compound consisting of a purine base linked either to ribose or deoxyribose." [GOC:hjd] +is_a: GO:0001882 ! nucleoside binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:26394 ! purine nucleoside +relationship: has_input CHEBI:26394 ! purine nucleoside + [Term] id: GO:0001885 name: endothelial cell development @@ -30997,6 +32362,17 @@ is_a: GO:0007268 ! chemical synaptic transmission relationship: has_participant CHEBI:59905 ! dopaminium(1+) relationship: has_participant CL:0000700 ! dopaminergic neuron +[Term] +id: GO:0001973 +name: G protein-coupled adenosine receptor signaling pathway +namespace: biological_process +def: "The series of molecular signals generated as a consequence of a receptor binding to extracellular adenosine and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity." [GOC:dph] +synonym: "adenosine receptor signaling pathway" RELATED [] +synonym: "adenosine receptor signaling pathway, G-protein coupled" EXACT [PMID:9755289] +synonym: "adenosine receptor signalling pathway" EXACT [GOC:mah] +synonym: "P1 receptor signaling pathway" EXACT [PMID:9755289] +is_a: GO:0035588 ! G protein-coupled purinergic receptor signaling pathway + [Term] id: GO:0001976 name: nervous system process involved in regulation of systemic arterial blood pressure @@ -31221,6 +32597,29 @@ intersection_of: GO:0005488 ! binding intersection_of: has_input CHEBI:18282 ! nucleobase relationship: has_input CHEBI:18282 ! nucleobase +[Term] +id: GO:0002055 +name: adenine binding +namespace: molecular_function +def: "Binding to adenine, a purine base." [GOC:hjd] +synonym: "6-aminopurine binding" EXACT [] +is_a: GO:0002060 ! purine nucleobase binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:16708 ! adenine +relationship: has_input CHEBI:16708 ! adenine + +[Term] +id: GO:0002060 +name: purine nucleobase binding +namespace: molecular_function +def: "Binding to a purine nucleobase, an organic nitrogenous base with a purine skeleton." [GOC:hjd] +synonym: "purine base binding" EXACT [GOC:go_curators] +synonym: "purine binding" RELATED [] +is_a: GO:0002054 ! nucleobase binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:26386 ! purine nucleobase +relationship: has_input CHEBI:26386 ! purine nucleobase + [Term] id: GO:0002062 name: chondrocyte differentiation @@ -37228,6 +38627,7 @@ def: "The specification and formation of anisotropic intracellular organization is_a: GO:0030010 ! establishment of cell polarity intersection_of: GO:0030010 ! establishment of cell polarity intersection_of: part_of GO:0001667 ! ameboidal-type cell migration +relationship: never_in_taxon NCBITaxon:4751 ! Fungi relationship: part_of GO:0001667 ! ameboidal-type cell migration created_by: dph creation_date: 2009-12-08T04:50:41Z @@ -37737,20 +39137,6 @@ synonym: "enzyme activity" EXACT [GOC:dph, GOC:tb] xref: Wikipedia:Enzyme is_a: GO:0003674 ! molecular_function -[Term] -id: GO:0004176 -name: ATP-dependent peptidase activity -namespace: molecular_function -alt_id: GO:0004280 -def: "Catalysis of the hydrolysis of peptide bonds, driven by ATP hydrolysis." [GOC:mah] -synonym: "ATP-dependent proteolysis" RELATED [GOC:mah] -xref: Reactome:R-HSA-9698929 "pPR-AP:pAP cleaves the MCP:pPR-AP:pAP Complex" -is_a: GO:0008233 ! peptidase activity -is_a: GO:0140657 ! ATP-dependent activity -intersection_of: GO:0008233 ! peptidase activity -intersection_of: has_part GO:0016887 ! ATP hydrolysis activity -relationship: has_part GO:0016887 ! ATP hydrolysis activity - [Term] id: GO:0004518 name: nuclease activity @@ -37806,8 +39192,6 @@ alt_id: GO:0004696 alt_id: GO:0004700 alt_id: GO:0106311 def: "Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate." [GOC:bf, PMID:2956925] -synonym: "protein kinase (phosphorylating) activity" NARROW [EC:2.7.11.1] -synonym: "protein phosphokinase activity" NARROW [EC:2.7.11.1] synonym: "protein serine kinase activity" NARROW [EC:2.7.11.1] synonym: "protein serine-threonine kinase activity" RELATED [EC:2.7.11.1] synonym: "protein threonine kinase activity" NARROW [] @@ -37818,7 +39202,7 @@ synonym: "serine(threonine) protein kinase activity" RELATED [EC:2.7.11.1] synonym: "serine-specific protein kinase activity" NARROW [EC:2.7.11.1] synonym: "serine/threonine protein kinase activity" RELATED [EC:2.7.11.1] synonym: "threonine-specific protein kinase activity" NARROW [EC:2.7.11.1] -xref: EC:2.7.11.1 {source="skos:narrowMatch"} +xref: EC:2.7.11.1 {source="skos:exactMatch"} xref: Reactome:R-HSA-109702 "PDPK1 phosphorylates AKT2" xref: Reactome:R-HSA-109822 "MAPK3,(MAPK1) phosphorylates GRB2-1:SOS1:p-Y427-SHC1" xref: Reactome:R-HSA-109823 "MAPK3,(MAPK1) phosphorylates GRB2-1:SOS1:p-Y-IRS1,p-Y-IRS2" @@ -38688,6 +40072,11 @@ xref: Reactome:R-HSA-983707 "SYK autophosphorylates at the activated BCR" xref: Reactome:R-HSA-983709 "LYN, FYN, BLK phosphorylate ITAMs of Ig-alpha (CD79A) and Ig-beta (CD79B)" xref: RHEA:10596 {source="skos:exactMatch"} is_a: GO:0004672 ! protein kinase activity +relationship: has_participant CHEBI:15378 ! hydron +relationship: has_participant CHEBI:30616 ! ATP(4-) +relationship: has_participant CHEBI:456216 ! ADP(3-) +relationship: has_participant CHEBI:46858 +relationship: has_participant CHEBI:82620 [Term] id: GO:0004714 @@ -39093,6 +40482,7 @@ is_a: GO:0015172 ! acidic amino acid transmembrane transporter activity is_a: GO:0046943 ! carboxylic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity intersection_of: has_primary_input CHEBI:29985 ! L-glutamate(1-) +relationship: has_participant CHEBI:29985 ! L-glutamate(1-) relationship: has_primary_input CHEBI:29985 ! L-glutamate(1-) relationship: part_of GO:0015813 ! L-glutamate transmembrane transport @@ -39128,8 +40518,36 @@ def: "Enables the directed movement of a neurotransmitter into, out of or within synonym: "neurotransmitter transporter activity" RELATED [] xref: Reactome:R-HSA-374896 "Uptake of Noradrenaline" xref: Reactome:R-HSA-374919 "Noradrenaline clearance from the synaptic cleft" +relationship: in_taxon NCBITaxon:6072 ! Eumetazoa +relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of GO:0006836 {http://purl.org/dc/terms/source="GO_REF:0000090"} ! neurotransmitter transport +[Term] +id: GO:0005337 +name: nucleoside transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other." [GOC:ai] +synonym: "intracellular nucleoside transmembrane transporter activity" NARROW [] +xref: Reactome:R-HSA-109527 "Equilibrative transport (import) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 2" +xref: Reactome:R-HSA-109529 "Equilibrative transport (export) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 2" +xref: Reactome:R-HSA-109534 "Equilibrative transport (export) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 1" +xref: Reactome:R-HSA-109536 "Equilibrative transport (import) of nucleosides and free bases by solute carrier family 29 (nucleoside transporters), member 1" +xref: Reactome:R-HSA-5628807 "Defective SLC29A3 does not transport nucleosides from lysosomal lumen to cytosol" +xref: Reactome:R-HSA-727740 "Equilibrative transport (import) of adenosine and biogenic amines by solute carrier family 29 (nucleoside transporters), member 4" +xref: Reactome:R-HSA-727749 "SLC29A3 transports nucleosides from lysosomal lumen to cytosol" +xref: Reactome:R-HSA-727767 "SLC29A3 transports nucleosides from cytosol to lysosomal lumen" +xref: Reactome:R-HSA-727768 "Equilibrative transport (export) of adenosine and biogenic amines by solute carrier family 29 (nucleoside transporters), member 4" +xref: Reactome:R-HSA-9751024 "SLC29A1,2 transport 6MP from extracellular region to cytosol" +xref: Reactome:R-HSA-9754929 "SLC29A3 transports RBV,RBV-TP from cytosol to mitochondrial matrix" +xref: Reactome:R-HSA-9755015 "SLC29A1 transports RBV from extracellular region to cytosol" +xref: Reactome:R-HSA-9755035 "SLC29A1 transports RBV from cytosol to extracellular region" +is_a: GO:0015932 ! nucleobase-containing compound transmembrane transporter activity +is_a: GO:1901505 ! carbohydrate derivative transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:33838 ! nucleoside +relationship: has_primary_input CHEBI:33838 ! nucleoside +relationship: part_of GO:1901642 {http://purl.org/dc/terms/source="GO_REF:0000090"} ! nucleoside transmembrane transport + [Term] id: GO:0005342 name: organic acid transmembrane transporter activity @@ -39141,6 +40559,43 @@ intersection_of: has_primary_input CHEBI:64709 ! organic acid relationship: has_primary_input CHEBI:64709 ! organic acid relationship: part_of GO:1903825 ! organic acid transmembrane transport +[Term] +id: GO:0005345 +name: purine nucleobase transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from one side of a membrane to the other." [ISBN:0198506732] +synonym: "purine base transmembrane transporter activity" EXACT [GOC:go_curators] +synonym: "purine transmembrane transporter activity" RELATED [] +is_a: GO:0015205 ! nucleobase transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:26386 ! purine nucleobase +relationship: has_primary_input CHEBI:26386 ! purine nucleobase +relationship: part_of GO:1904823 ! purine nucleobase transmembrane transport + +[Term] +id: GO:0005346 +name: purine ribonucleotide transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, from one side of a membrane to the other." [GOC:ai] +is_a: GO:0015216 ! purine nucleotide transmembrane transporter activity +is_a: GO:1901505 ! carbohydrate derivative transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:26400 ! purine ribonucleotide +relationship: has_primary_input CHEBI:26400 ! purine ribonucleotide + +[Term] +id: GO:0005347 +name: ATP transmembrane transporter activity +namespace: molecular_function +alt_id: GO:0005348 +def: "Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other." [GOC:ai] +xref: Reactome:R-HSA-9717392 "CALHM1:CALHM3 transports ATP from the cytosol to the extracellular region" +is_a: GO:0008514 ! organic anion transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:30616 ! ATP(4-) +relationship: has_primary_input CHEBI:30616 ! ATP(4-) +relationship: part_of GO:0015867 ! ATP transport + [Term] id: GO:0005355 name: glucose transmembrane transporter activity @@ -39294,6 +40749,19 @@ intersection_of: GO:0005488 ! binding intersection_of: has_input GO:0005581 ! collagen trimer relationship: has_input GO:0005581 ! collagen trimer +[Term] +id: GO:0005524 +name: ATP binding +namespace: molecular_function +def: "Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator." [ISBN:0198506732] +synonym: "Mg-ATP binding" EXACT [] +synonym: "MgATP binding" EXACT [] +xref: Reactome:R-HSA-265682 "KCNJ11 tetramer:ABCC8 tetramer binds 4xATP, closing the channel" +is_a: GO:0043168 ! anion binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:30616 ! ATP(4-) +relationship: has_input CHEBI:30616 ! ATP(4-) + [Term] id: GO:0005536 name: glucose binding @@ -40170,6 +41638,17 @@ intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:17234 ! glucose relationship: has_primary_input CHEBI:17234 ! glucose +[Term] +id: GO:0006014 +name: D-ribose metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving D-ribose (ribo-pentose). As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12." [ISBN:0198506732] +synonym: "D-ribose metabolism" EXACT [] +is_a: GO:0019321 ! pentose metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:16988 ! D-ribose +relationship: has_primary_input_or_output CHEBI:16988 ! D-ribose + [Term] id: GO:0006022 name: aminoglycan metabolic process @@ -40477,6 +41956,169 @@ intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:61120 ! nucleobase-containing molecular entity relationship: has_primary_input_or_output CHEBI:61120 ! nucleobase-containing molecular entity +[Term] +id: GO:0006140 +name: regulation of nucleotide metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleotides." [GOC:go_curators] +synonym: "regulation of nucleotide metabolism" EXACT [] +is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process +is_a: GO:0019220 ! regulation of phosphate metabolic process +is_a: GO:0062012 ! regulation of small molecule metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0009117 ! nucleotide metabolic process +relationship: regulates GO:0009117 ! nucleotide metabolic process + +[Term] +id: GO:0006141 +name: regulation of purine nucleobase metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving purines." [GOC:go_curators] +synonym: "regulation of purine base metabolic process" EXACT [GOC:go_curators] +synonym: "regulation of purine base metabolism" EXACT [] +is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process +is_a: GO:0062012 ! regulation of small molecule metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0006144 ! purine nucleobase metabolic process +relationship: regulates GO:0006144 ! purine nucleobase metabolic process + +[Term] +id: GO:0006144 +name: purine nucleobase metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine." [GOC:go_curators] +synonym: "purine base metabolic process" EXACT [GOC:go_curators] +synonym: "purine base metabolism" EXACT [] +synonym: "purine metabolic process" NARROW [] +synonym: "purine metabolism" NARROW [] +is_a: GO:0009112 ! nucleobase metabolic process +is_a: GO:0072521 ! purine-containing compound metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26386 ! purine nucleobase +relationship: has_primary_input_or_output CHEBI:26386 ! purine nucleobase + +[Term] +id: GO:0006145 +name: purine nucleobase catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine." [GOC:go_curators] +synonym: "purine base breakdown" EXACT [] +synonym: "purine base catabolic process" EXACT [GOC:go_curators] +synonym: "purine base catabolism" EXACT [] +synonym: "purine base degradation" EXACT [] +is_a: GO:0006144 ! purine nucleobase metabolic process +is_a: GO:0046113 ! nucleobase catabolic process +is_a: GO:0072523 ! purine-containing compound catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26386 ! purine nucleobase +relationship: has_primary_input CHEBI:26386 ! purine nucleobase + +[Term] +id: GO:0006146 +name: adenine catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of adenine, 6-aminopurine, one of the 5 main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine." [ISBN:0198506732] +synonym: "adenine breakdown" EXACT [] +synonym: "adenine catabolism" EXACT [] +synonym: "adenine degradation" EXACT [] +is_a: GO:0006145 ! purine nucleobase catabolic process +is_a: GO:0046083 ! adenine metabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:16708 ! adenine +relationship: has_primary_input CHEBI:16708 ! adenine + +[Term] +id: GO:0006152 +name: purine nucleoside catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside)." [GOC:go_curators] +synonym: "purine nucleoside breakdown" EXACT [] +synonym: "purine nucleoside catabolism" EXACT [] +synonym: "purine nucleoside degradation" EXACT [] +is_a: GO:0009164 ! nucleoside catabolic process +is_a: GO:0042278 ! purine nucleoside metabolic process +is_a: GO:0072523 ! purine-containing compound catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26394 ! purine nucleoside +relationship: has_primary_input CHEBI:26394 ! purine nucleoside + +[Term] +id: GO:0006154 +name: adenosine catabolic process +namespace: biological_process +alt_id: GO:0006156 +def: "The chemical reactions and pathways resulting in the breakdown of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes." [GOC:go_curators] +synonym: "adenosine breakdown" EXACT [] +synonym: "adenosine catabolism" EXACT [] +synonym: "adenosine degradation" EXACT [] +synonym: "adenosine phosphorolysis" RELATED [] +is_a: GO:0046085 ! adenosine metabolic process +is_a: GO:0046130 ! purine ribonucleoside catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:16335 ! adenosine +relationship: has_primary_input CHEBI:16335 ! adenosine + +[Term] +id: GO:0006163 +name: purine nucleotide metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine metabolic process" NARROW [] +synonym: "purine metabolism" NARROW [] +synonym: "purine nucleotide metabolism" EXACT [] +is_a: GO:0009117 ! nucleotide metabolic process +is_a: GO:0072521 ! purine-containing compound metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26395 ! purine nucleotide +relationship: has_primary_input_or_output CHEBI:26395 ! purine nucleotide + +[Term] +id: GO:0006164 +name: purine nucleotide biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine nucleotide anabolism" EXACT [] +synonym: "purine nucleotide biosynthesis" EXACT [] +synonym: "purine nucleotide formation" EXACT [] +synonym: "purine nucleotide synthesis" EXACT [] +xref: MetaCyc:DENOVOPURINE2-PWY +is_a: GO:0006163 ! purine nucleotide metabolic process +is_a: GO:0009165 ! nucleotide biosynthetic process +is_a: GO:0072522 ! purine-containing compound biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26395 ! purine nucleotide +relationship: has_primary_output CHEBI:26395 ! purine nucleotide + +[Term] +id: GO:0006172 +name: ADP biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of ADP, adenosine 5'-diphosphate." [GOC:ai] +synonym: "ADP anabolism" EXACT [] +synonym: "ADP biosynthesis" EXACT [] +synonym: "ADP formation" EXACT [] +synonym: "ADP synthesis" EXACT [] +is_a: GO:0009133 ! nucleoside diphosphate biosynthetic process +is_a: GO:0046031 ! ADP metabolic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:456216 ! ADP(3-) +relationship: has_primary_output CHEBI:456216 ! ADP(3-) + +[Term] +id: GO:0006195 +name: purine nucleotide catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine nucleotide breakdown" EXACT [] +synonym: "purine nucleotide catabolism" EXACT [] +synonym: "purine nucleotide degradation" EXACT [] +is_a: GO:0006163 ! purine nucleotide metabolic process +is_a: GO:0009166 ! nucleotide catabolic process +is_a: GO:0072523 ! purine-containing compound catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26395 ! purine nucleotide +relationship: has_primary_input CHEBI:26395 ! purine nucleotide + [Term] id: GO:0006259 name: DNA metabolic process @@ -40735,8 +42377,8 @@ id: GO:0006468 name: protein phosphorylation namespace: biological_process def: "The process of introducing a phosphate group on to a protein." [GOC:hb] +subset: gocheck_do_not_annotate subset: goslim_yeast -subset: term_scheduled_for_obsoletion synonym: "protein amino acid phosphorylation" EXACT [GOC:bf] is_a: GO:0016310 ! phosphorylation is_a: GO:0036211 ! protein modification process @@ -40746,7 +42388,7 @@ id: GO:0006469 name: negative regulation of protein kinase activity namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity." [GOC:go_curators] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of protein kinase activity" EXACT [] synonym: "down-regulation of protein kinase activity" EXACT [] synonym: "downregulation of protein kinase activity" EXACT [] @@ -41453,6 +43095,37 @@ intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:33655 ! aromatic compound relationship: has_primary_input_or_output CHEBI:33655 ! aromatic compound +[Term] +id: GO:0006753 +name: nucleoside phosphate metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving any phosphorylated nucleoside." [GOC:mah] +synonym: "nucleoside phosphate metabolism" EXACT [] +is_a: GO:0006796 ! phosphate-containing compound metabolic process +is_a: GO:0019637 ! organophosphate metabolic process +is_a: GO:0055086 ! nucleobase-containing small molecule metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:25608 ! nucleoside phosphate +relationship: has_primary_input_or_output CHEBI:25608 ! nucleoside phosphate + +[Term] +id: GO:0006754 +name: ATP biosynthetic process +namespace: biological_process +alt_id: GO:0006758 +alt_id: GO:0006759 +def: "The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator." [GOC:go_curators, ISBN:0198506732] +synonym: "ATP anabolism" EXACT [] +synonym: "ATP biosynthesis" EXACT [] +synonym: "ATP formation" EXACT [] +synonym: "ATP regeneration" NARROW [] +synonym: "ATP synthesis" EXACT [] +is_a: GO:0009142 ! nucleoside triphosphate biosynthetic process +is_a: GO:0046034 ! ATP metabolic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:30616 ! ATP(4-) +relationship: has_primary_output CHEBI:30616 ! ATP(4-) + [Term] id: GO:0006778 name: porphyrin-containing compound metabolic process @@ -41758,6 +43431,32 @@ intersection_of: GO:0006865 ! amino acid transport intersection_of: occurs_in GO:0005576 ! extracellular region relationship: occurs_in GO:0005576 ! extracellular region +[Term] +id: GO:0006862 +name: nucleotide transport +namespace: biological_process +def: "The directed movement of a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate, into, out of or within a cell." [ISBN:0198506732] +is_a: GO:0015748 ! organophosphate ester transport +is_a: GO:0015931 ! nucleobase-containing compound transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:36976 ! nucleotide +relationship: has_primary_input CHEBI:36976 ! nucleotide + +[Term] +id: GO:0006863 +name: purine nucleobase transport +namespace: biological_process +alt_id: GO:0015852 +def: "The directed movement of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [ISBN:0198506732] +synonym: "purine base transmembrane transport" EXACT [GOC:mah] +synonym: "purine base transport" EXACT [GOC:go_curators] +synonym: "purine transmembrane transport" RELATED [GOC:mah] +synonym: "purine transport" RELATED [] +is_a: GO:0015851 ! nucleobase transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:26386 ! purine nucleobase +relationship: has_primary_input CHEBI:26386 ! purine nucleobase + [Term] id: GO:0006865 name: amino acid transport @@ -43048,6 +44747,7 @@ id: GO:0007281 name: germ cell development namespace: biological_process def: "The process whose specific outcome is the progression of an immature germ cell over time, from its formation to the mature structure (gamete). A germ cell is any reproductive cell in a multicellular organism." [GOC:go_curators] +synonym: "gametogenesis" NARROW [] synonym: "germ-cell development" EXACT [] synonym: "primordial germ cell development" NARROW [] is_a: GO:0003006 ! developmental process involved in reproduction @@ -44671,57 +46371,6 @@ intersection_of: GO:0004930 ! G protein-coupled receptor activity intersection_of: has_input CHEBI:32952 ! amine relationship: has_input CHEBI:32952 ! amine -[Term] -id: GO:0008233 -name: peptidase activity -namespace: molecular_function -alt_id: GO:0070010 -alt_id: GO:0070011 -def: "Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid." [GOC:jl, ISBN:0815332181] -subset: goslim_candida -subset: goslim_chembl -subset: goslim_drosophila -subset: goslim_metagenomics -subset: goslim_pir -subset: goslim_yeast -synonym: "hydrolase, acting on peptide bonds" EXACT [] -synonym: "peptidase activity, acting on D-amino acid peptides" NARROW [] -synonym: "peptidase activity, acting on L-amino acid peptides" NARROW [] -synonym: "peptide hydrolase activity" EXACT [] -synonym: "protease activity" EXACT [] -synonym: "proteinase activity" NARROW [] -xref: EC:3.4.-.- -xref: Reactome:R-HSA-205112 "gamma-secretase cleaves p75NTR, releasing NRIF and TRAF6" -xref: Reactome:R-HSA-3000243 "Unknown lysosomal protease degrades CBLIF:RCbl to release Cbl" -xref: Reactome:R-HSA-3000263 "TCN2:RCbl is degraded to release RCbl" -xref: Reactome:R-HSA-3065958 "An unknown protease degrades ACACA" -xref: Reactome:R-HSA-3065959 "An unknown protease degrades hCBXs" -xref: Reactome:R-HSA-3139027 "Maturation of HIV Virion" -xref: Reactome:R-HSA-376149 "Proteolytic processing of SLIT" -xref: Reactome:R-HSA-4167501 "An unknown protease degrades ACACB" -xref: Reactome:R-HSA-448678 "CTSG cleaves CASP1(1-404)" -xref: Reactome:R-HSA-5655483 "USP1 autocleavage" -xref: Reactome:R-HSA-5684864 "NAPSA, CTSH, PGA3-5 cleave pro-SFTPB" -xref: Reactome:R-HSA-5685902 "NAPSA, CTSH, PGA3-5 cleave pro-SFTPC" -xref: Reactome:R-HSA-6803060 "DCD(63-110) is processed to DCD(63-109)" -is_a: GO:0016787 ! hydrolase activity -is_a: GO:0140096 ! catalytic activity, acting on a protein - -[Term] -id: GO:0008234 -name: cysteine-type peptidase activity -namespace: molecular_function -alt_id: GO:0004220 -def: "Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile." [GOC:mah, https://www.ebi.ac.uk/merops/about/glossary.shtml#CATTYPE] -synonym: "cysteine protease activity" NARROW [] -synonym: "thiol protease activity" NARROW [] -xref: Reactome:R-HSA-2022381 "Cathepsin Z (Cathepsin X) hydrolyzes Angiotensin-(1-10) to Angiotensin-(1-8)" -xref: Reactome:R-HSA-2467775 "Autocleavage of ESPL1 (Separase)" -xref: Reactome:R-HSA-2467809 "ESPL1 (Separase) cleaves centromeric cohesin" -xref: Reactome:R-HSA-5660752 "USP9X deubiquitinates Ub-SNCA" -xref: Reactome:R-HSA-9757951 "CASP8 cleaves N4BP1 at D424, D490" -is_a: GO:0008233 ! peptidase activity - [Term] id: GO:0008272 name: sulfate transport @@ -45497,6 +47146,506 @@ intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:18282 ! nucleobase relationship: has_primary_input_or_output CHEBI:18282 ! nucleobase +[Term] +id: GO:0009113 +name: purine nucleobase biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine." [ISBN:0198506732] +synonym: "purine base anabolism" EXACT [] +synonym: "purine base biosynthesis" EXACT [] +synonym: "purine base biosynthetic process" EXACT [GOC:go_curators] +synonym: "purine base formation" EXACT [] +synonym: "purine base synthesis" EXACT [] +xref: MetaCyc:PWY-841 +is_a: GO:0006144 ! purine nucleobase metabolic process +is_a: GO:0046112 ! nucleobase biosynthetic process +is_a: GO:0072522 ! purine-containing compound biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26386 ! purine nucleobase +relationship: has_primary_output CHEBI:26386 ! purine nucleobase + +[Term] +id: GO:0009116 +name: nucleoside metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine)." [GOC:ma] +subset: goslim_pir +synonym: "nucleoside metabolism" EXACT [] +is_a: GO:0055086 ! nucleobase-containing small molecule metabolic process +is_a: GO:1901564 ! organonitrogen compound metabolic process +is_a: GO:1901657 ! glycosyl compound metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:33838 ! nucleoside +relationship: has_primary_input_or_output CHEBI:33838 ! nucleoside + +[Term] +id: GO:0009117 +name: nucleotide metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates)." [GOC:ma] +subset: goslim_pir +synonym: "nucleotide metabolism" EXACT [] +is_a: GO:0006753 ! nucleoside phosphate metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:36976 ! nucleotide +relationship: has_primary_input_or_output CHEBI:36976 ! nucleotide + +[Term] +id: GO:0009118 +name: regulation of nucleoside metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleosides." [GOC:go_curators] +synonym: "regulation of nucleoside metabolism" EXACT [] +is_a: GO:0019219 ! regulation of nucleobase-containing compound metabolic process +is_a: GO:0062012 ! regulation of small molecule metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0009116 ! nucleoside metabolic process +relationship: regulates GO:0009116 ! nucleoside metabolic process + +[Term] +id: GO:0009119 +name: ribonucleoside metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule." [GOC:jl] +synonym: "ribonucleoside metabolism" EXACT [] +is_a: GO:0009116 ! nucleoside metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:18254 ! ribonucleoside +relationship: has_primary_input_or_output CHEBI:18254 ! ribonucleoside + +[Term] +id: GO:0009132 +name: nucleoside diphosphate metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "nucleoside diphosphate metabolism" EXACT [] +is_a: GO:0006793 ! phosphorus metabolic process +is_a: GO:0071704 ! organic substance metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) +relationship: has_primary_input_or_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) + +[Term] +id: GO:0009133 +name: nucleoside diphosphate biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "nucleoside diphosphate anabolism" EXACT [] +synonym: "nucleoside diphosphate biosynthesis" EXACT [] +synonym: "nucleoside diphosphate formation" EXACT [] +synonym: "nucleoside diphosphate synthesis" EXACT [] +is_a: GO:0009132 ! nucleoside diphosphate metabolic process +is_a: GO:1901576 ! organic substance biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) +relationship: has_primary_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) + +[Term] +id: GO:0009134 +name: nucleoside diphosphate catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "nucleoside diphosphate breakdown" EXACT [] +synonym: "nucleoside diphosphate catabolism" EXACT [] +synonym: "nucleoside diphosphate degradation" EXACT [] +is_a: GO:0009132 ! nucleoside diphosphate metabolic process +is_a: GO:1901575 ! organic substance catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:57930 ! nucleoside 5'-diphosphate(3-) +relationship: has_primary_input CHEBI:57930 ! nucleoside 5'-diphosphate(3-) + +[Term] +id: GO:0009135 +name: purine nucleoside diphosphate metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine nucleoside diphosphate metabolism" EXACT [] +is_a: GO:0006753 ! nucleoside phosphate metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26391 ! purine nucleoside diphosphate +relationship: has_primary_input_or_output CHEBI:26391 ! purine nucleoside diphosphate + +[Term] +id: GO:0009136 +name: purine nucleoside diphosphate biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine nucleoside diphosphate anabolism" EXACT [] +synonym: "purine nucleoside diphosphate biosynthesis" EXACT [] +synonym: "purine nucleoside diphosphate formation" EXACT [] +synonym: "purine nucleoside diphosphate synthesis" EXACT [] +is_a: GO:0009135 ! purine nucleoside diphosphate metabolic process +is_a: GO:1901293 ! nucleoside phosphate biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26391 ! purine nucleoside diphosphate +relationship: has_primary_output CHEBI:26391 ! purine nucleoside diphosphate + +[Term] +id: GO:0009137 +name: purine nucleoside diphosphate catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of purine nucleoside diphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine nucleoside diphosphate breakdown" EXACT [] +synonym: "purine nucleoside diphosphate catabolism" EXACT [] +synonym: "purine nucleoside diphosphate degradation" EXACT [] +is_a: GO:0009135 ! purine nucleoside diphosphate metabolic process +is_a: GO:1901292 ! nucleoside phosphate catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26391 ! purine nucleoside diphosphate +relationship: has_primary_input CHEBI:26391 ! purine nucleoside diphosphate + +[Term] +id: GO:0009141 +name: nucleoside triphosphate metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "nucleoside triphosphate metabolism" EXACT [] +is_a: GO:0006793 ! phosphorus metabolic process +is_a: GO:0071704 ! organic substance metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) +relationship: has_primary_input_or_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) + +[Term] +id: GO:0009142 +name: nucleoside triphosphate biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "nucleoside triphosphate anabolism" EXACT [] +synonym: "nucleoside triphosphate biosynthesis" EXACT [] +synonym: "nucleoside triphosphate formation" EXACT [] +synonym: "nucleoside triphosphate synthesis" EXACT [] +is_a: GO:0009141 ! nucleoside triphosphate metabolic process +is_a: GO:1901576 ! organic substance biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) +relationship: has_primary_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) + +[Term] +id: GO:0009143 +name: nucleoside triphosphate catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "nucleoside triphosphate breakdown" EXACT [] +synonym: "nucleoside triphosphate catabolism" EXACT [] +synonym: "nucleoside triphosphate degradation" EXACT [] +is_a: GO:0009141 ! nucleoside triphosphate metabolic process +is_a: GO:1901575 ! organic substance catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:61557 ! nucleoside 5'-triphoshate(4-) +relationship: has_primary_input CHEBI:61557 ! nucleoside 5'-triphoshate(4-) + +[Term] +id: GO:0009144 +name: purine nucleoside triphosphate metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine nucleoside triphosphate metabolism" EXACT [] +is_a: GO:0006753 ! nucleoside phosphate metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26393 ! purine nucleoside triphosphate +relationship: has_primary_input_or_output CHEBI:26393 ! purine nucleoside triphosphate + +[Term] +id: GO:0009145 +name: purine nucleoside triphosphate biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine nucleoside triphosphate anabolism" EXACT [] +synonym: "purine nucleoside triphosphate biosynthesis" EXACT [] +synonym: "purine nucleoside triphosphate formation" EXACT [] +synonym: "purine nucleoside triphosphate synthesis" EXACT [] +is_a: GO:0009144 ! purine nucleoside triphosphate metabolic process +is_a: GO:1901293 ! nucleoside phosphate biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26393 ! purine nucleoside triphosphate +relationship: has_primary_output CHEBI:26393 ! purine nucleoside triphosphate + +[Term] +id: GO:0009146 +name: purine nucleoside triphosphate catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine nucleoside triphosphate breakdown" EXACT [] +synonym: "purine nucleoside triphosphate catabolism" EXACT [] +synonym: "purine nucleoside triphosphate degradation" EXACT [] +is_a: GO:0009144 ! purine nucleoside triphosphate metabolic process +is_a: GO:1901292 ! nucleoside phosphate catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26393 ! purine nucleoside triphosphate +relationship: has_primary_input CHEBI:26393 ! purine nucleoside triphosphate + +[Term] +id: GO:0009150 +name: purine ribonucleotide metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine ribonucleotide metabolism" EXACT [] +is_a: GO:0006163 ! purine nucleotide metabolic process +is_a: GO:0009259 ! ribonucleotide metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26400 ! purine ribonucleotide +relationship: has_primary_input_or_output CHEBI:26400 ! purine ribonucleotide + +[Term] +id: GO:0009152 +name: purine ribonucleotide biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine ribonucleotide anabolism" EXACT [] +synonym: "purine ribonucleotide biosynthesis" EXACT [] +synonym: "purine ribonucleotide formation" EXACT [] +synonym: "purine ribonucleotide synthesis" EXACT [] +is_a: GO:0006164 ! purine nucleotide biosynthetic process +is_a: GO:0009150 ! purine ribonucleotide metabolic process +is_a: GO:0009260 ! ribonucleotide biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26400 ! purine ribonucleotide +relationship: has_primary_output CHEBI:26400 ! purine ribonucleotide + +[Term] +id: GO:0009154 +name: purine ribonucleotide catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine ribonucleotide breakdown" EXACT [] +synonym: "purine ribonucleotide catabolism" EXACT [] +synonym: "purine ribonucleotide degradation" EXACT [] +is_a: GO:0006195 ! purine nucleotide catabolic process +is_a: GO:0009150 ! purine ribonucleotide metabolic process +is_a: GO:0009261 ! ribonucleotide catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26400 ! purine ribonucleotide +relationship: has_primary_input CHEBI:26400 ! purine ribonucleotide + +[Term] +id: GO:0009163 +name: nucleoside biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside)." [GOC:jl, ISBN:0140512713] +synonym: "nucleoside anabolism" EXACT [] +synonym: "nucleoside biosynthesis" EXACT [] +synonym: "nucleoside formation" EXACT [] +synonym: "nucleoside synthesis" EXACT [] +is_a: GO:0009116 ! nucleoside metabolic process +is_a: GO:0034404 ! nucleobase-containing small molecule biosynthetic process +is_a: GO:1901566 ! organonitrogen compound biosynthetic process +is_a: GO:1901659 ! glycosyl compound biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:33838 ! nucleoside +relationship: has_primary_output CHEBI:33838 ! nucleoside + +[Term] +id: GO:0009164 +name: nucleoside catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside)." [GOC:jl] +synonym: "nucleoside breakdown" EXACT [] +synonym: "nucleoside catabolism" EXACT [] +synonym: "nucleoside degradation" EXACT [] +is_a: GO:0009116 ! nucleoside metabolic process +is_a: GO:0034656 ! nucleobase-containing small molecule catabolic process +is_a: GO:1901565 ! organonitrogen compound catabolic process +is_a: GO:1901658 ! glycosyl compound catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:33838 ! nucleoside +relationship: has_primary_input CHEBI:33838 ! nucleoside + +[Term] +id: GO:0009165 +name: nucleotide biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates)." [GOC:go_curators] +synonym: "nucleotide anabolism" EXACT [] +synonym: "nucleotide biosynthesis" EXACT [] +synonym: "nucleotide formation" EXACT [] +synonym: "nucleotide synthesis" EXACT [] +is_a: GO:0009117 ! nucleotide metabolic process +is_a: GO:1901293 ! nucleoside phosphate biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:36976 ! nucleotide +relationship: has_primary_output CHEBI:36976 ! nucleotide + +[Term] +id: GO:0009166 +name: nucleotide catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates)." [GOC:go_curators] +synonym: "nucleotide breakdown" EXACT [] +synonym: "nucleotide catabolism" EXACT [] +synonym: "nucleotide degradation" EXACT [] +is_a: GO:0009117 ! nucleotide metabolic process +is_a: GO:1901292 ! nucleoside phosphate catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:36976 ! nucleotide +relationship: has_primary_input CHEBI:36976 ! nucleotide + +[Term] +id: GO:0009179 +name: purine ribonucleoside diphosphate metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine ribonucleoside diphosphate metabolism" EXACT [] +is_a: GO:0009135 ! purine nucleoside diphosphate metabolic process +is_a: GO:0009185 ! ribonucleoside diphosphate metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26396 ! purine ribonucleoside diphosphate +relationship: has_primary_input_or_output CHEBI:26396 ! purine ribonucleoside diphosphate + +[Term] +id: GO:0009180 +name: purine ribonucleoside diphosphate biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine ribonucleoside diphosphate anabolism" EXACT [] +synonym: "purine ribonucleoside diphosphate biosynthesis" EXACT [] +synonym: "purine ribonucleoside diphosphate formation" EXACT [] +synonym: "purine ribonucleoside diphosphate synthesis" EXACT [] +is_a: GO:0009136 ! purine nucleoside diphosphate biosynthetic process +is_a: GO:0009179 ! purine ribonucleoside diphosphate metabolic process +is_a: GO:0009188 ! ribonucleoside diphosphate biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26396 ! purine ribonucleoside diphosphate +relationship: has_primary_output CHEBI:26396 ! purine ribonucleoside diphosphate + +[Term] +id: GO:0009181 +name: purine ribonucleoside diphosphate catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine ribonucleoside diphosphate breakdown" EXACT [] +synonym: "purine ribonucleoside diphosphate catabolism" EXACT [] +synonym: "purine ribonucleoside diphosphate degradation" EXACT [] +is_a: GO:0009137 ! purine nucleoside diphosphate catabolic process +is_a: GO:0009179 ! purine ribonucleoside diphosphate metabolic process +is_a: GO:0009191 ! ribonucleoside diphosphate catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26396 ! purine ribonucleoside diphosphate +relationship: has_primary_input CHEBI:26396 ! purine ribonucleoside diphosphate + +[Term] +id: GO:0009185 +name: ribonucleoside diphosphate metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "ribonucleoside diphosphate metabolism" EXACT [] +is_a: GO:0006753 ! nucleoside phosphate metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:17668 ! ribonucleoside diphosphate +relationship: has_primary_input_or_output CHEBI:17668 ! ribonucleoside diphosphate + +[Term] +id: GO:0009188 +name: ribonucleoside diphosphate biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "ribonucleoside diphosphate anabolism" EXACT [] +synonym: "ribonucleoside diphosphate biosynthesis" EXACT [] +synonym: "ribonucleoside diphosphate formation" EXACT [] +synonym: "ribonucleoside diphosphate synthesis" EXACT [] +is_a: GO:0009185 ! ribonucleoside diphosphate metabolic process +is_a: GO:1901293 ! nucleoside phosphate biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:17668 ! ribonucleoside diphosphate +relationship: has_primary_output CHEBI:17668 ! ribonucleoside diphosphate + +[Term] +id: GO:0009191 +name: ribonucleoside diphosphate catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "ribonucleoside diphosphate breakdown" EXACT [] +synonym: "ribonucleoside diphosphate catabolism" EXACT [] +synonym: "ribonucleoside diphosphate degradation" EXACT [] +is_a: GO:0009185 ! ribonucleoside diphosphate metabolic process +is_a: GO:1901292 ! nucleoside phosphate catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:17668 ! ribonucleoside diphosphate +relationship: has_primary_input CHEBI:17668 ! ribonucleoside diphosphate + +[Term] +id: GO:0009199 +name: ribonucleoside triphosphate metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "ribonucleoside triphosphate metabolism" EXACT [] +is_a: GO:0006753 ! nucleoside phosphate metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:17972 ! ribonucleoside triphosphate +relationship: has_primary_input_or_output CHEBI:17972 ! ribonucleoside triphosphate + +[Term] +id: GO:0009201 +name: ribonucleoside triphosphate biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "ribonucleoside triphosphate anabolism" EXACT [] +synonym: "ribonucleoside triphosphate biosynthesis" EXACT [] +synonym: "ribonucleoside triphosphate formation" EXACT [] +synonym: "ribonucleoside triphosphate synthesis" EXACT [] +is_a: GO:0009199 ! ribonucleoside triphosphate metabolic process +is_a: GO:1901293 ! nucleoside phosphate biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:17972 ! ribonucleoside triphosphate +relationship: has_primary_output CHEBI:17972 ! ribonucleoside triphosphate + +[Term] +id: GO:0009203 +name: ribonucleoside triphosphate catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "ribonucleoside triphosphate breakdown" EXACT [] +synonym: "ribonucleoside triphosphate catabolism" EXACT [] +synonym: "ribonucleoside triphosphate degradation" EXACT [] +is_a: GO:0009199 ! ribonucleoside triphosphate metabolic process +is_a: GO:1901292 ! nucleoside phosphate catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:17972 ! ribonucleoside triphosphate +relationship: has_primary_input CHEBI:17972 ! ribonucleoside triphosphate + +[Term] +id: GO:0009205 +name: purine ribonucleoside triphosphate metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine ribonucleoside triphosphate metabolism" EXACT [] +is_a: GO:0009144 ! purine nucleoside triphosphate metabolic process +is_a: GO:0009199 ! ribonucleoside triphosphate metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26398 ! purine ribonucleoside triphosphate +relationship: has_primary_input_or_output CHEBI:26398 ! purine ribonucleoside triphosphate + +[Term] +id: GO:0009206 +name: purine ribonucleoside triphosphate biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine ribonucleoside triphosphate anabolism" EXACT [] +synonym: "purine ribonucleoside triphosphate biosynthesis" EXACT [] +synonym: "purine ribonucleoside triphosphate formation" EXACT [] +synonym: "purine ribonucleoside triphosphate synthesis" EXACT [] +is_a: GO:0009145 ! purine nucleoside triphosphate biosynthetic process +is_a: GO:0009201 ! ribonucleoside triphosphate biosynthetic process +is_a: GO:0009205 ! purine ribonucleoside triphosphate metabolic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26398 ! purine ribonucleoside triphosphate +relationship: has_primary_output CHEBI:26398 ! purine ribonucleoside triphosphate + +[Term] +id: GO:0009207 +name: purine ribonucleoside triphosphate catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "purine ribonucleoside triphosphate breakdown" EXACT [] +synonym: "purine ribonucleoside triphosphate catabolism" EXACT [] +synonym: "purine ribonucleoside triphosphate degradation" EXACT [] +is_a: GO:0009146 ! purine nucleoside triphosphate catabolic process +is_a: GO:0009203 ! ribonucleoside triphosphate catabolic process +is_a: GO:0009205 ! purine ribonucleoside triphosphate metabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26398 ! purine ribonucleoside triphosphate +relationship: has_primary_input CHEBI:26398 ! purine ribonucleoside triphosphate + [Term] id: GO:0009247 name: glycolipid biosynthetic process @@ -45543,6 +47692,50 @@ intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:37163 ! glucan relationship: has_primary_input CHEBI:37163 ! glucan +[Term] +id: GO:0009259 +name: ribonucleotide metabolic process +namespace: biological_process +alt_id: GO:0009121 +def: "The chemical reactions and pathways involving a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "ribonucleotide metabolism" EXACT [] +is_a: GO:0009117 ! nucleotide metabolic process +is_a: GO:0019693 ! ribose phosphate metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26561 ! ribonucleotide +relationship: has_primary_input_or_output CHEBI:26561 ! ribonucleotide + +[Term] +id: GO:0009260 +name: ribonucleotide biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "ribonucleotide anabolism" EXACT [] +synonym: "ribonucleotide biosynthesis" EXACT [] +synonym: "ribonucleotide formation" EXACT [] +synonym: "ribonucleotide synthesis" EXACT [] +is_a: GO:0009165 ! nucleotide biosynthetic process +is_a: GO:0009259 ! ribonucleotide metabolic process +is_a: GO:0046390 ! ribose phosphate biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26561 ! ribonucleotide +relationship: has_primary_output CHEBI:26561 ! ribonucleotide + +[Term] +id: GO:0009261 +name: ribonucleotide catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar." [GOC:go_curators, ISBN:0198506732] +synonym: "ribonucleotide breakdown" EXACT [] +synonym: "ribonucleotide catabolism" EXACT [] +synonym: "ribonucleotide degradation" EXACT [] +is_a: GO:0009166 ! nucleotide catabolic process +is_a: GO:0009259 ! ribonucleotide metabolic process +is_a: GO:1901136 ! carbohydrate derivative catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26561 ! ribonucleotide +relationship: has_primary_input CHEBI:26561 ! ribonucleotide + [Term] id: GO:0009266 name: response to temperature stimulus @@ -46729,20 +48922,6 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0010463 ! mesenchymal cell proliferation relationship: regulates GO:0010463 ! mesenchymal cell proliferation -[Term] -id: GO:0010466 -name: negative regulation of peptidase activity -namespace: biological_process -def: "Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins." [GOC:dph, GOC:tb] -subset: term_scheduled_for_obsoletion -is_a: GO:0045861 ! negative regulation of proteolysis -is_a: GO:0051346 ! negative regulation of hydrolase activity -is_a: GO:0052547 ! regulation of peptidase activity -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0008233 ! peptidase activity -relationship: negatively_regulates GO:0006508 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! proteolysis -relationship: negatively_regulates GO:0008233 ! peptidase activity - [Term] id: GO:0010467 name: gene expression @@ -46772,7 +48951,7 @@ id: GO:0010469 name: regulation of signaling receptor activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity." [GOC:dph, GOC:tb] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "regulation of receptor activity" BROAD [] synonym: "regulation of signalling receptor activity" EXACT [] is_a: GO:0009966 ! regulation of signal transduction @@ -48122,22 +50301,6 @@ relationship: negatively_regulates GO:0022402 ! cell cycle process created_by: tb creation_date: 2009-04-27T09:53:22Z -[Term] -id: GO:0010952 -name: positive regulation of peptidase activity -namespace: biological_process -def: "Any process that increases the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins." [GOC:dph, GOC:tb] -subset: term_scheduled_for_obsoletion -is_a: GO:0045862 ! positive regulation of proteolysis -is_a: GO:0051345 ! positive regulation of hydrolase activity -is_a: GO:0052547 ! regulation of peptidase activity -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0008233 ! peptidase activity -relationship: positively_regulates GO:0006508 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! proteolysis -relationship: positively_regulates GO:0008233 ! peptidase activity -created_by: tb -creation_date: 2009-04-27T11:54:32Z - [Term] id: GO:0010954 name: positive regulation of protein processing @@ -48919,6 +51082,18 @@ intersection_of: GO:0050896 ! response to stimulus intersection_of: has_input CHEBI:33832 ! organic cyclic compound relationship: has_input CHEBI:33832 ! organic cyclic compound +[Term] +id: GO:0014074 +name: response to purine-containing compound +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine-containing compound stimulus." [GOC:ef] +synonym: "response to purine" RELATED [] +is_a: GO:0010243 ! response to organonitrogen compound +is_a: GO:0014070 ! response to organic cyclic compound +intersection_of: GO:0050896 ! response to stimulus +intersection_of: has_input CHEBI:26401 ! purines +relationship: has_input CHEBI:26401 ! purines + [Term] id: GO:0014075 name: response to amine @@ -49562,6 +51737,7 @@ xref: RHEA:34963 is_a: GO:0046873 ! metal ion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity intersection_of: has_primary_input CHEBI:29101 ! sodium(1+) +relationship: has_participant CHEBI:29101 ! sodium(1+) relationship: has_primary_input CHEBI:29101 ! sodium(1+) relationship: part_of GO:0035725 ! sodium ion transmembrane transport @@ -49575,6 +51751,7 @@ xref: RHEA:29671 is_a: GO:0046873 ! metal ion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity intersection_of: has_primary_input CHEBI:29108 ! calcium(2+) +relationship: has_participant CHEBI:29108 ! calcium(2+) relationship: has_primary_input CHEBI:29108 ! calcium(2+) relationship: part_of GO:0070588 ! calcium ion transmembrane transport @@ -49620,6 +51797,7 @@ xref: RHEA:28695 is_a: GO:0008514 ! organic anion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity intersection_of: has_primary_input CHEBI:17544 ! hydrogencarbonate +relationship: has_participant CHEBI:17544 ! hydrogencarbonate relationship: has_primary_input CHEBI:17544 ! hydrogencarbonate relationship: part_of GO:0015701 ! bicarbonate transport @@ -49634,6 +51812,7 @@ xref: RHEA:32823 is_a: GO:0015103 ! inorganic anion transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity intersection_of: has_primary_input CHEBI:35780 ! phosphate ion +relationship: has_participant CHEBI:43474 ! hydrogenphosphate relationship: has_primary_input CHEBI:35780 ! phosphate ion relationship: part_of GO:0035435 {http://purl.org/dc/terms/source="GO_REF:0000090"} ! phosphate ion transmembrane transport created_by: pr @@ -49654,6 +51833,7 @@ is_a: GO:0015103 ! inorganic anion transmembrane transporter activity is_a: GO:1901682 ! sulfur compound transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity intersection_of: has_primary_input CHEBI:16189 ! sulfate +relationship: has_participant CHEBI:16189 ! sulfate relationship: has_primary_input CHEBI:16189 ! sulfate relationship: part_of GO:1902358 {http://purl.org/dc/terms/source="GO_REF:0000090"} ! sulfate transmembrane transport @@ -49726,6 +51906,17 @@ intersection_of: has_primary_input CHEBI:35381 ! monosaccharide relationship: has_primary_input CHEBI:35381 ! monosaccharide relationship: part_of GO:0015749 ! monosaccharide transmembrane transport +[Term] +id: GO:0015146 +name: pentose transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of a pentose sugar from one side of a membrane to the other. Pentose is a monosaccharide with 5 carbon atoms." [GOC:ai, GOC:mtg_transport, ISBN:0815340729] +is_a: GO:0015145 ! monosaccharide transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:25901 ! pentose +relationship: has_primary_input CHEBI:25901 ! pentose +relationship: part_of GO:0015750 ! pentose transmembrane transport + [Term] id: GO:0015149 name: hexose transmembrane transporter activity @@ -49865,6 +52056,67 @@ intersection_of: has_primary_input CHEBI:18282 ! nucleobase relationship: has_primary_input CHEBI:18282 ! nucleobase relationship: part_of GO:0015851 ! nucleobase transport +[Term] +id: GO:0015207 +name: adenine transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of adenine, 6-aminopurine, from one side of a membrane to the other." [GOC:go_curators] +xref: Reactome:R-HSA-163215 "SLC25A5,6 dimers exchange ATP for ADP across the mitochondrial inner membrane" +xref: Reactome:R-HSA-5672027 "ARL2:GTP:ARL2BP:SLC25A4 dimer exchanges ATP for ADP across the mitochondrial inner membrane" +xref: RHEA:34999 +is_a: GO:0005345 ! purine nucleobase transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:16708 ! adenine +relationship: has_participant CHEBI:30616 ! ATP(4-) +relationship: has_participant CHEBI:456216 ! ADP(3-) +relationship: has_primary_input CHEBI:16708 ! adenine +relationship: part_of GO:0015853 ! adenine transport + +[Term] +id: GO:0015211 +name: purine nucleoside transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of a purine nucleoside, a purine base covalently bonded to a ribose or deoxyribose sugar, from one side of a membrane to the other." [GOC:ai] +is_a: GO:0005337 ! nucleoside transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:26394 ! purine nucleoside +relationship: has_primary_input CHEBI:26394 ! purine nucleoside +relationship: part_of GO:0015860 {http://purl.org/dc/terms/source="GO_REF:0000090"} ! purine nucleoside transmembrane transport + +[Term] +id: GO:0015215 +name: nucleotide transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate, from one side of a membrane to the other." [ISBN:0198506732] +is_a: GO:0015605 ! organophosphate ester transmembrane transporter activity +is_a: GO:0015932 ! nucleobase-containing compound transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:36976 ! nucleotide +relationship: has_primary_input CHEBI:36976 ! nucleotide +relationship: part_of GO:1901679 {http://purl.org/dc/terms/source="GO_REF:0000090"} ! nucleotide transmembrane transport + +[Term] +id: GO:0015216 +name: purine nucleotide transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of a purine nucleotide, any compound consisting of a purine nucleoside esterified with (ortho)phosphate, from one side of a membrane to the other." [GOC:ai] +is_a: GO:0015215 ! nucleotide transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:26395 ! purine nucleotide +relationship: has_primary_input CHEBI:26395 ! purine nucleotide +relationship: part_of GO:0015865 ! purine nucleotide transport + +[Term] +id: GO:0015217 +name: ADP transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of ADP, adenosine diphosphate, from one side of a membrane to the other." [GOC:ai] +is_a: GO:0008514 ! organic anion transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:456216 ! ADP(3-) +relationship: has_primary_input CHEBI:456216 ! ADP(3-) +relationship: part_of GO:0015866 ! ADP transport + [Term] id: GO:0015220 name: choline transmembrane transporter activity @@ -49943,6 +52195,7 @@ xref: RHEA:29679 is_a: GO:0046943 ! carboxylic acid transmembrane transporter activity intersection_of: GO:0022857 ! transmembrane transporter activity intersection_of: has_primary_input CHEBI:15740 ! formate +relationship: has_participant CHEBI:15740 ! formate relationship: has_primary_input CHEBI:15740 ! formate relationship: part_of GO:0015724 ! formate transport @@ -49957,6 +52210,17 @@ intersection_of: has_primary_input CHEBI:18310 ! alkane relationship: has_primary_input CHEBI:18310 ! alkane relationship: part_of GO:0015895 {http://purl.org/dc/terms/source="GO_REF:0000090"} ! alkane transport +[Term] +id: GO:0015591 +name: D-ribose transmembrane transporter activity +namespace: molecular_function +def: "Enables the transfer of D-ribose from one side of a membrane to the other. As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12." [GOC:mtg_transport, ISBN:0198506732, ISBN:0815340729] +is_a: GO:0015146 ! pentose transmembrane transporter activity +intersection_of: GO:0022857 ! transmembrane transporter activity +intersection_of: has_primary_input CHEBI:16988 ! D-ribose +relationship: has_primary_input CHEBI:16988 ! D-ribose +relationship: part_of GO:0015752 ! D-ribose transmembrane transport + [Term] id: GO:0015605 name: organophosphate ester transmembrane transporter activity @@ -50183,6 +52447,32 @@ relationship: results_in_transport_across GO:0016020 ! membrane created_by: vw creation_date: 2017-02-19T10:41:27Z +[Term] +id: GO:0015750 +name: pentose transmembrane transport +namespace: biological_process +def: "The process in which pentose is transported across a lipid bilayer, from one side of a membrane to the other. A pentose is any aldose with a chain of five carbon atoms in the molecule." [GOC:ai] +synonym: "pentose transport" RELATED [] +is_a: GO:0015749 ! monosaccharide transmembrane transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:25901 ! pentose +intersection_of: results_in_transport_across GO:0016020 ! membrane +relationship: has_primary_input CHEBI:25901 ! pentose +relationship: results_in_transport_across GO:0016020 ! membrane + +[Term] +id: GO:0015752 +name: D-ribose transmembrane transport +namespace: biological_process +def: "The process in which D-ribose is transported across a lipid bilayer, from one side of a membrane to the other. As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12." [GOC:ai] +synonym: "D-ribose transport" RELATED [] +is_a: GO:0015750 ! pentose transmembrane transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:16988 ! D-ribose +intersection_of: results_in_transport_across GO:0016020 ! membrane +relationship: has_primary_input CHEBI:16988 ! D-ribose +relationship: results_in_transport_across GO:0016020 ! membrane + [Term] id: GO:0015774 name: polysaccharide transport @@ -50313,6 +52603,97 @@ intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:18282 ! nucleobase relationship: has_primary_input CHEBI:18282 ! nucleobase +[Term] +id: GO:0015853 +name: adenine transport +namespace: biological_process +def: "The directed movement of adenine, 6-aminopurine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:go_curators, ISBN:0198506732] +synonym: "adenine transmembrane transport" EXACT [GOC:mah] +is_a: GO:0006863 ! purine nucleobase transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:16708 ! adenine +relationship: has_primary_input CHEBI:16708 ! adenine + +[Term] +id: GO:0015858 +name: nucleoside transport +namespace: biological_process +def: "The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] +is_a: GO:0015931 ! nucleobase-containing compound transport +is_a: GO:1901264 ! carbohydrate derivative transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:33838 ! nucleoside +relationship: has_primary_input CHEBI:33838 ! nucleoside + +[Term] +id: GO:0015859 +name: intracellular nucleoside transport +namespace: biological_process +def: "The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), within a cell." [GOC:ai] +is_a: GO:0015858 ! nucleoside transport +is_a: GO:0046907 ! intracellular transport +intersection_of: GO:0015858 ! nucleoside transport +intersection_of: occurs_in GO:0005622 ! intracellular anatomical structure +relationship: occurs_in GO:0005622 ! intracellular anatomical structure + +[Term] +id: GO:0015860 +name: purine nucleoside transmembrane transport +namespace: biological_process +alt_id: GO:0035427 +def: "The process in which a purine nucleoside is transported across a membrane. A purine nucleoside is a purine base covalently bonded to a ribose or deoxyribose sugar." [GOC:ai, GOC:vw] +comment: Note that this term is not intended for use in annotating lateral movement within membranes. +synonym: "purine nucleoside membrane transport" EXACT [] +synonym: "purine nucleoside transport" BROAD [GOC:vw] +is_a: GO:0072530 ! purine-containing compound transmembrane transport +is_a: GO:1901642 ! nucleoside transmembrane transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:26394 ! purine nucleoside +intersection_of: results_in_transport_across GO:0016020 ! membrane +relationship: has_primary_input CHEBI:26394 ! purine nucleoside +relationship: results_in_transport_across GO:0016020 ! membrane + +[Term] +id: GO:0015865 +name: purine nucleotide transport +namespace: biological_process +def: "The directed movement of a purine nucleotide, any compound consisting of a purine nucleoside esterified with (ortho)phosphate, into, out of or within a cell." [GOC:ai] +is_a: GO:0006862 ! nucleotide transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:26395 ! purine nucleotide +relationship: has_primary_input CHEBI:26395 ! purine nucleotide + +[Term] +id: GO:0015866 +name: ADP transport +namespace: biological_process +def: "The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] +is_a: GO:0015711 ! organic anion transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:456216 ! ADP(3-) +relationship: has_primary_input CHEBI:456216 ! ADP(3-) + +[Term] +id: GO:0015867 +name: ATP transport +namespace: biological_process +def: "The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] +is_a: GO:0015711 ! organic anion transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:30616 ! ATP(4-) +relationship: has_primary_input CHEBI:30616 ! ATP(4-) + +[Term] +id: GO:0015868 +name: purine ribonucleotide transport +namespace: biological_process +def: "The directed movement of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, into, out of or within a cell." [GOC:ai] +is_a: GO:0015865 ! purine nucleotide transport +is_a: GO:1901264 ! carbohydrate derivative transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:26400 ! purine ribonucleotide +relationship: has_primary_input CHEBI:26400 ! purine ribonucleotide + [Term] id: GO:0015869 name: protein-DNA complex transport @@ -50979,6 +53360,7 @@ synonym: "vesicle trafficking" RELATED [] synonym: "vesicle transport" EXACT [] synonym: "vesicular transport" EXACT [GOC:mah] is_a: GO:0006810 ! transport +is_a: GO:0009987 ! cellular process intersection_of: GO:0006810 ! transport intersection_of: process_has_causal_agent GO:0031982 ! vesicle relationship: process_has_causal_agent GO:0031982 ! vesicle @@ -51183,6 +53565,7 @@ namespace: biological_process def: "The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues." [GOC:cjm, GOC:dph, GOC:ems, GOC:pf, Wikipedia:Cell_migration] xref: Wikipedia:Cell_migration is_a: GO:0048870 ! cell motility +relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota [Term] id: GO:0016485 @@ -51217,6 +53600,17 @@ namespace: molecular_function def: "Combining with a protein hormone to initiate a change in cell activity." [GOC:mah] is_a: GO:0038023 ! signaling receptor activity +[Term] +id: GO:0016502 +name: nucleotide receptor activity +namespace: molecular_function +def: "Combining with a nucleotide and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. A nucleotide is a compound that consists of a nucleoside esterified with a phosphate molecule." [GOC:signaling, ISBN:0198506732] +is_a: GO:0004888 ! transmembrane signaling receptor activity +intersection_of: GO:0038023 ! signaling receptor activity +intersection_of: has_input CHEBI:36976 ! nucleotide +relationship: has_input CHEBI:36976 ! nucleotide +relationship: has_part GO:0000166 ! nucleotide binding + [Term] id: GO:0016525 name: negative regulation of angiogenesis @@ -51314,7 +53708,6 @@ def: "Catalysis of the transfer of an amino-acyl group from one compound (donor) synonym: "transferase activity, transferring amino-acyl groups" EXACT [] xref: EC:2.3.2.- is_a: GO:0016746 ! acyltransferase activity -is_a: GO:0140096 ! catalytic activity, acting on a protein [Term] id: GO:0016772 @@ -51459,6 +53852,11 @@ xref: Reactome:R-HSA-9706399 "RHOBTB3 hydrolyzes ATP" xref: Reactome:R-HSA-9749350 "ATP-dependent release of CDT1 from the OCCM complex" xref: RHEA:13065 is_a: GO:0017111 ! ribonucleoside triphosphate phosphatase activity +relationship: has_participant CHEBI:15377 ! water +relationship: has_participant CHEBI:15378 ! hydron +relationship: has_participant CHEBI:30616 ! ATP(4-) +relationship: has_participant CHEBI:43474 ! hydrogenphosphate +relationship: has_participant CHEBI:456216 ! ADP(3-) relationship: part_of GO:0140657 ! ATP-dependent activity [Term] @@ -51509,6 +53907,16 @@ intersection_of: GO:0005488 ! binding intersection_of: has_input CHEBI:25905 ! peptide hormone relationship: has_input CHEBI:25905 ! peptide hormone +[Term] +id: GO:0017076 +name: purine nucleotide binding +namespace: molecular_function +def: "Binding to a purine nucleotide, a compound consisting of a purine nucleoside esterified with (ortho)phosphate." [GOC:ai] +is_a: GO:0000166 ! nucleotide binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:26395 ! purine nucleotide +relationship: has_input CHEBI:26395 ! purine nucleotide + [Term] id: GO:0017085 name: response to insecticide @@ -51544,6 +53952,11 @@ xref: Reactome:R-HSA-8851494 "NTPDase7 hydrolyzes nucleoside triphosphates" xref: Reactome:R-HSA-8851538 "NTPDase8 hydrolyzes nucleoside triphosphates" xref: RHEA:23680 is_a: GO:0016462 ! pyrophosphatase activity +relationship: has_participant CHEBI:15377 ! water +relationship: has_participant CHEBI:15378 ! hydron +relationship: has_participant CHEBI:43474 ! hydrogenphosphate +relationship: has_participant CHEBI:57930 ! nucleoside 5'-diphosphate(3-) +relationship: has_participant CHEBI:61557 ! nucleoside 5'-triphoshate(4-) [Term] id: GO:0017126 @@ -51614,7 +54027,7 @@ id: GO:0018108 name: peptidyl-tyrosine phosphorylation namespace: biological_process def: "The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine." [RESID:AA0039] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate xref: RESID:AA0039 is_a: GO:0006468 ! protein phosphorylation is_a: GO:0018212 ! peptidyl-tyrosine modification @@ -51658,8 +54071,8 @@ id: GO:0018193 name: peptidyl-amino acid modification namespace: biological_process def: "The alteration of an amino acid residue in a peptide." [GOC:mah] +subset: gocheck_do_not_annotate subset: goslim_yeast -subset: term_scheduled_for_obsoletion is_a: GO:0036211 ! protein modification process relationship: has_input CHEBI:33708 ! amino-acid residue @@ -51668,7 +54081,7 @@ id: GO:0018212 name: peptidyl-tyrosine modification namespace: biological_process def: "The modification of peptidyl-tyrosine." [GOC:go_curators] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0018193 ! peptidyl-amino acid modification [Term] @@ -51876,6 +54289,36 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "pheromone response" EXACT [] is_a: GO:0010033 ! response to organic substance +[Term] +id: GO:0019302 +name: D-ribose biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of D-ribose, (ribo-pentose)." [ISBN:0198506732] +synonym: "D-ribose anabolism" EXACT [] +synonym: "D-ribose biosynthesis" EXACT [] +synonym: "D-ribose formation" EXACT [] +synonym: "D-ribose synthesis" EXACT [] +is_a: GO:0006014 ! D-ribose metabolic process +is_a: GO:0019322 ! pentose biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:16988 ! D-ribose +relationship: has_primary_output CHEBI:16988 ! D-ribose + +[Term] +id: GO:0019303 +name: D-ribose catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of D-ribose (ribo-pentose)." [ISBN:0198506732] +synonym: "D-ribose breakdown" EXACT [] +synonym: "D-ribose catabolism" EXACT [] +synonym: "D-ribose degradation" EXACT [] +xref: MetaCyc:RIBOKIN-PWY +is_a: GO:0006014 ! D-ribose metabolic process +is_a: GO:0019323 ! pentose catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:16988 ! D-ribose +relationship: has_primary_input CHEBI:16988 ! D-ribose + [Term] id: GO:0019318 name: hexose metabolic process @@ -51916,6 +54359,46 @@ intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:18133 ! hexose relationship: has_primary_input CHEBI:18133 ! hexose +[Term] +id: GO:0019321 +name: pentose metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule." [ISBN:0198506732] +synonym: "pentose metabolism" EXACT [] +is_a: GO:0005996 ! monosaccharide metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:25901 ! pentose +relationship: has_primary_input_or_output CHEBI:25901 ! pentose + +[Term] +id: GO:0019322 +name: pentose biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule." [ISBN:0198506732] +synonym: "pentose anabolism" EXACT [] +synonym: "pentose biosynthesis" EXACT [] +synonym: "pentose formation" EXACT [] +synonym: "pentose synthesis" EXACT [] +is_a: GO:0019321 ! pentose metabolic process +is_a: GO:0046364 ! monosaccharide biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:25901 ! pentose +relationship: has_primary_output CHEBI:25901 ! pentose + +[Term] +id: GO:0019323 +name: pentose catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule." [ISBN:0198506732] +synonym: "pentose breakdown" EXACT [] +synonym: "pentose catabolism" EXACT [] +synonym: "pentose degradation" EXACT [] +is_a: GO:0019321 ! pentose metabolic process +is_a: GO:0046365 ! monosaccharide catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:25901 ! pentose +relationship: has_primary_input CHEBI:25901 ! pentose + [Term] id: GO:0019336 name: phenol-containing compound catabolic process @@ -52135,6 +54618,25 @@ intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:25710 ! organophosphorus compound relationship: has_primary_input_or_output CHEBI:25710 ! organophosphorus compound +[Term] +id: GO:0019653 +name: anaerobic purine nucleobase catabolic process +namespace: biological_process +def: "The anaerobic chemical reactions and pathways resulting in the breakdown of purine nucleobases, yielding energy in the form of ATP." [GOC:mah] +synonym: "anaerobic purine base catabolic process" EXACT [GOC:go_curators] +synonym: "anaerobic purine base catabolism" EXACT [] +synonym: "anaerobic purine catabolic process" RELATED [] +synonym: "purine base fermentation" EXACT [] +synonym: "purine fermentation" RELATED [] +xref: MetaCyc:P164-PWY +xref: MetaCyc:PWY-5044 +xref: MetaCyc:PWY-5497 +is_a: GO:0006145 ! purine nucleobase catabolic process +is_a: GO:0019666 ! nitrogenous compound fermentation +intersection_of: GO:0006113 ! fermentation +intersection_of: has_input CHEBI:35584 ! purine +relationship: has_input CHEBI:35584 ! purine + [Term] id: GO:0019654 name: acetate fermentation @@ -52160,6 +54662,19 @@ intersection_of: GO:0006113 ! fermentation intersection_of: has_primary_input CHEBI:51143 ! nitrogen molecular entity relationship: has_primary_input CHEBI:51143 ! nitrogen molecular entity +[Term] +id: GO:0019693 +name: ribose phosphate metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving ribose phosphate, any phosphorylated ribose sugar." [GOC:ai] +synonym: "ribose phosphate metabolism" EXACT [] +is_a: GO:0006796 ! phosphate-containing compound metabolic process +is_a: GO:0019637 ! organophosphate metabolic process +is_a: GO:1901135 ! carbohydrate derivative metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26562 ! ribose phosphate +relationship: has_primary_input_or_output CHEBI:26562 ! ribose phosphate + [Term] id: GO:0019695 name: choline metabolic process @@ -52267,7 +54782,7 @@ relationship: has_primary_input CHEBI:64708 ! one-carbon compound id: GO:0019777 name: Atg12 transferase activity namespace: molecular_function -def: "Catalysis of the transfer of ATG12 from one protein to another via the reaction X-ATG12 + Y --> Y-ATG12 + X, where both X-ATG12 and Y-ATG12 are covalent linkages." [GOC:mah, PMID:12826404] +def: "Catalysis of the transfer of ATG12 from one protein to another via the reaction X-ATG12 + Y = Y-ATG12 + X, where both X-ATG12 and Y-ATG12 are covalent linkages." [GOC:mah, PMID:12826404] synonym: "APG12 conjugating enzyme activity" NARROW [] synonym: "APG12 ligase activity" NARROW [] synonym: "Atg12 conjugating enzyme activity" NARROW [] @@ -52283,38 +54798,19 @@ def: "Catalysis of the activation of the small ubiquitin-related modifier APG12, synonym: "APG12 activating enzyme activity" RELATED [GOC:vw] is_a: GO:0008641 ! ubiquitin-like modifier activating enzyme activity -[Term] -id: GO:0019783 -name: ubiquitin-like protein peptidase activity -namespace: molecular_function -alt_id: GO:0070138 -alt_id: GO:0140491 -alt_id: GO:1904454 -alt_id: GO:1904455 -def: "An isopeptidase activity that cleaves ubiquitin or ubiquitin-like proteins (ULP; e.g. ATG8, ISG15, NEDD8, SUMO) from target proteins." [PMID:19489724] -comment: While ubiquitin-like proteins can be rarely linked to substrates via bonds other than isopeptide bonds, all known ubiquitin-like peptidases cleave the isopeptide bond. -synonym: "small conjugating protein-specific isopeptidase activity" EXACT [GOC:dph] -synonym: "small conjugating protein-specific protease activity" EXACT [GOC:dph] -synonym: "ubiquitin-like hydrolase activity" EXACT [] -synonym: "ubiquitin-like protein-specific isopeptidase activity" EXACT [] -synonym: "ubiquitin-like protein-specific protease activity" EXACT [] -synonym: "ubiquitin-like specific protease activity" NARROW [] -synonym: "ubiquitin-like-protein-specific protease activity" NARROW [] -synonym: "ubiquitin-specific protease activity involved in negative regulation of ERAD pathway" NARROW [] -synonym: "ubiquitin-specific protease activity involved in positive regulation of ERAD pathway" NARROW [] -synonym: "ubiquitinyl-like hydrolase activity" EXACT [] -is_a: GO:0008233 ! peptidase activity - [Term] id: GO:0019786 -name: Atg8-specific peptidase activity +name: protein-phosphatidylethanolamide deconjugating activity namespace: molecular_function -def: "A thiol-dependent isopeptidase activity that cleaves APG8 from a target protein to which it is conjugated." [GOC:mah, PMID:28901328] -synonym: "APG8-PE hydrolase" RELATED [] -synonym: "APG8-specific protease activity" RELATED [GOC:vw] -synonym: "Atg8-specific protease activity" EXACT [] -is_a: GO:0008234 ! cysteine-type peptidase activity -is_a: GO:0019783 ! ubiquitin-like protein peptidase activity +def: "Catalysis of the reaction: [protein]-C-terminal L-amino acid-glycyl-phosphatidylethanolamide + H2O = [protein]-C-terminal L-amino acid-glycine + a 1,2-diacyl-sn-glycero-3-phosphoethanolamine. An example of this reaction is the removal of ATG8 from membranes to which it is covalently linked to a phosphatidylethanolamid via its terminal glycine residue." [PMID:22240591, PMID:22652539, PMID:28330855, PMID:2882172, PMID:28901328] +synonym: "APG8-PE hydrolase" RELATED [] {source="skos:narrowMatch"} +synonym: "APG8-specific protease activity" NARROW [GOC:vw] +synonym: "ATG8-PE deconjugation activity" NARROW [] {source="skos:narrowMatch"} +synonym: "ATG8-PE hydrolase activity" NARROW [] {source="skos:narrowMatch"} +synonym: "Atg8-specific peptidase activity" NARROW [] {source="skos:narrowMatch"} +synonym: "Atg8-specific protease activity" EXACT [] {source="skos:narrowMatch"} +is_a: GO:0016787 ! hydrolase activity +is_a: GO:0140096 ! catalytic activity, acting on a protein [Term] id: GO:0019787 @@ -52322,10 +54818,10 @@ name: ubiquitin-like protein transferase activity namespace: molecular_function alt_id: GO:0008639 alt_id: GO:0008640 -def: "Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y --> Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein." [GOC:mah, GOC:rn, PMID:10806345, PMID:10884686] +def: "Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y = Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein." [GOC:mah, GOC:rn, PMID:10806345, PMID:10884686] subset: goslim_drosophila subset: goslim_pir -synonym: "E2" RELATED [] +synonym: "E2" BROAD [] synonym: "E3" RELATED [GOC:dph] synonym: "small conjugating protein ligase activity" NARROW [GOC:dph] synonym: "small conjugating protein transferase activity" EXACT [GOC:dph] @@ -52335,6 +54831,7 @@ synonym: "ubiquitin-like-protein ligase activity" NARROW [] xref: Reactome:R-HSA-5678490 "ATG16L1 complex transfers LC3 from ATG3 to PE" xref: Reactome:R-HSA-688137 "RIP2 is K63 polyubiquitinated" is_a: GO:0016755 ! aminoacyltransferase activity +is_a: GO:0140096 ! catalytic activity, acting on a protein [Term] id: GO:0019814 @@ -56001,8 +58498,6 @@ synonym: "estrous cycle process" RELATED [] synonym: "menstrual cycle process" RELATED [] is_a: GO:0022414 ! reproductive process is_a: GO:0048511 ! rhythmic process -intersection_of: GO:0008150 ! biological_process -intersection_of: part_of GO:0042698 ! ovulation cycle relationship: in_taxon NCBITaxon:33208 ! Metazoa relationship: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: part_of GO:0042698 ! ovulation cycle @@ -56188,7 +58683,7 @@ id: GO:0022898 name: regulation of transmembrane transporter activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of transmembrane transporter activity." [GOC:dph, GOC:mtg_cardio, GOC:mtg_transport] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0032409 ! regulation of transporter activity is_a: GO:0034762 ! regulation of transmembrane transport intersection_of: GO:0065007 ! biological regulation @@ -57637,6 +60132,17 @@ synonym: "female genital development" EXACT [] is_a: GO:0048806 ! genitalia development relationship: part_of GO:0046660 ! female sex differentiation +[Term] +id: GO:0030554 +name: adenyl nucleotide binding +namespace: molecular_function +def: "Binding to an adenyl nucleotide, an adenosine esterified with (ortho)phosphate." [ISBN:0198506732] +subset: goslim_chembl +is_a: GO:0017076 ! purine nucleotide binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:61293 ! adenyl nucleotide +relationship: has_input CHEBI:61293 ! adenyl nucleotide + [Term] id: GO:0030573 name: bile acid catabolic process @@ -57894,6 +60400,115 @@ relationship: in_taxon NCBITaxon:50557 ! Insecta relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of GO:0007293 ! germarium-derived egg chamber formation +[Term] +id: GO:0030808 +name: regulation of nucleotide biosynthetic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides." [GOC:mah] +synonym: "regulation of nucleotide anabolism" EXACT [] +synonym: "regulation of nucleotide biosynthesis" EXACT [] +synonym: "regulation of nucleotide formation" EXACT [] +synonym: "regulation of nucleotide synthesis" EXACT [] +is_a: GO:0006140 ! regulation of nucleotide metabolic process +is_a: GO:0031326 ! regulation of cellular biosynthetic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0009165 ! nucleotide biosynthetic process +relationship: regulates GO:0009165 ! nucleotide biosynthetic process + +[Term] +id: GO:0030809 +name: negative regulation of nucleotide biosynthetic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides." [GOC:mah] +synonym: "down regulation of nucleotide biosynthetic process" EXACT [] +synonym: "down-regulation of nucleotide biosynthetic process" EXACT [] +synonym: "downregulation of nucleotide biosynthetic process" EXACT [] +synonym: "inhibition of nucleotide biosynthetic process" NARROW [] +synonym: "negative regulation of nucleotide anabolism" EXACT [] +synonym: "negative regulation of nucleotide biosynthesis" EXACT [] +synonym: "negative regulation of nucleotide formation" EXACT [] +synonym: "negative regulation of nucleotide synthesis" EXACT [] +is_a: GO:0030808 ! regulation of nucleotide biosynthetic process +is_a: GO:0031327 ! negative regulation of cellular biosynthetic process +is_a: GO:0045980 ! negative regulation of nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0009165 ! nucleotide biosynthetic process +relationship: negatively_regulates GO:0009165 ! nucleotide biosynthetic process + +[Term] +id: GO:0030810 +name: positive regulation of nucleotide biosynthetic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides." [GOC:mah] +synonym: "activation of nucleotide biosynthetic process" NARROW [] +synonym: "positive regulation of nucleotide anabolism" EXACT [] +synonym: "positive regulation of nucleotide biosynthesis" EXACT [] +synonym: "positive regulation of nucleotide formation" EXACT [] +synonym: "positive regulation of nucleotide synthesis" EXACT [] +synonym: "stimulation of nucleotide biosynthetic process" NARROW [] +synonym: "up regulation of nucleotide biosynthetic process" EXACT [] +synonym: "up-regulation of nucleotide biosynthetic process" EXACT [] +synonym: "upregulation of nucleotide biosynthetic process" EXACT [] +is_a: GO:0030808 ! regulation of nucleotide biosynthetic process +is_a: GO:0031328 ! positive regulation of cellular biosynthetic process +is_a: GO:0045981 ! positive regulation of nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0009165 ! nucleotide biosynthetic process +relationship: positively_regulates GO:0009165 ! nucleotide biosynthetic process + +[Term] +id: GO:0030811 +name: regulation of nucleotide catabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides." [GOC:mah] +synonym: "regulation of nucleotide breakdown" EXACT [] +synonym: "regulation of nucleotide catabolism" EXACT [] +synonym: "regulation of nucleotide degradation" EXACT [] +is_a: GO:0006140 ! regulation of nucleotide metabolic process +is_a: GO:0031329 ! regulation of cellular catabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0009166 ! nucleotide catabolic process +relationship: regulates GO:0009166 ! nucleotide catabolic process + +[Term] +id: GO:0030812 +name: negative regulation of nucleotide catabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides." [GOC:mah] +synonym: "down regulation of nucleotide catabolic process" EXACT [] +synonym: "down-regulation of nucleotide catabolic process" EXACT [] +synonym: "downregulation of nucleotide catabolic process" EXACT [] +synonym: "inhibition of nucleotide catabolic process" NARROW [] +synonym: "negative regulation of nucleotide breakdown" EXACT [] +synonym: "negative regulation of nucleotide catabolism" EXACT [] +synonym: "negative regulation of nucleotide degradation" EXACT [] +is_a: GO:0030811 ! regulation of nucleotide catabolic process +is_a: GO:0031330 ! negative regulation of cellular catabolic process +is_a: GO:0045980 ! negative regulation of nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0009166 ! nucleotide catabolic process +relationship: negatively_regulates GO:0009166 ! nucleotide catabolic process + +[Term] +id: GO:0030813 +name: positive regulation of nucleotide catabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides." [GOC:mah] +synonym: "activation of nucleotide catabolic process" NARROW [] +synonym: "positive regulation of nucleotide breakdown" EXACT [] +synonym: "positive regulation of nucleotide catabolism" EXACT [] +synonym: "positive regulation of nucleotide degradation" EXACT [] +synonym: "stimulation of nucleotide catabolic process" NARROW [] +synonym: "up regulation of nucleotide catabolic process" EXACT [] +synonym: "up-regulation of nucleotide catabolic process" EXACT [] +synonym: "upregulation of nucleotide catabolic process" EXACT [] +is_a: GO:0030811 ! regulation of nucleotide catabolic process +is_a: GO:0031331 ! positive regulation of cellular catabolic process +is_a: GO:0045981 ! positive regulation of nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0009166 ! nucleotide catabolic process +relationship: positively_regulates GO:0009166 ! nucleotide catabolic process + [Term] id: GO:0030850 name: prostate gland development @@ -59666,7 +62281,7 @@ id: GO:0032069 name: regulation of nuclease activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of nuclease activity, the hydrolysis of ester linkages within nucleic acids." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "nuclease regulator activity" RELATED [] is_a: GO:0051336 ! regulation of hydrolase activity is_a: GO:0060255 ! regulation of macromolecule metabolic process @@ -59680,7 +62295,7 @@ id: GO:0032070 name: regulation of deoxyribonuclease activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of deoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "deoxyribonuclease regulator" RELATED [] synonym: "DNase regulator" RELATED [] is_a: GO:0032069 ! regulation of nuclease activity @@ -59694,7 +62309,7 @@ id: GO:0032074 name: negative regulation of nuclease activity namespace: biological_process def: "Any process that stops or reduces the rate of nuclease activity, the hydrolysis of ester linkages within nucleic acids." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of nuclease activity" EXACT [] synonym: "down-regulation of nuclease activity" EXACT [] synonym: "downregulation of nuclease activity" EXACT [] @@ -59713,7 +62328,7 @@ id: GO:0032075 name: positive regulation of nuclease activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of nuclease activity, the hydrolysis of ester linkages within nucleic acids." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of nuclease activity" NARROW [] synonym: "nuclease activator" RELATED [] synonym: "stimulation of nuclease activity" NARROW [] @@ -59733,7 +62348,7 @@ id: GO:0032076 name: negative regulation of deoxyribonuclease activity namespace: biological_process def: "Any process that stops or reduces the rate of deoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "deoxyribonuclease inhibitor" RELATED [] synonym: "DNase inhibitor" RELATED [] synonym: "down regulation of deoxyribonuclease activity" EXACT [] @@ -59752,7 +62367,7 @@ id: GO:0032077 name: positive regulation of deoxyribonuclease activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of deoxyribonuclease activity, the hydrolysis of ester linkages within deoxyribonucleic acid." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of deoxyribonuclease activity" NARROW [] synonym: "deoxyribonuclease activator" RELATED [] synonym: "DNase activator" RELATED [] @@ -59772,7 +62387,7 @@ id: GO:0032091 name: negative regulation of protein binding namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of protein binding" EXACT [] synonym: "down-regulation of protein binding" EXACT [] synonym: "downregulation of protein binding" EXACT [] @@ -59788,7 +62403,7 @@ id: GO:0032092 name: positive regulation of protein binding namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of protein binding." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of protein binding" NARROW [] synonym: "stimulation of protein binding" NARROW [] synonym: "up regulation of protein binding" EXACT [] @@ -60019,6 +62634,16 @@ intersection_of: positively_regulates GO:0051017 ! actin filament bundle assembl relationship: positively_regulates GO:0044085 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! cellular component biogenesis relationship: positively_regulates GO:0051017 ! actin filament bundle assembly +[Term] +id: GO:0032238 +name: adenosine transport +namespace: biological_process +def: "The directed movement of adenosine, adenine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] +is_a: GO:0015858 ! nucleoside transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:16335 ! adenosine +relationship: has_primary_input CHEBI:16335 ! adenosine + [Term] id: GO:0032239 name: regulation of nucleobase-containing compound transport @@ -60063,6 +62688,120 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0015931 ! nucleobase-containing compound transport relationship: positively_regulates GO:0015931 ! nucleobase-containing compound transport +[Term] +id: GO:0032242 +name: regulation of nucleoside transport +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] +is_a: GO:0032239 ! regulation of nucleobase-containing compound transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0015858 ! nucleoside transport +relationship: regulates GO:0015858 ! nucleoside transport + +[Term] +id: GO:0032243 +name: negative regulation of nucleoside transport +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] +synonym: "down regulation of nucleoside transport" EXACT [] +synonym: "down-regulation of nucleoside transport" EXACT [] +synonym: "downregulation of nucleoside transport" EXACT [] +synonym: "inhibition of nucleoside transport" NARROW [] +is_a: GO:0032240 ! negative regulation of nucleobase-containing compound transport +is_a: GO:0032242 ! regulation of nucleoside transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0015858 ! nucleoside transport +relationship: negatively_regulates GO:0015858 ! nucleoside transport + +[Term] +id: GO:0032244 +name: positive regulation of nucleoside transport +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the directed movement of a nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] +synonym: "activation of nucleoside transport" NARROW [] +synonym: "stimulation of nucleoside transport" NARROW [] +synonym: "up regulation of nucleoside transport" EXACT [] +synonym: "up-regulation of nucleoside transport" EXACT [] +synonym: "upregulation of nucleoside transport" EXACT [] +is_a: GO:0032241 ! positive regulation of nucleobase-containing compound transport +is_a: GO:0032242 ! regulation of nucleoside transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0015858 ! nucleoside transport +relationship: positively_regulates GO:0015858 ! nucleoside transport + +[Term] +id: GO:0032245 +name: regulation of purine nucleoside transport +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] +is_a: GO:0032242 ! regulation of nucleoside transport + +[Term] +id: GO:0032247 +name: negative regulation of purine nucleoside transport +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] +synonym: "down regulation of purine nucleoside transport" EXACT [] +synonym: "down-regulation of purine nucleoside transport" EXACT [] +synonym: "downregulation of purine nucleoside transport" EXACT [] +synonym: "inhibition of purine nucleoside transport" NARROW [] +is_a: GO:0032243 ! negative regulation of nucleoside transport +is_a: GO:0032245 ! regulation of purine nucleoside transport + +[Term] +id: GO:0032248 +name: positive regulation of purine nucleoside transport +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the directed movement of a purine nucleoside into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] +synonym: "activation of purine nucleoside transport" NARROW [] +synonym: "stimulation of purine nucleoside transport" NARROW [] +synonym: "up regulation of purine nucleoside transport" EXACT [] +synonym: "up-regulation of purine nucleoside transport" EXACT [] +synonym: "upregulation of purine nucleoside transport" EXACT [] +is_a: GO:0032244 ! positive regulation of nucleoside transport +is_a: GO:0032245 ! regulation of purine nucleoside transport + +[Term] +id: GO:0032249 +name: regulation of adenosine transport +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] +is_a: GO:0032245 ! regulation of purine nucleoside transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0032238 ! adenosine transport +relationship: regulates GO:0032238 ! adenosine transport + +[Term] +id: GO:0032250 +name: negative regulation of adenosine transport +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] +synonym: "down regulation of adenosine transport" EXACT [] +synonym: "down-regulation of adenosine transport" EXACT [] +synonym: "downregulation of adenosine transport" EXACT [] +synonym: "inhibition of adenosine transport" NARROW [] +is_a: GO:0032247 ! negative regulation of purine nucleoside transport +is_a: GO:0032249 ! regulation of adenosine transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0032238 ! adenosine transport +relationship: negatively_regulates GO:0032238 ! adenosine transport + +[Term] +id: GO:0032251 +name: positive regulation of adenosine transport +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the directed movement of adenosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] +synonym: "activation of adenosine transport" NARROW [] +synonym: "stimulation of adenosine transport" NARROW [] +synonym: "up regulation of adenosine transport" EXACT [] +synonym: "up-regulation of adenosine transport" EXACT [] +synonym: "upregulation of adenosine transport" EXACT [] +is_a: GO:0032248 ! positive regulation of purine nucleoside transport +is_a: GO:0032249 ! regulation of adenosine transport +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0032238 ! adenosine transport +relationship: positively_regulates GO:0032238 ! adenosine transport + [Term] id: GO:0032252 name: secretory granule localization @@ -60188,6 +62927,7 @@ name: myelin assembly namespace: biological_process def: "The process in which the wraps of cell membrane that constitute myelin are laid down around an axon in the central or peripheral nervous system." [GOC:dgh, GOC:dph, GOC:tb] synonym: "myelin formation" RELATED [GOC:dph, GOC:tb] +synonym: "myelin sheath assembly" EXACT [] is_a: GO:0010927 ! cellular component assembly involved in morphogenesis intersection_of: GO:0022607 ! cellular component assembly intersection_of: results_in_assembly_of GO:0043209 ! myelin sheath @@ -60199,6 +62939,7 @@ id: GO:0032289 name: central nervous system myelin formation namespace: biological_process def: "The process in which the wraps of cell membrane that constitute myelin are laid down around an axon by an oligodendrocyte in the central nervous system." [GOC:dgh] +synonym: "central nervous system myelin sheath formation" EXACT [] synonym: "myelin formation in central nervous system" EXACT [] is_a: GO:0032288 ! myelin assembly intersection_of: GO:0032288 ! myelin assembly @@ -60214,6 +62955,7 @@ name: peripheral nervous system myelin formation namespace: biological_process def: "The process in which the wraps of cell membrane that constitute myelin are laid down around an axon by Schwann cells in the peripheral nervous system." [GOC:dgh] synonym: "myelin formation in peripheral nervous system" EXACT [] +synonym: "peripheral nervous system myelin sheath formation" EXACT [] is_a: GO:0032288 ! myelin assembly intersection_of: GO:0032288 ! myelin assembly intersection_of: occurs_in UBERON:0000010 ! peripheral nervous system @@ -60694,7 +63436,7 @@ id: GO:0032409 name: regulation of transporter activity namespace: biological_process def: "Any process that modulates the activity of a transporter." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0005215 ! transporter activity @@ -60705,7 +63447,7 @@ id: GO:0032410 name: negative regulation of transporter activity namespace: biological_process def: "Any process that stops or reduces the activity of a transporter." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of transporter activity" EXACT [] synonym: "down-regulation of transporter activity" EXACT [] synonym: "downregulation of transporter activity" EXACT [] @@ -60722,7 +63464,7 @@ id: GO:0032411 name: positive regulation of transporter activity namespace: biological_process def: "Any process that activates or increases the activity of a transporter." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of transporter activity" NARROW [] synonym: "stimulation of transporter activity" NARROW [] synonym: "up regulation of transporter activity" EXACT [] @@ -60740,7 +63482,7 @@ id: GO:0032412 name: regulation of monoatomic ion transmembrane transporter activity namespace: biological_process def: "Any process that modulates the activity of an ion transporter." [GOC:mah, GOC:tb] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "regulation of ion transmembrane transporter activity" BROAD [] synonym: "regulation of ion transporter activity" EXACT [GOC:tb] is_a: GO:0022898 ! regulation of transmembrane transporter activity @@ -60753,7 +63495,7 @@ id: GO:0032413 name: negative regulation of ion transmembrane transporter activity namespace: biological_process def: "Any process that stops or reduces the activity of an ion transporter." [GOC:mah, GOC:tb] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of ion transporter activity" EXACT [] synonym: "down-regulation of ion transporter activity" EXACT [] synonym: "downregulation of ion transporter activity" EXACT [] @@ -60772,7 +63514,7 @@ id: GO:0032414 name: positive regulation of ion transmembrane transporter activity namespace: biological_process def: "Any process that activates or increases the activity of an ion transporter." [GOC:mah, GOC:tb] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of ion transporter activity" NARROW [] synonym: "positive regulation of ion transporter activity" EXACT [GOC:tb] synonym: "stimulation of ion transporter activity" NARROW [] @@ -60981,6 +63723,60 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0030033 ! microvillus assembly relationship: regulates GO:0030033 ! microvillus assembly +[Term] +id: GO:0032549 +name: ribonucleoside binding +namespace: molecular_function +def: "Binding to a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose." [GOC:mah] +is_a: GO:0001882 ! nucleoside binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:18254 ! ribonucleoside +relationship: has_input CHEBI:18254 ! ribonucleoside + +[Term] +id: GO:0032550 +name: purine ribonucleoside binding +namespace: molecular_function +def: "Binding to a purine ribonucleoside, a compound consisting of a purine base linked to ribose." [GOC:mah] +is_a: GO:0001883 ! purine nucleoside binding +is_a: GO:0032549 ! ribonucleoside binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:26399 ! purine ribonucleoside +relationship: has_input CHEBI:26399 ! purine ribonucleoside + +[Term] +id: GO:0032553 +name: ribonucleotide binding +namespace: molecular_function +def: "Binding to a ribonucleotide, any compound consisting of a ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety." [GOC:mah] +is_a: GO:0000166 ! nucleotide binding +is_a: GO:0097367 ! carbohydrate derivative binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:26561 ! ribonucleotide +relationship: has_input CHEBI:26561 ! ribonucleotide + +[Term] +id: GO:0032555 +name: purine ribonucleotide binding +namespace: molecular_function +def: "Binding to a purine ribonucleotide, any compound consisting of a purine ribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety." [GOC:mah] +is_a: GO:0017076 ! purine nucleotide binding +is_a: GO:0032553 ! ribonucleotide binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:26400 ! purine ribonucleotide +relationship: has_input CHEBI:26400 ! purine ribonucleotide + +[Term] +id: GO:0032559 +name: adenyl ribonucleotide binding +namespace: molecular_function +def: "Binding to an adenyl ribonucleotide, any compound consisting of adenosine esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose moiety." [GOC:mah] +is_a: GO:0030554 ! adenyl nucleotide binding +is_a: GO:0032555 ! purine ribonucleotide binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:61296 ! adenyl ribonucleotide +relationship: has_input CHEBI:61296 ! adenyl ribonucleotide + [Term] id: GO:0032570 name: response to progesterone @@ -61058,7 +63854,7 @@ id: GO:0032780 name: negative regulation of ATP-dependent activity namespace: biological_process def: "Any process that stops or reduces the rate of an ATP-dependent activity." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of ATPase activity" EXACT [] synonym: "down-regulation of ATPase activity" EXACT [] synonym: "downregulation of ATPase activity" EXACT [] @@ -61076,7 +63872,7 @@ id: GO:0032781 name: positive regulation of ATP-dependent activity namespace: biological_process def: "Any process that activates or increases the rate of an ATP-dependent activity." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of ATPase activity" NARROW [] synonym: "positive regulation of adenosinetriphosphatase activity" EXACT [] synonym: "positive regulation of ATPase activity" EXACT [] @@ -61639,8 +64435,6 @@ def: "The process in which cellular structures, including whole cells or cell pa subset: goslim_pir synonym: "cellular structure morphogenesis" EXACT [GOC:dph, GOC:tb] is_a: GO:0009653 ! anatomical structure morphogenesis -is_a: GO:0016043 ! cellular component organization -is_a: GO:0048869 ! cellular developmental process intersection_of: GO:0009653 ! anatomical structure morphogenesis intersection_of: results_in_morphogenesis_of GO:0005575 ! cellular_component relationship: results_in_morphogenesis_of GO:0005575 ! cellular_component @@ -62152,6 +64946,50 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0033080 ! immature T cell proliferation in thymus relationship: positively_regulates GO:0033080 ! immature T cell proliferation in thymus +[Term] +id: GO:0033121 +name: regulation of purine nucleotide catabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides." [GOC:mah] +synonym: "regulation of purine nucleotide breakdown" EXACT [] +synonym: "regulation of purine nucleotide catabolism" EXACT [] +synonym: "regulation of purine nucleotide degradation" EXACT [] +is_a: GO:0030811 ! regulation of nucleotide catabolic process +is_a: GO:1900542 ! regulation of purine nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0006195 ! purine nucleotide catabolic process +relationship: regulates GO:0006195 ! purine nucleotide catabolic process + +[Term] +id: GO:0033122 +name: negative regulation of purine nucleotide catabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides." [GOC:mah] +synonym: "negative regulation of purine nucleotide breakdown" EXACT [] +synonym: "negative regulation of purine nucleotide catabolism" EXACT [] +synonym: "negative regulation of purine nucleotide degradation" EXACT [] +is_a: GO:0030812 ! negative regulation of nucleotide catabolic process +is_a: GO:0033121 ! regulation of purine nucleotide catabolic process +is_a: GO:1900543 ! negative regulation of purine nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0006195 ! purine nucleotide catabolic process +relationship: negatively_regulates GO:0006195 ! purine nucleotide catabolic process + +[Term] +id: GO:0033123 +name: positive regulation of purine nucleotide catabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides." [GOC:mah] +synonym: "positive regulation of purine nucleotide breakdown" EXACT [] +synonym: "positive regulation of purine nucleotide catabolism" EXACT [] +synonym: "positive regulation of purine nucleotide degradation" EXACT [] +is_a: GO:0030813 ! positive regulation of nucleotide catabolic process +is_a: GO:0033121 ! regulation of purine nucleotide catabolic process +is_a: GO:1900544 ! positive regulation of purine nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0006195 ! purine nucleotide catabolic process +relationship: positively_regulates GO:0006195 ! purine nucleotide catabolic process + [Term] id: GO:0033143 name: regulation of intracellular steroid hormone receptor signaling pathway @@ -62240,6 +65078,18 @@ relationship: bounding_layer_of GO:0042470 ! melanosome relationship: part_of GO:0042470 ! melanosome relationship: part_of GO:0045009 ! chitosome +[Term] +id: GO:0033198 +name: response to ATP +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus." [GOC:sl] +synonym: "response to adenosine 5'-triphosphate" EXACT [] +synonym: "response to adenosine triphosphate" EXACT [] +is_a: GO:0010033 ! response to organic substance +intersection_of: GO:0050896 ! response to stimulus +intersection_of: has_input CHEBI:30616 ! ATP(4-) +relationship: has_input CHEBI:30616 ! ATP(4-) + [Term] id: GO:0033212 name: iron import into cell @@ -62492,7 +65342,7 @@ id: GO:0033341 name: regulation of collagen binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of collagen binding." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0005518 ! collagen binding @@ -62503,7 +65353,7 @@ id: GO:0033342 name: negative regulation of collagen binding namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of collagen binding." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of collagen binding" EXACT [] synonym: "down-regulation of collagen binding" EXACT [] synonym: "downregulation of collagen binding" EXACT [] @@ -62519,7 +65369,7 @@ id: GO:0033343 name: positive regulation of collagen binding namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of collagen binding." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of collagen binding" NARROW [] synonym: "stimulation of collagen binding" NARROW [] synonym: "up regulation of collagen binding" EXACT [] @@ -62757,7 +65607,7 @@ id: GO:0033673 name: negative regulation of kinase activity namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of kinase activity" EXACT [] synonym: "down-regulation of kinase activity" EXACT [] synonym: "downregulation of kinase activity" EXACT [] @@ -62776,7 +65626,7 @@ id: GO:0033674 name: positive regulation of kinase activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "kinase activator" NARROW [] synonym: "stimulation of kinase activity" NARROW [] synonym: "up regulation of kinase activity" EXACT [] @@ -63341,6 +66191,19 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0034390 ! smooth muscle cell apoptotic process relationship: positively_regulates GO:0034390 ! smooth muscle cell apoptotic process +[Term] +id: GO:0034404 +name: nucleobase-containing small molecule biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide." [GOC:mah] +synonym: "nucleobase, nucleoside and nucleotide anabolism" EXACT [] +synonym: "nucleobase, nucleoside and nucleotide biosynthesis" EXACT [] +synonym: "nucleobase, nucleoside and nucleotide formation" EXACT [] +synonym: "nucleobase, nucleoside and nucleotide synthesis" EXACT [] +is_a: GO:0034654 ! nucleobase-containing compound biosynthetic process +is_a: GO:0044283 ! small molecule biosynthetic process +is_a: GO:0055086 ! nucleobase-containing small molecule metabolic process + [Term] id: GO:0034429 name: tectobulbar tract morphogenesis @@ -63477,6 +66340,18 @@ intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity relationship: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity +[Term] +id: GO:0034656 +name: nucleobase-containing small molecule catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide." [GOC:mah] +synonym: "nucleobase, nucleoside and nucleotide breakdown" EXACT [] +synonym: "nucleobase, nucleoside and nucleotide catabolism" EXACT [] +synonym: "nucleobase, nucleoside and nucleotide degradation" EXACT [] +is_a: GO:0034655 ! nucleobase-containing compound catabolic process +is_a: GO:0044282 ! small molecule catabolic process +is_a: GO:0055086 ! nucleobase-containing small molecule metabolic process + [Term] id: GO:0034672 name: anterior/posterior pattern specification involved in pronephros development @@ -64576,7 +67451,7 @@ id: GO:0035561 name: regulation of chromatin binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of chromatin binding. Chromatin binding is the selective interaction with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase." [GOC:bf, PMID:20404130] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0003682 ! chromatin binding @@ -64589,7 +67464,7 @@ id: GO:0035562 name: negative regulation of chromatin binding namespace: biological_process def: "Any process that stops or reduces the frequency, rate or extent of chromatin binding. Chromatin binding is the selective interaction with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase." [GOC:bf, PMID:20404130] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0035561 ! regulation of chromatin binding is_a: GO:0051100 ! negative regulation of binding intersection_of: GO:0065007 ! biological regulation @@ -64603,7 +67478,7 @@ id: GO:0035563 name: positive regulation of chromatin binding namespace: biological_process def: "Any process that increases the frequency, rate or extent of chromatin binding. Chromatin binding is the selective interaction with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase." [GOC:bf, PMID:20404130] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0035561 ! regulation of chromatin binding is_a: GO:0051099 ! positive regulation of binding intersection_of: GO:0065007 ! biological regulation @@ -64627,6 +67502,45 @@ relationship: part_of GO:0042582 ! azurophil granule created_by: bf creation_date: 2010-10-05T01:29:10Z +[Term] +id: GO:0035588 +name: G protein-coupled purinergic receptor signaling pathway +namespace: biological_process +def: "A G protein-coupled receptor signaling pathway initiated by an extracellular purine or purine derivative binding to its receptor, and ending with the regulation of a downstream cellular process." [GOC:BHF, PMID:9755289] +synonym: "G-protein coupled purinergic receptor signaling pathway" EXACT [] +synonym: "G-protein coupled purinergic receptor signalling pathway" EXACT [GOC:mah] +is_a: GO:0007186 ! G protein-coupled receptor signaling pathway +is_a: GO:0035590 ! purinergic nucleotide receptor signaling pathway +created_by: bf +creation_date: 2010-10-22T11:11:53Z + +[Term] +id: GO:0035589 +name: G protein-coupled purinergic nucleotide receptor signaling pathway +namespace: biological_process +def: "A G protein-coupled receptor signaling pathway initiated by an extracellular purine nucleotide binding to its receptor, and ending with the regulation of a downstream cellular process." [GOC:BHF, PMID:9755289] +synonym: "G-protein coupled purinergic nucleotide receptor signaling pathway" EXACT [] +synonym: "G-protein coupled purinergic nucleotide receptor signalling pathway" EXACT [GOC:mah] +synonym: "P2Y receptor signaling pathway" EXACT [PMID:9755289] +is_a: GO:0035590 ! purinergic nucleotide receptor signaling pathway +created_by: bf +creation_date: 2010-10-22T11:18:59Z + +[Term] +id: GO:0035590 +name: purinergic nucleotide receptor signaling pathway +namespace: biological_process +alt_id: GO:0035587 +def: "The series of molecular signals initiated by an extracellular purine nucleotide binding to its receptor, and ending with the regulation of a downstream cellular process, e.g. transcription." [GOC:BHF, PMID:9755289] +synonym: "P2 receptor signaling pathway" RELATED [PMID:9755289] +synonym: "purinergic nucleotide receptor signalling pathway" EXACT [GOC:mah] +synonym: "purinergic receptor signaling pathway" RELATED [] +synonym: "purinergic receptor signalling pathway" RELATED [GOC:mah] +synonym: "purinoceptor signaling pathway" RELATED [PMID:9755289] +is_a: GO:0007166 ! cell surface receptor signaling pathway +created_by: bf +creation_date: 2010-10-22T11:09:40Z + [Term] id: GO:0035592 name: establishment of protein localization to extracellular region @@ -64696,6 +67610,19 @@ relationship: part_of GO:0043931 ! ossification involved in bone maturation created_by: bf creation_date: 2010-12-20T01:57:31Z +[Term] +id: GO:0035639 +name: purine ribonucleoside triphosphate binding +namespace: molecular_function +def: "Binding to a purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar." [GOC:BHF, GOC:ebc, ISBN:0198506732] +synonym: "purine NTP binding" BROAD [GOC:ebc] +is_a: GO:1901265 ! nucleoside phosphate binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:26398 ! purine ribonucleoside triphosphate +relationship: has_input CHEBI:26398 ! purine ribonucleoside triphosphate +created_by: bf +creation_date: 2011-01-14T02:46:42Z + [Term] id: GO:0035645 name: enteric smooth muscle cell differentiation @@ -67287,6 +70214,20 @@ intersection_of: GO:0005488 ! binding intersection_of: has_input CHEBI:16670 ! peptide relationship: has_input CHEBI:16670 ! peptide +[Term] +id: GO:0042278 +name: purine nucleoside metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside)." [GOC:jl, ISBN:0140512713] +synonym: "purine metabolic process" BROAD [] +synonym: "purine metabolism" BROAD [] +synonym: "purine nucleoside metabolism" EXACT [] +is_a: GO:0009116 ! nucleoside metabolic process +is_a: GO:0072521 ! purine-containing compound metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26394 ! purine nucleoside +relationship: has_primary_input_or_output CHEBI:26394 ! purine nucleoside + [Term] id: GO:0042301 name: phosphate ion binding @@ -67939,6 +70880,51 @@ intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:17026 ! progesterone relationship: has_primary_input_or_output CHEBI:17026 ! progesterone +[Term] +id: GO:0042451 +name: purine nucleoside biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of any purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside)." [GOC:go_curators] +synonym: "purine nucleoside anabolism" EXACT [] +synonym: "purine nucleoside biosynthesis" EXACT [] +synonym: "purine nucleoside formation" EXACT [] +synonym: "purine nucleoside synthesis" EXACT [] +is_a: GO:0009163 ! nucleoside biosynthetic process +is_a: GO:0042278 ! purine nucleoside metabolic process +is_a: GO:0072522 ! purine-containing compound biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26394 ! purine nucleoside +relationship: has_primary_output CHEBI:26394 ! purine nucleoside + +[Term] +id: GO:0042454 +name: ribonucleoside catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule." [GOC:jl] +synonym: "ribonucleoside breakdown" EXACT [] +synonym: "ribonucleoside catabolism" EXACT [] +synonym: "ribonucleoside degradation" EXACT [] +is_a: GO:0009119 ! ribonucleoside metabolic process +is_a: GO:0009164 ! nucleoside catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:18254 ! ribonucleoside +relationship: has_primary_input CHEBI:18254 ! ribonucleoside + +[Term] +id: GO:0042455 +name: ribonucleoside biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule." [GOC:jl] +synonym: "ribonucleoside anabolism" EXACT [] +synonym: "ribonucleoside biosynthesis" EXACT [] +synonym: "ribonucleoside formation" EXACT [] +synonym: "ribonucleoside synthesis" EXACT [] +is_a: GO:0009119 ! ribonucleoside metabolic process +is_a: GO:0009163 ! nucleoside biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:18254 ! ribonucleoside +relationship: has_primary_output CHEBI:18254 ! ribonucleoside + [Term] id: GO:0042461 name: photoreceptor cell development @@ -69060,8 +72046,8 @@ name: positive regulation of catalytic activity namespace: biological_process alt_id: GO:0048554 def: "Any process that activates or increases the activity of an enzyme." [GOC:ebc, GOC:jl, GOC:tb, GOC:vw] +subset: gocheck_do_not_annotate subset: goslim_chembl -subset: term_scheduled_for_obsoletion synonym: "activation of enzyme activity" NARROW [] synonym: "activation of metalloenzyme activity" NARROW [] synonym: "positive regulation of enzyme activity" EXACT [GOC:tb] @@ -69086,7 +72072,7 @@ name: negative regulation of catalytic activity namespace: biological_process alt_id: GO:0048553 def: "Any process that stops or reduces the activity of an enzyme." [GOC:ebc, GOC:jl, GOC:tb, GOC:vw] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of enzyme activity" EXACT [] synonym: "down regulation of metalloenzyme activity" NARROW [] synonym: "down-regulation of enzyme activity" EXACT [] @@ -69869,7 +72855,7 @@ id: GO:0043388 name: positive regulation of DNA binding namespace: biological_process def: "Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid)." [GOC:dph, GOC:jl, GOC:tb] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of DNA binding" NARROW [] synonym: "stimulation of DNA binding" NARROW [] synonym: "up regulation of DNA binding" EXACT [] @@ -69886,7 +72872,7 @@ id: GO:0043392 name: negative regulation of DNA binding namespace: biological_process def: "Any process that stops or reduces the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid)." [GOC:dph, GOC:jl, GOC:tb] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of DNA binding" EXACT [] synonym: "down-regulation of DNA binding" EXACT [] synonym: "downregulation of DNA binding" EXACT [] @@ -69902,7 +72888,7 @@ id: GO:0043393 name: regulation of protein binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of protein binding." [GOC:go_curators] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0005515 ! protein binding @@ -70091,7 +73077,7 @@ id: GO:0043462 name: regulation of ATP-dependent activity namespace: biological_process def: "Any process that modulates the rate of an ATP-dependent activity." [GOC:jl] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "regulation of adenosinetriphosphatase activity" EXACT [] synonym: "regulation of ATPase activity" EXACT [] is_a: GO:0065009 ! regulation of molecular function @@ -70243,6 +73229,18 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0051402 ! neuron apoptotic process relationship: positively_regulates GO:0051402 ! neuron apoptotic process +[Term] +id: GO:0043531 +name: ADP binding +namespace: molecular_function +def: "Binding to ADP, adenosine 5'-diphosphate." [GOC:jl] +synonym: "adenosine 5'-diphosphate binding" EXACT [] +synonym: "adenosine diphosphate binding" EXACT [] +is_a: GO:0043168 ! anion binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:456216 ! ADP(3-) +relationship: has_input CHEBI:456216 ! ADP(3-) + [Term] id: GO:0043534 name: blood vessel endothelial cell migration @@ -70309,7 +73307,7 @@ id: GO:0043549 name: regulation of kinase activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:bf] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0042325 ! regulation of phosphorylation is_a: GO:0051338 ! regulation of transferase activity intersection_of: GO:0065007 ! biological regulation @@ -70718,7 +73716,7 @@ id: GO:0044092 name: negative regulation of molecular function namespace: biological_process def: "Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GO:jl] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation intersection_of: negatively_regulates GO:0003674 ! molecular_function @@ -70731,7 +73729,7 @@ id: GO:0044093 name: positive regulation of molecular function namespace: biological_process def: "Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GO:jl] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0003674 ! molecular_function @@ -71104,11 +74102,11 @@ creation_date: 2013-03-27T15:09:58Z [Term] id: GO:0044804 -name: autophagy of nucleus +name: nucleophagy namespace: biological_process def: "A form of autophagy, by which damaged or non-essential parts of the nucleus, or even an entire nucleus is degraded." [GOC:autophagy, GOC:jl, PMID:24013549] -synonym: "nucleophagy" RELATED [] -synonym: "nucleus degradation" EXACT [] +synonym: "autophagy of nucleus" EXACT [] +synonym: "nucleus degradation" RELATED [] is_a: GO:0006914 ! autophagy intersection_of: GO:0006914 ! autophagy intersection_of: has_input GO:0005634 ! nucleus @@ -71206,6 +74204,36 @@ intersection_of: GO:0009987 ! cellular process intersection_of: results_in_fusion_of GO:0005886 ! plasma membrane relationship: results_in_fusion_of GO:0005886 ! plasma membrane +[Term] +id: GO:0045028 +name: G protein-coupled purinergic nucleotide receptor activity +namespace: molecular_function +def: "Combining with a purine nucleotide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." [GOC:mah, PMID:9755289] +synonym: "G protein coupled purinergic nucleotide receptor activity" EXACT [] +synonym: "G-protein coupled purinergic nucleotide receptor activity" EXACT [] +synonym: "P2Y" RELATED [] +synonym: "P2Y receptor" RELATED [PMID:9755289] +synonym: "purinergic nucleotide receptor activity, G protein coupled" EXACT [] +synonym: "purinergic nucleotide receptor activity, G-protein coupled" EXACT [GOC:bf] +is_a: GO:0001614 ! purinergic nucleotide receptor activity +is_a: GO:0004930 ! G protein-coupled receptor activity +intersection_of: GO:0004930 ! G protein-coupled receptor activity +intersection_of: has_input CHEBI:26395 ! purine nucleotide +relationship: has_input CHEBI:26395 ! purine nucleotide +relationship: part_of GO:0035589 ! G protein-coupled purinergic nucleotide receptor signaling pathway + +[Term] +id: GO:0045031 +name: G protein-coupled ATP receptor activity +namespace: molecular_function +def: "Combining with ATP and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." [GOC:mah] +synonym: "ATP-activated adenosine receptor activity" RELATED [] +synonym: "ATP-activated nucleotide receptor activity" BROAD [] +is_a: GO:0004930 ! G protein-coupled receptor activity +intersection_of: GO:0004930 ! G protein-coupled receptor activity +intersection_of: has_input CHEBI:30616 ! ATP(4-) +relationship: has_input CHEBI:30616 ! ATP(4-) + [Term] id: GO:0045055 name: regulated exocytosis @@ -73838,7 +76866,7 @@ id: GO:0045859 name: regulation of protein kinase activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of protein kinase activity." [GOC:go_curators] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0001932 ! regulation of protein phosphorylation is_a: GO:0043549 ! regulation of kinase activity intersection_of: GO:0065007 ! biological regulation @@ -73851,7 +76879,7 @@ id: GO:0045860 name: positive regulation of protein kinase activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of protein kinase activity." [GOC:go_curators] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "stimulation of protein kinase activity" NARROW [] synonym: "up regulation of protein kinase activity" EXACT [] synonym: "up-regulation of protein kinase activity" EXACT [] @@ -74578,6 +77606,115 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0045443 ! juvenile hormone secretion relationship: positively_regulates GO:0045443 ! juvenile hormone secretion +[Term] +id: GO:0045978 +name: negative regulation of nucleoside metabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleosides." [GOC:go_curators] +synonym: "down regulation of nucleoside metabolic process" EXACT [] +synonym: "down-regulation of nucleoside metabolic process" EXACT [] +synonym: "downregulation of nucleoside metabolic process" EXACT [] +synonym: "inhibition of nucleoside metabolic process" NARROW [] +synonym: "negative regulation of nucleoside metabolism" EXACT [] +is_a: GO:0009118 ! regulation of nucleoside metabolic process +is_a: GO:0045934 ! negative regulation of nucleobase-containing compound metabolic process +is_a: GO:0062014 ! negative regulation of small molecule metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0009116 ! nucleoside metabolic process +relationship: negatively_regulates GO:0009116 ! nucleoside metabolic process + +[Term] +id: GO:0045979 +name: positive regulation of nucleoside metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleosides." [GOC:go_curators] +synonym: "activation of nucleoside metabolic process" NARROW [] +synonym: "positive regulation of nucleoside metabolism" EXACT [] +synonym: "stimulation of nucleoside metabolic process" NARROW [] +synonym: "up regulation of nucleoside metabolic process" EXACT [] +synonym: "up-regulation of nucleoside metabolic process" EXACT [] +synonym: "upregulation of nucleoside metabolic process" EXACT [] +is_a: GO:0009118 ! regulation of nucleoside metabolic process +is_a: GO:0045935 ! positive regulation of nucleobase-containing compound metabolic process +is_a: GO:0062013 ! positive regulation of small molecule metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0009116 ! nucleoside metabolic process +relationship: positively_regulates GO:0009116 ! nucleoside metabolic process + +[Term] +id: GO:0045980 +name: negative regulation of nucleotide metabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleotides." [GOC:go_curators] +synonym: "down regulation of nucleotide metabolic process" EXACT [] +synonym: "down-regulation of nucleotide metabolic process" EXACT [] +synonym: "downregulation of nucleotide metabolic process" EXACT [] +synonym: "inhibition of nucleotide metabolic process" NARROW [] +synonym: "negative regulation of nucleotide metabolism" EXACT [] +is_a: GO:0006140 ! regulation of nucleotide metabolic process +is_a: GO:0045934 ! negative regulation of nucleobase-containing compound metabolic process +is_a: GO:0045936 ! negative regulation of phosphate metabolic process +is_a: GO:0062014 ! negative regulation of small molecule metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0009117 ! nucleotide metabolic process +relationship: negatively_regulates GO:0009117 ! nucleotide metabolic process + +[Term] +id: GO:0045981 +name: positive regulation of nucleotide metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleotides." [GOC:go_curators] +synonym: "activation of nucleotide metabolic process" NARROW [] +synonym: "positive regulation of nucleotide metabolism" EXACT [] +synonym: "stimulation of nucleotide metabolic process" NARROW [] +synonym: "up regulation of nucleotide metabolic process" EXACT [] +synonym: "up-regulation of nucleotide metabolic process" EXACT [] +synonym: "upregulation of nucleotide metabolic process" EXACT [] +is_a: GO:0006140 ! regulation of nucleotide metabolic process +is_a: GO:0045935 ! positive regulation of nucleobase-containing compound metabolic process +is_a: GO:0045937 ! positive regulation of phosphate metabolic process +is_a: GO:0062013 ! positive regulation of small molecule metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0009117 ! nucleotide metabolic process +relationship: positively_regulates GO:0009117 ! nucleotide metabolic process + +[Term] +id: GO:0045982 +name: negative regulation of purine nucleobase metabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving purine nucleobases." [GOC:go_curators] +synonym: "down regulation of purine base metabolic process" EXACT [] +synonym: "down-regulation of purine base metabolic process" EXACT [] +synonym: "downregulation of purine base metabolic process" EXACT [] +synonym: "inhibition of purine base metabolic process" NARROW [] +synonym: "negative regulation of purine base metabolic process" EXACT [GOC:go_curators] +synonym: "negative regulation of purine base metabolism" EXACT [] +is_a: GO:0006141 ! regulation of purine nucleobase metabolic process +is_a: GO:0045934 ! negative regulation of nucleobase-containing compound metabolic process +is_a: GO:0062014 ! negative regulation of small molecule metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0006144 ! purine nucleobase metabolic process +relationship: negatively_regulates GO:0006144 ! purine nucleobase metabolic process + +[Term] +id: GO:0045983 +name: positive regulation of purine nucleobase metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving purine bases." [GOC:go_curators] +synonym: "activation of purine base metabolic process" NARROW [] +synonym: "positive regulation of purine base metabolic process" EXACT [] +synonym: "positive regulation of purine base metabolism" EXACT [] +synonym: "stimulation of purine base metabolic process" NARROW [] +synonym: "up regulation of purine base metabolic process" EXACT [] +synonym: "up-regulation of purine base metabolic process" EXACT [] +synonym: "upregulation of purine base metabolic process" EXACT [] +is_a: GO:0006141 ! regulation of purine nucleobase metabolic process +is_a: GO:0045935 ! positive regulation of nucleobase-containing compound metabolic process +is_a: GO:0062013 ! positive regulation of small molecule metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0006144 ! purine nucleobase metabolic process +relationship: positively_regulates GO:0006144 ! purine nucleobase metabolic process + [Term] id: GO:0045986 name: negative regulation of smooth muscle contraction @@ -74717,6 +77854,94 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: negatively_regulates GO:0001777 ! T cell homeostatic proliferation relationship: negatively_regulates GO:0001777 ! T cell homeostatic proliferation +[Term] +id: GO:0046031 +name: ADP metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving ADP, adenosine 5'-diphosphate." [GOC:go_curators] +synonym: "ADP metabolism" EXACT [] +is_a: GO:0009132 ! nucleoside diphosphate metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:456216 ! ADP(3-) +relationship: has_primary_input_or_output CHEBI:456216 ! ADP(3-) + +[Term] +id: GO:0046032 +name: ADP catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of ADP, adenosine 5'-diphosphate." [GOC:go_curators] +synonym: "ADP breakdown" EXACT [] +synonym: "ADP catabolism" EXACT [] +synonym: "ADP degradation" EXACT [] +is_a: GO:0009134 ! nucleoside diphosphate catabolic process +is_a: GO:0046031 ! ADP metabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:456216 ! ADP(3-) +relationship: has_primary_input CHEBI:456216 ! ADP(3-) + +[Term] +id: GO:0046034 +name: ATP metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator." [GOC:go_curators] +synonym: "ATP metabolism" EXACT [] +is_a: GO:0009141 ! nucleoside triphosphate metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:30616 ! ATP(4-) +relationship: has_primary_input_or_output CHEBI:30616 ! ATP(4-) + +[Term] +id: GO:0046083 +name: adenine metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine." [GOC:go_curators] +synonym: "adenine metabolism" EXACT [] +is_a: GO:0006144 ! purine nucleobase metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:16708 ! adenine +relationship: has_primary_input_or_output CHEBI:16708 ! adenine + +[Term] +id: GO:0046084 +name: adenine biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine." [GOC:go_curators] +synonym: "adenine anabolism" EXACT [] +synonym: "adenine biosynthesis" EXACT [] +synonym: "adenine formation" EXACT [] +synonym: "adenine synthesis" EXACT [] +is_a: GO:0009113 ! purine nucleobase biosynthetic process +is_a: GO:0046083 ! adenine metabolic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:16708 ! adenine +relationship: has_primary_output CHEBI:16708 ! adenine + +[Term] +id: GO:0046085 +name: adenosine metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes." [GOC:go_curators] +synonym: "adenosine metabolism" EXACT [] +is_a: GO:0046128 ! purine ribonucleoside metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:16335 ! adenosine +relationship: has_primary_input_or_output CHEBI:16335 ! adenosine + +[Term] +id: GO:0046086 +name: adenosine biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes." [GOC:go_curators] +synonym: "adenosine anabolism" EXACT [] +synonym: "adenosine biosynthesis" EXACT [] +synonym: "adenosine formation" EXACT [] +synonym: "adenosine synthesis" EXACT [] +is_a: GO:0046085 ! adenosine metabolic process +is_a: GO:0046129 ! purine ribonucleoside biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:16335 ! adenosine +relationship: has_primary_output CHEBI:16335 ! adenosine + [Term] id: GO:0046112 name: nucleobase biosynthetic process @@ -74750,6 +77975,49 @@ intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:18282 ! nucleobase relationship: has_primary_input CHEBI:18282 ! nucleobase +[Term] +id: GO:0046128 +name: purine ribonucleoside metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule." [GOC:ai] +synonym: "purine ribonucleoside metabolism" EXACT [] +is_a: GO:0009119 ! ribonucleoside metabolic process +is_a: GO:0042278 ! purine nucleoside metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26399 ! purine ribonucleoside +relationship: has_primary_input_or_output CHEBI:26399 ! purine ribonucleoside + +[Term] +id: GO:0046129 +name: purine ribonucleoside biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule." [GOC:ai] +synonym: "purine ribonucleoside anabolism" EXACT [] +synonym: "purine ribonucleoside biosynthesis" EXACT [] +synonym: "purine ribonucleoside formation" EXACT [] +synonym: "purine ribonucleoside synthesis" EXACT [] +is_a: GO:0042451 ! purine nucleoside biosynthetic process +is_a: GO:0042455 ! ribonucleoside biosynthetic process +is_a: GO:0046128 ! purine ribonucleoside metabolic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26399 ! purine ribonucleoside +relationship: has_primary_output CHEBI:26399 ! purine ribonucleoside + +[Term] +id: GO:0046130 +name: purine ribonucleoside catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule." [GOC:ai] +synonym: "purine ribonucleoside breakdown" EXACT [] +synonym: "purine ribonucleoside catabolism" EXACT [] +synonym: "purine ribonucleoside degradation" EXACT [] +is_a: GO:0006152 ! purine nucleoside catabolic process +is_a: GO:0042454 ! ribonucleoside catabolic process +is_a: GO:0046128 ! purine ribonucleoside metabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26399 ! purine ribonucleoside +relationship: has_primary_input CHEBI:26399 ! purine ribonucleoside + [Term] id: GO:0046148 name: pigment biosynthetic process @@ -74991,6 +78259,22 @@ intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:35381 ! monosaccharide relationship: has_primary_input CHEBI:35381 ! monosaccharide +[Term] +id: GO:0046390 +name: ribose phosphate biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of ribose phosphate, any phosphorylated ribose sugar." [GOC:ai] +synonym: "ribose phosphate anabolism" EXACT [] +synonym: "ribose phosphate biosynthesis" EXACT [] +synonym: "ribose phosphate formation" EXACT [] +synonym: "ribose phosphate synthesis" EXACT [] +is_a: GO:0019693 ! ribose phosphate metabolic process +is_a: GO:0090407 ! organophosphate biosynthetic process +is_a: GO:1901137 ! carbohydrate derivative biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26562 ! ribose phosphate +relationship: has_primary_output CHEBI:26562 ! ribose phosphate + [Term] id: GO:0046394 name: carboxylic acid biosynthetic process @@ -78661,6 +81945,7 @@ xref: Wikipedia:Stem_cell_differentiation is_a: GO:0030154 ! cell differentiation intersection_of: GO:0030154 ! cell differentiation intersection_of: results_in_acquisition_of_features_of CL:0000034 ! stem cell +relationship: never_in_taxon NCBITaxon:4751 ! Fungi relationship: results_in_acquisition_of_features_of CL:0000034 ! stem cell [Term] @@ -79765,8 +83050,8 @@ name: regulation of catalytic activity namespace: biological_process alt_id: GO:0048552 def: "Any process that modulates the activity of an enzyme." [GOC:ai, GOC:ebc, GOC:vw] +subset: gocheck_do_not_annotate subset: goslim_chembl -subset: term_scheduled_for_obsoletion synonym: "regulation of enzyme activity" EXACT [] synonym: "regulation of metalloenzyme activity" NARROW [] is_a: GO:0065009 ! regulation of molecular function @@ -81260,7 +84545,7 @@ id: GO:0051098 name: regulation of binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0065009 ! regulation of molecular function intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0005488 ! binding @@ -81271,7 +84556,7 @@ id: GO:0051099 name: positive regulation of binding namespace: biological_process def: "Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of binding" NARROW [] synonym: "stimulation of binding" NARROW [] synonym: "up regulation of binding" EXACT [] @@ -81288,7 +84573,7 @@ id: GO:0051100 name: negative regulation of binding namespace: biological_process def: "Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of binding" EXACT [] synonym: "down-regulation of binding" EXACT [] synonym: "downregulation of binding" EXACT [] @@ -81304,7 +84589,7 @@ id: GO:0051101 name: regulation of DNA binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid)." [GOC:ai, GOC:dph, GOC:tb] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0003677 ! DNA binding @@ -82031,7 +85316,7 @@ id: GO:0051336 name: regulation of hydrolase activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3." [GOC:ai] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "hydrolase regulator" EXACT [] is_a: GO:0050790 ! regulation of catalytic activity intersection_of: GO:0065007 ! biological regulation @@ -82044,8 +85329,8 @@ name: regulation of transferase activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [GOC:ai] comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_annotate subset: gocheck_do_not_manually_annotate -subset: term_scheduled_for_obsoletion synonym: "transferase regulator" EXACT [] is_a: GO:0050790 ! regulation of catalytic activity intersection_of: GO:0065007 ! biological regulation @@ -82057,7 +85342,7 @@ id: GO:0051340 name: regulation of ligase activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of ligase activity, the catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate. Ligase is the systematic name for any enzyme of EC class 6." [GOC:ai] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "ligase regulator" EXACT [] is_a: GO:0050790 ! regulation of catalytic activity intersection_of: GO:0065007 ! biological regulation @@ -82069,7 +85354,7 @@ id: GO:0051345 name: positive regulation of hydrolase activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds." [GOC:ai] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of hydrolase activity" NARROW [] synonym: "hydrolase activator" EXACT [] synonym: "stimulation of hydrolase activity" NARROW [] @@ -82087,7 +85372,7 @@ id: GO:0051346 name: negative regulation of hydrolase activity namespace: biological_process def: "Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds." [GOC:ai] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of hydrolase activity" EXACT [] synonym: "down-regulation of hydrolase activity" EXACT [] synonym: "downregulation of hydrolase activity" EXACT [] @@ -82105,8 +85390,8 @@ name: positive regulation of transferase activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor." [GOC:ai] comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_annotate subset: gocheck_do_not_manually_annotate -subset: term_scheduled_for_obsoletion synonym: "activation of transferase activity" NARROW [] synonym: "stimulation of transferase activity" NARROW [] synonym: "transferase activator" EXACT [] @@ -82125,8 +85410,8 @@ name: negative regulation of transferase activity namespace: biological_process def: "Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor." [GOC:ai] comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_annotate subset: gocheck_do_not_manually_annotate -subset: term_scheduled_for_obsoletion synonym: "down regulation of transferase activity" EXACT [] synonym: "down-regulation of transferase activity" EXACT [] synonym: "downregulation of transferase activity" EXACT [] @@ -82143,7 +85428,7 @@ id: GO:0051351 name: positive regulation of ligase activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of ligase activity, the catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate." [GOC:ai] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of ligase activity" NARROW [] synonym: "ligase activator" EXACT [] synonym: "stimulation of ligase activity" NARROW [] @@ -82161,7 +85446,7 @@ id: GO:0051352 name: negative regulation of ligase activity namespace: biological_process def: "Any process that stops or reduces the rate of ligase activity, the catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate." [GOC:ai] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of ligase activity" EXACT [] synonym: "down-regulation of ligase activity" EXACT [] synonym: "downregulation of ligase activity" EXACT [] @@ -82518,6 +85803,16 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0007010 ! cytoskeleton organization relationship: positively_regulates GO:0007010 ! cytoskeleton organization +[Term] +id: GO:0051503 +name: adenine nucleotide transport +namespace: biological_process +def: "The directed movement of adenine nucleotides, ATP, ADP, and/or AMP, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] +is_a: GO:0015865 ! purine nucleotide transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:61293 ! adenyl nucleotide +relationship: has_primary_input CHEBI:61293 ! adenyl nucleotide + [Term] id: GO:0051546 name: keratinocyte migration @@ -83788,20 +87083,6 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: negatively_regulates GO:0007059 ! chromosome segregation relationship: negatively_regulates GO:0007059 ! chromosome segregation -[Term] -id: GO:0052547 -name: regulation of peptidase activity -namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins." [GOC:ai] -subset: term_scheduled_for_obsoletion -synonym: "peptidase regulator activity" RELATED [] -is_a: GO:0030162 ! regulation of proteolysis -is_a: GO:0051336 ! regulation of hydrolase activity -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0008233 ! peptidase activity -relationship: regulates GO:0006508 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! proteolysis -relationship: regulates GO:0008233 ! peptidase activity - [Term] id: GO:0052803 name: imidazole-containing compound metabolic process @@ -85143,6 +88424,41 @@ intersection_of: results_in_development_of UBERON:0005870 ! olfactory pit relationship: part_of GO:0043584 ! nose development relationship: results_in_development_of UBERON:0005870 ! olfactory pit +[Term] +id: GO:0060167 +name: regulation of adenosine receptor signaling pathway +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands." [GOC:dph] +synonym: "regulation of adenosine receptor signalling pathway" EXACT [GOC:mah] +is_a: GO:0008277 ! regulation of G protein-coupled receptor signaling pathway +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway +relationship: regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway + +[Term] +id: GO:0060168 +name: positive regulation of adenosine receptor signaling pathway +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands." [GOC:dph] +synonym: "positive regulation of adenosine receptor signalling pathway" EXACT [GOC:mah] +is_a: GO:0045745 ! positive regulation of G protein-coupled receptor signaling pathway +is_a: GO:0060167 ! regulation of adenosine receptor signaling pathway +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway +relationship: positively_regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway + +[Term] +id: GO:0060169 +name: negative regulation of adenosine receptor signaling pathway +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands." [GOC:dph] +synonym: "negative regulation of adenosine receptor signalling pathway" EXACT [GOC:mah] +is_a: GO:0045744 ! negative regulation of G protein-coupled receptor signaling pathway +is_a: GO:0060167 ! regulation of adenosine receptor signaling pathway +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway +relationship: negatively_regulates GO:0001973 ! G protein-coupled adenosine receptor signaling pathway + [Term] id: GO:0060170 name: ciliary membrane @@ -89716,7 +93032,7 @@ id: GO:0061097 name: regulation of protein tyrosine kinase activity namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of protein tyrosine kinase activity." [GOC:dph, GOC:tb] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0045859 ! regulation of protein kinase activity is_a: GO:0050730 ! regulation of peptidyl-tyrosine phosphorylation intersection_of: GO:0065007 ! biological regulation @@ -89731,7 +93047,7 @@ id: GO:0061098 name: positive regulation of protein tyrosine kinase activity namespace: biological_process def: "Any process that increases the rate, frequency, or extent of protein tyrosine kinase activity." [GOC:dph, GOC:tb] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0045860 ! positive regulation of protein kinase activity is_a: GO:0050731 ! positive regulation of peptidyl-tyrosine phosphorylation is_a: GO:0061097 ! regulation of protein tyrosine kinase activity @@ -89746,7 +93062,7 @@ id: GO:0061099 name: negative regulation of protein tyrosine kinase activity namespace: biological_process def: "Any process that decreases the rate, frequency, or extent of protein tyrosine kinase activity." [GOC:dph, GOC:tb] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0006469 ! negative regulation of protein kinase activity is_a: GO:0050732 ! negative regulation of peptidyl-tyrosine phosphorylation is_a: GO:0061097 ! regulation of protein tyrosine kinase activity @@ -92200,8 +95516,8 @@ creation_date: 2014-05-15T09:12:24Z id: GO:0061650 name: ubiquitin-like protein conjugating enzyme activity namespace: molecular_function -def: "Isoenergetic transfer of a ubiquitin-like protein (ULP) from one protein to another via the reaction X-SCP + Y -> Y-SCP + X, where both the X-SCP and Y-SCP linkages are thioester bonds between the C-terminal amino acid of SCP and a sulfhydryl side group of a cysteine residue." [GOC:dph] -synonym: "E2" RELATED [] +def: "Isoenergetic transfer of a ubiquitin-like protein (ULP) from one protein to another via the reaction X-SCP + Y = Y-SCP + X, where both the X-SCP and Y-SCP linkages are thioester bonds between the C-terminal amino acid of SCP and a sulfhydryl side group of a cysteine residue." [GOC:dph] +synonym: "E2" BROAD [] synonym: "small conjugating protein conjugating enzyme activity" EXACT [GOC:dph] is_a: GO:0019787 ! ubiquitin-like protein transferase activity created_by: dph @@ -92211,8 +95527,8 @@ creation_date: 2014-11-06T13:15:27Z id: GO:0061651 name: Atg12 conjugating enzyme activity namespace: molecular_function -def: "Isoenergetic transfer of Atg12 from one protein to another via the reaction X-Atg12 + Y -> Y-Atg12 + X, where both the X-Atg12 and Y-Atg12 linkages are thioester bonds between the C-terminal amino acid of Atg12 and a sulfhydryl side group of a cysteine residue." [GOC:dph] -synonym: "E2" RELATED [GOC:dph] +def: "Isoenergetic transfer of Atg12 from one protein to another via the reaction X-Atg12 + Y = Y-Atg12 + X, where both the X-Atg12 and Y-Atg12 linkages are thioester bonds between the C-terminal amino acid of Atg12 and a sulfhydryl side group of a cysteine residue." [GOC:dph] +synonym: "E2" BROAD [GOC:dph] is_a: GO:0019777 ! Atg12 transferase activity is_a: GO:0061650 ! ubiquitin-like protein conjugating enzyme activity created_by: dph @@ -92222,7 +95538,7 @@ creation_date: 2014-11-06T13:17:36Z id: GO:0061659 name: ubiquitin-like protein ligase activity namespace: molecular_function -def: "Catalysis of the transfer of a ubiquitin-like protein (ULP) to a substrate protein via the reaction X-ULP + S --> X + S-ULP, where X is either an E2 or E3 enzyme, the X-ULP linkage is a thioester bond, and the S-ULP linkage is an isopeptide bond between the C-terminal glycine of ULP and the epsilon-amino group of lysine residues in the substrate." [GOC:dph] +def: "Catalysis of the transfer of a ubiquitin-like protein (ULP) to a substrate protein via the reaction X-ULP + S = X + S-ULP, where X is either an E2 or E3 enzyme, the X-ULP linkage is a thioester bond, and the S-ULP linkage is an isopeptide bond between the C-terminal glycine of ULP and the epsilon-amino group of lysine residues in the substrate." [GOC:dph] synonym: "E3" RELATED [GOC:dph] synonym: "small conjugating protein ligase activity" EXACT [GOC:dph] is_a: GO:0019787 ! ubiquitin-like protein transferase activity @@ -92233,8 +95549,8 @@ creation_date: 2014-11-06T13:46:23Z id: GO:0061660 name: Atg12 ligase activity namespace: molecular_function -def: "Catalysis of the transfer of Atg12 to a substrate protein via the reaction X-Atg12 + S --> X + S-Atg12, where X is either an E2 or E3 enzyme, the X-Atg12 linkage is a thioester bond, and the S-Atg12 linkage is an isopeptide bond between the C-terminal amino acid of Atg12 and the epsilon-amino group of lysine residues in the substrate." [GOC:dph] -synonym: "E3" RELATED [GOC:dph] +def: "Catalysis of the transfer of Atg12 to a substrate protein via the reaction X-Atg12 + S = X + S-Atg12, where X is either an E2 or E3 enzyme, the X-Atg12 linkage is a thioester bond, and the S-Atg12 linkage is an isopeptide bond between the C-terminal amino acid of Atg12 and the epsilon-amino group of lysine residues in the substrate." [GOC:dph] +synonym: "E3" BROAD [GOC:dph] is_a: GO:0019777 ! Atg12 transferase activity is_a: GO:0061659 ! ubiquitin-like protein ligase activity created_by: dph @@ -92325,7 +95641,7 @@ creation_date: 2015-09-14T14:10:24Z id: GO:0061792 name: secretory granule maturation namespace: biological_process -def: "Steps required to transform an immature secretory vesicle into a mature secretory vesicle. Typically proceeds through homotypic membrane fusion and membrane remodelling." [GOC:bf, GOC:dph, GOC:PARL, PMID:16618809] +def: "Steps required to transform an immature secretory vesicle into a mature secretory vesicle. Typically proceeds through homotypic membrane fusion and membrane remodeling." [GOC:bf, GOC:dph, GOC:PARL, PMID:16618809] is_a: GO:0021700 ! developmental maturation is_a: GO:0033363 ! secretory granule organization intersection_of: GO:0021700 ! developmental maturation @@ -92531,6 +95847,19 @@ is_a: GO:0009987 ! cellular process created_by: dph creation_date: 2017-07-13T19:42:14Z +[Term] +id: GO:0061934 +name: regulation of adenine biosynthetic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of an adenine biosynthetic process." [PMID:19933844] +is_a: GO:0006141 ! regulation of purine nucleobase metabolic process +is_a: GO:0031326 ! regulation of cellular biosynthetic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0046084 ! adenine biosynthetic process +relationship: regulates GO:0046084 ! adenine biosynthetic process +created_by: dph +creation_date: 2017-09-05T14:58:46Z + [Term] id: GO:0061938 name: protein localization to somatodendritic compartment @@ -92916,7 +96245,6 @@ def: "Any process that modulates the frequency, rate or extent of a molecular fu subset: gocheck_do_not_annotate subset: goslim_pir subset: goslim_plant -subset: term_scheduled_for_obsoletion synonym: "regulation of a molecular function" EXACT [] is_a: GO:0065007 ! biological regulation intersection_of: GO:0065007 ! biological regulation @@ -94462,6 +97790,21 @@ relationship: has_input CHEBI:22315 ! alkaloid created_by: mah creation_date: 2009-12-10T04:50:58Z +[Term] +id: GO:0071318 +name: cellular response to ATP +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus." [GOC:mah] +synonym: "cellular response to adenosine 5'-triphosphate" EXACT [GOC:mah] +synonym: "cellular response to adenosine triphosphate" EXACT [GOC:mah] +is_a: GO:0033198 ! response to ATP +is_a: GO:0070887 ! cellular response to chemical stimulus +intersection_of: GO:0070887 ! cellular response to chemical stimulus +intersection_of: has_input CHEBI:30616 ! ATP(4-) +relationship: has_input CHEBI:30616 ! ATP(4-) +created_by: mah +creation_date: 2009-12-10T05:09:47Z + [Term] id: GO:0071322 name: cellular response to carbohydrate stimulus @@ -95610,7 +98953,7 @@ id: GO:0071900 name: regulation of protein serine/threonine kinase activity namespace: biological_process def: "Any process that modulates the rate, frequency, or extent of protein serine/threonine kinase activity." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0045859 ! regulation of protein kinase activity intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0004674 ! protein serine/threonine kinase activity @@ -95623,7 +98966,7 @@ id: GO:0071901 name: negative regulation of protein serine/threonine kinase activity namespace: biological_process def: "Any process that decreases the rate, frequency, or extent of protein serine/threonine kinase activity." [GOC:BHF, GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0006469 ! negative regulation of protein kinase activity is_a: GO:0071900 ! regulation of protein serine/threonine kinase activity intersection_of: GO:0065007 ! biological regulation @@ -95637,7 +98980,7 @@ id: GO:0071902 name: positive regulation of protein serine/threonine kinase activity namespace: biological_process def: "Any process that increases the rate, frequency, or extent of protein serine/threonine kinase activity." [GOC:mah] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0045860 ! positive regulation of protein kinase activity is_a: GO:0071900 ! regulation of protein serine/threonine kinase activity intersection_of: GO:0065007 ! biological regulation @@ -98709,6 +102052,85 @@ relationship: results_in_development_of UBERON:0001343 ! seminiferous tubule of created_by: mah creation_date: 2011-01-04T12:50:36Z +[Term] +id: GO:0072521 +name: purine-containing compound metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof." [GOC:mah] +synonym: "purine and derivative metabolic process" EXACT [] +synonym: "purine-containing compound metabolism" EXACT [GOC:mah] +is_a: GO:0006725 ! cellular aromatic compound metabolic process +is_a: GO:0034641 ! cellular nitrogen compound metabolic process +is_a: GO:0046483 ! heterocycle metabolic process +is_a: GO:1901360 ! organic cyclic compound metabolic process +is_a: GO:1901564 ! organonitrogen compound metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:26401 ! purines +relationship: has_primary_input_or_output CHEBI:26401 ! purines +created_by: mah +creation_date: 2011-01-04T03:03:59Z + +[Term] +id: GO:0072522 +name: purine-containing compound biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof." [GOC:mah] +synonym: "purine and derivative biosynthetic process" EXACT [] +synonym: "purine-containing compound anabolism" EXACT [GOC:mah] +synonym: "purine-containing compound biosynthesis" EXACT [GOC:mah] +synonym: "purine-containing compound formation" EXACT [GOC:mah] +synonym: "purine-containing compound synthesis" EXACT [GOC:mah] +is_a: GO:0018130 ! heterocycle biosynthetic process +is_a: GO:0019438 ! aromatic compound biosynthetic process +is_a: GO:0044271 ! cellular nitrogen compound biosynthetic process +is_a: GO:0072521 ! purine-containing compound metabolic process +is_a: GO:1901362 ! organic cyclic compound biosynthetic process +is_a: GO:1901566 ! organonitrogen compound biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:26401 ! purines +relationship: has_primary_output CHEBI:26401 ! purines +created_by: mah +creation_date: 2011-01-04T03:15:29Z + +[Term] +id: GO:0072523 +name: purine-containing compound catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof." [GOC:mah] +synonym: "purine and derivative catabolic process" EXACT [] +synonym: "purine-containing compound breakdown" EXACT [GOC:mah] +synonym: "purine-containing compound catabolism" EXACT [GOC:mah] +synonym: "purine-containing compound degradation" EXACT [GOC:mah] +is_a: GO:0019439 ! aromatic compound catabolic process +is_a: GO:0044270 ! cellular nitrogen compound catabolic process +is_a: GO:0046700 ! heterocycle catabolic process +is_a: GO:0072521 ! purine-containing compound metabolic process +is_a: GO:1901361 ! organic cyclic compound catabolic process +is_a: GO:1901565 ! organonitrogen compound catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:26401 ! purines +relationship: has_primary_input CHEBI:26401 ! purines +created_by: mah +creation_date: 2011-01-04T03:17:20Z + +[Term] +id: GO:0072530 +name: purine-containing compound transmembrane transport +namespace: biological_process +def: "The process in which a purine-containing compound is transported across a membrane. A purine-containing compound is any compound that contains purine or a formal derivative thereof." [GOC:mah] +comment: Note that this term is not intended for use in annotating lateral movement within membranes. +synonym: "purine-containing compound membrane transport" EXACT [] +is_a: GO:0055085 ! transmembrane transport +is_a: GO:0071702 ! organic substance transport +is_a: GO:0071705 ! nitrogen compound transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:26401 ! purines +intersection_of: results_in_transport_across GO:0016020 ! membrane +relationship: has_primary_input CHEBI:26401 ! purines +relationship: results_in_transport_across GO:0016020 ! membrane +created_by: mah +creation_date: 2011-01-05T01:45:14Z + [Term] id: GO:0072537 name: fibroblast activation @@ -102482,8 +105904,8 @@ id: GO:0098962 name: regulation of postsynaptic neurotransmitter receptor activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity involved in synaptic transmission. Modulation may be via an effect on ligand affinity, or effector funtion such as ion selectivity or pore opening/closing in ionotropic receptors." [GOC:dos] +subset: gocheck_do_not_annotate subset: goslim_synapse -subset: term_scheduled_for_obsoletion is_a: GO:0031644 ! regulation of nervous system process is_a: GO:0050804 ! modulation of chemical synaptic transmission is_a: GO:0099601 ! regulation of neurotransmitter receptor activity @@ -103496,8 +106918,8 @@ id: GO:0099601 name: regulation of neurotransmitter receptor activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity. Modulation may be via an effect on ligand affinity, or effector funtion such as ion selectivity or pore opening/closing in ionotropic receptors." [GOC:dos] +subset: gocheck_do_not_annotate subset: goslim_synapse -subset: term_scheduled_for_obsoletion is_a: GO:0010469 ! regulation of signaling receptor activity intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0030594 ! neurotransmitter receptor activity @@ -104108,7 +107530,7 @@ id: GO:0110112 name: regulation of lipid transporter activity namespace: biological_process def: "Any process that modulates the frequency, rate, or extent of lipid transporter activity." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:27365390] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0032368 ! regulation of lipid transport is_a: GO:0032409 ! regulation of transporter activity intersection_of: GO:0065007 ! biological regulation @@ -104123,7 +107545,7 @@ id: GO:0110113 name: positive regulation of lipid transporter activity namespace: biological_process def: "Any process that increases the frequency, rate, or extent of lipid transporter activity." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:27365390] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0032370 ! positive regulation of lipid transport is_a: GO:0032411 ! positive regulation of transporter activity is_a: GO:0110112 ! regulation of lipid transporter activity @@ -104139,7 +107561,7 @@ id: GO:0110114 name: negative regulation of lipid transporter activity namespace: biological_process def: "Any process that decreases the frequency, rate, or extent of lipid transporter activity." [GOC:BHF, GOC:BHF_miRNA, GOC:rph, PMID:27365390] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0032369 ! negative regulation of lipid transport is_a: GO:0032410 ! negative regulation of transporter activity is_a: GO:0110112 ! regulation of lipid transporter activity @@ -105557,6 +108979,30 @@ relationship: regulates_levels_of CHEBI:24431 ! chemical entity created_by: pg creation_date: 2022-12-12T09:11:06Z +[Term] +id: GO:0140979 +name: intracellular nucleotide homeostasis +namespace: biological_process +def: "A homeostatic process involved in the maintenance of a steady state level of nucleotides within a cell." [PMID:23416111, PMID:34880500] +is_a: GO:0055082 ! intracellular chemical homeostasis +intersection_of: GO:0019725 ! cellular homeostasis +intersection_of: regulates_levels_of CHEBI:36976 ! nucleotide +relationship: regulates_levels_of CHEBI:36976 ! nucleotide +created_by: pg +creation_date: 2023-01-10T14:13:19Z + +[Term] +id: GO:0140980 +name: intracellular nucleoside homeostasis +namespace: biological_process +def: "A homeostatic process involved in the maintenance of a steady state level of nucleosides within a cell." [PMID:23416111, PMID:34880500] +is_a: GO:0055082 ! intracellular chemical homeostasis +intersection_of: GO:0019725 ! cellular homeostasis +intersection_of: regulates_levels_of CHEBI:33838 ! nucleoside +relationship: regulates_levels_of CHEBI:33838 ! nucleoside +created_by: pg +creation_date: 2023-01-10T14:14:42Z + [Term] id: GO:0150031 name: regulation of protein localization to lysosome @@ -106333,7 +109779,7 @@ id: GO:1900120 name: regulation of receptor binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "regulation of receptor ligand" NARROW [GOC:TermGenie] is_a: GO:0043393 ! regulation of protein binding intersection_of: GO:0065007 ! biological regulation @@ -106347,7 +109793,7 @@ id: GO:1900121 name: negative regulation of receptor binding namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of receptor binding" EXACT [GOC:TermGenie] synonym: "down regulation of receptor-associated protein activity" RELATED [GOC:TermGenie] synonym: "down-regulation of receptor binding" EXACT [GOC:TermGenie] @@ -106367,7 +109813,7 @@ id: GO:1900122 name: positive regulation of receptor binding namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of receptor binding" NARROW [GOC:TermGenie] synonym: "up regulation of receptor binding" EXACT [GOC:TermGenie] synonym: "upregulation of receptor binding" EXACT [GOC:TermGenie] @@ -106479,7 +109925,7 @@ id: GO:1900130 name: regulation of lipid binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of lipid binding." [GOC:pm, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0008289 ! lipid binding @@ -106492,7 +109938,7 @@ id: GO:1900131 name: negative regulation of lipid binding namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of lipid binding." [GOC:pm, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of lipid binding" EXACT [GOC:TermGenie] synonym: "down-regulation of lipid binding" EXACT [GOC:TermGenie] synonym: "downregulation of lipid binding" EXACT [GOC:TermGenie] @@ -106510,7 +109956,7 @@ id: GO:1900132 name: positive regulation of lipid binding namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of lipid binding." [GOC:pm, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of lipid binding" NARROW [GOC:TermGenie] synonym: "up regulation of lipid binding" EXACT [GOC:TermGenie] synonym: "up-regulation of lipid binding" EXACT [GOC:TermGenie] @@ -107490,6 +110936,99 @@ relationship: positively_regulates GO:0002213 ! defense response to insect created_by: dhl creation_date: 2012-04-12T04:44:10Z +[Term] +id: GO:1900371 +name: regulation of purine nucleotide biosynthetic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of purine nucleotide biosynthetic processes." [GOC:go_curators, GOC:TermGenie] +synonym: "regulation of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "regulation of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "regulation of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "regulation of purine nucleotide synthesis" EXACT [GOC:TermGenie] +is_a: GO:0030808 ! regulation of nucleotide biosynthetic process +is_a: GO:1900542 ! regulation of purine nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0006164 ! purine nucleotide biosynthetic process +relationship: regulates GO:0006164 ! purine nucleotide biosynthetic process +created_by: krc +creation_date: 2012-04-17T12:32:07Z + +[Term] +id: GO:1900372 +name: negative regulation of purine nucleotide biosynthetic process +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of purine nucleotide biosynthetic processes." [GOC:go_curators, GOC:TermGenie] +synonym: "down regulation of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "down regulation of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "down regulation of purine nucleotide biosynthetic process" EXACT [GOC:TermGenie] +synonym: "down regulation of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "down regulation of purine nucleotide synthesis" EXACT [GOC:TermGenie] +synonym: "down-regulation of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "down-regulation of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "down-regulation of purine nucleotide biosynthetic process" EXACT [GOC:TermGenie] +synonym: "down-regulation of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "down-regulation of purine nucleotide synthesis" EXACT [GOC:TermGenie] +synonym: "downregulation of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "downregulation of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "downregulation of purine nucleotide biosynthetic process" EXACT [GOC:TermGenie] +synonym: "downregulation of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "downregulation of purine nucleotide synthesis" EXACT [GOC:TermGenie] +synonym: "inhibition of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "inhibition of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "inhibition of purine nucleotide biosynthetic process" NARROW [GOC:TermGenie] +synonym: "inhibition of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "inhibition of purine nucleotide synthesis" EXACT [GOC:TermGenie] +synonym: "negative regulation of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "negative regulation of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "negative regulation of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "negative regulation of purine nucleotide synthesis" EXACT [GOC:TermGenie] +is_a: GO:0030809 ! negative regulation of nucleotide biosynthetic process +is_a: GO:1900371 ! regulation of purine nucleotide biosynthetic process +is_a: GO:1900543 ! negative regulation of purine nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0006164 ! purine nucleotide biosynthetic process +relationship: negatively_regulates GO:0006164 ! purine nucleotide biosynthetic process +created_by: krc +creation_date: 2012-04-17T12:32:27Z + +[Term] +id: GO:1900373 +name: positive regulation of purine nucleotide biosynthetic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of purine nucleotide biosynthetic processes." [GOC:go_curators, GOC:TermGenie] +synonym: "activation of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "activation of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "activation of purine nucleotide biosynthetic process" NARROW [GOC:TermGenie] +synonym: "activation of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "activation of purine nucleotide synthesis" EXACT [GOC:TermGenie] +synonym: "positive regulation of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "positive regulation of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "positive regulation of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "positive regulation of purine nucleotide synthesis" EXACT [GOC:TermGenie] +synonym: "up regulation of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "up regulation of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "up regulation of purine nucleotide biosynthetic process" EXACT [GOC:TermGenie] +synonym: "up regulation of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "up regulation of purine nucleotide synthesis" EXACT [GOC:TermGenie] +synonym: "up-regulation of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "up-regulation of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "up-regulation of purine nucleotide biosynthetic process" EXACT [GOC:TermGenie] +synonym: "up-regulation of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "up-regulation of purine nucleotide synthesis" EXACT [GOC:TermGenie] +synonym: "upregulation of purine nucleotide anabolism" EXACT [GOC:TermGenie] +synonym: "upregulation of purine nucleotide biosynthesis" EXACT [GOC:TermGenie] +synonym: "upregulation of purine nucleotide biosynthetic process" EXACT [GOC:TermGenie] +synonym: "upregulation of purine nucleotide formation" EXACT [GOC:TermGenie] +synonym: "upregulation of purine nucleotide synthesis" EXACT [GOC:TermGenie] +is_a: GO:0030810 ! positive regulation of nucleotide biosynthetic process +is_a: GO:1900371 ! regulation of purine nucleotide biosynthetic process +is_a: GO:1900544 ! positive regulation of purine nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0006164 ! purine nucleotide biosynthetic process +relationship: positively_regulates GO:0006164 ! purine nucleotide biosynthetic process +created_by: krc +creation_date: 2012-04-17T12:32:37Z + [Term] id: GO:1900376 name: regulation of secondary metabolite biosynthetic process @@ -107781,6 +111320,85 @@ relationship: positively_regulates GO:0007215 ! glutamate receptor signaling pat created_by: rl creation_date: 2012-04-27T03:46:03Z +[Term] +id: GO:1900542 +name: regulation of purine nucleotide metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of purine nucleotide metabolic process." [GOC:TermGenie] +synonym: "regulation of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "regulation of purine metabolism" NARROW [GOC:TermGenie] +synonym: "regulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] +is_a: GO:0006140 ! regulation of nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0006163 ! purine nucleotide metabolic process +relationship: regulates GO:0006163 ! purine nucleotide metabolic process +created_by: krc +creation_date: 2012-05-11T05:43:15Z + +[Term] +id: GO:1900543 +name: negative regulation of purine nucleotide metabolic process +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of purine nucleotide metabolic process." [GOC:TermGenie] +synonym: "down regulation of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "down regulation of purine metabolism" NARROW [GOC:TermGenie] +synonym: "down regulation of purine nucleotide metabolic process" EXACT [GOC:TermGenie] +synonym: "down regulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] +synonym: "down-regulation of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "down-regulation of purine metabolism" NARROW [GOC:TermGenie] +synonym: "down-regulation of purine nucleotide metabolic process" EXACT [GOC:TermGenie] +synonym: "down-regulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] +synonym: "downregulation of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "downregulation of purine metabolism" NARROW [GOC:TermGenie] +synonym: "downregulation of purine nucleotide metabolic process" EXACT [GOC:TermGenie] +synonym: "downregulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] +synonym: "inhibition of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "inhibition of purine metabolism" NARROW [GOC:TermGenie] +synonym: "inhibition of purine nucleotide metabolic process" NARROW [GOC:TermGenie] +synonym: "inhibition of purine nucleotide metabolism" NARROW [GOC:TermGenie] +synonym: "negative regulation of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "negative regulation of purine metabolism" NARROW [GOC:TermGenie] +synonym: "negative regulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] +is_a: GO:0045980 ! negative regulation of nucleotide metabolic process +is_a: GO:1900542 ! regulation of purine nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0006163 ! purine nucleotide metabolic process +relationship: negatively_regulates GO:0006163 ! purine nucleotide metabolic process +created_by: krc +creation_date: 2012-05-11T05:44:21Z + +[Term] +id: GO:1900544 +name: positive regulation of purine nucleotide metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of purine nucleotide metabolic process." [GOC:TermGenie] +synonym: "activation of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "activation of purine metabolism" NARROW [GOC:TermGenie] +synonym: "activation of purine nucleotide metabolic process" NARROW [GOC:TermGenie] +synonym: "activation of purine nucleotide metabolism" NARROW [GOC:TermGenie] +synonym: "positive regulation of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "positive regulation of purine metabolism" NARROW [GOC:TermGenie] +synonym: "positive regulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] +synonym: "up regulation of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "up regulation of purine metabolism" NARROW [GOC:TermGenie] +synonym: "up regulation of purine nucleotide metabolic process" EXACT [GOC:TermGenie] +synonym: "up regulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] +synonym: "up-regulation of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "up-regulation of purine metabolism" NARROW [GOC:TermGenie] +synonym: "up-regulation of purine nucleotide metabolic process" EXACT [GOC:TermGenie] +synonym: "up-regulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] +synonym: "upregulation of purine metabolic process" NARROW [GOC:TermGenie] +synonym: "upregulation of purine metabolism" NARROW [GOC:TermGenie] +synonym: "upregulation of purine nucleotide metabolic process" EXACT [GOC:TermGenie] +synonym: "upregulation of purine nucleotide metabolism" EXACT [GOC:TermGenie] +is_a: GO:0045981 ! positive regulation of nucleotide metabolic process +is_a: GO:1900542 ! regulation of purine nucleotide metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0006163 ! purine nucleotide metabolic process +relationship: positively_regulates GO:0006163 ! purine nucleotide metabolic process +created_by: krc +creation_date: 2012-05-11T05:44:43Z + [Term] id: GO:1900619 name: acetate ester metabolic process @@ -107837,7 +111455,7 @@ id: GO:1901019 name: regulation of calcium ion transmembrane transporter activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of calcium ion transmembrane transporter activity." [GOC:BHF, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0032412 ! regulation of monoatomic ion transmembrane transporter activity is_a: GO:1903169 ! regulation of calcium ion transmembrane transport intersection_of: GO:0065007 ! biological regulation @@ -107852,7 +111470,7 @@ id: GO:1901020 name: negative regulation of calcium ion transmembrane transporter activity namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion transmembrane transporter activity." [GOC:BHF, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of calcium ion transmembrane transporter activity" EXACT [GOC:TermGenie] synonym: "down-regulation of calcium ion transmembrane transporter activity" EXACT [GOC:TermGenie] synonym: "downregulation of calcium ion transmembrane transporter activity" EXACT [GOC:TermGenie] @@ -107872,7 +111490,7 @@ id: GO:1901021 name: positive regulation of calcium ion transmembrane transporter activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of calcium ion transmembrane transporter activity." [GOC:BHF, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of calcium ion transmembrane transporter activity" NARROW [GOC:TermGenie] synonym: "up regulation of calcium ion transmembrane transporter activity" EXACT [GOC:TermGenie] synonym: "up-regulation of calcium ion transmembrane transporter activity" EXACT [GOC:TermGenie] @@ -108621,6 +112239,54 @@ relationship: has_primary_input CHEBI:63299 ! carbohydrate derivative created_by: bf creation_date: 2012-08-16T14:51:22Z +[Term] +id: GO:1901265 +name: nucleoside phosphate binding +namespace: molecular_function +def: "Binding to nucleoside phosphate." [GOC:TermGenie] +is_a: GO:0097159 ! organic cyclic compound binding +is_a: GO:1901363 ! heterocyclic compound binding +intersection_of: GO:0005488 ! binding +intersection_of: has_input CHEBI:25608 ! nucleoside phosphate +relationship: has_input CHEBI:25608 ! nucleoside phosphate +created_by: bf +creation_date: 2012-08-17T12:59:58Z + +[Term] +id: GO:1901292 +name: nucleoside phosphate catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of a nucleoside phosphate." [GOC:TermGenie] +synonym: "nucleoside phosphate breakdown" EXACT [GOC:TermGenie] +synonym: "nucleoside phosphate catabolism" EXACT [GOC:TermGenie] +synonym: "nucleoside phosphate degradation" EXACT [GOC:TermGenie] +is_a: GO:0006753 ! nucleoside phosphate metabolic process +is_a: GO:0034655 ! nucleobase-containing compound catabolic process +is_a: GO:0046434 ! organophosphate catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:25608 ! nucleoside phosphate +relationship: has_primary_input CHEBI:25608 ! nucleoside phosphate +created_by: bf +creation_date: 2012-08-20T12:33:25Z + +[Term] +id: GO:1901293 +name: nucleoside phosphate biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of a nucleoside phosphate." [GOC:TermGenie] +synonym: "nucleoside phosphate anabolism" EXACT [GOC:TermGenie] +synonym: "nucleoside phosphate biosynthesis" EXACT [GOC:TermGenie] +synonym: "nucleoside phosphate formation" EXACT [GOC:TermGenie] +synonym: "nucleoside phosphate synthesis" EXACT [GOC:TermGenie] +is_a: GO:0006753 ! nucleoside phosphate metabolic process +is_a: GO:0034654 ! nucleobase-containing compound biosynthetic process +is_a: GO:0090407 ! organophosphate biosynthetic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:25608 ! nucleoside phosphate +relationship: has_primary_output CHEBI:25608 ! nucleoside phosphate +created_by: bf +creation_date: 2012-08-20T12:33:45Z + [Term] id: GO:1901317 name: regulation of flagellated sperm motility @@ -110055,6 +113721,23 @@ relationship: positively_regulates GO:0001941 ! postsynaptic membrane organizati created_by: ans creation_date: 2012-11-15T11:40:24Z +[Term] +id: GO:1901642 +name: nucleoside transmembrane transport +namespace: biological_process +def: "The directed movement of nucleoside across a membrane." [GOC:pr, GOC:TermGenie] +comment: Note that this term is not intended for use in annotating lateral movement within membranes. +synonym: "nucleoside membrane transport" EXACT [] +is_a: GO:0015858 ! nucleoside transport +is_a: GO:0055085 ! transmembrane transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:33838 ! nucleoside +intersection_of: results_in_transport_across GO:0016020 ! membrane +relationship: has_primary_input CHEBI:33838 ! nucleoside +relationship: results_in_transport_across GO:0016020 ! membrane +created_by: pr +creation_date: 2012-11-16T13:32:01Z + [Term] id: GO:1901645 name: regulation of synoviocyte proliferation @@ -110156,6 +113839,69 @@ relationship: has_input CHEBI:17087 ! ketone created_by: pr creation_date: 2012-11-20T10:55:51Z +[Term] +id: GO:1901657 +name: glycosyl compound metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving glycosyl compound." [GOC:pr, GOC:TermGenie] +synonym: "glycosyl compound metabolism" EXACT [GOC:TermGenie] +is_a: GO:1901135 ! carbohydrate derivative metabolic process +intersection_of: GO:0008152 ! metabolic process +intersection_of: has_primary_input_or_output CHEBI:63161 ! glycosyl compound +relationship: has_primary_input_or_output CHEBI:63161 ! glycosyl compound +created_by: pr +creation_date: 2012-11-20T14:24:07Z + +[Term] +id: GO:1901658 +name: glycosyl compound catabolic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the breakdown of glycosyl compound." [GOC:pr, GOC:TermGenie] +synonym: "glycosyl compound breakdown" EXACT [GOC:TermGenie] +synonym: "glycosyl compound catabolism" EXACT [GOC:TermGenie] +synonym: "glycosyl compound degradation" EXACT [GOC:TermGenie] +is_a: GO:1901136 ! carbohydrate derivative catabolic process +is_a: GO:1901657 ! glycosyl compound metabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:63161 ! glycosyl compound +relationship: has_primary_input CHEBI:63161 ! glycosyl compound +created_by: pr +creation_date: 2012-11-20T14:24:11Z + +[Term] +id: GO:1901659 +name: glycosyl compound biosynthetic process +namespace: biological_process +def: "The chemical reactions and pathways resulting in the formation of glycosyl compound." [GOC:pr, GOC:TermGenie] +synonym: "glycosyl compound anabolism" EXACT [GOC:TermGenie] +synonym: "glycosyl compound biosynthesis" EXACT [GOC:TermGenie] +synonym: "glycosyl compound formation" EXACT [GOC:TermGenie] +synonym: "glycosyl compound synthesis" EXACT [GOC:TermGenie] +is_a: GO:1901137 ! carbohydrate derivative biosynthetic process +is_a: GO:1901657 ! glycosyl compound metabolic process +intersection_of: GO:0009058 ! biosynthetic process +intersection_of: has_primary_output CHEBI:63161 ! glycosyl compound +relationship: has_primary_output CHEBI:63161 ! glycosyl compound +created_by: pr +creation_date: 2012-11-20T14:24:19Z + +[Term] +id: GO:1901679 +name: nucleotide transmembrane transport +namespace: biological_process +def: "The directed movement of nucleotide across a membrane." [GOC:pr, GOC:TermGenie] +comment: Note that this term is not intended for use in annotating lateral movement within membranes. +synonym: "nucleotide membrane transport" EXACT [] +is_a: GO:0006862 ! nucleotide transport +is_a: GO:0055085 ! transmembrane transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:36976 ! nucleotide +intersection_of: results_in_transport_across GO:0016020 ! membrane +relationship: has_primary_input CHEBI:36976 ! nucleotide +relationship: results_in_transport_across GO:0016020 ! membrane +created_by: pr +creation_date: 2012-11-22T15:43:23Z + [Term] id: GO:1901681 name: sulfur compound binding @@ -110649,7 +114395,7 @@ id: GO:1901876 name: regulation of calcium ion binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of calcium ion binding." [GOC:BHF, GOC:rl, GOC:TermGenie, PMID:16432188] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "regulation of calcium ion storage activity" RELATED [GOC:TermGenie] is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation @@ -110663,7 +114409,7 @@ id: GO:1901877 name: negative regulation of calcium ion binding namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion binding." [GOC:BHF, GOC:rl, GOC:TermGenie, PMID:16432188] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of calcium ion binding" EXACT [GOC:TermGenie] synonym: "down regulation of calcium ion storage activity" RELATED [GOC:TermGenie] synonym: "down-regulation of calcium ion binding" EXACT [GOC:TermGenie] @@ -110686,7 +114432,7 @@ id: GO:1901878 name: positive regulation of calcium ion binding namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of calcium ion binding." [GOC:BHF, GOC:rl, GOC:TermGenie, PMID:16432188] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of calcium ion binding" NARROW [GOC:TermGenie] synonym: "activation of calcium ion storage activity" RELATED [GOC:TermGenie] synonym: "positive regulation of calcium ion storage activity" RELATED [GOC:TermGenie] @@ -112694,6 +116440,46 @@ relationship: regulates GO:0007405 ! neuroblast proliferation created_by: rl creation_date: 2014-02-18T10:03:31Z +[Term] +id: GO:1902698 +name: pentose catabolic process to butyrate +namespace: biological_process +alt_id: GO:1990288 +def: "The chemical reactions and pathways resulting in the breakdown of pentose to butyrate." [GO_REF:0000093, GOC:mengo_curators, GOC:TermGenie, PMID:18727018, PMID:19539744] +synonym: "acidogenesis" BROAD [GOC:tt] +synonym: "pentose breakdown to butyrate" EXACT [GOC:TermGenie] +synonym: "pentose catabolism to butyrate" EXACT [GOC:TermGenie] +synonym: "pentose degradation to butyrate" EXACT [GOC:TermGenie] +is_a: GO:0019323 ! pentose catabolic process +is_a: GO:0019605 ! butyrate metabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:25901 ! pentose +intersection_of: has_primary_output CHEBI:17968 ! butyrate +relationship: has_primary_input CHEBI:25901 ! pentose +relationship: has_primary_output CHEBI:17968 ! butyrate +created_by: tb +creation_date: 2014-02-19T18:28:28Z + +[Term] +id: GO:1902699 +name: pentose catabolic process to acetate +namespace: biological_process +alt_id: GO:1990289 +def: "The chemical reactions and pathways resulting in the breakdown of pentose to acetate." [GO_REF:0000093, GOC:mengo_curators, GOC:TermGenie, PMID:18727018, PMID:19539744] +synonym: "acidogenesis" BROAD [GOC:tt] +synonym: "pentose breakdown to acetate" EXACT [GOC:TermGenie] +synonym: "pentose catabolism to acetate" EXACT [GOC:TermGenie] +synonym: "pentose degradation to acetate" EXACT [GOC:TermGenie] +is_a: GO:0006083 ! acetate metabolic process +is_a: GO:0019323 ! pentose catabolic process +intersection_of: GO:0009056 ! catabolic process +intersection_of: has_primary_input CHEBI:25901 ! pentose +intersection_of: has_primary_output CHEBI:30089 ! acetate +relationship: has_primary_input CHEBI:25901 ! pentose +relationship: has_primary_output CHEBI:30089 ! acetate +created_by: tb +creation_date: 2014-02-19T18:28:38Z + [Term] id: GO:1902710 name: GABA receptor complex @@ -116036,6 +119822,63 @@ relationship: positively_regulates GO:1903441 ! protein localization to ciliary created_by: krc creation_date: 2014-10-24T21:33:08Z +[Term] +id: GO:1903578 +name: regulation of ATP metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of ATP metabolic process." [GO_REF:0000058, GOC:TermGenie, PMID:20695849] +synonym: "regulation of ATP metabolism" EXACT [GOC:TermGenie] +is_a: GO:0051174 ! regulation of phosphorus metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0046034 ! ATP metabolic process +relationship: regulates GO:0046034 ! ATP metabolic process +created_by: sl +creation_date: 2014-10-30T19:04:24Z + +[Term] +id: GO:1903579 +name: negative regulation of ATP metabolic process +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of ATP metabolic process." [GO_REF:0000058, GOC:TermGenie, PMID:20695849] +synonym: "down regulation of ATP metabolic process" EXACT [GOC:TermGenie] +synonym: "down regulation of ATP metabolism" EXACT [GOC:TermGenie] +synonym: "down-regulation of ATP metabolic process" EXACT [GOC:TermGenie] +synonym: "down-regulation of ATP metabolism" EXACT [GOC:TermGenie] +synonym: "downregulation of ATP metabolic process" EXACT [GOC:TermGenie] +synonym: "downregulation of ATP metabolism" EXACT [GOC:TermGenie] +synonym: "inhibition of ATP metabolic process" NARROW [GOC:TermGenie] +synonym: "inhibition of ATP metabolism" NARROW [GOC:TermGenie] +synonym: "negative regulation of ATP metabolism" EXACT [GOC:TermGenie] +is_a: GO:0010563 ! negative regulation of phosphorus metabolic process +is_a: GO:1903578 ! regulation of ATP metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0046034 ! ATP metabolic process +relationship: negatively_regulates GO:0046034 ! ATP metabolic process +created_by: sl +creation_date: 2014-10-30T19:04:33Z + +[Term] +id: GO:1903580 +name: positive regulation of ATP metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of ATP metabolic process." [GO_REF:0000058, GOC:TermGenie, PMID:20695849] +synonym: "activation of ATP metabolic process" NARROW [GOC:TermGenie] +synonym: "activation of ATP metabolism" NARROW [GOC:TermGenie] +synonym: "positive regulation of ATP metabolism" EXACT [GOC:TermGenie] +synonym: "up regulation of ATP metabolic process" EXACT [GOC:TermGenie] +synonym: "up regulation of ATP metabolism" EXACT [GOC:TermGenie] +synonym: "up-regulation of ATP metabolic process" EXACT [GOC:TermGenie] +synonym: "up-regulation of ATP metabolism" EXACT [GOC:TermGenie] +synonym: "upregulation of ATP metabolic process" EXACT [GOC:TermGenie] +synonym: "upregulation of ATP metabolism" EXACT [GOC:TermGenie] +is_a: GO:0010562 ! positive regulation of phosphorus metabolic process +is_a: GO:1903578 ! regulation of ATP metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0046034 ! ATP metabolic process +relationship: positively_regulates GO:0046034 ! ATP metabolic process +created_by: sl +creation_date: 2014-10-30T19:04:42Z + [Term] id: GO:1903624 name: regulation of DNA catabolic process @@ -118266,7 +122109,7 @@ id: GO:1904254 name: regulation of iron ion transmembrane transporter activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of an iron transmembrane transporter activity." [GO_REF:0000059, GOC:BHF, GOC:kom, GOC:TermGenie, PMID:15514116] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "regulation of iron cation channel activity" EXACT [GOC:TermGenie] synonym: "regulation of iron channel activity" EXACT [] synonym: "regulation of iron-specific channel activity" EXACT [GOC:TermGenie] @@ -118284,7 +122127,7 @@ id: GO:1904255 name: negative regulation of iron ion transmembrane transporter activity namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of an iron transmembrane transporter activity." [GO_REF:0000059, GOC:BHF, GOC:kom, GOC:TermGenie, PMID:15514116] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of iron cation channel activity" EXACT [GOC:TermGenie] synonym: "down regulation of iron channel activity" EXACT [GOC:TermGenie] synonym: "down regulation of iron-specific channel activity" EXACT [GOC:TermGenie] @@ -118315,7 +122158,7 @@ id: GO:1904256 name: positive regulation of iron ion transmembrane transporter activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of an iron transmembrane transporter activity." [GO_REF:0000059, GOC:BHF, GOC:kom, GOC:TermGenie, PMID:15514116] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of iron cation channel activity" NARROW [GOC:TermGenie] synonym: "activation of iron channel activity" NARROW [GOC:TermGenie] synonym: "activation of iron-specific channel activity" NARROW [GOC:TermGenie] @@ -119244,7 +123087,7 @@ id: GO:1904526 name: regulation of microtubule binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of microtubule binding." [GO_REF:0000059, GOC:als, GOC:TermGenie, PMID:24520051] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "regulation of microtubule severing activity" RELATED [GOC:TermGenie] synonym: "regulation of microtubule/chromatin interaction" RELATED [GOC:TermGenie] is_a: GO:0043393 ! regulation of protein binding @@ -119259,7 +123102,7 @@ id: GO:1904527 name: negative regulation of microtubule binding namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of microtubule binding." [GO_REF:0000059, GOC:als, GOC:TermGenie, PMID:24520051] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of microtubule binding" EXACT [GOC:TermGenie] synonym: "down regulation of microtubule severing activity" RELATED [GOC:TermGenie] synonym: "down regulation of microtubule/chromatin interaction" RELATED [GOC:TermGenie] @@ -119287,7 +123130,7 @@ id: GO:1904528 name: positive regulation of microtubule binding namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of microtubule binding." [GO_REF:0000059, GOC:als, GOC:TermGenie, PMID:24520051] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of microtubule binding" NARROW [GOC:TermGenie] synonym: "activation of microtubule severing activity" RELATED [GOC:TermGenie] synonym: "activation of microtubule/chromatin interaction" RELATED [GOC:TermGenie] @@ -120699,7 +124542,7 @@ id: GO:1904793 name: regulation of euchromatin binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of euchromatin binding." [GO_REF:0000059, GOC:BHF, GOC:BHF_telomere, GOC:nc, GOC:TermGenie, PMID:22723415] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0035561 ! regulation of chromatin binding intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:1990188 ! euchromatin binding @@ -120712,7 +124555,7 @@ id: GO:1904794 name: negative regulation of euchromatin binding namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of euchromatin binding." [GO_REF:0000059, GOC:BHF, GOC:BHF_telomere, GOC:nc, GOC:TermGenie, PMID:22723415] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of euchromatin binding" EXACT [GOC:TermGenie] synonym: "down-regulation of euchromatin binding" EXACT [GOC:TermGenie] synonym: "downregulation of euchromatin binding" EXACT [GOC:TermGenie] @@ -120730,7 +124573,7 @@ id: GO:1904795 name: positive regulation of euchromatin binding namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of euchromatin binding." [GO_REF:0000059, GOC:BHF, GOC:BHF_telomere, GOC:nc, GOC:TermGenie, PMID:22723415] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of euchromatin binding" NARROW [GOC:TermGenie] synonym: "up regulation of euchromatin binding" EXACT [GOC:TermGenie] synonym: "up-regulation of euchromatin binding" EXACT [GOC:TermGenie] @@ -120798,6 +124641,21 @@ relationship: results_in_development_of UBERON:0002358 ! peritoneum created_by: dph creation_date: 2015-11-18T17:23:51Z +[Term] +id: GO:1904823 +name: purine nucleobase transmembrane transport +namespace: biological_process +def: "The process in which a purine nucleobase is transported across a membrane." [GO_REF:0000069, GOC:TermGenie] +is_a: GO:0006863 ! purine nucleobase transport +is_a: GO:0072530 ! purine-containing compound transmembrane transport +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input CHEBI:26386 ! purine nucleobase +intersection_of: results_in_transport_across GO:0016020 ! membrane +relationship: has_primary_input CHEBI:26386 ! purine nucleobase +relationship: results_in_transport_across GO:0016020 ! membrane +created_by: vw +creation_date: 2015-11-19T09:07:56Z + [Term] id: GO:1904829 name: regulation of aortic smooth muscle cell differentiation @@ -122318,7 +126176,7 @@ id: GO:1905214 name: regulation of RNA binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of RNA binding." [GO_REF:0000059, GOC:bf, GOC:PARL, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0051098 ! regulation of binding intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0003723 ! RNA binding @@ -122331,7 +126189,7 @@ id: GO:1905215 name: negative regulation of RNA binding namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of RNA binding." [GO_REF:0000059, GOC:bf, GOC:PARL, GOC:TermGenie] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "down regulation of RNA binding" EXACT [GOC:TermGenie] synonym: "down-regulation of RNA binding" EXACT [GOC:TermGenie] synonym: "downregulation of RNA binding" EXACT [GOC:TermGenie] @@ -122349,7 +126207,7 @@ id: GO:1905216 name: positive regulation of RNA binding namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of RNA binding." [GO_REF:0000059, GOC:bf, GOC:PARL, GOC:TermGenie, PMID:25116364] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "activation of RNA binding" NARROW [GOC:TermGenie] synonym: "up regulation of RNA binding" EXACT [GOC:TermGenie] synonym: "up-regulation of RNA binding" EXACT [GOC:TermGenie] @@ -123089,21 +126947,6 @@ relationship: results_in_movement_of CL:0000669 ! pericyte created_by: rph creation_date: 2016-08-05T12:01:48Z -[Term] -id: GO:1905368 -name: peptidase complex -namespace: cellular_component -def: "A protein complex which is capable of peptidase activity." [GO_REF:0000088, GOC:bhm, GOC:TermGenie, PMID:1689240] -comment: An example of this is PLAU in human (UniProt symbol P00749) in PMID:1689240 (inferred from direct assay). -synonym: "protease complex" EXACT [] -synonym: "tryptase complex" NARROW [] -is_a: GO:1902494 ! catalytic complex -intersection_of: GO:0032991 ! protein-containing complex -intersection_of: capable_of GO:0008233 ! peptidase activity -relationship: capable_of GO:0008233 ! peptidase activity -created_by: bhm -creation_date: 2016-08-16T12:49:36Z - [Term] id: GO:1905383 name: protein localization to presynapse @@ -127428,7 +131271,7 @@ id: GO:2000272 name: negative regulation of signaling receptor activity namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity." [GOC:obol] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "negative regulation of receptor activity" BROAD [] synonym: "negative regulation of signalling receptor activity" EXACT [] is_a: GO:0010469 ! regulation of signaling receptor activity @@ -127444,7 +131287,7 @@ id: GO:2000273 name: positive regulation of signaling receptor activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of signaling receptor activity." [GOC:obol] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "positive regulation of signalling receptor activity" EXACT [] is_a: GO:0010469 ! regulation of signaling receptor activity is_a: GO:0044093 ! positive regulation of molecular function @@ -128704,7 +132547,7 @@ id: GO:2000649 name: regulation of sodium ion transmembrane transporter activity namespace: biological_process def: "Any process that modulates the frequency, rate or extent of sodium ion transmembrane transporter activity." [GOC:obol] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "regulation of sodium transporter activity" EXACT [GOC:obol] is_a: GO:0032412 ! regulation of monoatomic ion transmembrane transporter activity is_a: GO:1902305 ! regulation of sodium ion transmembrane transport @@ -128720,7 +132563,7 @@ id: GO:2000650 name: negative regulation of sodium ion transmembrane transporter activity namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of sodium ion transmembrane transporter activity." [GOC:obol] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "negative regulation of sodium transporter activity" EXACT [GOC:obol] is_a: GO:0032413 ! negative regulation of ion transmembrane transporter activity is_a: GO:1902306 ! negative regulation of sodium ion transmembrane transport @@ -128737,7 +132580,7 @@ id: GO:2000651 name: positive regulation of sodium ion transmembrane transporter activity namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of sodium ion transmembrane transporter activity." [GOC:obol] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate synonym: "positive regulation of sodium transporter activity" EXACT [GOC:obol] is_a: GO:0032414 ! positive regulation of ion transmembrane transporter activity is_a: GO:1902307 ! positive regulation of sodium ion transmembrane transport @@ -128781,7 +132624,7 @@ id: GO:2000656 name: regulation of apolipoprotein binding namespace: biological_process def: "Any process that modulates the frequency, rate or extent of apolipoprotein binding." [GOC:BHF] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0043393 ! regulation of protein binding intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0034185 ! apolipoprotein binding @@ -128794,7 +132637,7 @@ id: GO:2000657 name: negative regulation of apolipoprotein binding namespace: biological_process def: "Any process that stops, prevents or reduces the frequency, rate or extent of apolipoprotein binding." [GOC:BHF] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0032091 ! negative regulation of protein binding is_a: GO:2000656 ! regulation of apolipoprotein binding intersection_of: GO:0065007 ! biological regulation @@ -128808,7 +132651,7 @@ id: GO:2000658 name: positive regulation of apolipoprotein binding namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of apolipoprotein binding." [GOC:BHF] -subset: term_scheduled_for_obsoletion +subset: gocheck_do_not_annotate is_a: GO:0032092 ! positive regulation of protein binding is_a: GO:2000656 ! regulation of apolipoprotein binding intersection_of: GO:0065007 ! biological regulation @@ -130296,6 +134139,62 @@ relationship: positively_regulates GO:0003097 ! renal water transport created_by: yaf creation_date: 2011-10-24T11:38:01Z +[Term] +id: GO:2001169 +name: regulation of ATP biosynthetic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of ATP biosynthetic process." [GOC:obol] +synonym: "regulation of ATP anabolism" EXACT [GOC:obol] +synonym: "regulation of ATP biosynthesis" EXACT [GOC:obol] +synonym: "regulation of ATP formation" EXACT [GOC:obol] +synonym: "regulation of ATP regeneration" RELATED [GOC:obol] +synonym: "regulation of ATP synthesis" EXACT [GOC:obol] +is_a: GO:0009889 ! regulation of biosynthetic process +is_a: GO:1903578 ! regulation of ATP metabolic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0006754 ! ATP biosynthetic process +relationship: regulates GO:0006754 ! ATP biosynthetic process +created_by: kmv +creation_date: 2011-10-26T03:18:03Z + +[Term] +id: GO:2001170 +name: negative regulation of ATP biosynthetic process +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of ATP biosynthetic process." [GOC:obol] +synonym: "negative regulation of ATP anabolism" EXACT [GOC:obol] +synonym: "negative regulation of ATP biosynthesis" EXACT [GOC:obol] +synonym: "negative regulation of ATP formation" EXACT [GOC:obol] +synonym: "negative regulation of ATP regeneration" RELATED [GOC:obol] +synonym: "negative regulation of ATP synthesis" EXACT [GOC:obol] +is_a: GO:0009890 ! negative regulation of biosynthetic process +is_a: GO:1903579 ! negative regulation of ATP metabolic process +is_a: GO:2001169 ! regulation of ATP biosynthetic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0006754 ! ATP biosynthetic process +relationship: negatively_regulates GO:0006754 ! ATP biosynthetic process +created_by: kmv +creation_date: 2011-10-26T03:18:13Z + +[Term] +id: GO:2001171 +name: positive regulation of ATP biosynthetic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of ATP biosynthetic process." [GOC:obol] +synonym: "positive regulation of ATP anabolism" EXACT [GOC:obol] +synonym: "positive regulation of ATP biosynthesis" EXACT [GOC:obol] +synonym: "positive regulation of ATP formation" EXACT [GOC:obol] +synonym: "positive regulation of ATP regeneration" RELATED [GOC:obol] +synonym: "positive regulation of ATP synthesis" EXACT [GOC:obol] +is_a: GO:0009891 ! positive regulation of biosynthetic process +is_a: GO:1903580 ! positive regulation of ATP metabolic process +is_a: GO:2001169 ! regulation of ATP biosynthetic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0006754 ! ATP biosynthetic process +relationship: positively_regulates GO:0006754 ! ATP biosynthetic process +created_by: kmv +creation_date: 2011-10-26T03:18:26Z + [Term] id: GO:2001198 name: regulation of dendritic cell differentiation @@ -131697,6 +135596,8 @@ xref: PMID:11760965 xref: PMID:12054223 xref: PMID:2112744 xref: PMID:270744 +xref: PMID:32628106 +xref: PMID:36748408 xref: PMID:7520741 xref: PMID:8123559 xref: PMID:8186100 @@ -131772,6 +135673,8 @@ xref: PMID:12054223 xref: PMID:2112744 xref: PMID:25527841 xref: PMID:270744 +xref: PMID:32628106 +xref: PMID:36748408 xref: PMID:8123559 xref: PMID:8590690 xref: PMID:9103655 @@ -133738,7 +137641,7 @@ id: NCBITaxon:7778 name: Elasmobranchii namespace: ncbi_taxonomy synonym: "elasmobranchs" EXACT genbank_common_name [] -synonym: "sharks and rays" RELATED blast_name [] +synonym: "sharks & rays" RELATED blast_name [] xref: GC_ID:1 is_a: NCBITaxon:7777 ! Chondrichthyes @@ -145247,6 +149150,7 @@ xref: HsapDv:0000012 xref: MmusDv:0000017 xref: XAO:1000006 is_a: UBERON:0000105 ! life cycle stage +relationship: dubious_for_taxon NCBITaxon:7955 ! Danio rerio relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000109 ! gastrula stage @@ -145267,7 +149171,7 @@ xref: Wikipedia:Organogenesis is_a: UBERON:0000105 ! life cycle stage relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0000068 ! embryo stage -relationship: preceded_by UBERON:0000110 ! neurula stage +relationship: preceded_by UBERON:0000110 {gci_relation="part_of", gci_filler="NCBITaxon:32523"} ! neurula stage relationship: simultaneous_with GO:0048513 ! animal organ development [Term] @@ -170943,6 +174847,7 @@ xref: Wikipedia:Lacrimal_bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010321 ! skeletal element of eye region is_a: UBERON:0015212 ! lateral structure relationship: contributes_to_morphology_of UBERON:0011156 ! facial skeleton relationship: dubious_for_taxon NCBITaxon:8292 {source="Wikipedia"} ! Amphibia @@ -170950,6 +174855,7 @@ relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! faci relationship: overlaps UBERON:0001697 {source="ZFA-modified"} ! orbit of skull relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0011156 ! facial skeleton +relationship: part_of UBERON:7500102 ! preorbital bone region relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] @@ -171058,6 +174964,7 @@ xref: Wikipedia:Jugal_bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008001 {source="FMA"} ! irregular bone is_a: UBERON:0008907 ! dermal bone +is_a: UBERON:0010321 ! skeletal element of eye region is_a: UBERON:0015212 ! lateral structure relationship: contributes_to_morphology_of UBERON:0011156 ! facial skeleton relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton @@ -171065,6 +174972,7 @@ relationship: overlaps UBERON:0001697 {source="ISBN:0073040584"} ! orbit of skul relationship: part_of UBERON:0001567 ! cheek relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0011156 ! facial skeleton +relationship: part_of UBERON:7500102 ! preorbital bone region relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] @@ -182220,6 +186128,8 @@ is_a: UBERON:0004573 ! systemic artery intersection_of: UBERON:0004573 ! systemic artery intersection_of: part_of UBERON:0004571 ! systemic arterial system intersection_of: supplies UBERON:0002048 ! lung +relationship: has_part UBERON:0004848 ! respiratory system arterial endothelium +relationship: has_part UBERON:0012416 ! respiratory system arterial smooth muscle relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0004571 ! systemic arterial system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -186595,6 +190505,9 @@ xref: UMLS:C0225653 {source="ncithesaurus:Lobar_Bronchus"} xref: Wikipedia:Secondary_bronchus is_a: UBERON:0035767 ! intrapulmonary bronchus relationship: distally_connected_to UBERON:0002184 ! segmental bronchus +relationship: has_part UBERON:0001956 ! cartilage of bronchus +relationship: has_part UBERON:0004242 ! bronchus smooth muscle +relationship: has_part UBERON:8410043 ! bronchus submucosal gland relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -186621,6 +190534,10 @@ xref: UMLS:C0444439 {source="ncithesaurus:Segmental_Bronchus"} xref: VHOG:0001446 xref: Wikipedia:Segmental_bronchus is_a: UBERON:0035767 ! intrapulmonary bronchus +relationship: has_part UBERON:0001956 ! cartilage of bronchus +relationship: has_part UBERON:0004242 ! bronchus smooth muscle +relationship: has_part UBERON:0004883 ! lung mesenchyme +relationship: has_part UBERON:8410043 ! bronchus submucosal gland relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -192700,6 +196617,7 @@ relationship: adjacent_to UBERON:0002244 ! premaxilla relationship: contributes_to_morphology_of UBERON:0001708 ! jaw skeleton relationship: develops_from UBERON:0010334 {source="EHDAA2"} ! maxillary process mesenchyme from neural crest relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton +relationship: overlaps UBERON:7500102 ! preorbital bone region relationship: part_of UBERON:0003113 {notes="facial series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0003277 {source="VHOG"} ! skeleton of upper jaw relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -210704,6 +214622,7 @@ def: "The fused, compact cephalic plates that comprise the head, excluding the e subset: efo_slim xref: BTO:0004711 xref: EFO:0001927 +xref: FBbt:00004482 xref: HAO:0000398 is_a: UBERON:6007284 ! insect region of integument relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -222247,8 +226166,8 @@ synonym: "field CA1 of hippocampus" RELATED [NeuroNames:183] synonym: "field CA1, Ammon's horn (Lorente de Ns)" RELATED [NeuroNames:183] synonym: "hippocampus CA1" EXACT [] synonym: "prosubiculum = distal ca1" EXACT [BIRNLEX:1197] -synonym: "regio i cornus ammonis" EXACT LATIN [FMA:74042, FMA:TA] -synonym: "regio i hippocampi proprii" EXACT LATIN [FMA:74042, FMA:TA] +synonym: "regio I cornus ammonis" EXACT LATIN [FMA:74042, FMA:TA] +synonym: "regio I hippocampi proprii" EXACT LATIN [FMA:74042, FMA:TA] synonym: "regio superior" EXACT [BIRNLEX:1197] synonym: "regio superior of the hippocampus" EXACT [FMA:74042] synonym: "region 1 of Ammon's horn" EXACT [] @@ -259183,7 +263102,7 @@ relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006481 name: Brodmann (1909) area 44 -def: "Brodmann area 44, or BA44, is part of the frontal cortex in the human brain. Situated just anterior to premotor cortex and on the lateral surface, inferior to BA9. This area is also known as pars opercularis (of the inferior frontal gyrus), and it refers to a subdivision of the cytoarchitecturally defined frontal region of cerebral cortex. In the human it corresponds approximately to the opercular part of inferior frontal gyrus (H). Thus, it is bounded caudally by the inferior precentral sulcus (H) and rostrally by the anterior ascending limb of lateral sulcus (H). It surrounds the diagonal sulcus (H). In the depth of the lateral sulcus it borders on the insula. Cytoarchitectonically it is bounded caudally and dorsally by the agranular frontal area 6, dorsally by the granular frontal area 9 and rostrally by the triangular area 45 (Brodmann-1909)." [Wikipedia:Brodmann_area_44] +def: "Broca's area is a region of the inferior frontal gyrus (in the dominant cerebral hemisphere, usually on the left side) that is composed of parts of Brodmanns' areas 44 and 45." [https://orcid.org/0000-0002-1572-1316] synonym: "area 44 of Brodmann" EXACT [FMA:68641] synonym: "area 44 of Brodmann-1909" EXACT [BIRNLEX:1776] synonym: "area opercularis" EXACT [BIRNLEX:1776] @@ -323137,6 +327056,7 @@ subset: pheno_slim synonym: "pulmonary lymphatic chain" EXACT [FMA:67999] synonym: "pulmonary lymphatic vasculature" RELATED [] xref: FMA:67999 +is_a: PR:000050567 ! protein-containing material entity is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision intersection_of: UBERON:0011216 ! organ system subdivision @@ -323154,10 +327074,12 @@ subset: human_reference_atlas synonym: "lymphatic vessel of lung" EXACT [] xref: FMA:234006 xref: SCTID:321862009 +is_a: PR:000050567 ! protein-containing material entity is_a: UBERON:0003456 ! respiratory system lymphatic vessel is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0002048 ! lung +relationship: has_part UBERON:0003529 ! respiratory system lymphatic vessel endothelium relationship: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0018226 ! pulmonary part of lymphatic system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -344294,6 +348216,8 @@ synonym: "anterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA synonym: "anterior segmental artery of left lung" EXACT [FMA:13279] synonym: "anterior segmental artery of left upper lobe" EXACT [FMA:13279] xref: FMA:13279 +is_a: UBERON:0001637 ! artery +relationship: part_of UBERON:0001652 ! left pulmonary artery [Term] id: UBERON:0039851 @@ -373129,7 +377053,6 @@ relationship: part_of UBERON:6001747 ! insect larval abdominal segment id: UBERON:6001789 name: obsolete insect histoblast comment: Obsoleted as this represents a cell type and therefore belongs to CL. -xref: FBbt:00001789 is_obsolete: true replaced_by: CL:0000373 @@ -373145,7 +377068,6 @@ relationship: part_of UBERON:6001747 ! insect larval abdominal segment id: UBERON:6001791 name: obsolete insect dorsal histoblast nest abdominal comment: Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. -xref: FBbt:00001791 is_obsolete: true consider: UBERON:6001790 @@ -373153,7 +377075,6 @@ consider: UBERON:6001790 id: UBERON:6001792 name: obsolete insect anterior dorsal histoblast nest abdominal comment: Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. -xref: FBbt:00001792 is_obsolete: true consider: UBERON:6001790 @@ -373161,7 +377082,6 @@ consider: UBERON:6001790 id: UBERON:6001809 name: obsolete insect posterior dorsal histoblast nest abdominal comment: Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. -xref: FBbt:00001809 is_obsolete: true consider: UBERON:6001790 @@ -375061,6 +378981,7 @@ id: UBERON:7500102 name: preorbital bone region def: "Part of the orbital plate formed by the jugal (part of the zygomatic), lacrimal (which is sometimes fused), sometimes nasal (typically in species with elongated rostra), and maxilla bones anterior to the orbit." [https://doi.org/10.1111/let.12011] is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0001062 ! anatomical entity property_value: dc-contributor https://orcid.org/0000-0001-8415-4848 relationship: part_of UBERON:0001697 ! orbit of skull @@ -378147,6 +382068,46 @@ def: "The region of the body adjacent to the pericardium and heart." [https://or is_a: UBERON:0009569 ! subdivision of trunk property_value: dc-contributor https://orcid.org/0000-0002-0819-0473 +[Term] +id: UBERON:8480062 +name: femoral head cartilage +def: "A hyaline articular cartilage that covers the head of femur. Provides cushioning, softness and low friction for the hip joint." [PMID:29262200, PMID:36292459] +is_a: UBERON:0004266 ! upper leg connective tissue +is_a: UBERON:0007391 ! pelvic appendage cartilage tissue +is_a: UBERON:0010996 ! articular cartilage of joint +is_a: UBERON:8480044 ! long bone cartilage element +property_value: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: part_of UBERON:0006767 ! head of femur + +[Term] +id: UBERON:8480063 +name: dorsal iris +def: "The dorsal part of the iris. In urodeles (newts and salamanders) the dorsal iris is involved in lens regeneration in a process named Wolffian lens regeneration." [PMID:17030116, PMID:29579253] +synonym: "dorsal rim of the iris" EXACT [PMID:29579253] +is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +property_value: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: overlaps UBERON:0002506 ! iris epithelium +relationship: part_of UBERON:0001769 ! iris + +[Term] +id: UBERON:8480065 +name: labial gland +def: "The labial gland is one of the minor salivary glands, located mainly under the mucosal epithelium of the upper and lower lip and within the orbicularis oris muscle fibers. The labial gland secrete mucous and serous substances to maintain oral health. In particular, the inferior labial gland not only promotes moisturization in the oral cavity but also secretes substances with antibacterial effects." [PMID:34422599] +synonym: "labial minor salivary gland" EXACT [PMID:34274288] +synonym: "labial salivary gland" EXACT [FMA:59792, NCIT:C32904] +xref: BTO:0001548 +is_a: UBERON:0001830 ! minor salivary gland +property_value: dc-contributor https://orcid.org/0000-0002-0819-0473 + +[Term] +id: UBERON:8480066 +name: interscapular region +def: "The region in the upper part of the back between the shoulder blades." [https://orcid.org/0000-0002-0819-0473] +is_a: UBERON:0000475 ! organism subdivision +property_value: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: part_of UBERON:0001137 ! dorsum + [Term] id: UBERON:8490000 name: right upper third secondary molar tooth @@ -378980,6 +382941,42 @@ relationship: connects UBERON:0000209 ! tetrapod frontal bone relationship: connects UBERON:0000210 ! tetrapod parietal bone property_value: dc-contributor https://orcid.org/0000-0001-8415-4848 +[Term] +id: UBERON:8500001 +name: euryon +def: "An anatomical point on the most lateral point of the neurocranium." [ISBN:9780873659505] +is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0006983 ! anatomical point +property_value: dc-contributor https://orcid.org/0000-0001-8415-4848 +relationship: part_of UBERON:0001703 ! neurocranium + +[Term] +id: UBERON:8500002 +name: supraorbital foramen +def: "A bony elongated opening located above the orbit and under the forehead." [https://en.wikipedia.org/wiki/Supraorbital_foramen] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0013685 ! foramen of skull +property_value: dc-contributor https://orcid.org/0000-0001-8415-4848 +relationship: part_of UBERON:0000209 ! tetrapod frontal bone + +[Term] +id: UBERON:8500003 +name: supraorbitale +def: "An anatomical point on the median point of the line joining the aboral borders of the supraorbital foramen." [ISBN:9780873659505] +is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0006983 ! anatomical point +property_value: dc-contributor https://orcid.org/0000-0001-8415-4848 +relationship: part_of UBERON:8500002 ! supraorbital foramen + +[Term] +id: UBERON:8500004 +name: entorbitale +def: "An anatomical point on the naso-medial indentation of the orbit that corresponds with the inner angle of the eye in the living animal." [ISBN:9780873659505] +is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0006983 ! anatomical point +property_value: dc-contributor https://orcid.org/0000-0001-8415-4848 +relationship: part_of UBERON:0001697 ! orbit of skull + [Term] id: UBERON:8600000 name: lobular bronchiole @@ -379074,6 +383071,10 @@ synonym: "intrasegmental bronchus" RELATED [https://doi.org/10.1016/B978-0-12-38 is_a: UBERON:0035767 ! intrapulmonary bronchus property_value: dc-contributor https://orcid.org/0000-0001-6677-8489 property_value: dc-contributor https://orcid.org/0000-0002-9185-3994 +relationship: has_part UBERON:0001956 ! cartilage of bronchus +relationship: has_part UBERON:0004242 ! bronchus smooth muscle +relationship: has_part UBERON:0004883 ! lung mesenchyme +relationship: has_part UBERON:8410043 ! bronchus submucosal gland relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000101 ! lobe of lung relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -379660,6 +383661,14 @@ def: "a is connected to b if and only if a and b are discrete structure, and the xref: RO:0002170 is_a: mereotopologically_related_to ! mereotopologically related to +[Typedef] +id: connecting_branch_of +def: "b connecting-branch-of s iff b is connected to s, and there exists some tree-like structure t such that the mereological sum of b plus s is either the same as t or a branching-part-of t." [] +xref: RO:0002252 +is_a: connected_to ! connected to +is_a: in_branching_relationship_with ! in branching relationship with +inverse_of: has_connecting_branch + [Typedef] id: connects name: connects @@ -380482,6 +384491,13 @@ is_a: has_component ! has component created_by: dos creation_date: 2017-05-24T09:49:21Z +[Typedef] +id: has_connecting_branch +def: "inverse of connecting branch of" [] +subset: RO:0002259 +xref: RO:0002253 +is_a: in_branching_relationship_with ! in branching relationship with + [Typedef] id: has_constituent_monomer xref: has_constituent_monomer @@ -381131,6 +385147,7 @@ name: in left side of namespace: spatial def: "X in left side of Y <=> if Y is subdivided into two left and right portions, X is part of the left portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000120 +xref: NCIT:C25229 is_a: in_lateral_side_of ! in lateral side of disjoint_from: in_right_side_of ! in right side of @@ -381162,6 +385179,7 @@ name: in right side of namespace: spatial def: "X in right side of Y <=> if Y is subdivided into two left and right portions, X is part of the right portion." [BSPO:PATO_mtg_2009] xref: BSPO:0000121 +xref: NCIT:C25228 is_a: in_lateral_side_of ! in lateral side of [Typedef] @@ -381865,6 +385883,7 @@ namespace: spatial def: "x proximal to y iff x is closer to the point of attachment with the body than y." [BSPO:cjm] comment: The elbow is proximal to the hand, but distal to the shoulder. xref: BSPO:0000100 +xref: NCIT:C25236 is_transitive: true [Typedef]