From 4f36ec267ce8e3673ea3d1e8e5ad7e52b2f7cbb1 Mon Sep 17 00:00:00 2001 From: Anita Caron Date: Thu, 18 Apr 2024 14:06:35 +0200 Subject: [PATCH] Fix ORCID individuals import (#3257) * extract orcids to import * create rule for orcidio_import.owl * import orcidio in uberon-edit * change recipe to use filter * make orcidio import custom in odk --------- Co-authored-by: Anita Caron --- .gitignore | 1 + docs/odk-workflows/ManageDocumentation.md | 2 - docs/odk-workflows/RepositoryFileStructure.md | 2 +- src/ontology/Makefile | 6 +- src/ontology/catalog-v001.xml | 1 + src/ontology/imports/merged_import.owl | 4720 ++++++++++++++--- src/ontology/imports/orcidio_import.owl | 367 ++ src/ontology/uberon-edit.obo | 1 + src/ontology/uberon-odk.yaml | 1 + src/ontology/uberon.Makefile | 14 + src/sparql/orcids.sparql | 7 + 11 files changed, 4504 insertions(+), 618 deletions(-) create mode 100644 src/ontology/imports/orcidio_import.owl create mode 100644 src/sparql/orcids.sparql diff --git a/.gitignore b/.gitignore index 200990f5e2..94f467e265 100644 --- a/.gitignore +++ b/.gitignore @@ -219,3 +219,4 @@ src/ontology/subsets/*.obo src/ontology/subsets/*.owl src/ontology/subsets/*.tsv src/ontology/imports/*_import.owl +!src/ontology/imports/orcidio_import.owl diff --git a/docs/odk-workflows/ManageDocumentation.md b/docs/odk-workflows/ManageDocumentation.md index f0f82ca441..55cbbb5dc3 100644 --- a/docs/odk-workflows/ManageDocumentation.md +++ b/docs/odk-workflows/ManageDocumentation.md @@ -43,5 +43,3 @@ The documentation is _not_ automatically updated from the Markdown, and needs to 3. Just to double check, you can now navigate to your documentation pages (usually https://obophenotype.github.io/uberon/). Just make sure you give GitHub 2-5 minutes to build the pages! - - diff --git a/docs/odk-workflows/RepositoryFileStructure.md b/docs/odk-workflows/RepositoryFileStructure.md index f5e4d4a8fb..04785c3fab 100644 --- a/docs/odk-workflows/RepositoryFileStructure.md +++ b/docs/odk-workflows/RepositoryFileStructure.md @@ -28,7 +28,7 @@ These are the current imports in UBERON | ncbitaxon | http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl | None | | ncbitaxondisjoints | http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl | None | | nbo | http://purl.obolibrary.org/obo/nbo.owl | None | -| orcidio | https://w3id.org/orcidio/orcidio.owl | None | +| orcidio | https://w3id.org/orcidio/orcidio.owl | custom | | omo | http://purl.obolibrary.org/obo/omo.owl | mirror | ## Components diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 25808ac4ca..60ab08e1f6 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -10,7 +10,7 @@ # More information: https://github.com/INCATools/ontology-development-kit/ # Fingerprint of the configuration file when this Makefile was last generated -CONFIG_HASH= 16a64e727250fbc31f79a269800d3885cc70b4db1e6b69119f66415f340619fa +CONFIG_HASH= d9dd1f14c02c9157faa08c0c33d811609f31616c2917255ed4dca5559cb438ec # ---------------------------------------- @@ -408,6 +408,10 @@ $(IMPORTDIR)/%_import.owl: $(MIRRORDIR)/merged.owl $(IMPORTDIR)/%_terms_combined .PRECIOUS: $(IMPORTDIR)/%_import.owl +## Module for ontology: orcidio + +$(IMPORTDIR)/orcidio_import.owl: $(MIRRORDIR)/merged.owl + echo "ERROR: You have configured your default module type to be custom; this behavior needs to be overwritten in uberon.Makefile!" && false ## Module for ontology: omo $(IMPORTDIR)/omo_import.owl: $(MIRRORDIR)/merged.owl $(IMPORTDIR)/omo_terms_combined.txt diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml index 7b0d4d11ac..c77f13fa35 100644 --- a/src/ontology/catalog-v001.xml +++ b/src/ontology/catalog-v001.xml @@ -51,6 +51,7 @@ + diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 78dc643453..d4cfa90066 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-03-22") + +Annotation(owl:versionInfo "2024-04-17") Declaration(Class()) Declaration(Class()) @@ -112,6 +112,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -380,7 +382,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -409,11 +410,13 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -563,6 +566,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -599,6 +603,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -616,6 +622,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -702,6 +709,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -728,7 +736,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -759,6 +766,11 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2207,12 +2219,14 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2234,7 +2248,16 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2854,7 +2877,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2882,6 +2904,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2913,6 +2937,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2952,6 +2977,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3028,6 +3054,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3337,6 +3367,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3493,6 +3524,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3507,6 +3539,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3755,12 +3788,12 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3782,7 +3815,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3905,6 +3941,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4552,7 +4589,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4660,7 +4696,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5354,6 +5389,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5379,6 +5415,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5624,6 +5661,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -5653,6 +5692,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6196,6 +6236,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6316,10 +6358,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -6416,6 +6454,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7032,7 +7071,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7297,8 +7335,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -7995,6 +8031,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8043,6 +8080,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8085,7 +8123,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8117,6 +8156,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8126,6 +8166,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8358,6 +8399,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8475,6 +8517,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8488,8 +8531,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8551,6 +8592,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9056,6 +9099,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9150,7 +9194,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9347,6 +9394,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10494,6 +10544,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10965,6 +11016,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11019,7 +11071,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11175,7 +11226,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11217,6 +11267,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11237,6 +11288,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11448,6 +11500,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11595,7 +11648,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11747,8 +11799,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -11773,10 +11825,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) -Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -12143,20 +12192,23 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -12190,6 +12242,7 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -12297,7 +12350,6 @@ AnnotationAssertion(rdfs:label "exp AnnotationAssertion( "Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root."@en) AnnotationAssertion(rdfs:label "has ontology root term"@en) -AnnotationAssertion(rdfs:label "preferred_root") # Annotation Property: (scheduled for obsoletion on or after) @@ -12469,13 +12521,13 @@ SubAnnotationPropertyOf( ) -# Annotation Property: () +# Annotation Property: () -SubAnnotationPropertyOf( ) +SubAnnotationPropertyOf( ) -# Annotation Property: () +# Annotation Property: () -SubAnnotationPropertyOf( ) +SubAnnotationPropertyOf( ) # Annotation Property: () @@ -12493,6 +12545,10 @@ SubAnnotationPropertyOf( ) +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: () SubAnnotationPropertyOf( ) @@ -12517,6 +12573,10 @@ SubAnnotationPropertyOf( ) +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: () SubAnnotationPropertyOf( ) @@ -12525,6 +12585,10 @@ SubAnnotationPropertyOf( ) +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: () SubAnnotationPropertyOf( ) @@ -12637,6 +12701,14 @@ AnnotationAssertion(rdfs:label "consider") +# Annotation Property: (created by) + +AnnotationAssertion(rdfs:label "created by") + +# Annotation Property: (creation date) + +AnnotationAssertion(rdfs:label "creation date") + # Annotation Property: (has_alternative_id) AnnotationAssertion(rdfs:label "has_alternative_id") @@ -12693,6 +12765,10 @@ AnnotationAssertion(rdfs:label "has_synonym_type") +# Annotation Property: (id) + +AnnotationAssertion(rdfs:label "id") + # Annotation Property: (in_subset) AnnotationAssertion(rdfs:label "in_subset") @@ -18323,6 +18399,40 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (D-aldohexose) + +AnnotationAssertion( "Any D-aldose having a chain of six carbon atoms in the molecule.") +AnnotationAssertion( "CHEBI:12990") +AnnotationAssertion( "CHEBI:21038") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "D-aldohexoses") +AnnotationAssertion( "CHEBI:17608") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "D-aldohexose") +SubClassOf( ) +SubClassOf( ) + +# Class: (D-glucose) + +AnnotationAssertion( "A glucose with D-configuration.") +AnnotationAssertion( "CHEBI:12965") +AnnotationAssertion( "CHEBI:20999") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:50-99-7") +AnnotationAssertion(Annotation( "NIST Chemistry WebBook") "CAS:50-99-7") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "D-gluco-hexose") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "D-glucose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChemIDplus") "D(+)-glucose") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "D-(+)-glucose") +AnnotationAssertion(Annotation( "ChemIDplus") "Traubenzucker") +AnnotationAssertion(Annotation( "NIST_Chemistry_WebBook") "dextrose") +AnnotationAssertion(Annotation( "ChemIDplus") "grape sugar") +AnnotationAssertion( "CHEBI:17634") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "D-glucose") +SubClassOf( ) +SubClassOf( ) + # Class: (geroprotector) AnnotationAssertion( "Any compound that supports healthy aging, slows the biological aging process, or extends lifespan.") @@ -21466,7 +21576,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "L-glutamate(1-)") SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -22026,7 +22135,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organic group") SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (organyl group) @@ -22719,38 +22829,6 @@ SubClassOf( ) SubClassOf( ) -# Class: (adrenaline) - -AnnotationAssertion( "A racemate comprising equimolar amounts of (R)-adrenaline and (S)-adrenaline.") -AnnotationAssertion(Annotation( "ChemIDplus") "Beilstein:2212160") -AnnotationAssertion(Annotation( "ChemIDplus") "CAS:329-65-7") -AnnotationAssertion(Annotation( "DrugCentral") "Drug_Central:4508") -AnnotationAssertion(Annotation( "Gmelin") "Gmelin:51559") -AnnotationAssertion( "LINCS:LSM-4958") -AnnotationAssertion(Annotation( "Europe PMC") "PMID:10052027") -AnnotationAssertion(Annotation( "Europe PMC") "PMID:24252294") -AnnotationAssertion(Annotation( "Europe PMC") "PMID:24719616") -AnnotationAssertion(Annotation( "Reaxys") "Reaxys:2212160") -AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "rac-4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol") -AnnotationAssertion( "chebi_ontology") -AnnotationAssertion(Annotation( "IUPHAR") "(+-)-adrenaline") -AnnotationAssertion(Annotation( "ChemIDplus") "(+-)-epinephrine") -AnnotationAssertion(Annotation( "ChemIDplus") "2-(methylamino)-1-(3,4-dihydroxyphenyl)ethanol") -AnnotationAssertion(Annotation( "ChemIDplus") "dl-adrenaline") -AnnotationAssertion(Annotation( "ChemIDplus") "epinephrine racemic") -AnnotationAssertion(Annotation( "ChEBI") "rac-adrenaline") -AnnotationAssertion(Annotation( "ChEBI") "racemic adrenaline") -AnnotationAssertion(Annotation( "ChemIDplus") Annotation( ) "racepinefrina") -AnnotationAssertion(Annotation( "ChemIDplus") Annotation( ) "racepinefrine") -AnnotationAssertion(Annotation( "ChemIDplus") Annotation( ) "racepinefrinum") -AnnotationAssertion( "CHEBI:33568") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "adrenaline") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (noradrenaline) AnnotationAssertion( "A catecholamine in which C-1 of the aminoethyl side-chain is hydroxy-substituted.") @@ -23117,6 +23195,19 @@ AnnotationAssertion(rdfs:label "pol SubClassOf( ) SubClassOf( ) +# Class: (amino-acid cation) + +AnnotationAssertion(Annotation( "ChEBI") "amino-acid cation") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid cation") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid cations") +AnnotationAssertion( "CHEBI:33703") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "amino-acid cation") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (alpha-amino acid) AnnotationAssertion( "An amino acid in which the amino group is located on the carbon atom at the position alpha to the carboxy group.") @@ -23138,6 +23229,7 @@ AnnotationAssertion( "alpha-amino acid") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (gamma-amino acid) @@ -23163,6 +23255,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "amino-acid residue") SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (amino acid) @@ -23182,6 +23276,7 @@ AnnotationAssertion(rdfs:label "ami SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (alpha-amino-acid residue) @@ -23195,6 +23290,18 @@ AnnotationAssertion(rdfs:label "alp SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (alpha-amino-acid cation) + +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid cation") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino acid cations") +AnnotationAssertion(Annotation( "ChEBI") "alpha-amino-acid cations") +AnnotationAssertion( "CHEBI:33719") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alpha-amino-acid cation") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (carbohydrate acid) AnnotationAssertion(Annotation( "ChEBI") "carbohydrate acid") @@ -25123,6 +25230,15 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (glucopyranose) + +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "glucopyranose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:37661") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "glucopyranose") +SubClassOf( ) + # Class: (phosphoric ester) AnnotationAssertion( "CHEBI:26019") @@ -25625,6 +25741,70 @@ AnnotationAssertion(rdfs:label "car SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (D-glucopyranose) + +AnnotationAssertion( "A glucopyranose having D-configuration.") +AnnotationAssertion(Annotation( "Beilstein") "Beilstein:1281604") +AnnotationAssertion(Annotation( "ChemIDplus") "CAS:2280-44-6") +AnnotationAssertion( "GlyGen:G15021LG") +AnnotationAssertion( "GlyTouCan:G15021LG") +AnnotationAssertion(Annotation( "Gmelin") "Gmelin:83256") +AnnotationAssertion( "HMDB:HMDB0000122") +AnnotationAssertion( "KEGG:C00031") +AnnotationAssertion( "KEGG:D00009") +AnnotationAssertion( "KNApSAcK:C00001122") +AnnotationAssertion( "MetaCyc:D-Glucose") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:15987845") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:16901854") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17336832") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17439666") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:17928662") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:19913595") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:26812026") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:32619908") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:7524207") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:9140037") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:9501190") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:9506998") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:9545565") +AnnotationAssertion(Annotation( "Reaxys") "Reaxys:1281604") +AnnotationAssertion( "Wikipedia:Glucose") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "D-glucopyranose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "D-Glc") +AnnotationAssertion(Annotation( "ChEBI") "D-Glcp") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "D-Glucose") +AnnotationAssertion(Annotation( "UniProt") "D-glucose") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Dextrose") +AnnotationAssertion(Annotation( "ChEBI") "Glc-OH") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Glucose") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Grape sugar") +AnnotationAssertion(Annotation( "GlyTouCan") "WURCS=2.0/1,1,0/[a2122h-1x_1-5]/1/") +AnnotationAssertion(Annotation( "ChEBI") "glucose") +AnnotationAssertion( "CHEBI:4167") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "D-glucopyranose") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (D-hexose) + +AnnotationAssertion( "A hexose that has D-configuration at position 5.") +AnnotationAssertion( "KEGG:C00738") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "D-Hexose") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "D-hexopyranose") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "D-hexoses") +AnnotationAssertion(Annotation( "UniProt") "a D-hexose") +AnnotationAssertion( "CHEBI:4194") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "D-hexose") +SubClassOf( ) + # Class: (formyl group) AnnotationAssertion( "CHEBI:24089") @@ -25886,6 +26066,17 @@ AnnotationAssertion( "dihydroxytetrahydrofuran") SubClassOf( ) +# Class: (double-stranded DNA) + +AnnotationAssertion( "KEGG:C00434") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Double-stranded DNA") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "dsDNA") +AnnotationAssertion( "CHEBI:4705") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "double-stranded DNA") +SubClassOf( ) + # Class: (acetate ester) AnnotationAssertion( "Any carboxylic ester where the carboxylic acid component is acetic acid.") @@ -26934,8 +27125,8 @@ SubClassOf( ObjectSomeValuesFrom( "A dicarboxylic acid dianion obtained by deprotonation of the two carboxy groups of bilirubin; major species at pH 7.3.") AnnotationAssertion(Annotation( "Beilstein") "Beilstein:4083310") AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "(4Z,15Z)-bilirubin IXalpha") AnnotationAssertion(Annotation( "ChEBI") "2,7,13,17-tetramethyl-1,19-dioxo-3,18-divinyl-1,10,19,22,23,24-hexahydro-21H-biline-8,12-dipropanoate") -AnnotationAssertion(Annotation( "UniProt") "bilirubin IXalpha") AnnotationAssertion(Annotation( "ChEBI") "bilirubin dianion") AnnotationAssertion( "CHEBI:57977") AnnotationAssertion( ) @@ -26976,6 +27167,23 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (cationic amino-acid residue) + +AnnotationAssertion( "An amino-acid residue protonated on nitrogen.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid cation residue") +AnnotationAssertion(Annotation( "ChEBI") "amino acid cation residues") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid cation residue") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid cation residues") +AnnotationAssertion(Annotation( "ChEBI") "cationic amino acid residue") +AnnotationAssertion(Annotation( "ChEBI") "cationic amino acid residues") +AnnotationAssertion(Annotation( "ChEBI") "cationic amino-acid residues") +AnnotationAssertion( "CHEBI:58942") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cationic amino-acid residue") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (organophosphate oxoanion) AnnotationAssertion( "An organic phosphoric acid derivative in which one or more oxygen atoms of the phosphate group(s) has been deprotonated.") @@ -27278,18 +27486,6 @@ AnnotationAssertion(rdfs:label "D-a SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (racemate) - -AnnotationAssertion( "A racemate is an equimolar mixture of a pair of enantiomers.") -AnnotationAssertion( "chebi_ontology") -AnnotationAssertion(Annotation( "ChEBI") "melange racemique") -AnnotationAssertion(Annotation( "ChEBI") "racemates") -AnnotationAssertion(Annotation( "ChEBI") "racemic mixture") -AnnotationAssertion( "CHEBI:60911") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "racemate") -SubClassOf( ) - # Class: (keratan sulfate) AnnotationAssertion( "A sulfated glycosaminoglycan, a linear polymer that consists of the repeating disaccharide [3)-beta-Gal-(1->4)-beta-GlcNAc-(1->] and containing sulfo groups located at random positions.") @@ -27700,6 +27896,65 @@ AnnotationAssertion( "organic acid") SubClassOf( ) +# Class: (cationic group) + +AnnotationAssertion( "A group that carries an overall positive charge.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "cationic groups") +AnnotationAssertion( "CHEBI:64766") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cationic group") +SubClassOf( ) + +# Class: (anionic group) + +AnnotationAssertion( "A group that carries an overall negative charge.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "anionic groups") +AnnotationAssertion( "CHEBI:64767") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "anionic group") +SubClassOf( ) + +# Class: (organic cationic group) + +AnnotationAssertion( "A cationic group that contains carbon.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic cationic groups") +AnnotationAssertion( "CHEBI:64769") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic cationic group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (organic anionic group) + +AnnotationAssertion( "An anionic group that contains carbon.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "organic anionic groups") +AnnotationAssertion( "CHEBI:64775") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organic anionic group") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (anionic amino-acid residue) + +AnnotationAssertion( "An amino-acid residue carrying an overall negative charge.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "ChEBI") "amino acid anion residue") +AnnotationAssertion(Annotation( "ChEBI") "amino acid anion residues") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid anion residue") +AnnotationAssertion(Annotation( "ChEBI") "amino-acid anion residues") +AnnotationAssertion(Annotation( "ChEBI") "anionic amino acid residue") +AnnotationAssertion(Annotation( "ChEBI") "anionic amino acid residues") +AnnotationAssertion(Annotation( "ChEBI") "anionic amino-acid residues") +AnnotationAssertion( "CHEBI:64898") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "anionic amino-acid residue") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (poison) AnnotationAssertion( "Any substance that causes disturbance to organisms by chemical reaction or other activity on the molecular scale, when a sufficient quantity is absorbed by the organism.") @@ -28702,10 +28957,11 @@ DisjointClasses( ) DisjointClasses( ) -# Class: (fibroblast neural crest derived) +# Class: (neural crest derived fibroblast) -AnnotationAssertion(Annotation( "https://orcid.org/0000-0001-5208-3432") "Any fibroblast that is deriived from the neural crest.") -AnnotationAssertion(rdfs:label "fibroblast neural crest derived") +AnnotationAssertion(Annotation( "https://orcid.org/0000-0001-5208-3432") "Any fibroblast that is derived from the neural crest.") +AnnotationAssertion( "fibroblast neural crest derived") +AnnotationAssertion(rdfs:label "neural crest derived fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -28716,6 +28972,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "neuronal receptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) # Class: (early embryonic cell (metazoa)) @@ -28744,6 +29001,7 @@ AnnotationAssertion( "germ line stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (male germ cell) @@ -28769,7 +29027,9 @@ AnnotationAssertion( "WBbt:0006799") AnnotationAssertion(rdfs:label "spermatocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (spermatid) @@ -28783,7 +29043,12 @@ AnnotationAssertion( "nematoblast") AnnotationAssertion(rdfs:label "spermatid") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sperm) @@ -28814,6 +29079,9 @@ AnnotationAssertion( "spermatogonial cell") AnnotationAssertion(rdfs:label "spermatogonium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (female germ cell) @@ -28825,6 +29093,7 @@ AnnotationAssertion( "female germ cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (female germ line stem cell) @@ -28848,6 +29117,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "oocyte") SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -28860,6 +29130,7 @@ AnnotationAssertion(rdfs:label "oogo EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (egg cell) @@ -28910,6 +29181,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "neuroblast (sensu Vertebrata)") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (stem cell) @@ -28925,8 +29197,9 @@ AnnotationAssertion( "This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’.") AnnotationAssertion(rdfs:label "stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (single fate stem cell) @@ -28937,6 +29210,7 @@ AnnotationAssertion( "single fate stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial fate stem cell) @@ -28966,9 +29240,23 @@ AnnotationAssertion( "Markers differ between species, and two sets of markers have been described for mice. HSCs are reportedly CD34-positive, CD45-positive, CD48-negative, CD150-positive, CD133-positive, and CD244-negative.") AnnotationAssertion(rdfs:label "hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (erythroid progenitor cell) @@ -29009,7 +29297,13 @@ AnnotationAssertion( "Morphology: mononuclear cell, diameter 12-20 _M, non-granular, N/C ratio 3/1 - 4/1; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; fetal: liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid.") AnnotationAssertion(rdfs:label "monoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (multi fate stem cell) @@ -29022,6 +29316,8 @@ AnnotationAssertion( "multipotent stem cell") AnnotationAssertion(rdfs:label "multi fate stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (common myeloid progenitor) @@ -29061,8 +29357,11 @@ AnnotationAssertion( "MEPs are reportedly CD19-negative, CD34-negative, CD45RA-negative, CD110-positive, CD117-positive, and SCA1-negative and reportedly express the transcription factors GATA-1 and NF-E2.") AnnotationAssertion(rdfs:label "megakaryocyte-erythroid progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) DisjointClasses( ) @@ -29085,6 +29384,8 @@ AnnotationAssertion(rdfs:comment "CL AnnotationAssertion(rdfs:label "common lymphoid progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (totipotent stem cell) @@ -29104,8 +29405,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "define using PATO mulit-potent or oligopotent?") AnnotationAssertion(rdfs:label "non-terminally differentiated cell") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (myoblast) @@ -29158,6 +29458,7 @@ AnnotationAssertion(rdfs:comment "no AnnotationAssertion(rdfs:label "ameloblast") SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -29174,8 +29475,9 @@ AnnotationAssertion( "legacy def: One of the cells forming the outer surface of dental pulp that produces tooth dentin.") AnnotationAssertion(rdfs:label "odontoblast") SubClassOf( ) +SubClassOf( ) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -29191,6 +29493,7 @@ AnnotationAssertion(rdfs:comment "no AnnotationAssertion(rdfs:label "osteoblast") SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -29202,6 +29505,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ciliated cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ependymal cell) @@ -29213,8 +29519,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ependymal cell") +SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell) @@ -29243,6 +29549,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ciliated epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (duct epithelial cell) @@ -29251,6 +29559,7 @@ AnnotationAssertion( "duct epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (branched duct epithelial cell) @@ -29268,13 +29577,14 @@ AnnotationAssertion(rdfs:label "bloo EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (non-branched duct epithelial cell) AnnotationAssertion(rdfs:label "non-branched duct epithelial cell") SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (columnar/cuboidal epithelial cell) @@ -29303,7 +29613,7 @@ AnnotationAssertion( "mesothelial cell") SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (stratified epithelial cell) @@ -29317,6 +29627,8 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:add") "A cell which moves among different tissues of the body, via blood, lymph, or other medium.") AnnotationAssertion(rdfs:label "circulating cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (blood cell) @@ -29328,6 +29640,7 @@ AnnotationAssertion( "blood cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of lung) @@ -29337,6 +29650,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of lung") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of pancreas) @@ -29347,6 +29661,8 @@ AnnotationAssertion( "pancreatic epithelial cell") AnnotationAssertion(rdfs:label "epithelial cell of pancreas") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (T cell) @@ -29370,6 +29686,7 @@ AnnotationAssertion(rdfs:label "T ce EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (osteoclast) @@ -29387,7 +29704,16 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (granulocyte) @@ -29404,7 +29730,17 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "granulocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuron associated cell) @@ -29421,6 +29757,7 @@ AnnotationAssertion( "The term \"neuroepithelial cell\" is used to describe both this cell type and neurecto-epithelial cell (CL:0000710).") AnnotationAssertion(rdfs:label "sensory epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) # Class: (interneuron) @@ -29461,6 +29798,7 @@ AnnotationAssertion( "sensory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (bipolar neuron) @@ -29470,6 +29808,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bipolar neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (multipolar neuron) @@ -29478,6 +29818,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "multipolar neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (autonomic neuron) @@ -29485,7 +29827,8 @@ AnnotationAssertion(Annotation( "FMA:80121") AnnotationAssertion(rdfs:label "autonomic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cholinergic neuron) @@ -29497,6 +29840,9 @@ AnnotationAssertion( "WBbt:0006840") AnnotationAssertion(rdfs:label "cholinergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mononuclear phagocyte) @@ -29548,6 +29894,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "basket cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebellar Golgi cell) @@ -29559,8 +29908,7 @@ AnnotationAssertion( "cerebellum Golgi cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cerebellar Golgi cell") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (granule cell) @@ -29584,6 +29932,7 @@ AnnotationAssertion( "Purkinje cell") SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (stellate neuron) @@ -29594,12 +29943,16 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stellate neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuron associated cell (sensu Vertebrata)) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "neuron associated cell (sensu Vertebrata)") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -29659,8 +30012,8 @@ AnnotationAssertion( "Oligodendrocytes are reportedly MDP-positive and CD4-negative.") AnnotationAssertion(rdfs:label "oligodendrocyte") SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (neurectodermal cell) @@ -29705,6 +30058,8 @@ AnnotationAssertion(rdfs:label "fibr EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (adipocyte) @@ -29734,6 +30089,7 @@ AnnotationAssertion( "VSAO relationship simplified OBO_REL:integral_part_of VSAO:0000118") AnnotationAssertion(rdfs:label "osteocyte") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -29748,7 +30104,6 @@ AnnotationAssertion( "chondrocyte") SubClassOf( ) SubClassOf( ) -SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -29762,6 +30117,7 @@ AnnotationAssertion(rdfs:comment "No AnnotationAssertion(rdfs:label "professional antigen presenting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (simple columnar epithelial cell) @@ -29794,6 +30150,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "melanocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (visual pigment cell) @@ -29820,6 +30179,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "secretory cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (exocrine cell) @@ -29829,6 +30190,7 @@ AnnotationAssertion( "exocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (glycosaminoglycan secreting cell) @@ -29843,6 +30205,8 @@ SubClassOf( "protein secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (peptic cell) @@ -29855,7 +30219,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peptic cell") SubClassOf( ) -SubClassOf( ) SubClassOf( ) # Class: (surfactant secreting cell) @@ -29864,6 +30227,7 @@ AnnotationAssertion(Annotation( "surfactant secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (club cell) @@ -29875,11 +30239,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "club cell") +SubClassOf( ) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (seromucus secreting cell) @@ -29896,7 +30259,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "goblet cell") SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (parietal cell) @@ -29906,9 +30269,7 @@ AnnotationAssertion( "oxyntic cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "parietal cell") -SubClassOf( ) -SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (endocrine cell) @@ -29922,7 +30283,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (enteroendocrine cell) @@ -29952,7 +30315,6 @@ The modern definition of neurosecretion has evolved to include the release of an AnnotationAssertion(rdfs:label "neuroendocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -29964,19 +30326,24 @@ AnnotationAssertion( "phaeochromocyte") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "chromaffin cell") +SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (peptide hormone secreting cell) AnnotationAssertion(rdfs:label "peptide hormone secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (insulin secreting cell) AnnotationAssertion( "BTO:0000783") AnnotationAssertion(rdfs:label "insulin secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type B pancreatic cell) @@ -30002,8 +30369,9 @@ AnnotationAssertion( "Pancreatic beta cells are also reportedly CD284-positive. Upon activation, they upregulate their CD14 expression.") AnnotationAssertion(rdfs:label "type B pancreatic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (glucagon secreting cell) @@ -30013,6 +30381,8 @@ AnnotationAssertion( "glucagon-secreting cell") AnnotationAssertion(rdfs:label "glucagon secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreatic A cell) @@ -30028,14 +30398,16 @@ AnnotationAssertion( "pancreatic A cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (somatostatin secreting cell) AnnotationAssertion(rdfs:label "somatostatin secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreatic D cell) @@ -30054,6 +30426,7 @@ AnnotationAssertion( "pancreatic D cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -30061,6 +30434,8 @@ SubClassOf( ObjectSomeValuesFrom( "steroid hormone secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (luteal cell) @@ -30072,15 +30447,16 @@ AnnotationAssertion(Annotation( "lutein cell") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "luteal cell") -SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (testosterone secreting cell) AnnotationAssertion(rdfs:label "testosterone secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Leydig cell) @@ -30096,6 +30472,7 @@ AnnotationAssertion( "Note that the Amphibian Anatomy Ontology (AA) has a class 'leydig cells' but this is unrelated") AnnotationAssertion(rdfs:label "Leydig cell") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -30103,6 +30480,8 @@ SubClassOf( ObjectSomeValuesFrom( "progesterone secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hepatocyte) @@ -30120,7 +30499,6 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (contractile cell) @@ -30142,7 +30520,7 @@ AnnotationAssertion( "myoepithelial cell") SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (muscle cell) @@ -30175,6 +30553,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell of skeletal muscle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (slow muscle cell) @@ -30220,6 +30600,9 @@ AnnotationAssertion( "receptor cell") AnnotationAssertion(rdfs:label "sensory receptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pain receptor cell) @@ -30236,11 +30619,15 @@ AnnotationAssertion(Annotation( "MP:0000972") "mechanoreceptor") AnnotationAssertion(rdfs:label "mechanoreceptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (touch receptor cell) AnnotationAssertion(rdfs:label "touch receptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (auditory hair cell) @@ -30256,6 +30643,8 @@ SubClassOf( ObjectSomeValuesFrom( "MESH:D002628") "A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood.") AnnotationAssertion(rdfs:label "chemoreceptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (olfactory receptor cell) @@ -30269,7 +30658,10 @@ AnnotationAssertion( "olfactory sensory neuron") AnnotationAssertion(rdfs:label "olfactory receptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (taste receptor cell) @@ -30280,7 +30672,9 @@ AnnotationAssertion( "taste receptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (photoreceptor cell) @@ -30293,6 +30687,7 @@ AnnotationAssertion(rdfs:label "phot AnnotationAssertion( "https://www.swissbiopics.org/api/image/Photoreceptor_cell.svg"^^xsd:anyURI) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (electrically active cell) @@ -30333,7 +30728,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "Sertoli cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ) @@ -30354,7 +30748,7 @@ AnnotationAssertion( "myelinating Schwann cell") SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (motile cell) @@ -30362,6 +30756,8 @@ SubClassOf( ObjectSomeValuesFrom( "FB:ma") "A cell that moves by its own activities.") AnnotationAssertion(rdfs:label "motile cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ectodermal cell) @@ -30399,6 +30795,8 @@ AnnotationAssertion( "non-nucleated cell") AnnotationAssertion(rdfs:label "anucleate cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (single nucleate cell) @@ -30406,11 +30804,15 @@ DisjointClasses( "FB:ma") Annotation( "GOC:tfm") "A cell with a single nucleus.") AnnotationAssertion(rdfs:label "single nucleate cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (binucleate cell) AnnotationAssertion(rdfs:label "binucleate cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (multinucleate cell) @@ -30422,6 +30824,8 @@ AnnotationAssertion( "syncytium") AnnotationAssertion(rdfs:label "multinucleate cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (erythrocyte) @@ -30437,7 +30841,12 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "erythrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (platelet) @@ -30456,11 +30865,11 @@ AnnotationAssertion( "Platelets are reportedly CCR1-positive, CCR2-negative, CCR3-positive, CCR4-positive, CCR5-negative, CCR6-negative, CCR7-negative, CCR8-negative, CCR9-negative, CCR10-negative, CD16-positive, CD23-positive, CD32-positive, CD40-positive, CD41-positive CD42-positive, CD61-positive, CD62P-positive, CD64-positive, CD89-positive, CD102-positive, CD147-positive (activated platelets), CD154-positive (activated platelets), CD162-positive, CD209, CD282-positive, CD284-positive, CD289-positive, CD181-negative, CD182-negative, CD183-negative, CD184-positive, CLEC2-positive, GPVI-positive, JAMC-positive, PAR1-positive, PAR2-negative, PAR3-positive, PAR4-positive, TSP1-positive, and TXA2R-positive. Platelets can reportedly produce CCL2, CCL3, CCL5, CCL7, CCL17, CD40L, CXCL1, CXCL4, CXCL4L1, CXCL5, CXCL7, CXCL8, CXCL12, EGF, factor V, factor VII, factor XI, factor XIII, bFGF, histamine, IGF-1, IL-1beta, PAI-1, PDGF, plasminogen, protein S, serotonin, TGF-beta, TFPI, VEGF, and vWF.") AnnotationAssertion(rdfs:label "platelet") SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (phagocyte) @@ -30475,6 +30884,7 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (macrophage) @@ -30494,8 +30904,10 @@ AnnotationAssertion(rdfs:comment "Mo AnnotationAssertion(rdfs:label "macrophage") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B cell) @@ -30516,20 +30928,21 @@ AnnotationAssertion( "B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (keratinizing barrier epithelial cell) AnnotationAssertion(rdfs:label "keratinizing barrier epithelial cell") SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (brush border epithelial cell) AnnotationAssertion(rdfs:label "brush border epithelial cell") +SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (stratified squamous epithelial cell) @@ -30550,6 +30963,7 @@ AnnotationAssertion( "Merkel cell") SubClassOf( ) SubClassOf(Annotation( "PMID:19782676") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (transitional epithelial cell) @@ -30567,12 +30981,15 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "eukaryotic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Eumycetozoan cell) AnnotationAssertion(rdfs:label "Eumycetozoan cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (eye photoreceptor cell) @@ -30583,6 +31000,7 @@ AnnotationAssertion( "eye photoreceptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (structural cell) @@ -30597,6 +31015,8 @@ AnnotationAssertion( "somatotrophin secreting cell") AnnotationAssertion(rdfs:label "somatotropin secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (gamete) @@ -30608,7 +31028,9 @@ AnnotationAssertion( "haploid germ cell") AnnotationAssertion(rdfs:label "gamete") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (crystallin accumulating cell) @@ -30626,6 +31048,7 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "tracheal epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (keratin accumulating cell) @@ -30649,6 +31072,7 @@ AnnotationAssertion(rdfs:label "kera EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -30676,7 +31100,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sebum secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) # Class: (mucus secreting cell) @@ -30698,7 +31123,7 @@ AnnotationAssertion( "pneumonocyte") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pneumocyte") -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (stuff accumulating cell) @@ -30717,15 +31142,17 @@ SubClassOf( "oxygen accumulating cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (migratory neural crest cell) AnnotationAssertion(Annotation( "doi:10.1016/j.stem.2015.02.017") "A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body.") AnnotationAssertion( "FMA:86667") AnnotationAssertion(rdfs:label "migratory neural crest cell") -SubClassOf( ) SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesenchyme condensation cell) @@ -30741,9 +31168,9 @@ AnnotationAssertion( "FMA:69262") "medullary chromaffin cell of adrenal gland") AnnotationAssertion(rdfs:label "adrenal medulla chromaffin cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (glioblast (sensu Vertebrata)) @@ -30754,7 +31181,7 @@ AnnotationAssertion( "glioblast (sensu Vertebrata)") SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (hair follicle dermal papilla cell) @@ -30763,6 +31190,8 @@ AnnotationAssertion(rdfs:comment "Ar AnnotationAssertion(rdfs:label "hair follicle dermal papilla cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (scleral cell) @@ -30771,6 +31200,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "scleral cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (choroidal cell of the eye) @@ -30779,6 +31210,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "choroidal cell of the eye") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (extraembryonic cell) @@ -30786,11 +31219,15 @@ SubClassOf( ObjectSomeValuesFrom( ) AnnotationAssertion(rdfs:label "extraembryonic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (amnioserosal cell) AnnotationAssertion(rdfs:label "amnioserosal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (trophoblast cell) @@ -30831,6 +31268,7 @@ AnnotationAssertion(rdfs:comment "Mu AnnotationAssertion(rdfs:label "multi-potent skeletal muscle stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (stratified epithelial stem cell) @@ -30843,6 +31281,7 @@ AnnotationAssertion(Annotation( "sphincter associated smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vascular associated smooth muscle cell) @@ -30856,6 +31295,7 @@ AnnotationAssertion(rdfs:label "vasc EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epidermal cell) @@ -30870,6 +31310,7 @@ AnnotationAssertion( "epidermal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (animal zygote) @@ -30881,7 +31322,9 @@ AnnotationAssertion( "animal zygote") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tracheoblast) @@ -30906,6 +31349,7 @@ SubClassOf( "doi:10.1016/B978-012369493-5.50008-0") "A blood cell of the circulatory system of arthropods.") AnnotationAssertion( "FBbt:00005063") AnnotationAssertion(rdfs:label "hemocyte (sensu Arthropoda)") +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -30920,6 +31364,7 @@ AnnotationAssertion(rdfs:label "tend EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (blood cell (sensu Nematoda and Protostomia)) @@ -30939,6 +31384,7 @@ AnnotationAssertion( "ganglion interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CNS interneuron) @@ -30948,6 +31394,8 @@ AnnotationAssertion( "Interneurons are commonly described as being only found in the central nervous system. However, in CL we define 'interneuron' more broadly as any neuron that is neither a motor neuron nor a sensory neuron, regardless of its location, so we need this term to refer strictly to interneurons of the central nervous system.") AnnotationAssertion(rdfs:label "CNS interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (electrically signaling cell) @@ -30969,12 +31417,16 @@ SubClassOf(Annotation( AnnotationAssertion(Annotation( "https://bio.libretexts.org/Bookshelves/Introductory_and_General_Biology/Biology_(Kimball)/07%3A_Cell_Division/7.04%3A_Polyploidy"^^xsd:anyURI) Annotation( "FB:ma") Annotation( "PMID:32646579") "A cell that contains more than two haploid sets of chromosomes.") AnnotationAssertion(rdfs:label "polyploid cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (haploid cell) AnnotationAssertion(Annotation( "FB:ma") Annotation( "GOC:tfm") "A cell whose nucleus contains a single haploid genome.") AnnotationAssertion(rdfs:label "haploid cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endopolyploid cell) @@ -31005,12 +31457,17 @@ SubClassOf( "GOC:tfm") "A peptide hormone secreting cell pituitary that produces luteinizing hormone.") AnnotationAssertion(rdfs:label "luteinizing hormone secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (prolactin secreting cell) AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "SANBI:mhl") "A peptide hormone cell that secretes prolactin.") AnnotationAssertion(rdfs:label "prolactin secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (melanocyte stimulating hormone secreting cell) @@ -31020,6 +31477,8 @@ AnnotationAssertion( "melanotroph") AnnotationAssertion(rdfs:label "melanocyte stimulating hormone secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (follicle stem cell (sensu Arthropoda)) @@ -31028,12 +31487,15 @@ AnnotationAssertion(Annotation( "FBbt:00004903") AnnotationAssertion(rdfs:label "follicle stem cell (sensu Arthropoda)") SubClassOf( ) +SubClassOf( ) SubClassOf(Annotation( "https://github.com/obophenotype/cell-ontology/issues/1943") ObjectSomeValuesFrom( )) # Class: (calcitonin secreting cell) AnnotationAssertion(rdfs:label "calcitonin secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (obliquely striated muscle cell) @@ -31041,6 +31503,8 @@ AnnotationAssertion(Annotation( "Examples include the somatic muscles of nemotodes and cephalopods.") AnnotationAssertion(rdfs:label "obliquely striated muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (chief cell of parathyroid gland) @@ -31101,7 +31565,16 @@ AnnotationAssertion( "dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (Langerhans cell) @@ -31118,8 +31591,11 @@ AnnotationAssertion( "Originally described in the dendritic cell ontology (DC_CL:0000021 )(PMID:19243617). These cells are also CD1a-high, CD14-negative, CD207-positive (langerin), CD324-positive (E-cadherin), and DCIR-positive. They reside in the epidermis.") AnnotationAssertion(rdfs:label "Langerhans cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epinephrine secreting cell) @@ -31129,11 +31605,14 @@ AnnotationAssertion( "epinephrine secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mineralocorticoid secreting cell) AnnotationAssertion(rdfs:label "mineralocorticoid secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (biogenic amine secreting cell) @@ -31148,6 +31627,7 @@ AnnotationAssertion( "serotonin secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (noradrenergic cell) @@ -31158,11 +31638,14 @@ AnnotationAssertion( "noradrenergic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (glucocorticoid secreting cell) AnnotationAssertion(rdfs:label "glucocorticoid secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (adrenocorticotropic hormone secreting cell) @@ -31174,6 +31657,8 @@ AnnotationAssertion( "GO:0051458") "corticotropin secreting cell") AnnotationAssertion(rdfs:label "adrenocorticotropic hormone secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (defensive cell) @@ -31188,8 +31673,9 @@ AnnotationAssertion( "ovarian follicle cell") AnnotationAssertion( "FBbt:00004904") AnnotationAssertion(rdfs:label "follicle cell of egg chamber") +SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) SubClassOf(Annotation( ) ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -31199,6 +31685,8 @@ AnnotationAssertion(Annotation( "FBbt:00058020") AnnotationAssertion(rdfs:label "juvenile hormone secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (visible light photoreceptor cell) @@ -31206,6 +31694,7 @@ AnnotationAssertion(Annotation( "visible light photoreceptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (inhibitory interneuron) @@ -31254,7 +31743,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "type D enteroendocrine cell") SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (theca cell) @@ -31264,8 +31753,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "theca cell") -SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (enkephalin secreting cell) @@ -31291,6 +31780,7 @@ AnnotationAssertion(rdfs:label "type SubClassOf( ) SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (gastrin secreting cell) @@ -31322,7 +31812,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cardiac muscle myoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle myoblast) @@ -31333,6 +31825,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle myoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (skeletal muscle myoblast) @@ -31341,13 +31835,17 @@ AnnotationAssertion( "skeletal myoblast") AnnotationAssertion(rdfs:label "skeletal muscle myoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (phagocyte (sensu Vertebrata)) AnnotationAssertion(Annotation( "GOC:tfm") "A phagocyte in vertebrates that is able to phagocytosis.") AnnotationAssertion(rdfs:label "phagocyte (sensu Vertebrata)") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (fungal cell) @@ -31355,6 +31853,7 @@ SubClassOf( ObjectSomeValuesFrom( "fungal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (syncytiotrophoblast cell) @@ -31370,6 +31869,8 @@ AnnotationAssertion( "syncytiotrophoblast cell") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/cell-ontology/issues/2100") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (afferent neuron) @@ -31419,6 +31920,7 @@ AnnotationAssertion( "Derived from UBERON:0002342 neural crest.") AnnotationAssertion(rdfs:label "melanoblast") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymphocyte) @@ -31435,7 +31937,11 @@ AnnotationAssertion( "Editors note: consider adding taxon constraint to vertebrata (PMID:18025161)") AnnotationAssertion(rdfs:label "lymphocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) @@ -31450,6 +31956,23 @@ AnnotationAssertion( "proerythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (basophilic erythroblast) @@ -31463,7 +31986,10 @@ AnnotationAssertion(Annotation( "basophilic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (polychromatophilic erythroblast) @@ -31478,6 +32004,10 @@ AnnotationAssertion(Annotation( "polychromatophilic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (orthochromatic erythroblast) @@ -31492,6 +32022,8 @@ AnnotationAssertion(Annotation( "orthochromatic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (megakaryocyte progenitor cell) @@ -31517,8 +32049,23 @@ AnnotationAssertion( "Lineage negative is described here as CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD14-negative, CD19-negative, CD20-negative, CD56-negative, Ly6g-negative, and Ter119-negative.") AnnotationAssertion(rdfs:label "megakaryocyte progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuronal brush cell) @@ -31562,8 +32109,18 @@ AnnotationAssertion( "Originally described in the dendritic cell ontology (DC_CL:0000042)(PMID:19243617). GMPs are reportedly CD16-positive, CD32-positive, CD34-positive, CD38-positive, CD45RA-positive, CD110-negative, CD117-positive, CD123-positive, and SCA1-negative.") AnnotationAssertion(rdfs:label "granulocyte monocyte progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (reticulocyte) @@ -31576,7 +32133,21 @@ AnnotationAssertion( "reticulocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (promonocyte) @@ -31589,7 +32160,11 @@ AnnotationAssertion( "Morphology: Mononuclear cell, diameter 14-18 _M, fine azurophilic granules; markers: CD11b (shared with many other myeloid cells); location: Adult: bone marrow; Fetal: Liver, Yolk Sac; role or process: hematopoiesis, monocyte development; lineage: hematopoietic, myeloid.") AnnotationAssertion(rdfs:label "promonocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (amacrine cell) @@ -31606,6 +32181,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "amacrine cell") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -31618,6 +32194,7 @@ AnnotationAssertion( "nucleate erythrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (angioblastic mesenchymal cell) @@ -31629,6 +32206,11 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "angioblastic mesenchymal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (amine precursor uptake and decarboxylation cell) @@ -31647,7 +32229,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "cardiac mesenchymal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (parafollicular cell) @@ -31662,9 +32246,13 @@ AnnotationAssertion(Annotation( "parafollicular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (retinal cone cell) @@ -31693,7 +32281,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "corneal epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (monocyte) @@ -31711,7 +32301,11 @@ AnnotationAssertion(rdfs:label "mono EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (germ cell) @@ -31733,12 +32327,15 @@ AnnotationAssertion( "odontoclast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (androgen secreting cell) AnnotationAssertion(Annotation( "GOC:tfm") "A steroid hormone secreting cell that secretes androgen.") AnnotationAssertion(rdfs:label "androgen secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (enucleate erythrocyte) @@ -31748,6 +32345,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "enucleate erythrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -31764,6 +32362,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pyramidal neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (retinal rod cell) @@ -31798,7 +32398,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "GABAergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (acinar cell) @@ -31820,7 +32422,10 @@ AnnotationAssertion(Annotation( "doi:10.1038/s41598-018-27692-8") rdfs:comment "Granule cells are the most abundant neuronal population in the olfactory bulb and are continuously renewed throughout life.") AnnotationAssertion(rdfs:label "olfactory granule cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -31862,7 +32467,9 @@ AnnotationAssertion(rdfs:label "hepa EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Mueller cell) @@ -31887,7 +32494,10 @@ AnnotationAssertion( "chromophil cell of anterior pituitary gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (acidophil cell of pars distalis of adenohypophysis) @@ -31913,6 +32523,7 @@ AnnotationAssertion(Annotation( "folliculostellate cell") SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (basal cell) @@ -31937,8 +32548,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney granular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (prickle cell) @@ -31974,6 +32587,7 @@ AnnotationAssertion( "pinealocyte") SubClassOf( ) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -31994,6 +32608,8 @@ AnnotationAssertion(rdfs:label "podo AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/cell-ontology/issues/1460") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (primary oocyte) @@ -32006,6 +32622,7 @@ AnnotationAssertion( "primary oocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (secondary oocyte) @@ -32017,6 +32634,7 @@ AnnotationAssertion( "secondary oocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (primary spermatocyte) @@ -32027,6 +32645,9 @@ AnnotationAssertion( "FMA:72292") AnnotationAssertion(rdfs:label "primary spermatocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (secondary spermatocyte) @@ -32037,7 +32658,10 @@ AnnotationAssertion( "FMA:72293") AnnotationAssertion(rdfs:label "secondary spermatocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fenestrated cell) @@ -32085,6 +32709,7 @@ AnnotationAssertion(rdfs:label "prim EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (female gamete) @@ -32103,7 +32728,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "glutamatergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (muscle precursor cell) @@ -32113,6 +32740,7 @@ AnnotationAssertion(rdfs:label "musc EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (radial glial cell) @@ -32130,6 +32758,9 @@ SubClassOf( ObjectSomeValuesFrom( ) AnnotationAssertion(rdfs:label "stellate interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (PP cell) @@ -32154,8 +32785,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dopaminergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sustentacular cell) @@ -32176,7 +32807,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "choroid plexus epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (leptomeningeal cell) @@ -32186,7 +32820,8 @@ AnnotationAssertion( "leptomeningeal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neurecto-epithelial cell) @@ -32198,13 +32833,15 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "neurecto-epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stratum granulosum cell) AnnotationAssertion(rdfs:label "stratum granulosum cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (somatic stem cell) @@ -32213,6 +32850,8 @@ AnnotationAssertion( "MESH:D053687") AnnotationAssertion(rdfs:label "somatic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (urothelial cell) @@ -32222,6 +32861,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "urothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (striated muscle cell) @@ -32232,6 +32873,8 @@ AnnotationAssertion( "striated muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (leukocyte) @@ -32250,10 +32893,14 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "leukocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (retinal ganglion cell) @@ -32308,6 +32955,10 @@ AnnotationAssertion( "This class encompasses the muscle cells responsible for heart* contraction in both vertebrates and arthropods. The ultrastucture of a wide range of arthropod heart cells has been examined including spiders, horseshoe crabs, crustaceans (see Sherman, 1973 and refs therein) and insects (see Lehmacher et al (2012) and refs therein). According to these refs, the cells participating in heart contraction in all cases are transversely striated. Insects hearts additionally contain ostial cells, also transversely striated muscle cells, but which do not participate in heart contraction.") AnnotationAssertion(rdfs:label "cardiac muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (retinal bipolar neuron) @@ -32322,9 +32973,12 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "retinal bipolar neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (cone retinal bipolar cell) @@ -32332,6 +32986,7 @@ AnnotationAssertion(Annotation( "cone retinal bipolar cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (nucleated thrombocyte) @@ -32340,8 +32995,10 @@ AnnotationAssertion( "Note that this is a non-mammalian cell type. Use platelet ; CL:0000233 for thrombocytes (platelets) in mammals.") AnnotationAssertion(rdfs:label "nucleated thrombocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myeloid cell) @@ -32353,6 +33010,7 @@ AnnotationAssertion( "myeloid cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (erythroid lineage cell) @@ -32381,7 +33039,22 @@ AnnotationAssertion( "erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myeloid leukocyte) @@ -32390,6 +33063,7 @@ AnnotationAssertion( "myeloid leukocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (neutrophil) @@ -32417,6 +33091,8 @@ AnnotationAssertion( "neutrophil") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesangial phagocyte) @@ -32425,6 +33101,8 @@ AnnotationAssertion( "mesangial phagocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mononuclear osteoclast) @@ -32433,6 +33111,7 @@ AnnotationAssertion(rdfs:comment "Mo AnnotationAssertion(rdfs:label "mononuclear osteoclast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (multinuclear osteoclast) @@ -32442,6 +33121,7 @@ AnnotationAssertion(rdfs:comment "Mo AnnotationAssertion(rdfs:label "multinuclear osteoclast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (multinuclear odontoclast) @@ -32452,6 +33132,7 @@ AnnotationAssertion(rdfs:comment "Mo AnnotationAssertion(rdfs:label "multinuclear odontoclast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (mononuclear odontoclast) @@ -32475,13 +33156,17 @@ AnnotationAssertion( "These cells are CD1a-negative, CD1b-positive, CD11a-positive, CD11c-positive, CD13-positive, CD14-negative, CD20-negative, CD21-negative, CD33-positive, CD40-negative, CD50-positive, CD54-positive, CD58-positive, CD68-negative, CD80-negative, CD83-negative, CD85j-positive, CD86-positive, CD89-negative, CD95-positive, CD120a-negative, CD120b-positive, CD123-negative, CD178-negative, CD206-negative, CD207-negative, CD209-negative, and TNF-alpha-negative. Upon TLR stimulation, they are capable of producing high levels of TNF-alpha, IL-6, CXCL8 (IL-8).") AnnotationAssertion(rdfs:label "myeloid dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (multinucleated phagocyte) AnnotationAssertion(Annotation( "GOC:add") Annotation( "GOC:tfm") "A phagocyte formed by the fusion of mononuclear phagocytes.") AnnotationAssertion(rdfs:label "multinucleated phagocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) # Class: (mature B cell) @@ -32494,8 +33179,11 @@ AnnotationAssertion( "Mature B cells are also reportedly CD10-negative, CD19-positive, CD22-positive, CD34-negative, CD48-positive, CD79a-positive, CD84-positive, CD127-negative, CD352-positive, RAG-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Transcription factors expressed: Pax5-positive.") AnnotationAssertion(rdfs:label "mature B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) DisjointClasses( ) DisjointClasses( ) @@ -32520,6 +33208,12 @@ AnnotationAssertion(rdfs:comment "Pl AnnotationAssertion(rdfs:label "plasma cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (memory B cell) @@ -32535,6 +33229,10 @@ AnnotationAssertion(rdfs:comment "Me AnnotationAssertion(rdfs:label "memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (naive B cell) @@ -32549,7 +33247,11 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "naive B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (immature B cell) @@ -32566,6 +33268,10 @@ AnnotationAssertion(rdfs:comment "Im AnnotationAssertion(rdfs:label "immature B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (precursor B cell) @@ -32580,6 +33286,8 @@ AnnotationAssertion( "precursor B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (transitional stage B cell) @@ -32599,7 +33307,12 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "transitional stage B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B-2 B cell) @@ -32618,6 +33331,8 @@ AnnotationAssertion(rdfs:comment "B- AnnotationAssertion(rdfs:label "B-2 B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pro-B cell) @@ -32639,6 +33354,10 @@ AnnotationAssertion(rdfs:comment "Hu AnnotationAssertion(rdfs:label "pro-B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (pro-T cell) @@ -32654,6 +33373,7 @@ AnnotationAssertion(rdfs:label "pro- EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thromboblast) @@ -32661,8 +33381,11 @@ AnnotationAssertion(Annotation( "Note that this is a non-mammalian cell type.") AnnotationAssertion(rdfs:label "thromboblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neutrophil progenitor cell) @@ -32671,8 +33394,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "neutrophil progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myeloblast) @@ -32681,7 +33406,13 @@ AnnotationAssertion( "FMA:83524") AnnotationAssertion(rdfs:label "myeloblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (hematopoietic multipotent progenitor cell) @@ -32698,8 +33429,23 @@ AnnotationAssertion( "Markers differ between mouse and human.") AnnotationAssertion(rdfs:label "hematopoietic multipotent progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) @@ -32715,6 +33461,8 @@ AnnotationAssertion(rdfs:comment "No AnnotationAssertion(rdfs:label "lymphoid lineage restricted progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (myeloid lineage restricted progenitor cell) @@ -32731,6 +33479,8 @@ AnnotationAssertion(rdfs:comment "No AnnotationAssertion(rdfs:label "myeloid lineage restricted progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mononuclear cell) @@ -32744,6 +33494,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mononuclear cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) # Class: (follicular B cell) @@ -32758,7 +33509,13 @@ AnnotationAssertion( "Follicular B cells are also reportedly CD48-positive, CD84-positive, CD229-positive, and CD352-positive.") AnnotationAssertion(rdfs:label "follicular B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (germinal center B cell) @@ -32777,6 +33534,8 @@ AnnotationAssertion(rdfs:comment "Ge AnnotationAssertion(rdfs:label "germinal center B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (marginal zone B cell of spleen) @@ -32798,6 +33557,14 @@ AnnotationAssertion(rdfs:comment "MZ AnnotationAssertion(rdfs:label "marginal zone B cell of spleen") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ciliated olfactory receptor neuron) @@ -32806,6 +33573,8 @@ AnnotationAssertion( "ciliated sensory neuron") AnnotationAssertion(rdfs:label "ciliated olfactory receptor neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (microvillous olfactory receptor neuron) @@ -32826,7 +33595,9 @@ AnnotationAssertion( "serotinergic neuron") AnnotationAssertion(rdfs:label "serotonergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (olfactory epithelial supporting cell) @@ -32839,7 +33610,7 @@ AnnotationAssertion( "olfactory epithelial supporting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) # Class: (sensory hair cell) @@ -32854,19 +33625,25 @@ SubClassOf( "SANBI:mhl") "Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface.") AnnotationAssertion(rdfs:label "neuromast hair cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (slow muscle myoblast) AnnotationAssertion(Annotation( "SANBI:mhl") "A skeletal muscle myoblast that differentiates into slow muscle fibers.") AnnotationAssertion(rdfs:label "slow muscle myoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fast muscle myoblast) AnnotationAssertion(Annotation( "SANBI:mhl") "A skeletal muscle myoblast that differentiates into fast muscle fibers.") AnnotationAssertion(rdfs:label "fast muscle myoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (classical monocyte) @@ -32879,6 +33656,13 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "classical monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tissue-resident macrophage) @@ -32893,6 +33677,7 @@ AnnotationAssertion( "tissue-resident macrophage") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (central nervous system macrophage) @@ -32902,15 +33687,22 @@ AnnotationAssertion( "central nervous system macrophage") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (perivascular macrophage) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "GO_REF:0000031") Annotation( "PMID:16507898") "A central nervous system macrophage found in small blood vessels in the brain. Markers include CD14+CD16+CD163+.") -AnnotationAssertion(rdfs:comment "Markers: Human/monkey, mice: CD163. Human: CD14+CD16+CD163+.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "GO_REF:0000031") Annotation( "PMID:16507898") Annotation( "PMID:37232741") "A border associated macrophage that is adjacent to a small blood vessel of a brain. A perivascular macrophage expresses the markers CD14, CD16 and CD163. In homeostatic conditions, this central nervous system macrophage has a non-motile cell body with extending and retracting projections through the blood vessel wall.") +AnnotationAssertion(Annotation( "PMID:37232741") Annotation( ) "pvMΦ") AnnotationAssertion(rdfs:label "perivascular macrophage") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myeloid suppressor cell) @@ -32920,6 +33712,11 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "myeloid suppressor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thymocyte) @@ -32938,6 +33735,7 @@ AnnotationAssertion( "thymocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (DN1 thymic pro-T cell) @@ -32953,6 +33751,12 @@ AnnotationAssertion( "DN1 thymic pro-T cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (early lymphoid progenitor) @@ -32969,7 +33773,13 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "early lymphoid progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thymic conventional dendritic cell) @@ -32978,6 +33788,10 @@ AnnotationAssertion(rdfs:comment "In AnnotationAssertion(rdfs:label "thymic conventional dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymphocyte of B lineage) @@ -32996,6 +33810,7 @@ AnnotationAssertion(Annotation( "antibody secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (IgE memory B cell) @@ -33010,6 +33825,7 @@ AnnotationAssertion( "IgE memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (preBCR-positive large pre-B-II cell) @@ -33017,6 +33833,10 @@ AnnotationAssertion(Annotation( "preBCR-positive large pre-B-II cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (preBCR-negative large pre-B-II cell) @@ -33024,6 +33844,10 @@ AnnotationAssertion(Annotation( "preBCR-negative large pre-B-II cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (small pre-B-II cell) @@ -33034,6 +33858,11 @@ AnnotationAssertion(rdfs:comment "Sm AnnotationAssertion(rdfs:label "small pre-B-II cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pre-B-II cell) @@ -33046,7 +33875,9 @@ AnnotationAssertion(rdfs:comment "pr AnnotationAssertion(rdfs:label "pre-B-II cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (pre-B-I cell) @@ -33059,7 +33890,13 @@ AnnotationAssertion(rdfs:comment "Hu AnnotationAssertion(rdfs:label "pre-B-I cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (large pre-B-II cell) @@ -33071,6 +33908,9 @@ AnnotationAssertion(rdfs:comment "La AnnotationAssertion(rdfs:label "large pre-B-II cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Bm1 B cell) @@ -33082,7 +33922,8 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "Bm1 B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Bm2 B cell) @@ -33094,6 +33935,8 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "Bm2 B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (Bm3-delta B cell) @@ -33105,6 +33948,9 @@ AnnotationAssertion( "Bm3-delta B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (Bm2' B cell) @@ -33119,7 +33965,11 @@ AnnotationAssertion(rdfs:comment "Bm AnnotationAssertion(rdfs:label "Bm2' B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Bm3 B cell) @@ -33132,7 +33982,11 @@ AnnotationAssertion(rdfs:comment "Bm AnnotationAssertion(rdfs:label "Bm3 B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Bm4 B cell) @@ -33145,7 +33999,11 @@ AnnotationAssertion(rdfs:comment "Bm AnnotationAssertion(rdfs:label "Bm4 B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Bm5 B cell) @@ -33156,8 +34014,10 @@ AnnotationAssertion( "Bm5 B cells are also reportedly CD10-positive, CD23-negative, CD38-negative, CD39-positive, CD44-positive, CD71-positive, and CD77-negative.") AnnotationAssertion(rdfs:label "Bm5 B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (unswitched memory B cell) @@ -33174,6 +34034,12 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "unswitched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (IgM memory B cell) @@ -33189,7 +34055,8 @@ AnnotationAssertion( "IgM memory B cells are also reportedly CD1c-positive, CD95-positive, CD80-positive, CD84-positive, CD86-positive, CD150-negative, CD229-positive, CD289-positive, and CD290-positive. Transcription factors: Notch2-positive, PAX5-positive, SpiB-positive, Ets1-positive, and OBF1-positive.") AnnotationAssertion(rdfs:label "IgM memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (class switched memory B cell) @@ -33204,7 +34071,10 @@ AnnotationAssertion(rdfs:comment "Pe AnnotationAssertion(rdfs:label "class switched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (IgA memory B cell) @@ -33220,6 +34090,7 @@ AnnotationAssertion(rdfs:comment "Ig AnnotationAssertion(rdfs:label "IgA memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (IgG memory B cell) @@ -33235,6 +34106,7 @@ AnnotationAssertion( "IgG memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (plasmablast) @@ -33249,7 +34121,12 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "plasmablast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (double negative memory B cell) @@ -33263,7 +34140,8 @@ AnnotationAssertion( "double negative memory B-lymphocyte") AnnotationAssertion(rdfs:label "double negative memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hematopoietic cell) @@ -33297,6 +34175,7 @@ AnnotationAssertion(rdfs:comment "Or AnnotationAssertion(rdfs:label "conventional dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor) @@ -33315,6 +34194,15 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "Kit and Sca1-positive hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor) @@ -33341,6 +34229,12 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "CD34-positive, CD38-positive common lymphoid progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) @@ -33351,6 +34245,11 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "CD115-positive monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (Kit-positive, CD34-positive common myeloid progenitor) @@ -33360,8 +34259,14 @@ AnnotationAssertion( "Markers are associated with mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000034)(PMID:19243617).") AnnotationAssertion(rdfs:label "Kit-positive, CD34-positive common myeloid progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) # Class: (CD34-positive, CD38-negative hematopoietic stem cell) @@ -33374,6 +34279,15 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "CD34-positive, CD38-negative hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Kit-positive, Sca1-positive common lymphoid progenitor) @@ -33385,7 +34299,16 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Kit-positive, Sca1-positive common lymphoid progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD34-positive, CD38-positive common myeloid progenitor) @@ -33394,8 +34317,15 @@ AnnotationAssertion( "Markers are associated with human cell type. Originally described in the dendritic cell ontology (DC_CL:0000038)(PMID:19243617).") AnnotationAssertion(rdfs:label "CD34-positive, CD38-positive common myeloid progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD7-negative lymphoid progenitor cell) @@ -33405,6 +34335,11 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "CD7-negative lymphoid progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD7-positive lymphoid progenitor cell) @@ -33415,6 +34350,10 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "CD7-positive lymphoid progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (common dendritic progenitor) @@ -33427,8 +34366,25 @@ AnnotationAssertion( "Surface markers are for mouse cells. Originally described in the dendritic cell ontology (DC_CL:0000041) CDP are reportedly CD2-negative, CD3-negative, CD4-negative, CD5-negative, CD8a-negative, CD11c-positive, CD14-negative, CD19-negative, CD20-negative, CD56-negative, B220-negative, Ly6g-negative, MHCII-positive, and Ter119-negative. (PMID:19243617).") AnnotationAssertion(rdfs:label "common dendritic progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD117-positive common myeloid progenitor OR CD217-positive common lymphoid progenitor) @@ -33446,7 +34402,9 @@ AnnotationAssertion( "doi:10.3389/fncir.2020.611841") rdfs:comment "It has been noted in at least some mammalian species that granule cells are the most numerous cell type in the cerebellum and in the brain, with at least 99% of all cerebellar neurons being granule cells.") AnnotationAssertion(rdfs:label "cerebellar granule cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (cortical granule cell) @@ -33454,12 +34412,17 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:mah") "Granule cell that is part of the cerebral cortex.") AnnotationAssertion(rdfs:label "cortical granule cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (hippocampal granule cell) AnnotationAssertion(Annotation( "GOC:mah") "Granule cell with a soma found in the hippocampus.") AnnotationAssertion(rdfs:label "hippocampal granule cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (bone cell) @@ -33471,6 +34434,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bone cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (terminally differentiated osteoblast) @@ -33486,6 +34451,7 @@ AnnotationAssertion( "VSAO relationship simplified OBO_REL:integral_part_of VSAO:0000118") AnnotationAssertion(rdfs:label "non-terminally differentiated osteoblast") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (IgD-negative memory B cell) @@ -33496,6 +34462,7 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "IgD-negative memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD14-positive monocyte) @@ -33508,6 +34475,11 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "CD14-positive monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD14-positive, CD16-low monocyte) @@ -33519,6 +34491,8 @@ AnnotationAssertion(rdfs:comment "De AnnotationAssertion(rdfs:label "CD14-positive, CD16-low monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (common myeloid progenitor, CD34-positive) @@ -33535,6 +34509,14 @@ AnnotationAssertion(rdfs:comment "CM AnnotationAssertion(rdfs:label "common myeloid progenitor, CD34-positive") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hematopoietic oligopotent progenitor cell, lineage-negative) @@ -33544,8 +34526,18 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "hematopoietic oligopotent progenitor cell, lineage-negative") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (erythroid progenitor cell, mammalian) @@ -33561,6 +34553,20 @@ AnnotationAssertion( "erythroid progenitor cell, mammalian") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymphocyte of B lineage, CD19-positive) @@ -33570,6 +34576,9 @@ AnnotationAssertion(rdfs:comment "Ty AnnotationAssertion(rdfs:label "lymphocyte of B lineage, CD19-positive") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B cell, CD19-positive) @@ -33583,6 +34592,7 @@ AnnotationAssertion( "B cell, CD19-positive") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) # Class: (Kit-positive erythroid progenitor cell) @@ -33594,6 +34604,14 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Kit-positive erythroid progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD34-positive, CD38-positive granulocyte monocyte progenitor) @@ -33605,6 +34623,8 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "CD34-positive, CD38-positive granulocyte monocyte progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (Kit-positive granulocyte monocyte progenitor) @@ -33616,7 +34636,15 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Kit-positive granulocyte monocyte progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD34-positive, GlyA-negative erythroid progenitor cell) @@ -33628,6 +34656,8 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "CD34-positive, GlyA-negative erythroid progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD34-negative, GlyA-negative proerythroblast) @@ -33639,6 +34669,8 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "CD34-negative, GlyA-negative proerythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell) @@ -33650,6 +34682,11 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell) @@ -33660,6 +34697,14 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (macrophage dendritic cell progenitor) @@ -33670,8 +34715,12 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "macrophage dendritic cell progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Kit-positive macrophage dendritic cell progenitor) @@ -33683,7 +34732,12 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Kit-positive macrophage dendritic cell progenitor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Kit-low proerythroblast) @@ -33694,7 +34748,12 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Kit-low proerythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (GlyA-positive basophilic erythroblast) @@ -33705,6 +34764,8 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "GlyA-positive basophilic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (Kit-negative, Ly-76 high basophilic erythroblast) @@ -33716,7 +34777,11 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "Kit-negative, Ly-76 high basophilic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Kit-negative, Ly-76 high polychromatophilic erythroblast) @@ -33727,7 +34792,11 @@ AnnotationAssertion( "Kit-negative, Ly-76 high polychromatophilic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD71-low, GlyA-positive polychromatic erythroblast) @@ -33738,7 +34807,9 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "CD71-low, GlyA-positive polychromatic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Kit-negative, Ly-76 high orthochromatophilic erythroblasts) @@ -33749,7 +34820,13 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "Kit-negative, Ly-76 high orthochromatophilic erythroblasts") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD71-negative, GlyA-positive orthochromatic erythroblast) @@ -33760,6 +34837,9 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "CD71-negative, GlyA-positive orthochromatic erythroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (Ly-76 high reticulocyte) @@ -33772,6 +34852,7 @@ AnnotationAssertion(rdfs:label "Ly-7 EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (GlyA-positive reticulocytes) @@ -33782,6 +34863,7 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "GlyA-positive reticulocytes") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (GlyA-positive erythrocyte) @@ -33793,6 +34875,8 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "GlyA-positive erythrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (Ly-76 high positive erythrocyte) @@ -33804,7 +34888,9 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Ly-76 high positive erythrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hematopoietic lineage restricted progenitor cell) @@ -33814,8 +34900,8 @@ AnnotationAssertion( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hematopoietic lineage restricted progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) @@ -33828,8 +34914,8 @@ AnnotationAssertion( "This cell type is intended to be compatible with any vertebrate hematopoietic oligopotent progenitor cell. For mammalian hematopoietic oligopotent progenitor cells known to be lineage-negative, please use the term 'hematopoietic oligopotent progenitor cell' (CL_0001060).") AnnotationAssertion(rdfs:label "hematopoietic oligopotent progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (short term hematopoietic stem cell) @@ -33843,6 +34929,8 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "short term hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (long term hematopoietic stem cell) @@ -33856,6 +34944,9 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "long term hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Slamf1-negative multipotent progenitor cell) @@ -33866,6 +34957,10 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Slamf1-negative multipotent progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (Slamf1-positive multipotent progenitor cell) @@ -33878,6 +34973,9 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Slamf1-positive multipotent progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) DisjointClasses( ) @@ -33890,6 +34988,9 @@ AnnotationAssertion(rdfs:comment "Ce AnnotationAssertion(rdfs:label "CD34-positive, CD38-negative multipotent progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (fraction A pre-pro B cell) @@ -33904,6 +35005,13 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "fraction A pre-pro B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fraction B precursor B cell) @@ -33916,6 +35024,8 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "fraction B precursor B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (fraction C precursor B cell) @@ -33927,6 +35037,13 @@ AnnotationAssertion( "fraction C precursor B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (fraction C' precursor B cell) @@ -33939,7 +35056,13 @@ AnnotationAssertion( "fraction C' precursor B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fraction D precursor B cell) @@ -33951,8 +35074,14 @@ AnnotationAssertion(Annotation( "Fraction D precursor B cells are also reportedly CD24-positive and sIgD-negative.") AnnotationAssertion(rdfs:label "fraction D precursor B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fraction E immature B cell) @@ -33963,7 +35092,12 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "fraction E immature B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fraction F mature B cell) @@ -33972,7 +35106,13 @@ AnnotationAssertion( "2010-04-30T03:01:48Z") AnnotationAssertion(rdfs:label "fraction F mature B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD8alpha-positive thymic conventional dendritic cell) @@ -33987,6 +35127,7 @@ AnnotationAssertion( "CD8alpha-positive thymic conventional dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type I pneumocyte) @@ -34012,6 +35153,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "type I pneumocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type II pneumocyte) @@ -34039,6 +35182,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "type II pneumocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreatic acinar cell) @@ -34055,8 +35201,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pancreatic acinar cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (type A enteroendocrine cell) @@ -34067,6 +35214,8 @@ AnnotationAssertion( AnnotationAssertion( "FMA:62939") AnnotationAssertion(rdfs:label "type A enteroendocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (Purkinje myocyte) @@ -34149,6 +35298,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brush cell of trachebronchial tree") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (endo-epithelial cell) @@ -34168,6 +35319,8 @@ AnnotationAssertion( AnnotationAssertion( "FMA:69074") AnnotationAssertion(rdfs:label "ecto-epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (meso-epithelial cell) @@ -34178,6 +35331,8 @@ AnnotationAssertion( "epithelial mesenchymal cell") AnnotationAssertion(rdfs:label "meso-epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreatic ductal cell) @@ -34191,7 +35346,9 @@ AnnotationAssertion( "pancreatic ductal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreatic centro-acinar cell) @@ -34205,7 +35362,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pancreatic centro-acinar cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type II cell of carotid body) @@ -34230,6 +35389,7 @@ AnnotationAssertion( "type II cell of adrenal medulla") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (type I cell of adrenal medulla) @@ -34241,6 +35401,7 @@ AnnotationAssertion( "type I cell of adrenal medulla") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (specialized cardiac myocyte) @@ -34262,6 +35423,7 @@ AnnotationAssertion( "nongranular leukocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (interstitial cell of Cajal) @@ -34279,6 +35441,7 @@ AnnotationAssertion(rdfs:comment "So AnnotationAssertion(rdfs:label "interstitial cell of Cajal") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (bone marrow cell) @@ -34293,6 +35456,7 @@ AnnotationAssertion(rdfs:comment "MH AnnotationAssertion(rdfs:label "bone marrow cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hilus cell of ovary) @@ -34316,6 +35480,8 @@ AnnotationAssertion( "internodal tract myocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cortical cell of adrenal gland) @@ -34328,9 +35494,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cortical cell of adrenal gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (type I cell of adrenal cortex) @@ -34343,6 +35509,7 @@ AnnotationAssertion(rdfs:label "type EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD38-positive naive B cell) @@ -34357,6 +35524,7 @@ AnnotationAssertion( "CD38-positive naive B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD38-negative naive B cell) @@ -34371,6 +35539,7 @@ AnnotationAssertion( "CD38-negative naive B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (IgG-positive double negative memory B cell) @@ -34393,6 +35562,7 @@ AnnotationAssertion( "IgG-positive double negative memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (IgG-negative double negative memory B cell) @@ -34415,6 +35585,7 @@ AnnotationAssertion( "IgG-negative double negative memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD38-positive IgG memory B cell) @@ -34429,6 +35600,7 @@ AnnotationAssertion( "CD38-positive IgG memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (IgD-positive CD38-positive IgG memory B cell) @@ -34436,12 +35608,14 @@ AnnotationAssertion(Annotation( "IgD-positive CD38-positive IgG memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (IgD-negative CD38-positive IgG memory B cell) AnnotationAssertion(Annotation( "GOC:dsd") Annotation( "GOC:rhs") Annotation( "GOC:tfm") Annotation( "PMID:20123131") "An IgD-negative CD38-positive IgG memory B cell is a CD38-positive IgG-positive that has class switched and lacks expression of IgD on the cell surface with the phenotype IgD-negative, CD38-positive, and IgG-positive.") AnnotationAssertion(rdfs:label "IgD-negative CD38-positive IgG memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) # Class: (CD38-negative IgG memory B cell) @@ -34450,6 +35624,8 @@ AnnotationAssertion(Annotation( "CD38-negative IgG memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B220-positive CD38-positive naive B cell) @@ -34468,13 +35644,15 @@ AnnotationAssertion( "B220-positive CD38-positive naive B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B220-low CD38-positive naive B cell) AnnotationAssertion(Annotation( "GOC:dsd") Annotation( "GOC:rhs") Annotation( "GOC:tfm") Annotation( "PMID:20123131") "A B220-low CD38-positive naive B cell is a CD38-positive naive B cell that has the phenotype B220-low, CD38-positive, surface IgD-positive, surface IgM-positive, and CD27-negative, that has not yet been activated by antigen in the periphery.") AnnotationAssertion(rdfs:label "B220-low CD38-positive naive B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD38-negative unswitched memory B cell) @@ -34489,6 +35667,7 @@ AnnotationAssertion( "CD38-negative unswitched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B220-positive CD38-negative unswitched memory B cell) @@ -34496,13 +35675,15 @@ AnnotationAssertion(Annotation( "B220-positive CD38-negative unswitched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B220-low CD38-negative unswitched memory B cell) AnnotationAssertion(Annotation( "GOC:dsd") Annotation( "GOC:rhs") Annotation( "GOC:tfm") Annotation( "PMID:20123131") "A B220-low CD38-negative unswitched memory B cell is a CD38-negative unswitched memory B cell that has the phenotype B220-low, CD38-negative, IgD-positive, CD138-negative, and IgG-negative.") AnnotationAssertion(rdfs:label "B220-low CD38-negative unswitched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD38-positive unswitched memory B cell) @@ -34517,6 +35698,7 @@ AnnotationAssertion( "CD38-positive unswitched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B220-positive CD38-positive unswitched memory B cell) @@ -34524,13 +35706,15 @@ AnnotationAssertion(Annotation( "B220-positive CD38-positive unswitched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B220-low CD38-positive unswitched memory B cell) AnnotationAssertion(Annotation( "GOC:dsd") Annotation( "GOC:rhs") Annotation( "GOC:tfm") Annotation( "PMID:20123131") "A B220-low CD38-positive unswitched memory B cell is a CD38-positive unswitched memory B cell that has the phenotype B220-low, CD38-positive, IgD-positive, CD138-negative, and IgG-negative.") AnnotationAssertion(rdfs:label "B220-low CD38-positive unswitched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (IgG-negative class switched memory B cell) @@ -34546,6 +35730,7 @@ AnnotationAssertion( "IgG-negative class switched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD38-negative IgG-negative class switched memory B cell) @@ -34553,6 +35738,7 @@ AnnotationAssertion(Annotation( "CD38-negative IgG-negative class switched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD38-positive IgG-negative class switched memory B cell) @@ -34560,6 +35746,7 @@ AnnotationAssertion(Annotation( "CD38-positive IgG-negative class switched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD24-positive CD38-negative IgG-negative class switched memory B cell) @@ -34567,6 +35754,7 @@ AnnotationAssertion(Annotation( "CD24-positive CD38-negative IgG-negative class switched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD24-negative CD38-negative IgG-negative class switched memory B cell) @@ -34574,6 +35762,7 @@ AnnotationAssertion(Annotation( "CD24-negative CD38-negative IgG-negative class switched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B220-positive CD38-positive IgG-negative class switched memory B cell) @@ -34581,13 +35770,15 @@ AnnotationAssertion(Annotation( "B220-positive CD38-positive IgG-negative class switched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B220-low CD38-positive IgG-negative class switched memory B cell) AnnotationAssertion(Annotation( "GOC:dsd") Annotation( "GOC:rhs") Annotation( "GOC:tfm") Annotation( "PMID:20123131") "A B220-low CD38-positive IgG-negative memory B cell is a CD38-positive IgG-negative class switched memory B cell that lacks IgG on the cell surface with the phenotype B220-low, CD38-positive, and IgG-positive.") AnnotationAssertion(rdfs:label "B220-low CD38-positive IgG-negative class switched memory B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stromal cell of ovary) @@ -34599,6 +35790,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "stromal cell of ovary") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stromal cell of ovarian medulla) @@ -34609,6 +35802,7 @@ AnnotationAssertion( "stromal cell of ovarian medulla") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type II cell of adrenal cortex) @@ -34646,6 +35840,8 @@ AnnotationAssertion( "endothelial cell of lymphatic vessel") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of vascular tree) @@ -34675,6 +35871,7 @@ EquivalentClasses( ObjectIntersection SubClassOf(Annotation( "true") ) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (capillary endothelial cell) @@ -34689,7 +35886,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "capillary endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ciliated columnar cell of tracheobronchial tree) @@ -34715,6 +35913,9 @@ AnnotationAssertion( "FMA:87170") AnnotationAssertion(rdfs:label "dental pulp cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of uterus) @@ -34726,6 +35927,7 @@ AnnotationAssertion( "epithelial cell of uterus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (corneocyte) @@ -34761,6 +35963,7 @@ AnnotationAssertion( "epithelial debris of Malassez") AnnotationAssertion(rdfs:label "epithelial cell of Malassez") SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (olfactory epithelial cell) @@ -34772,7 +35975,9 @@ AnnotationAssertion( "olfactory epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (basal cell of olfactory epithelium) @@ -34784,6 +35989,8 @@ AnnotationAssertion( "basal cell of olfactory epithelium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (keratinized cell of the oral mucosa) @@ -34793,6 +36000,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "keratinized cell of the oral mucosa") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -34809,8 +36017,9 @@ AnnotationAssertion( "extraglomerular mesangial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (follicular cell of ovary) @@ -34835,6 +36044,7 @@ AnnotationAssertion(rdfs:label "foll EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of stomach) @@ -34845,6 +36055,7 @@ AnnotationAssertion( "epithelial cell of stomach") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mucous cell of stomach) @@ -34854,8 +36065,8 @@ AnnotationAssertion( AnnotationAssertion( "FMA:63464") AnnotationAssertion(rdfs:label "mucous cell of stomach") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stem cell of gastric gland) @@ -34866,7 +36077,9 @@ AnnotationAssertion( "stem cell of gastric gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (basal cell of epidermis) @@ -34879,6 +36092,8 @@ AnnotationAssertion(rdfs:label "basa EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) # Class: (glomerular endothelial cell) @@ -34893,6 +36108,7 @@ AnnotationAssertion(rdfs:label "glom EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ) # Class: (granulocytopoietic cell) @@ -34904,6 +36120,7 @@ AnnotationAssertion( "granulocytopoietic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (monopoietic cell) @@ -34914,6 +36131,7 @@ AnnotationAssertion( "monopoietic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hepatic stem cell) @@ -34926,6 +36144,7 @@ AnnotationAssertion(rdfs:label "hepa AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/cell-ontology/issues/800") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (oncocyte) @@ -34958,6 +36177,8 @@ AnnotationAssertion( "Hurthle cells") AnnotationAssertion(rdfs:label "oxyphil cell of thyroid") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (epithelial cell of tracheobronchial tree) @@ -34968,6 +36189,7 @@ AnnotationAssertion( "epithelial cell of tracheobronchial tree") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (brush cell of epithelium proper of large intestine) @@ -34982,8 +36204,8 @@ AnnotationAssertion( "Brush cells are a distinct cell type from brush border cell-types.") AnnotationAssertion(rdfs:label "brush cell of epithelium proper of large intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) +SubClassOf( ) # Class: (brush cell) @@ -35007,6 +36229,9 @@ AnnotationAssertion( AnnotationAssertion( "FMA:263220") AnnotationAssertion(rdfs:label "brush cell of lobular bronchiole") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (brush cell of terminal bronchiole) @@ -35016,6 +36241,9 @@ AnnotationAssertion( AnnotationAssertion( "FMA:263228") AnnotationAssertion(rdfs:label "brush cell of terminal bronchiole") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (brush cell of trachea) @@ -35030,6 +36258,7 @@ AnnotationAssertion(rdfs:label "brus EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (brush cell of bronchus) @@ -35041,6 +36270,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brush cell of bronchus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (intermediate epitheliocyte) @@ -35086,6 +36317,7 @@ AnnotationAssertion(rdfs:label "lens EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of prostate) @@ -35099,6 +36331,7 @@ AnnotationAssertion( "epithelial cell of prostate") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of prostatic duct) @@ -35111,6 +36344,7 @@ AnnotationAssertion(rdfs:label "epit EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of prostatic acinus) @@ -35122,6 +36356,7 @@ AnnotationAssertion(Annotation( "epithelial cell of prostatic acinus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (basal cell of prostatic acinus) @@ -35132,6 +36367,8 @@ AnnotationAssertion( "FMA:74265") "basal epithelial cell of prostatic acinus") AnnotationAssertion(rdfs:label "basal cell of prostatic acinus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (basal epithelial cell of prostatic duct) @@ -35142,6 +36379,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "basal epithelial cell of prostatic duct") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (marrow fibroblast) @@ -35152,6 +36392,7 @@ AnnotationAssertion( "marrow fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) # Class: (pulmonary interstitial fibroblast) @@ -35165,6 +36406,8 @@ AnnotationAssertion( "pulmonary interstitial fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (nucleate cell) @@ -35174,6 +36417,8 @@ AnnotationAssertion( AnnotationAssertion( "FMA:67513") AnnotationAssertion(rdfs:label "nucleate cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of sphincter of pupil) @@ -35187,6 +36432,7 @@ AnnotationAssertion( "smooth muscle cell of sphincter of pupil") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (peripheral blood stem cell) @@ -35201,6 +36447,8 @@ AnnotationAssertion( "peripheral blood stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pluripotent stem cell) @@ -35224,6 +36472,7 @@ AnnotationAssertion(rdfs:label "inte EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of alimentary canal) @@ -35233,6 +36482,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "epithelial cell of alimentary canal") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of esophagus) @@ -35244,6 +36494,7 @@ AnnotationAssertion( "epithelial cell of esophagus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of large intestine) @@ -35257,6 +36508,7 @@ AnnotationAssertion( "epithelial cell of large intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of small intestine) @@ -35268,6 +36520,7 @@ AnnotationAssertion( "epithelial cell of small intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stromal cell of endometrium) @@ -35308,6 +36561,7 @@ AnnotationAssertion(rdfs:label "epit EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thyroid follicular cell) @@ -35332,8 +36586,8 @@ AnnotationAssertion( AnnotationAssertion( "FMA:70547") AnnotationAssertion(rdfs:label "epithelial cell of parathyroid gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (endothelial cell of viscerocranial mucosa) @@ -35355,6 +36609,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endothelial cell of sinusoid") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type A cell of stomach) @@ -35365,6 +36621,7 @@ AnnotationAssertion( "type A cell of stomach") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) # Class: (type D cell of colon) @@ -35378,7 +36635,7 @@ AnnotationAssertion( "type D cell of colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) # Class: (type D cell of small intestine) @@ -35392,7 +36649,7 @@ AnnotationAssertion( "type D cell of small intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf( ) +SubClassOf( ) # Class: (type D cell of stomach) @@ -35416,6 +36673,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "histamine secreting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreatic PP cell) @@ -35434,6 +36692,9 @@ AnnotationAssertion( "The term PP cell of pancreatic acinus was obsoleted due to a lack of evidence, making PP cell of pancreatic islets synonymous with pancreatic PP cell.") AnnotationAssertion(rdfs:label "pancreatic PP cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type I cell of carotid body) @@ -35462,6 +36723,7 @@ AnnotationAssertion( "epithelial cell of thymus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type-1 epithelial cell of thymus) @@ -35487,6 +36749,7 @@ AnnotationAssertion(rdfs:label "type EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -35519,6 +36782,7 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of skin gland) @@ -35531,6 +36795,7 @@ AnnotationAssertion( "epithelial cell of skin gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (somatotroph) @@ -35559,6 +36824,9 @@ AnnotationAssertion( "endocrine-paracrine cell of prostate gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (supporting cell of cochlea) @@ -35568,6 +36836,9 @@ AnnotationAssertion( AnnotationAssertion( "FMA:79796") AnnotationAssertion(rdfs:label "supporting cell of cochlea") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (supporting cell of vestibular epithelium) @@ -35577,6 +36848,8 @@ AnnotationAssertion( AnnotationAssertion( "FMA:75607") AnnotationAssertion(rdfs:label "supporting cell of vestibular epithelium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neural cell) @@ -35588,6 +36861,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "neural cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (connective tissue cell) @@ -35600,6 +36875,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "connective tissue cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (embryonic cell (metazoa)) @@ -35621,20 +36898,31 @@ AnnotationAssertion( "amniocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) -# Class: (myoepithelial cell of mammary gland) +# Class: (basal-myoepithelial cell of mammary gland) -AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:11250738") Annotation( "PMID:19022771") "A myoepithelial cell that surrounds milk-secreting luminal epithelial cells. This cell type contracts under the stimulation of oxytocin and is attached to the basement membrane by hemidesmosomes and to the adjacent luminal cells by desmosomes. This cell type expresses high level of keratin-14 and is estrogen receptor alpha negative.") +AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "PMID:11250738") Annotation( "PMID:19022771") Annotation( "PMID:38059556") "A myoepithelial cell that is part of a mammary gland and is located in the basal layer. During lactation, a basal-myoepithelial cell of mammary gland contracts under the stimulation of oxytocin. In humans, a basal-myoepithelial cell of mammary gland can be identified by high levels of CD49f and low levels of EpCAM.") +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "2010-09-20T11:42:14Z") +AnnotationAssertion(Annotation( "PMID:37694522") "basal myoepithelial cell") +AnnotationAssertion(Annotation( "PMID:37380767") "basal-myoepithelial cell") AnnotationAssertion( "CALOHA:TS-2378") AnnotationAssertion( "FMA:67800") -AnnotationAssertion(Annotation( "FMA:67800") "basal cell of lactiferous duct") -AnnotationAssertion( "myoepithelial cell of lactiferous gland") +AnnotationAssertion(Annotation( "PMID:11250738") "myoepithelial cell of mammary gland") +AnnotationAssertion(Annotation( "FMA:67800") "basal cell of lactiferous duct") +AnnotationAssertion( "myoepithelial cell of lactiferous gland") +AnnotationAssertion(Annotation( ) "B-Myo cell") +AnnotationAssertion(Annotation( "PMID:38059556") Annotation( ) "BM") +AnnotationAssertion(Annotation( "PMID:37380767") Annotation( ) "basal") AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "myoepithelial cell of mammary gland") +AnnotationAssertion(Annotation( "PMID:38059556") rdfs:comment "Due inconsistencies in naming this and other mammary gland epithelial cell types, several mammary gland experts gathered for a breast atlas annotation jamboree organized by Chan-Zuckerberg initiative. They agreed to label this cell type as basal-myoepithelial cell (and abbreviated: B-Myo cell).") +AnnotationAssertion(rdfs:label "basal-myoepithelial cell of mammary gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) # Class: (lactocyte) @@ -35658,6 +36946,8 @@ AnnotationAssertion(rdfs:label "lact EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (luminal epithelial cell of mammary gland) @@ -35684,6 +36974,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mammary gland epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (bronchial epithelial cell) @@ -35694,6 +36986,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bronchial epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (basal epithelial cell of tracheobronchial tree) @@ -35718,6 +37011,7 @@ AnnotationAssertion( "ciliated cell of the bronchus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) # Class: (neural crest derived adipocyte) @@ -35726,6 +37020,7 @@ AnnotationAssertion( "2010-09-20T02:25:25Z") AnnotationAssertion(rdfs:label "neural crest derived adipocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (preadipocyte) @@ -35788,7 +37083,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endocardial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (progenitor cell of endocrine pancreas) @@ -35809,6 +37105,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "gestational hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fetal liver hematopoietic progenitor cell) @@ -35818,7 +37115,16 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "fetal liver hematopoietic progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (yolk sac hematopoietic stem cell) @@ -35829,7 +37135,14 @@ AnnotationAssertion( "yolk sac hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (placental hematopoietic stem cell) @@ -35839,6 +37152,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "placental hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebellar granule cell precursor) @@ -35850,6 +37164,7 @@ AnnotationAssertion(Annotation( "doi:10.3389/fncir.2020.611841") Annotation( ) "GCP") AnnotationAssertion(rdfs:label "cerebellar granule cell precursor") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (keratocyte) @@ -35865,8 +37180,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "keratocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cortical thymic epithelial cell) @@ -35881,6 +37196,7 @@ AnnotationAssertion( "cortical thymic epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (medullary thymic epithelial cell) @@ -35893,6 +37209,7 @@ AnnotationAssertion( "medullary thymic epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myometrial cell) @@ -35904,6 +37221,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "myometrial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (trabecular meshwork cell) @@ -35914,6 +37233,7 @@ AnnotationAssertion( "trabecular meshwork cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (respiratory epithelial cell) @@ -35926,6 +37246,7 @@ AnnotationAssertion( "respiratory epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (respiratory goblet cell) @@ -35936,6 +37257,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "respiratory goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (myotube) @@ -35948,6 +37270,9 @@ AnnotationAssertion( "single cell sarcomere") AnnotationAssertion(rdfs:label "myotube") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ear hair cell) @@ -35957,6 +37282,9 @@ AnnotationAssertion( AnnotationAssertion( "ear receptor cell") AnnotationAssertion(rdfs:label "ear hair cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Schwann cell precursor) @@ -35967,6 +37295,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "Schwann cell precursor") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (immature Schwann cell) @@ -35990,6 +37319,11 @@ AnnotationAssertion( "intermediate monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (Gr1-high classical monocyte) @@ -36001,6 +37335,11 @@ AnnotationAssertion(rdfs:comment "Ma AnnotationAssertion(rdfs:label "Gr1-high classical monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD14-positive, CD16-positive monocyte) @@ -36013,6 +37352,8 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "CD14-positive, CD16-positive monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Gr1-positive, CD43-positive monocyte) @@ -36021,7 +37362,10 @@ AnnotationAssertion( "2010-10-04T12:49:49Z") AnnotationAssertion(rdfs:label "Gr1-positive, CD43-positive monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (fraction B/C precursor B cell) @@ -36032,6 +37376,9 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "fraction B/C precursor B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Peyer's patch B cell) @@ -36041,7 +37388,13 @@ AnnotationAssertion( AnnotationAssertion( "Peyers patch B cell") AnnotationAssertion(rdfs:label "Peyer's patch B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (immature T cell) @@ -36056,6 +37409,7 @@ AnnotationAssertion( "immature T cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (nucleated reticulocyte) @@ -36065,6 +37419,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "nucleated reticulocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (enucleated reticulocyte) @@ -36076,7 +37431,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enucleated reticulocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (early T lineage precursor) @@ -36092,6 +37449,11 @@ AnnotationAssertion(rdfs:comment "ET AnnotationAssertion(rdfs:label "early T lineage precursor") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (oligodendrocyte precursor cell) @@ -36108,9 +37470,9 @@ AnnotationAssertion( ) AnnotationAssertion(Annotation( "ISBN:9780702028991") Annotation( "PMID:10704434") Annotation( "PMID:2182078") rdfs:comment "This cell type can be purified from optic nerves and other regions of the embryonic, postnatal and adult rat CNS and can be differentiated in vitro to oligodendrocytes and type-2 astrocytes. Some references use the terms 'oligodendrocyte precursor cell' and 'oligodendrocyte type-2 astrocyte (O-2A) progenitor' to refer to the same entity (e.g., PMID:10704434), while others describe an oligodendrocyte type-2 astrocyte (O-2A) progenitor cell as the precurosr to oligodendrocyte- and type-2 astrocyte- progenitor cells (e.g, ISBN:9780702028991).") AnnotationAssertion(rdfs:label "oligodendrocyte precursor cell") +SubClassOf( ) SubClassOf( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell) @@ -36122,6 +37484,8 @@ AnnotationAssertion( "Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epidermal Langerhans cell) @@ -36134,6 +37498,10 @@ AnnotationAssertion( "epidermal Langerhans cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD8alpha-negative thymic conventional dendritic cell) @@ -36146,6 +37514,7 @@ AnnotationAssertion( "CD8alpha-negative thymic conventional dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (CD11b-positive dendritic cell) @@ -36155,6 +37524,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "CD11b-positive dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Gr1-high myeloid suppressor cell) @@ -36165,6 +37535,8 @@ AnnotationAssertion( "Gr1-high myeloid suppressor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Gr1-low myeloid suppressor cell) @@ -36175,6 +37547,8 @@ AnnotationAssertion( "Gr1-low myeloid suppressor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (MHC-II-negative classical monocyte) @@ -36185,6 +37559,7 @@ AnnotationAssertion( "MHC-II-negative classical monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (MHC-II-positive classical monocyte) @@ -36196,6 +37571,7 @@ AnnotationAssertion( "MHC-II-positive classical monocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (nasal mucosa goblet cell) @@ -36206,6 +37582,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nasal mucosa goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (peritubular myoid cell) @@ -36216,6 +37593,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "peritubular myoid cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (dermal melanocyte) @@ -36224,6 +37602,8 @@ AnnotationAssertion( "2010-12-03T03:17:05Z") AnnotationAssertion(rdfs:label "dermal melanocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hair follicle melanocyte) @@ -36232,7 +37612,8 @@ AnnotationAssertion( "2010-12-03T03:17:09Z") AnnotationAssertion(rdfs:label "hair follicle melanocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) # Class: (epithelial melanocyte) @@ -36243,6 +37624,7 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "epithelial melanocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (retinal melanocyte) @@ -36252,6 +37634,9 @@ AnnotationAssertion( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "retinal melanocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (strial intermediate cell) @@ -36260,8 +37645,10 @@ AnnotationAssertion( "2010-12-03T03:29:15Z") AnnotationAssertion(rdfs:label "strial intermediate cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (organ of Corti supporting cell) @@ -36271,6 +37658,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "organ of Corti supporting cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (auditory epithelial cell) @@ -36280,6 +37668,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "auditory epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cardiocyte) @@ -36294,6 +37683,8 @@ AnnotationAssertion( "From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart.") AnnotationAssertion(rdfs:label "cardiocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (spongiotrophoblast cell) @@ -36317,6 +37708,7 @@ AnnotationAssertion(rdfs:label "adve EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (enteric smooth muscle cell) @@ -36328,6 +37720,7 @@ AnnotationAssertion( "enteric smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (langerin-positive lymph node dendritic cell) @@ -36337,6 +37730,10 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "langerin-positive lymph node dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney epithelial cell) @@ -36347,6 +37744,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) # Class: (subcutaneous adipocyte) @@ -36361,6 +37759,7 @@ AnnotationAssertion( "subcutaneous adipocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (renal filtration cell) @@ -36380,6 +37779,7 @@ AnnotationAssertion(Annotation( "mesonephric podocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (metanephric podocyte) @@ -36390,6 +37790,7 @@ AnnotationAssertion(Annotation( "metanephric podocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of cervix) @@ -36409,6 +37810,7 @@ AnnotationAssertion(Annotation( "GOC:tfm") "uterine cervix epithelial cell") AnnotationAssertion(rdfs:label "epithelial cell of cervix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of amnion) @@ -36421,6 +37823,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of amnion") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (amnion mesenchymal stem cell) @@ -36430,6 +37834,8 @@ AnnotationAssertion( AnnotationAssertion( "amniotic membrane stem cell") AnnotationAssertion(rdfs:label "amnion mesenchymal stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intrahepatic cholangiocyte) @@ -36441,6 +37847,7 @@ AnnotationAssertion( "intrahepatic cholangiocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (aortic smooth muscle cell) @@ -36451,7 +37858,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "aortic smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesenchymal stem cell of the bone marrow) @@ -36460,6 +37868,8 @@ AnnotationAssertion( "2011-02-28T01:47:47Z") AnnotationAssertion(rdfs:label "mesenchymal stem cell of the bone marrow") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (chorionic membrane mesenchymal stem cell) @@ -36470,6 +37880,8 @@ AnnotationAssertion( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "chorionic membrane mesenchymal stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vein endothelial cell) @@ -36486,6 +37898,7 @@ AnnotationAssertion( "vein endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (embryonic blood vessel endothelial progenitor cell) @@ -36504,6 +37917,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "fibroblast of the aortic adventitia") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of cardiac tissue) @@ -36516,6 +37930,7 @@ AnnotationAssertion(rdfs:label "fibr EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of choroid plexus) @@ -36525,6 +37940,8 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "fibroblast of choroid plexus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of the conjunctiva) @@ -36534,6 +37951,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "fibroblast of the conjunctiva") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of dermis) @@ -36542,6 +37960,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "fibroblast of dermis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of gingiva) @@ -36550,6 +37969,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "fibroblast of gingiva") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of lung) @@ -36562,6 +37982,7 @@ AnnotationAssertion( "fibroblast of lung") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of lymphatic vessel) @@ -36571,6 +37992,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "fibroblast of lymphatic vessel") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of mammary gland) @@ -36581,6 +38003,7 @@ AnnotationAssertion( "fibroblast of mammary gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of periodontium) @@ -36590,6 +38013,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "fibroblast of periodontium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of pulmonary artery) @@ -36601,6 +38025,7 @@ AnnotationAssertion( "fibroblast of pulmonary artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hair follicle cell) @@ -36609,6 +38034,8 @@ AnnotationAssertion( "2011-03-01T04:11:01Z") AnnotationAssertion(rdfs:label "hair follicle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (inner root sheath cell) @@ -36617,8 +38044,9 @@ AnnotationAssertion( "2011-03-01T04:27:51Z") AnnotationAssertion(rdfs:label "inner root sheath cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (outer root sheath cell) @@ -36627,7 +38055,9 @@ AnnotationAssertion( "2011-03-01T04:29:47Z") AnnotationAssertion(rdfs:label "outer root sheath cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hair germinal matrix cell) @@ -36638,6 +38068,8 @@ AnnotationAssertion( "hair germinal matrix cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intestinal epithelial cell) @@ -36647,6 +38079,7 @@ AnnotationAssertion( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (nucleus pulposus cell of intervertebral disc) @@ -36657,6 +38090,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "nucleus pulposus cell of intervertebral disc") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesenchymal stem cell of umbilical cord) @@ -36665,6 +38099,9 @@ AnnotationAssertion( "2011-03-01T09:55:12Z") AnnotationAssertion(rdfs:label "mesenchymal stem cell of umbilical cord") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesenchymal stem cell of adipose tissue) @@ -36675,6 +38112,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesenchymal stem cell of adipose tissue") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hepatic mesenchymal stem cell) @@ -36684,6 +38123,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "hepatic mesenchymal stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (vertebral mesenchymal stem cell) @@ -36693,6 +38133,8 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "vertebral mesenchymal stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Schwann cell) @@ -36720,6 +38162,7 @@ AnnotationAssertion( "stromal cell of pancreas") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (central nervous system pericyte) @@ -36729,6 +38172,8 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "central nervous system pericyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (placental epithelial cell) @@ -36737,7 +38182,9 @@ AnnotationAssertion( "2011-03-02T03:21:30Z") AnnotationAssertion(rdfs:label "placental epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesenteric preadipocyte) @@ -36747,14 +38194,17 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "mesenteric preadipocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (omentum preadipocyte) +AnnotationAssertion(Annotation( "PMID:21484051") "A preadipocyte that is part of an omentum.") AnnotationAssertion( ) AnnotationAssertion( "2011-03-03T04:19:42Z") AnnotationAssertion(rdfs:label "omentum preadipocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (preadipocyte of the breast) @@ -36764,14 +38214,17 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "preadipocyte of the breast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (perirenal preadipocyte) +AnnotationAssertion(Annotation( "PMID:20106964") Annotation( "PMID:31079959") "A preadipocyte that is part of a perirenal fat tissue.") AnnotationAssertion( ) AnnotationAssertion( "2011-03-03T04:20:04Z") AnnotationAssertion(rdfs:label "perirenal preadipocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (subcutaneous preadipocyte) @@ -36781,6 +38234,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "subcutaneous preadipocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (renal cortical epithelial cell) @@ -36803,6 +38257,8 @@ AnnotationAssertion( "retinal blood vessel endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (retinal pigment epithelial cell) @@ -36817,7 +38273,10 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "retinal pigment epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of the umbilical vein) @@ -36827,7 +38286,8 @@ AnnotationAssertion( "2011-03-06T05:00:51Z") AnnotationAssertion(rdfs:label "smooth muscle cell of the umbilical vein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of the brachiocephalic vasculature) @@ -36836,7 +38296,8 @@ AnnotationAssertion( "2011-03-06T05:00:58Z") AnnotationAssertion(rdfs:label "smooth muscle cell of the brachiocephalic vasculature") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of the brain vasculature) @@ -36846,6 +38307,8 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "smooth muscle cell of the brain vasculature") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of the pulmonary artery) @@ -36858,7 +38321,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle cell of the pulmonary artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of the coronary artery) @@ -36869,7 +38333,9 @@ AnnotationAssertion( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle cell of the coronary artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of the internal thoracic artery) @@ -36878,7 +38344,8 @@ AnnotationAssertion( "2011-03-06T05:01:41Z") AnnotationAssertion(rdfs:label "smooth muscle cell of the internal thoracic artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of the umbilical artery) @@ -36887,7 +38354,8 @@ AnnotationAssertion( "2011-03-06T05:01:48Z") AnnotationAssertion(rdfs:label "smooth muscle cell of the umbilical artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of the subclavian artery) @@ -36896,7 +38364,8 @@ AnnotationAssertion( "2011-03-06T05:01:52Z") AnnotationAssertion(rdfs:label "smooth muscle cell of the subclavian artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of the carotid artery) @@ -36905,7 +38374,8 @@ AnnotationAssertion( "2011-03-06T05:01:56Z") AnnotationAssertion(rdfs:label "smooth muscle cell of the carotid artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of bladder) @@ -36918,6 +38388,7 @@ AnnotationAssertion( "smooth muscle cell of bladder") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (bronchial smooth muscle cell) @@ -36929,7 +38400,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bronchial smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of the esophagus) @@ -36939,6 +38411,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "smooth muscle cell of the esophagus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of trachea) @@ -36948,7 +38421,8 @@ AnnotationAssertion( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle cell of trachea") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (uterine smooth muscle cell) @@ -36959,6 +38433,7 @@ AnnotationAssertion( "uterine smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (annulus pulposus cell) @@ -36968,6 +38443,7 @@ AnnotationAssertion( "annulus pulposus cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (astrocyte of the cerebellum) @@ -36978,6 +38454,8 @@ AnnotationAssertion( "astrocyte of the cerebellum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hippocampal astrocyte) @@ -36990,7 +38468,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hippocampal astrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) # Class: (astrocyte of the cerebral cortex) @@ -37002,7 +38481,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "astrocyte of the cerebral cortex") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) # Class: (astrocyte of the spinal cord) @@ -37012,6 +38492,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "astrocyte of the spinal cord") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (migratory enteric neural crest cell) @@ -37030,6 +38511,8 @@ AnnotationAssertion( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hippocampal neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (raphe nuclei neuron) @@ -37039,6 +38522,8 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "raphe nuclei neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuron of the dorsal spinal cord) @@ -37048,6 +38533,8 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "neuron of the dorsal spinal cord") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuron of the ventral spinal cord) @@ -37057,6 +38544,8 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "neuron of the ventral spinal cord") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (striatum neuron) @@ -37065,7 +38554,8 @@ AnnotationAssertion( "2011-03-06T07:47:12Z") AnnotationAssertion(rdfs:label "striatum neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuron of the substantia nigra) @@ -37075,6 +38565,8 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "neuron of the substantia nigra") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (adipocyte of omentum tissue) @@ -37086,6 +38578,7 @@ AnnotationAssertion( "adipocyte of omentum tissue") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (perirenal adipocyte) @@ -37097,6 +38590,7 @@ AnnotationAssertion( "perirenal adipocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (adipocyte of breast) @@ -37111,6 +38605,7 @@ AnnotationAssertion(rdfs:comment "Ad AnnotationAssertion(rdfs:label "adipocyte of breast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of umbilical vein) @@ -37121,6 +38616,7 @@ AnnotationAssertion( "endothelial cell of umbilical vein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (skin fibroblast) @@ -37135,6 +38631,7 @@ AnnotationAssertion( "skin fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (gingival epithelial cell) @@ -37142,6 +38639,8 @@ AnnotationAssertion( "2011-03-14T12:46:28Z") AnnotationAssertion(rdfs:label "gingival epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (prostate stromal cell) @@ -37153,6 +38652,7 @@ AnnotationAssertion( "prostate stromal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (acinar cell of salivary gland) @@ -37163,6 +38663,7 @@ AnnotationAssertion( "acinar cell of salivary gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (seminiferous tubule epithelial cell) @@ -37171,6 +38672,7 @@ AnnotationAssertion( "2011-03-15T11:59:23Z") AnnotationAssertion(rdfs:label "seminiferous tubule epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -37181,6 +38683,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "epithelial cell of upper respiratory tract") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of lower respiratory tract) @@ -37190,6 +38693,7 @@ AnnotationAssertion( "epithelial cell of lower respiratory tract") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of anal column) @@ -37198,6 +38702,8 @@ AnnotationAssertion( "2011-07-08T12:11:38Z") AnnotationAssertion(rdfs:label "epithelial cell of anal column") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (keratinized epithelial cell of the anal canal) @@ -37208,6 +38714,7 @@ AnnotationAssertion(rdfs:label "kera EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ) # Class: (endothelial cell of venous sinus of spleen) @@ -37234,6 +38741,7 @@ AnnotationAssertion(rdfs:label "endo EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (glandular cell of endometrium) @@ -37243,7 +38751,8 @@ AnnotationAssertion( AnnotationAssertion( "FMA:86489") AnnotationAssertion(rdfs:label "glandular cell of endometrium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (glandular cell of esophagus) @@ -37266,6 +38775,7 @@ AnnotationAssertion( "glandular cell of the large intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (glandular cell of stomach) @@ -37277,6 +38787,7 @@ AnnotationAssertion( "glandular cell of stomach") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (myocardial endocrine cell of atrium) @@ -37287,6 +38798,7 @@ AnnotationAssertion( "myocardial endocrine cell of atrium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cardioblast) @@ -37325,6 +38837,8 @@ AnnotationAssertion( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tongue muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neural crest derived neuroblast) @@ -37333,6 +38847,7 @@ AnnotationAssertion( "2011-08-22T09:24:15Z") AnnotationAssertion(rdfs:label "neural crest derived neuroblast") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (PP cell of intestine) @@ -37343,6 +38858,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "PP cell of intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (kidney cortical cell) @@ -37351,6 +38867,8 @@ AnnotationAssertion( "2011-10-25T03:49:41Z") AnnotationAssertion(rdfs:label "kidney cortical cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (spinal cord interneuron) @@ -37359,6 +38877,7 @@ AnnotationAssertion(rdfs:comment "Is AnnotationAssertion(rdfs:label "spinal cord interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ionocyte) @@ -37375,6 +38894,8 @@ AnnotationAssertion(Annotation( "macular hair cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (renal principal cell) @@ -37393,8 +38914,7 @@ AnnotationAssertion( ) "MCC"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "multi-ciliated epithelial cell") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (auditory epithelial supporting cell) @@ -37414,6 +38934,8 @@ AnnotationAssertion(rdfs:comment "Us AnnotationAssertion(rdfs:label "lymphangioblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vascular lymphangioblast) @@ -37425,6 +38947,7 @@ AnnotationAssertion( "vascular lymphangioblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (somatomotor neuron) @@ -37432,7 +38955,9 @@ AnnotationAssertion(Annotation( "somatic motor neuron") AnnotationAssertion(rdfs:label "somatomotor neuron"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hepatoblast) @@ -37480,6 +39005,7 @@ AnnotationAssertion( "2012-06-15T05:15:11Z") AnnotationAssertion(rdfs:label "preodontoblast") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -37510,6 +39036,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "preosteoblast") SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -37522,8 +39051,10 @@ AnnotationAssertion( AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enteric neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (non-striated muscle cell) @@ -37546,6 +39077,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "skeletal muscle fiber"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (somatic muscle myotube) @@ -37553,6 +39086,8 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:22274696") Annotation( "PMID:8720463") "A myotube that is part of some somatic muscle. Examples include arthropod somatic muscle cells.") AnnotationAssertion(rdfs:label "somatic muscle myotube") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (somatic muscle cell) @@ -37566,6 +39101,8 @@ SubClassOf( "PMID:8720463") "A somatic muscle cell that is oblquely striated. Examples include the somatic muscles of nematodes.") AnnotationAssertion(rdfs:label "obliquely striated somatic muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (visceral muscle cell) @@ -37574,18 +39111,24 @@ AnnotationAssertion(Annotation( "FBbt:00005070") AnnotationAssertion(rdfs:label "visceral muscle cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (striated visceral muscle cell) AnnotationAssertion(Annotation( "GOC:dos") "A visceral muscle cell that is striated. Examples include the visceral muscle cells of arhtropods.") AnnotationAssertion(rdfs:label "striated visceral muscle cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) +SubClassOf( ) # Class: (transversely striated visceral muscle cell) AnnotationAssertion(Annotation( "GOC:dos") "A visceral muscle that is transversely striated. Examples include the visceral muscle cells of arthropods.") AnnotationAssertion(rdfs:label "transversely striated visceral muscle cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (adult skeletal muscle myoblast) @@ -37594,12 +39137,16 @@ AnnotationAssertion(Annotation( "The vast majority of these cells develop from skeletal muscle satellite cells, although there are some reports of other origins.") AnnotationAssertion(rdfs:label "adult skeletal muscle myoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (somatic muscle myoblast) AnnotationAssertion( "A myoblast that is commited to developing into a somatic muscle.") AnnotationAssertion(rdfs:label "somatic muscle myoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesenchymal cell) @@ -37609,7 +39156,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesenchymal cell") -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -37617,12 +39164,17 @@ SubClassOf( ObjectSomeValuesFrom( "anterior lateral line ganglion neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endocardial cushion cell) AnnotationAssertion(Annotation( "PMID:18816864") "A mesenchymal cell of the endocardial cushion. These cells develop via an epithelial to mesenchymal transition when endocardial cells break cell-to-cell contacts and migrate into the cardiac jelly. Cells from this population form the heart septa and valves.") AnnotationAssertion(rdfs:label "endocardial cushion cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreatic endocrine cell) @@ -37632,13 +39184,17 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pancreatic endocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (noradrenergic neuron) AnnotationAssertion(Annotation( "GOC:dos") "A neuron that release noradrenaline (noriphinephrine) as a neurotransmitter.") AnnotationAssertion(rdfs:label "noradrenergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (open tracheal system tracheocyte) @@ -37646,6 +39202,8 @@ AnnotationAssertion(Annotation( "FBbt:00005038") AnnotationAssertion(rdfs:label "open tracheal system tracheocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (visual system neuron) @@ -37653,6 +39211,8 @@ AnnotationAssertion( "2017-07-09T19:12:36Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "visual system neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cortical interneuron) @@ -37661,6 +39221,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cortical interneuron"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (decidual pericyte) @@ -37671,7 +39233,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "decidual pericyte"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mural cell) @@ -37691,7 +39255,9 @@ AnnotationAssertion( "2020-02-29T17:37:00Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "microcirculation associated smooth muscle cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (alpha motor neuron) @@ -37710,8 +39276,7 @@ AnnotationAssertion( "2020-09-23T20:22:07Z"^^xsd:dateTime) AnnotationAssertion( "FMA:84632") AnnotationAssertion(rdfs:label "lower motor neuron"@en) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (extrafusal muscle fiber) @@ -37735,6 +39300,9 @@ AnnotationAssertion( "myofibra intrafusalis") AnnotationAssertion(rdfs:label "intrafusal muscle fiber"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sensory neuron of spinal nerve) @@ -37742,7 +39310,8 @@ AnnotationAssertion(Annotation( "spinal sensory neuron") AnnotationAssertion(rdfs:label "sensory neuron of spinal nerve") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (compound eye retinal cell) @@ -37751,6 +39320,8 @@ AnnotationAssertion( "PMID:12021768") AnnotationAssertion(rdfs:label "compound eye retinal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (retinal cell) @@ -37760,6 +39331,7 @@ AnnotationAssertion( "retinal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (enteroendocrine cell of small intestine) @@ -37770,6 +39342,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enteroendocrine cell of small intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (Peyer's patch lymphocyte) @@ -37780,6 +39354,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "Peyer's patch lymphocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intestinal crypt stem cell of large intestine) @@ -37793,6 +39369,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal crypt stem cell of large intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intestinal crypt stem cell of small intestine) @@ -37804,6 +39383,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal crypt stem cell of small intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymphocyte of large intestine lamina propria) @@ -37816,6 +39398,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "lymphocyte of large intestine lamina propria") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (nephrogenic zone cell) @@ -37826,6 +39410,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nephrogenic zone cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tuft cell of appendix) @@ -37837,6 +39423,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tuft cell of appendix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (stromal cell of lamina propria of large intestine) @@ -37845,6 +39433,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stromal cell of lamina propria of large intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stromal cell of lamina propria of small intestine) @@ -37854,6 +39444,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stromal cell of lamina propria of small intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesothelial cell of small intestine) @@ -37862,6 +39454,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesothelial cell of small intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (mesothelial cell of colon) @@ -37871,6 +39465,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesothelial cell of colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (intestinal crypt stem cell of appendix) @@ -37884,6 +39480,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal crypt stem cell of appendix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesothelial cell of appendix) @@ -37895,6 +39494,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesothelial cell of appendix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (enteroendocrine cell of appendix) @@ -37906,6 +39507,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enteroendocrine cell of appendix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (T cell of appendix) @@ -37918,6 +39521,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "T cell of appendix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B cell of appendix) @@ -37930,6 +39535,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "B cell of appendix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (plasma cell of appendix) @@ -37942,6 +39549,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "plasma cell of appendix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dendritic cell of appendix) @@ -37954,6 +39563,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "dendritic cell of appendix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stromal cell of lamina propria of vermiform appendix) @@ -37964,6 +39575,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stromal cell of lamina propria of vermiform appendix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (appendix macrophage) @@ -37976,6 +39589,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "appendix macrophage") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymph node mantle zone B cell) @@ -37987,6 +39602,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "lymph node mantle zone B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (colon macrophage) @@ -37998,6 +39615,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "colon macrophage") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (colon goblet cell) @@ -38008,6 +39627,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "colon goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (stromal cell of lamina propria of colon) @@ -38017,6 +39638,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stromal cell of lamina propria of colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tuft cell of colon) @@ -38027,6 +39650,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tuft cell of colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (enteroendocrine cell of colon) @@ -38037,6 +39662,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enteroendocrine cell of colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (intestinal crypt stem cell of colon) @@ -38046,6 +39673,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal crypt stem cell of colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (lymphocyte of small intestine lamina propria) @@ -38061,6 +39690,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "lymphocyte of small intestine lamina propria") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B cell of medullary sinus of lymph node) @@ -38070,6 +39701,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "B cell of medullary sinus of lymph node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (T cell of medullary sinus of lymph node) @@ -38079,6 +39712,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "T cell of medullary sinus of lymph node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (macrophage of medullary sinus of lymph node) @@ -38090,6 +39725,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "macrophage of medullary sinus of lymph node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (anorectum macrophage) @@ -38100,6 +39737,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "anorectum macrophage") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of high endothelial venule of lymph node) @@ -38110,6 +39749,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle cell of high endothelial venule of lymph node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (B cell of anorectum) @@ -38119,6 +39761,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "B cell of anorectum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (T cell of anorectum) @@ -38128,6 +39772,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "T cell of anorectum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of anorectum) @@ -38137,6 +39783,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle cell of anorectum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stromal cell of anorectum lamina propria) @@ -38145,6 +39793,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stromal cell of anorectum lamina propria") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (anorectum goblet cell) @@ -38154,6 +39804,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "anorectum goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (plasma cell of medullary sinus of lymph node) @@ -38166,6 +39818,8 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "plasma cell of medullary sinus of lymph node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (marginal zone B cell of lymph node) @@ -38176,6 +39830,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "marginal zone B cell of lymph node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intestinal crypt stem cell of anorectum) @@ -38185,6 +39841,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal crypt stem cell of anorectum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (enteroendocrine cell of anorectum) @@ -38194,6 +39853,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enteroendocrine cell of anorectum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymph node paracortex T cell) @@ -38205,6 +39867,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lymph node paracortex T cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tuft cell of anorectum) @@ -38214,6 +39878,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tuft cell of anorectum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stratified squamous epithelial cell of anal canal) @@ -38224,6 +39890,9 @@ AnnotationAssertion( "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label "stratified squamous epithelial cell of anal canal") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tuft cell of small intestine) @@ -38237,6 +39906,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tuft cell of small intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (epithelial cell of endometrial gland) @@ -38250,6 +39921,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of endometrial gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of respiratory system lymphatic vessel) @@ -38262,6 +39935,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endothelial cell of respiratory system lymphatic vessel") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung pericyte) @@ -38278,6 +39952,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lung pericyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Leydig stem cell) @@ -38287,6 +39963,7 @@ AnnotationAssertion( "stem Leydig cell") AnnotationAssertion(rdfs:label "Leydig stem cell") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of placenta) @@ -38300,6 +39977,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endothelial cell of placenta") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (smooth muscle cell of placenta) @@ -38311,6 +39990,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "smooth muscle cell of placenta") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of hepatic portal vein) @@ -38322,6 +40003,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endothelial cell of hepatic portal vein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of uterus) @@ -38334,6 +40017,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endothelial cell of uterus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (embryonic skeletal muscle fiber) @@ -38342,6 +40027,8 @@ AnnotationAssertion( "2022-02-21T15:39:10Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "embryonic skeletal muscle fiber") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fetal and neonatal skeletal muscle fiber) @@ -38350,6 +40037,9 @@ AnnotationAssertion( "2022-02-21T15:43:16Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "fetal and neonatal skeletal muscle fiber") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hepatic portal fibroblast) @@ -38361,6 +40051,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hepatic portal fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lymph node lymphatic vessel endothelial cell) @@ -38371,6 +40063,9 @@ AnnotationAssertion( "lymph node lymphatic vessel endothelial cell") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/cell-ontology/issues/1472") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (progenitor cell of mammary luminal epithelium) @@ -38390,6 +40085,8 @@ AnnotationAssertion( "bone marrow stromal cell") AnnotationAssertion(rdfs:label "stromal cell of bone marrow") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (epithelial cell of umbilical artery) @@ -38398,6 +40095,8 @@ AnnotationAssertion( "umbilical artery epithelial cell") AnnotationAssertion(rdfs:label "epithelial cell of umbilical artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of alveolus of lung) @@ -38409,6 +40108,8 @@ AnnotationAssertion( "May be merged with pneumocyte in future") AnnotationAssertion(rdfs:label "epithelial cell of alveolus of lung") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mononuclear cell of bone marrow) @@ -38417,6 +40118,8 @@ AnnotationAssertion( "bone marrow mononuclear cell") AnnotationAssertion(rdfs:label "mononuclear cell of bone marrow") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (atrioventricular bundle cell) @@ -38424,16 +40127,22 @@ AnnotationAssertion(Annotation( "AV bundle cell") AnnotationAssertion(rdfs:label "atrioventricular bundle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cardiac blood vessel endothelial cell) AnnotationAssertion(rdfs:label "cardiac blood vessel endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (His-Purkinje system cell) AnnotationAssertion(rdfs:label "His-Purkinje system cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cardiac endothelial cell) @@ -38442,17 +40151,25 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cardiac endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (camera-type eye photoreceptor cell) AnnotationAssertion( "camera type eye photoreceptor cell") AnnotationAssertion(rdfs:label "camera-type eye photoreceptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf(Annotation(rdfs:seeAlso "https://github.com/obophenotype/cell-ontology/issues/2245") ObjectSomeValuesFrom( )) # Class: (cerebellar stellate cell) AnnotationAssertion(rdfs:label "cerebellar stellate cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (cerebral cortex GABAergic interneuron) @@ -38460,6 +40177,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "cerebral cortex GABAergic interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (cerebral cortex neuron) @@ -38475,6 +40194,8 @@ AnnotationAssertion( "cerebral cortex neuron") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/cell-ontology/issues/1359") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (coronet cell) @@ -38495,12 +40216,17 @@ SubClassOf( "cardiac glial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cardiac myoblast) AnnotationAssertion( "MESH:D032386") AnnotationAssertion(rdfs:label "cardiac myoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cardiac neuron) @@ -38510,6 +40236,8 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "cardiac neuron") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/cell-ontology/pull/1488") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dorsal horn interneuron) @@ -38518,6 +40246,7 @@ AnnotationAssertion( "dorsal horn interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (spinal cord motor neuron) @@ -38525,6 +40254,8 @@ AnnotationAssertion(Annotation( "spinal cord motor neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (magnocellular neurosecretory cell) @@ -38534,8 +40265,7 @@ AnnotationAssertion( "magnocellular neuron") AnnotationAssertion(rdfs:label "magnocellular neurosecretory cell") SubClassOf( ) -SubClassOf( ) -SubClassOf( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lens fiber cell) @@ -38558,6 +40288,7 @@ AnnotationAssertion(rdfs:comment "Th AnnotationAssertion(rdfs:label "GABAergic interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) # Class: (paraxial cell) @@ -38568,6 +40299,7 @@ AnnotationAssertion( "paraxial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neural crest cell) @@ -38583,6 +40315,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "motile sperm cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (flagellated sperm cell) @@ -38591,6 +40326,7 @@ AnnotationAssertion( "flagellated sperm cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesothelial cell of epicardium) @@ -38600,6 +40336,8 @@ AnnotationAssertion( "mesothelial cell of epicardium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of upper back skin) @@ -38608,6 +40346,7 @@ AnnotationAssertion( "fibroblast of upper back skin") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of skin of back) @@ -38615,7 +40354,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "fibroblast of skin of back") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (progenitor cell) @@ -38625,6 +40365,7 @@ AnnotationAssertion( "progenitor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (skeletal muscle fibroblast) @@ -38634,7 +40375,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "skeletal muscle fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (dermal microvascular endothelial cell) @@ -38644,6 +40386,8 @@ AnnotationAssertion( "dermal microvascular endothelium cell") AnnotationAssertion(rdfs:label "dermal microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (chorionic trophoblast cell) @@ -38652,6 +40396,7 @@ AnnotationAssertion( "chorionic trophoblast cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sympathetic neuron) @@ -38669,6 +40414,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "colon epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (spiral ganglion neuron) @@ -38677,6 +40423,7 @@ AnnotationAssertion(Annotation( "spiral ganglion neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (precursor cell) @@ -38685,6 +40432,8 @@ AnnotationAssertion( "Work is needed on GO 'cell differentiation' before it is clear whether the equivalent class definition 'native cell' that capable_of some 'cell differentiation' works. Also, may want to consider merging this with non-terminally differentiated cell.") AnnotationAssertion(rdfs:label "precursor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (astrocyte of the forebrain) @@ -38696,6 +40445,8 @@ AnnotationAssertion( "astrocyte of the forebrain") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuron of the forebrain) @@ -38707,6 +40458,8 @@ AnnotationAssertion( "neuron of the forebrain") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (forebrain radial glial cell) @@ -38714,6 +40467,7 @@ AnnotationAssertion( "forebrain radial glial cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pulmonary ionocyte) @@ -38736,6 +40490,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "prostate neuroendocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of prostatic urethra) @@ -38743,6 +40499,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "epithelial cell of prostatic urethra") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neutrophillic cytoplasm) @@ -38751,6 +40509,8 @@ AnnotationAssertion( "2010-05-25T01:36:34Z") AnnotationAssertion(rdfs:label "neutrophillic cytoplasm") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (acidophilic cytoplasm) @@ -38760,6 +40520,8 @@ AnnotationAssertion( AnnotationAssertion( "eosinophilic") AnnotationAssertion(rdfs:label "acidophilic cytoplasm") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (basophilic cytoplasm) @@ -38769,6 +40531,7 @@ AnnotationAssertion( AnnotationAssertion(rdfs:label "basophilic cytoplasm") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (polychromatophilic cytoplasm) @@ -38777,6 +40540,8 @@ AnnotationAssertion( "2009-12-28T04:25:23Z") AnnotationAssertion(rdfs:label "polychromatophilic cytoplasm") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cartwheel heterochromatin) @@ -38796,6 +40561,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tracheobronchial serous cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tracheobronchial chondrocyte) @@ -38808,6 +40575,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tracheobronchial chondrocyte"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tracheobronchial goblet cell) @@ -38821,6 +40590,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tracheobronchial goblet cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (lymphatic vessel smooth muscle cell) @@ -38832,6 +40603,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lymphatic vessel smooth muscle cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (blood vessel smooth muscle cell) @@ -38843,6 +40616,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "blood vessel smooth muscle cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tracheobronchial smooth muscle cell) @@ -38855,6 +40630,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tracheobronchial smooth muscle cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (extrahepatic cholangiocyte) @@ -38864,6 +40641,8 @@ AnnotationAssertion( "PMID:23720296") "large bile duct cholangiocyte") AnnotationAssertion(rdfs:label "extrahepatic cholangiocyte"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of periportal hepatic sinusoid) @@ -38876,6 +40655,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "endothelial cell of periportal hepatic sinusoid"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of pericentral hepatic sinusoid) @@ -38888,6 +40669,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "endothelial cell of pericentral hepatic sinusoid"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (periportal region hepatocyte) @@ -38900,6 +40683,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "periportal region hepatocyte"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (midzonal region hepatocyte) @@ -38912,6 +40697,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "midzonal region hepatocyte"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (centrilobular region hepatocyte) @@ -38924,6 +40711,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "centrilobular region hepatocyte"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intestine goblet cell) @@ -38934,6 +40723,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "intestine goblet cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (intestinal tuft cell) @@ -38946,47 +40737,70 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intestinal tuft cell"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (retrotrapezoid nucleus neuron) AnnotationAssertion(rdfs:label "retrotrapezoid nucleus neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesonephric nephron tubule epithelial cell) AnnotationAssertion(rdfs:label "mesonephric nephron tubule epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (forebrain neuroblast) AnnotationAssertion(rdfs:label "forebrain neuroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lateral line nerve glial cell) AnnotationAssertion(rdfs:label "lateral line nerve glial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (spinal cord radial glial cell) AnnotationAssertion(rdfs:label "spinal cord radial glial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pronephric nephron tubule epithelial cell) AnnotationAssertion(rdfs:label "pronephric nephron tubule epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (metanephric nephron tubule epithelial cell) AnnotationAssertion(rdfs:label "metanephric nephron tubule epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung goblet cell) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lung goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (cardiac valve cell) @@ -38995,16 +40809,23 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "cardiac valve cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (growth plate cartilage chondrocyte) AnnotationAssertion(rdfs:label "growth plate cartilage chondrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stomach neuroendocrine cell) AnnotationAssertion(rdfs:label "stomach neuroendocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (lung neuroendocrine cell) @@ -39016,25 +40837,36 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lung neuroendocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (posterior lateral line nerve glial cell) AnnotationAssertion(rdfs:label "posterior lateral line nerve glial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (anterior lateral line nerve glial cell) AnnotationAssertion(rdfs:label "anterior lateral line nerve glial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (posterior lateral line ganglion neuron) AnnotationAssertion(rdfs:label "posterior lateral line ganglion neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung ciliated cell) @@ -39044,12 +40876,15 @@ AnnotationAssertion( "lung ciliated cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung secretory cell) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lung secretory cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (trophectodermal cell) @@ -39066,6 +40901,7 @@ AnnotationAssertion( "smooth muscle cell of small intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle fiber of duodenum) @@ -39075,6 +40911,7 @@ AnnotationAssertion(Annotation( "smooth muscle fiber of duodenum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle fiber of jejunum) @@ -39084,6 +40921,7 @@ AnnotationAssertion(Annotation( "smooth muscle fiber of jejunum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle fiber of ileum) @@ -39094,6 +40932,7 @@ AnnotationAssertion( "smooth muscle fiber of ileum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of large intestine) @@ -39106,6 +40945,7 @@ AnnotationAssertion( "smooth muscle cell of large intestine") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of colon) @@ -39114,7 +40954,8 @@ AnnotationAssertion( "FMA:15663") "non-striated muscle fiber of colon") AnnotationAssertion(rdfs:label "smooth muscle cell of colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of cecum) @@ -39124,7 +40965,8 @@ AnnotationAssertion(Annotation( "smooth muscle fiber of cecum") AnnotationAssertion(rdfs:label "smooth muscle cell of cecum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle fiber of ascending colon) @@ -39134,6 +40976,7 @@ AnnotationAssertion(Annotation( "smooth muscle fiber of ascending colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle fiber of transverse colon) @@ -39143,6 +40986,7 @@ AnnotationAssertion(Annotation( "smooth muscle fiber of transverse colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle fiber of descending colon) @@ -39152,6 +40996,7 @@ AnnotationAssertion(Annotation( "smooth muscle fiber of descending colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of sigmoid colon) @@ -39161,6 +41006,7 @@ AnnotationAssertion(Annotation( "smooth muscle cell of sigmoid colon") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of rectum) @@ -39170,7 +41016,8 @@ AnnotationAssertion(Annotation( "smooth muscle fiber of rectum") AnnotationAssertion(rdfs:label "smooth muscle cell of rectum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of urethra) @@ -39179,6 +41026,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of urethra") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (mesothelial cell of dura mater) @@ -39187,6 +41036,9 @@ AnnotationAssertion( "FMA:256516") "squamous mesothelial cell of dura mater") AnnotationAssertion(rdfs:label "mesothelial cell of dura mater") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of papillary layer of dermis) @@ -39195,6 +41047,7 @@ AnnotationAssertion( "fibroblast of papillary layer of dermis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of areolar connective tissue) @@ -39212,6 +41065,8 @@ AnnotationAssertion( "fibroblast of tunica adventitia of artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of dense regular elastic tissue) @@ -39221,6 +41076,7 @@ AnnotationAssertion(rdfs:label "fibr EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibrocyte of adventitia of ureter) @@ -39231,6 +41087,7 @@ AnnotationAssertion( "fibrocyte of adventitia of ureter") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (epicardial adipocyte) @@ -39243,6 +41100,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epicardial adipocyte") SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (adipocyte of epicardial fat of right ventricle) @@ -39253,7 +41111,7 @@ AnnotationAssertion(Annotation( "FMA:261297") "epicardial fat cell of right ventricle") AnnotationAssertion(rdfs:label "adipocyte of epicardial fat of right ventricle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (adipocyte of epicardial fat of left ventricle) @@ -39265,7 +41123,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "adipocyte of epicardial fat of left ventricle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (bronchial goblet cell) @@ -39276,7 +41134,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "bronchial goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ) # Class: (gastric goblet cell) @@ -39285,6 +41144,8 @@ AnnotationAssertion( "FMA:263035") "goblet cell of epithelium of stomach") AnnotationAssertion(rdfs:label "gastric goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (gastric cardiac gland goblet cell) @@ -39294,6 +41155,8 @@ AnnotationAssertion( "goblet cell of epithelium of gastric cardiac gland") AnnotationAssertion(rdfs:label "gastric cardiac gland goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (principal gastric gland goblet cell) @@ -39303,7 +41166,9 @@ AnnotationAssertion( "goblet cell of epithelium of principal gastric gland") AnnotationAssertion(rdfs:label "principal gastric gland goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (intestinal villus goblet cell) @@ -39312,6 +41177,7 @@ AnnotationAssertion( "goblet cell of epithelium of intestinal villus") AnnotationAssertion(rdfs:label "intestinal villus goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (large intestine goblet cell) @@ -39322,6 +41188,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "large intestine goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (large intestine crypt goblet cell) @@ -39332,6 +41200,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "large intestine crypt goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))) # Class: (pancreatic goblet cell) @@ -39344,6 +41213,8 @@ AnnotationAssertion( "pancreatic goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (pyloric gastric gland goblet cell) @@ -39353,6 +41224,8 @@ AnnotationAssertion( "goblet cell of epithelium of pyloric gland") AnnotationAssertion(rdfs:label "pyloric gastric gland goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (duodenal goblet cell) @@ -39364,7 +41237,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "duodenal goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ) # Class: (jejunal goblet cell) @@ -39375,6 +41249,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "jejunal goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (ileal goblet cell) @@ -39385,6 +41260,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ileal goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (appendix goblet cell) @@ -39394,7 +41270,8 @@ AnnotationAssertion( "goblet cell of epithelium proper of appendix") AnnotationAssertion(rdfs:label "appendix goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) +SubClassOf( ) +SubClassOf( ) # Class: (tracheal goblet cell) @@ -39406,6 +41283,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tracheal goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (serous cell of epithelium of trachea) @@ -39417,6 +41296,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "serous cell of epithelium of trachea") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (serous cell of epithelium of bronchus) @@ -39427,6 +41308,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "serous cell of epithelium of bronchus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (serous cell of epithelium of terminal bronchiole) @@ -39434,6 +41317,9 @@ AnnotationAssertion(Annotation( "FMA:263082") AnnotationAssertion(rdfs:label "serous cell of epithelium of terminal bronchiole") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (serous cell of epithelium of lobular bronchiole) @@ -39441,6 +41327,9 @@ AnnotationAssertion(Annotation( "FMA:263084") AnnotationAssertion(rdfs:label "serous cell of epithelium of lobular bronchiole") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (transitional myocyte of interatrial septum) @@ -39449,6 +41338,8 @@ AnnotationAssertion( "transitional myocyte of interatrial septum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (transitional myocyte of interventricular septum) @@ -39457,6 +41348,8 @@ AnnotationAssertion( "transitional myocyte of interventricular septum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (transitional myocyte of left branch of atrioventricular bundle) @@ -39483,6 +41376,8 @@ AnnotationAssertion( "Purkinje myocyte of interventricular septum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type 1 vestibular sensory cell of stato-acoustic epithelium) @@ -39490,6 +41385,8 @@ AnnotationAssertion(Annotation( "FMA:263186") AnnotationAssertion(rdfs:label "type 1 vestibular sensory cell of stato-acoustic epithelium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth) @@ -39497,6 +41394,7 @@ AnnotationAssertion(Annotation( "FMA:263188") AnnotationAssertion(rdfs:label "type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth) @@ -39505,6 +41403,8 @@ AnnotationAssertion(Annotation( "FMA:263190") AnnotationAssertion(rdfs:label "type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth) @@ -39513,6 +41413,8 @@ AnnotationAssertion(Annotation( "FMA:263192") AnnotationAssertion(rdfs:label "type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type 2 vestibular sensory cell of stato-acoustic epithelium) @@ -39520,6 +41422,8 @@ AnnotationAssertion(Annotation( "FMA:263194") AnnotationAssertion(rdfs:label "type 2 vestibular sensory cell of stato-acoustic epithelium") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth) @@ -39527,6 +41431,7 @@ AnnotationAssertion(Annotation( "FMA:263196") AnnotationAssertion(rdfs:label "type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth) @@ -39535,6 +41440,8 @@ AnnotationAssertion(Annotation( "FMA:263198") AnnotationAssertion(rdfs:label "type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth) @@ -39543,6 +41450,8 @@ AnnotationAssertion(Annotation( "FMA:263200") AnnotationAssertion(rdfs:label "type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (melanocyte of eyelid) @@ -39553,6 +41462,7 @@ AnnotationAssertion(Annotation( "melanocyte of eyelid") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of venous sinus of red pulp of spleen) @@ -39562,6 +41472,8 @@ AnnotationAssertion(rdfs:comment "to AnnotationAssertion(rdfs:label "endothelial cell of venous sinus of red pulp of spleen") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of hepatic sinusoid) @@ -39576,6 +41488,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endothelial cell of hepatic sinusoid") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of appendix) @@ -39585,6 +41499,8 @@ AnnotationAssertion(Annotation( "FMA:63602") "epithelial cell of vermiform appendix") AnnotationAssertion(rdfs:label "epithelial cell of appendix") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myocyte of sinoatrial node) @@ -39598,6 +41514,8 @@ AnnotationAssertion(Annotation( "myocyte of sinoatrial node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myocyte of atrioventricular node) @@ -39611,6 +41529,9 @@ AnnotationAssertion(Annotation( "myocyte of atrioventricular node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of Peyer's patch) @@ -39619,6 +41540,8 @@ AnnotationAssertion( "endothelial cell of Peyer's patch") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of arteriole) @@ -39630,6 +41553,7 @@ AnnotationAssertion( "endothelial cell of arteriole") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of artery) @@ -39656,6 +41580,7 @@ AnnotationAssertion( "endothelial cell of venule") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of gallbladder) @@ -39663,6 +41588,8 @@ AnnotationAssertion(Annotation( "FMA:67780") AnnotationAssertion(rdfs:label "epithelial cell of gallbladder") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myoepithelial cell of sweat gland) @@ -39673,6 +41600,7 @@ AnnotationAssertion( "myoepithelial cell of sweat gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (myoepithelial cell of lactiferous alveolus) @@ -39682,7 +41610,8 @@ AnnotationAssertion(Annotation( "FMA:67802") "myoepithelial cell of mammary alveolus") AnnotationAssertion(rdfs:label "myoepithelial cell of lactiferous alveolus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myoepithelial cell of lactiferous duct) @@ -39690,7 +41619,9 @@ AnnotationAssertion(Annotation( "FMA:67803") AnnotationAssertion(rdfs:label "myoepithelial cell of lactiferous duct") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (chromaffin cell of paraaortic body) @@ -39699,7 +41630,8 @@ AnnotationAssertion( "FMA:69328") "chromaffin cell of para-aortic body") AnnotationAssertion(rdfs:label "chromaffin cell of paraaortic body") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (chromaffin cell of paraganglion) @@ -39708,6 +41640,7 @@ AnnotationAssertion( "chromaffin cell of paraganglion") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (chromaffin cell of adrenal gland) @@ -39718,6 +41651,7 @@ AnnotationAssertion(rdfs:label "chro EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (adrenal cortex chromaffin cell) @@ -39727,7 +41661,8 @@ AnnotationAssertion( "Not clear this cell type exists. Can't call it a cortical adrenal cell because of different germ layer origin.") AnnotationAssertion(rdfs:label "adrenal cortex chromaffin cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) # Class: (stem cell of epidermis) @@ -39738,6 +41673,7 @@ AnnotationAssertion( "stem cell of epidermis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (conjunctival epithelial cell) @@ -39749,6 +41685,7 @@ AnnotationAssertion( "conjunctival epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of lacrimal canaliculus) @@ -39756,6 +41693,8 @@ AnnotationAssertion(Annotation( "FMA:70553") AnnotationAssertion(rdfs:label "epithelial cell of lacrimal canaliculus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of external acoustic meatus) @@ -39763,6 +41702,8 @@ AnnotationAssertion(Annotation( "FMA:70555") AnnotationAssertion(rdfs:label "epithelial cell of external acoustic meatus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of lacrimal drainage system) @@ -39772,6 +41713,7 @@ AnnotationAssertion( "epithelial cell of lacrimal drainage system") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of lacrimal sac) @@ -39780,6 +41722,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of lacrimal sac") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of nasolacrimal duct) @@ -39787,7 +41731,8 @@ AnnotationAssertion(Annotation( "FMA:70561") AnnotationAssertion(rdfs:label "epithelial cell of nasolacrimal duct") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (urothelial cell of trigone of urinary bladder) @@ -39796,6 +41741,8 @@ AnnotationAssertion( "FMA:70598") "epithelial cell of vesical trigone") AnnotationAssertion(rdfs:label "urothelial cell of trigone of urinary bladder") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) # Class: (ciliary muscle cell) @@ -39807,6 +41754,7 @@ AnnotationAssertion( "ciliary muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesothelial cell of anterior chamber of eye) @@ -39814,6 +41762,8 @@ AnnotationAssertion(Annotation( "FMA:70615") AnnotationAssertion(rdfs:label "mesothelial cell of anterior chamber of eye") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myoepithelial cell of dilator pupillae) @@ -39822,6 +41772,7 @@ AnnotationAssertion( "myoepithelial cell of dilator pupillae") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of stratum germinativum of esophagus) @@ -39832,6 +41783,7 @@ AnnotationAssertion( "epithelial cell of stratum germinativum of esophagus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of sweat gland) @@ -39840,6 +41792,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of sweat gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of nephron) @@ -39848,6 +41803,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of nephron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of glomerular capsule) @@ -39861,7 +41818,7 @@ AnnotationAssertion( "epithelial cell of glomerular capsule") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (parietal epithelial cell) @@ -39874,7 +41831,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "parietal epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of intermediate tubule) @@ -39882,6 +41840,8 @@ AnnotationAssertion(Annotation( "FMA:70980") AnnotationAssertion(rdfs:label "epithelial cell of intermediate tubule") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney collecting duct epithelial cell) @@ -39896,7 +41856,7 @@ AnnotationAssertion( "kidney collecting duct epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf(Annotation( "true") ) # Class: (mesothelial cell of parietal peritoneum) @@ -39905,6 +41865,8 @@ AnnotationAssertion(Annotation( "FMA:72142") AnnotationAssertion(rdfs:label "mesothelial cell of parietal peritoneum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesothelial cell of visceral peritoneum) @@ -39914,6 +41876,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesothelial cell of visceral peritoneum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (melanocyte of skin) @@ -39927,6 +41891,7 @@ AnnotationAssertion( "melanocyte of skin") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (chromaffin cell of ovary) @@ -39935,6 +41900,7 @@ AnnotationAssertion( "chromaffin cell of ovary") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (chromaffin cell of right ovary) @@ -39942,7 +41908,8 @@ AnnotationAssertion(Annotation( "FMA:74320") AnnotationAssertion(rdfs:label "chromaffin cell of right ovary") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (chromaffin cell of left ovary) @@ -39950,7 +41917,8 @@ AnnotationAssertion(Annotation( "FMA:74321") AnnotationAssertion(rdfs:label "chromaffin cell of left ovary") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (transitional myocyte of sinoatrial node) @@ -39960,6 +41928,7 @@ AnnotationAssertion( "transitional myocyte of sinoatrial node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (Purkinje myocyte of atrioventricular node) @@ -39968,6 +41937,7 @@ AnnotationAssertion( "Purkinje myocyte of atrioventricular node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (transitional myocyte of internodal tract) @@ -39976,6 +41946,7 @@ AnnotationAssertion( "transitional myocyte of internodal tract") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (transitional myocyte of atrioventricular bundle) @@ -39984,6 +41955,9 @@ AnnotationAssertion( "transitional myocyte of atrioventricular bundle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (myocardial endocrine cell of interventricular septum) @@ -39992,6 +41966,8 @@ AnnotationAssertion( "myocardial endocrine cell of interventricular septum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (Purkinje myocyte of internodal tract) @@ -40000,6 +41976,7 @@ AnnotationAssertion( "Purkinje myocyte of internodal tract") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (Purkinje myocyte of atrioventricular bundle) @@ -40008,6 +41985,9 @@ AnnotationAssertion( "Purkinje myocyte of atrioventricular bundle") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (basal cell of urothelium) @@ -40033,6 +42013,7 @@ AnnotationAssertion( "smooth muscle cell of prostate") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cholangiocyte) @@ -40043,6 +42024,7 @@ AnnotationAssertion( "cholangiocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) @@ -40055,6 +42037,8 @@ AnnotationAssertion( "reticular cell of splenic cord") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesothelial cell of peritoneum) @@ -40063,6 +42047,8 @@ AnnotationAssertion( "FMA:86736") "peritoneal mesothelial cell") AnnotationAssertion(rdfs:label "mesothelial cell of peritoneum") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesothelial cell of pleura) @@ -40072,6 +42058,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "mesothelial cell of pleura") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesothelial cell of parietal pleura) @@ -40079,6 +42067,8 @@ AnnotationAssertion(Annotation( "FMA:86738") AnnotationAssertion(rdfs:label "mesothelial cell of parietal pleura") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesothelial cell of visceral pleura) @@ -40089,6 +42079,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mesothelial cell of visceral pleura") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (nephron tubule epithelial cell) @@ -40100,6 +42093,9 @@ AnnotationAssertion( "This needs to be further defined as a juxtamedullary nephron. Will request the juxtamedullary nephron tubule class from UBERON.") AnnotationAssertion(rdfs:label "nephron tubule epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (small intestine goblet cell) @@ -40111,7 +42107,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "small intestine goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ) # Class: (kidney cell) @@ -40120,6 +42117,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney interstitial cell) @@ -40129,13 +42128,18 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney interstitial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney medulla cell) -AnnotationAssertion( "A cell that is part of a renal medulla.") +AnnotationAssertion(Annotation( "PMID:22343825") "A cell that is part of a renal medulla.") AnnotationAssertion( "KUPO:0001017") AnnotationAssertion(rdfs:label "kidney medulla cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney pelvis cell) @@ -40144,6 +42148,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney pelvis cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney tubule cell) @@ -40152,6 +42158,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney tubule cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney glomerular epithelial cell) @@ -40159,7 +42167,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney glomerular epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney medulla collecting duct epithelial cell) @@ -40169,6 +42177,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney medulla collecting duct epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney inner medulla collecting duct epithelial cell) @@ -40177,6 +42188,8 @@ AnnotationAssertion( "kidney inner medulla collecting duct epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney outer medulla collecting duct epithelial cell) @@ -40185,6 +42198,8 @@ AnnotationAssertion( "kidney outer medulla collecting duct epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney cortex collecting duct epithelial cell) @@ -40192,6 +42207,9 @@ AnnotationAssertion( "KUPO:0001063") AnnotationAssertion(rdfs:label "kidney cortex collecting duct epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney papillary duct principal epithelial cell) @@ -40199,7 +42217,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney papillary duct principal epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (inner renal cortex cell) @@ -40207,7 +42225,7 @@ SubClassOf( ObjectSomeValuesFrom( "KUPO:0001111") AnnotationAssertion(rdfs:label "inner renal cortex cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (papillary tips cell) @@ -40219,7 +42237,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "papillary tips cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lower urinary tract cell) @@ -40227,6 +42246,7 @@ SubClassOf( ObjectSomeValuesFrom( "KUPO:0001115") AnnotationAssertion(rdfs:label "lower urinary tract cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (ureteral cell) @@ -40234,6 +42254,7 @@ SubClassOf( ObjectSomeValuesFrom( "KUPO:0001116") AnnotationAssertion(rdfs:label "ureteral cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney nerve cell) @@ -40243,6 +42264,7 @@ AnnotationAssertion(rdfs:label "kidn EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney corpuscule cell) @@ -40251,6 +42273,7 @@ AnnotationAssertion( "kidney corpuscule cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney cortex tubule cell) @@ -40260,6 +42283,7 @@ AnnotationAssertion( "kidney cortex tubule cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40291,6 +42315,7 @@ SubClassOf( ObjectSomeValuesFrom( (kidney cortex interstitial cell) +AnnotationAssertion(Annotation( "PMID:18575881") "A cell that is part of an interstitial compartment of a renal cortex.") AnnotationAssertion( "KUPO:0001091") AnnotationAssertion(rdfs:label "kidney cortex interstitial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -40300,6 +42325,7 @@ SubClassOf( ObjectSomeValuesFrom( (kidney medulla interstitial cell) +AnnotationAssertion(Annotation( "PMID:21359760") "A cell that is part of an interstitum of a renal medulla.") AnnotationAssertion( "KUPO:0001092") AnnotationAssertion(rdfs:label "kidney medulla interstitial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -40309,12 +42335,15 @@ SubClassOf( ObjectSomeValuesFrom( (kidney interstitial fibroblast) +AnnotationAssertion(Annotation( "PMID:10559635") "A fibroblast that is part of an interstitial compartment of a kidney.") AnnotationAssertion( ) AnnotationAssertion( "KUPO:0001102") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney interstitial fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (kidney pelvis smooth muscle cell) @@ -40364,9 +42393,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney cortex collecting duct principal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (kidney outer medulla collecting duct principal cell) @@ -40376,9 +42404,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney outer medulla collecting duct principal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (kidney inner medulla collecting duct principal cell) @@ -40387,25 +42414,22 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney inner medulla collecting duct principal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (kidney papillary duct principal cell) AnnotationAssertion( "KUPO:0001137") AnnotationAssertion(rdfs:label "kidney papillary duct principal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) # Class: (glomerular cell) AnnotationAssertion( "KUPO:0001036") AnnotationAssertion(rdfs:label "glomerular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40424,6 +42448,7 @@ SubClassOf( ObjectSomeValuesFrom( (kidney inner medulla interstitial cell) +AnnotationAssertion(Annotation( "PMID:21359760") "A cell that is part of an interstitial compartment of an inner renal medulla.") AnnotationAssertion( "KUPO:0001093") AnnotationAssertion(rdfs:label "kidney inner medulla interstitial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -40433,6 +42458,7 @@ SubClassOf( ObjectSomeValuesFrom( (kidney outer medulla interstitial cell) +AnnotationAssertion(Annotation( "PMID:8694267") "A kidney cell that is part of an interstitial compartment of an outer renal medulla.") AnnotationAssertion( "KUPO:0001094") AnnotationAssertion(rdfs:label "kidney outer medulla interstitial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -40447,7 +42473,6 @@ AnnotationAssertion( "kidney proximal convoluted tubule epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney proximal straight tubule epithelial cell) @@ -40457,8 +42482,8 @@ AnnotationAssertion( "kidney proximal straight tubule epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney distal convoluted tubule epithelial cell) @@ -40482,15 +42507,15 @@ AnnotationAssertion( "macula densa epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney blood vessel cell) +AnnotationAssertion(Annotation( "PMID:34843404") "A blood vessel cell that is part of a kidney.") AnnotationAssertion( "KUPO:0001014") AnnotationAssertion(rdfs:label "kidney blood vessel cell") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40514,6 +42539,7 @@ AnnotationAssertion(rdfs:label "kidn EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney venous blood vessel cell) @@ -40550,7 +42576,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "glomerular capillary endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40559,7 +42587,7 @@ SubClassOf( ObjectSomeValuesFrom( "KUPO:0001038") AnnotationAssertion(rdfs:label "kidney afferent arteriole cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40568,7 +42596,7 @@ SubClassOf( ObjectSomeValuesFrom( "KUPO:0001041") AnnotationAssertion(rdfs:label "kidney efferent arteriole cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40579,6 +42607,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney loop of Henle ascending limb epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40600,17 +42629,19 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peritubular capillary endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) -SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (vasa recta cell) +AnnotationAssertion(Annotation( "PMID:12529271") Annotation( "PMID:24381184") "A cell that is part of a vasa recta.") AnnotationAssertion( "KUPO:0001068") AnnotationAssertion(rdfs:label "vasa recta cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney cortex artery cell) @@ -40619,7 +42650,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney cortex artery cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40628,7 +42658,6 @@ SubClassOf( ObjectSomeValuesFrom( "KUPO:0001084") AnnotationAssertion(rdfs:label "kidney cortex vein cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40637,7 +42666,8 @@ SubClassOf( ObjectSomeValuesFrom( "KUPO:0001096") AnnotationAssertion(rdfs:comment "Note that the source of this term is KUPO:0001096 (artery smooth muscle cell), which we believe actually denotes the kidney specific structure.") AnnotationAssertion(rdfs:label "kidney artery smooth muscle cell") -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (kidney arteriole smooth muscle cell) @@ -40645,7 +42675,8 @@ SubClassOf( "KUPO:0001098") AnnotationAssertion(rdfs:comment "Note that the source of this term is KUPO:0001098 (arteriole smooth muscle cell), which we believe actually denotes the kidney specific structure.") AnnotationAssertion(rdfs:label "kidney arteriole smooth muscle cell") -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (kidney venous system smooth muscle cell) @@ -40653,7 +42684,8 @@ SubClassOf( "KUPO:0001100") AnnotationAssertion(rdfs:comment "Note that the source of this term is KUPO:0001068 (venous system smooth muscle cell), which we believe actually denotes the kidney specific structure.") AnnotationAssertion(rdfs:label "kidney venous system smooth muscle cell") -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) # Class: (kidney afferent arteriole endothelial cell) @@ -40664,8 +42696,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney afferent arteriole endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ) # Class: (kidney afferent arteriole smooth muscle cell) @@ -40673,7 +42705,7 @@ SubClassOf( "KUPO:0001040") AnnotationAssertion(rdfs:label "kidney afferent arteriole smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -40685,7 +42717,6 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney efferent arteriole endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) SubClassOf( ) @@ -40694,7 +42725,7 @@ SubClassOf( "KUPO:0001043") AnnotationAssertion(rdfs:label "kidney efferent arteriole smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -40708,7 +42739,6 @@ AnnotationAssertion( "kidney loop of Henle thick ascending limb epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40721,6 +42751,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney loop of Henle thin ascending limb epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40734,7 +42765,7 @@ AnnotationAssertion( "kidney loop of Henle medullary thick ascending limb epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney loop of Henle cortical thick ascending limb epithelial cell) @@ -40746,8 +42777,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney loop of Henle cortical thick ascending limb epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney loop of Henle thin descending limb epithelial cell) @@ -40759,6 +42789,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney loop of Henle thin descending limb epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40777,7 +42808,6 @@ SubClassOf( ObjectSomeValuesFrom( "KUPO:0001067") AnnotationAssertion(rdfs:label "kidney cortex peritubular capillary cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) SubClassOf( ObjectSomeValuesFrom( )) @@ -40867,7 +42897,6 @@ SubClassOf( ObjectSomeValuesFrom( "KUPO:0001079") AnnotationAssertion(rdfs:label "arcuate artery endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf(Annotation( "true") ) SubClassOf( ) @@ -40876,7 +42905,6 @@ SubClassOf( "KUPO:0001080") AnnotationAssertion(rdfs:label "arcuate artery smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf( ) SubClassOf( ) @@ -40885,7 +42913,6 @@ SubClassOf( "KUPO:0001082") AnnotationAssertion(rdfs:label "interlobulary artery endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -40894,7 +42921,6 @@ SubClassOf( "KUPO:0001083") AnnotationAssertion(rdfs:label "interlobulary artery smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf( ) SubClassOf( ) @@ -40903,7 +42929,6 @@ SubClassOf( "KUPO:0001086") AnnotationAssertion(rdfs:label "arcuate vein endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -40912,7 +42937,6 @@ SubClassOf( "KUPO:0001087") AnnotationAssertion(rdfs:label "arcuate vein smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf( ) SubClassOf( ) @@ -40921,7 +42945,6 @@ SubClassOf( "KUPO:0001089") AnnotationAssertion(rdfs:label "interlobulary vein endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) SubClassOf( ) SubClassOf( ) @@ -40930,7 +42953,6 @@ SubClassOf( "KUPO:0001090") AnnotationAssertion(rdfs:label "interlobulary vein smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf(Annotation( "true") ) SubClassOf( ) SubClassOf( ) @@ -40942,6 +42964,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney collecting duct cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vasa recta descending limb cell) @@ -40984,6 +43008,7 @@ AnnotationAssertion( "renal interstitial pericyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) +SubClassOf( ) # Class: (bladder cell) @@ -40993,6 +43018,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bladder cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (urethra cell) @@ -41000,6 +43026,7 @@ SubClassOf( ObjectSomeValuesFrom( "KUPO:0001123") AnnotationAssertion(rdfs:label "urethra cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (bladder urothelial cell) @@ -41014,6 +43041,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bladder urothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (urethra urothelial cell) @@ -41022,7 +43052,7 @@ AnnotationAssertion( "urethra urothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) -SubClassOf(Annotation( "true") ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney collecting duct principal cell) @@ -41035,7 +43065,6 @@ AnnotationAssertion(rdfs:label "kidn EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf(Annotation( "true") ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of exocrine pancreas) @@ -41047,6 +43076,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "epithelial cell of exocrine pancreas") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (olfactory bulb interneuron) @@ -41054,7 +43085,9 @@ AnnotationAssertion(Annotation( "olfactory bulb interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sensory neuron of dorsal root ganglion) @@ -41062,8 +43095,10 @@ AnnotationAssertion(Annotation( "MP:0004297") "proprioceptive neuron") AnnotationAssertion(rdfs:label "sensory neuron of dorsal root ganglion") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mitral cell) @@ -41085,7 +43120,9 @@ AnnotationAssertion(Annotation( "parvocellular neuron") AnnotationAssertion( "parvocellular neurosecretory neuron") AnnotationAssertion(rdfs:label "parvocellular neurosecretory cell") -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -41095,12 +43132,17 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "intestinal enteroendocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (stomach enteroendocrine cell) AnnotationAssertion(Annotation( "MP:0010803") "The various hormone- or neurotransmitter-secreting cells present throughout the mucosa of the stomach.") AnnotationAssertion(rdfs:label "stomach enteroendocrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung endothelial cell) @@ -41108,6 +43150,8 @@ AnnotationAssertion( "pulmonary vessel endothelial cell") AnnotationAssertion(rdfs:label "lung endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (pulmonary artery endothelial cell) @@ -41119,6 +43163,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pulmonary artery endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (hippocampal interneuron) @@ -41127,6 +43172,8 @@ AnnotationAssertion(Annotation( "FMA:84777") AnnotationAssertion(rdfs:label "hippocampal interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (hippocampal pyramidal neuron) @@ -41137,6 +43184,8 @@ AnnotationAssertion(Annotation( "NIFSTD:sao131261273") "hippocampus (CA) pyramidal neuron") AnnotationAssertion(rdfs:label "hippocampal pyramidal neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (colon endothelial cell) @@ -41147,6 +43196,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-2397") "colonic endothelial cell") AnnotationAssertion(rdfs:label "colon endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (nasopharyngeal epithelial cell) @@ -41156,7 +43207,8 @@ AnnotationAssertion( "CALOHA:TS-2398") "nasopharynx respiratory epithelial cells") AnnotationAssertion(rdfs:label "nasopharyngeal epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (uterine cervix squamous cell) @@ -41170,7 +43222,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1251") "uterine cervix squamous epithelial cells") AnnotationAssertion(rdfs:label "uterine cervix squamous cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ) # Class: (oral mucosa squamous cell) @@ -41182,6 +43235,9 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1252") "oral mucosa squamous epithelial cells") AnnotationAssertion(rdfs:label "oral mucosa squamous cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tonsil squamous cell) @@ -41195,6 +43251,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "tonsil squamous cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (vagina squamous cell) @@ -41207,6 +43265,7 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1254") "vaginal squamous epithelial cell") AnnotationAssertion(rdfs:label "vagina squamous cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebral cortex glial cell) @@ -41218,6 +43277,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1256") "cerebrum cortex glial cell") AnnotationAssertion(rdfs:label "cerebral cortex glial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hippocampal glial cell) @@ -41227,6 +43288,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1257") "hippocampus neuroglial cell") AnnotationAssertion(rdfs:label "hippocampal glial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lateral ventricle glial cell) @@ -41235,6 +43298,8 @@ AnnotationAssertion( "CALOHA:TS-1258") "lateral ventricle glial cells") AnnotationAssertion(rdfs:label "lateral ventricle glial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lateral ventricle neuron) @@ -41245,6 +43310,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1261") "lateral ventricle neuronal cells") AnnotationAssertion(rdfs:label "lateral ventricle neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (appendix glandular cell) @@ -41256,6 +43323,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1271") "vermiform appendix glandular cell") AnnotationAssertion(rdfs:label "appendix glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (mammary gland glandular cell) @@ -41267,6 +43336,9 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1272") "mammary glandular cell") AnnotationAssertion(rdfs:label "mammary gland glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (uterine cervix glandular cell) @@ -41278,7 +43350,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1273") "cervix, uterine glandular cells") AnnotationAssertion(rdfs:label "uterine cervix glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ) # Class: (colon glandular cell) @@ -41287,7 +43360,8 @@ AnnotationAssertion( "CALOHA:TS-1274") "colon glandular cells") AnnotationAssertion(rdfs:label "colon glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ) # Class: (duodenum glandular cell) @@ -41297,6 +43371,7 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "duodenum glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (epididymis glandular cell) @@ -41307,6 +43382,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1276") "epididymis glandular cells") AnnotationAssertion(rdfs:label "epididymis glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (oviduct glandular cell) @@ -41318,6 +43395,7 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1277") "uterine tube glandular cell") AnnotationAssertion(rdfs:label "oviduct glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (gallbladder glandular cell) @@ -41329,6 +43407,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1278") "gallbladder glandular cells") AnnotationAssertion(rdfs:label "gallbladder glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (parathyroid glandular cell) @@ -41339,6 +43419,7 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1279") "parathyroid gland glandular cells") AnnotationAssertion(rdfs:label "parathyroid glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (rectum glandular cell) @@ -41349,6 +43430,7 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1281") "rectum glandular cells") AnnotationAssertion(rdfs:label "rectum glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (salivary gland glandular cell) @@ -41358,6 +43440,9 @@ AnnotationAssertion( "CALOHA:TS-1282") "salivary gland glandular cells") AnnotationAssertion(rdfs:label "salivary gland glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (seminal vesicle glandular cell) @@ -41368,6 +43453,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "seminal vesicle glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (small intestine glandular cell) @@ -41380,6 +43467,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-1286") "small intestine glandular cells") AnnotationAssertion(rdfs:label "small intestine glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (pancreas exocrine glandular cell) @@ -41393,6 +43482,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "pancreas exocrine glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (adrenal gland glandular cell) @@ -41404,6 +43496,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-2177") "suprarenal gland glandular cell") AnnotationAssertion(rdfs:label "adrenal gland glandular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebral cortex endothelial cell) @@ -41414,6 +43508,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "cerebral cortex endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung macrophage) @@ -41424,6 +43521,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "lung macrophage") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (foreskin keratinocyte) @@ -41431,6 +43530,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-0385") AnnotationAssertion(rdfs:label "foreskin keratinocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (articular chondrocyte) @@ -41440,6 +43541,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "articular chondrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (foreskin fibroblast) @@ -41448,6 +43551,8 @@ AnnotationAssertion( "BJ fibroblast") AnnotationAssertion(rdfs:label "foreskin fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (muscle fibroblast) @@ -41455,6 +43560,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-0643") AnnotationAssertion(rdfs:label "muscle fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (bone marrow hematopoietic cell) @@ -41464,6 +43571,8 @@ AnnotationAssertion(Annotation( "CALOHA:TS-2109") "bone marrow poietic cells") AnnotationAssertion(rdfs:label "bone marrow hematopoietic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebellar neuron) @@ -41474,6 +43583,8 @@ AnnotationAssertion( "CALOHA:TS-2359") "cerebellum neuron") AnnotationAssertion(rdfs:label "cerebellar neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epidermal melanocyte) @@ -41484,6 +43595,9 @@ AnnotationAssertion( "These cells are found primarily, but not exclusively, in primates including humans") AnnotationAssertion(rdfs:label "epidermal melanocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (peripheral blood mononuclear cell) @@ -41494,6 +43608,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peripheral blood mononuclear cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (decidual cell) @@ -41507,6 +43624,7 @@ AnnotationAssertion(Annotation( "CL:2000002") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "decidual cell") +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -41520,6 +43638,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pituitary gland cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (brain macroglial cell) @@ -41529,6 +43649,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000005") AnnotationAssertion(rdfs:label "brain macroglial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (tonsil germinal center B cell) @@ -41539,6 +43661,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tonsil germinal center B cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (articular chondrocyte of knee joint) @@ -41548,6 +43672,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000007") AnnotationAssertion(rdfs:label "articular chondrocyte of knee joint") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (microvascular endothelial cell) @@ -41557,6 +43683,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000008") AnnotationAssertion(rdfs:label "microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dermis blood vessel endothelial cell) @@ -41566,6 +43694,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000010") AnnotationAssertion(rdfs:label "dermis blood vessel endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dermis lymphatic vessel endothelial cell) @@ -41575,6 +43705,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000011") AnnotationAssertion(rdfs:label "dermis lymphatic vessel endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of pedal digit skin) @@ -41584,6 +43716,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000012") AnnotationAssertion(rdfs:label "fibroblast of pedal digit skin") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of skin of abdomen) @@ -41593,6 +43727,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000013") AnnotationAssertion(rdfs:label "fibroblast of skin of abdomen") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of upper leg skin) @@ -41602,6 +43738,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000014") AnnotationAssertion(rdfs:label "fibroblast of upper leg skin") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of arm) @@ -41611,6 +43749,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000015") AnnotationAssertion(rdfs:label "fibroblast of arm") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung microvascular endothelial cell) @@ -41621,6 +43761,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lung microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) # Class: (fibroblast of peridontal ligament) @@ -41631,6 +43772,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000017") AnnotationAssertion(rdfs:label "fibroblast of peridontal ligament") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of coronary artery) @@ -41641,6 +43784,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endothelial cell of coronary artery") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (compound eye photoreceptor cell) @@ -41651,6 +43797,8 @@ AnnotationAssertion( "CL:2000019") AnnotationAssertion(rdfs:label "compound eye photoreceptor cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (inner cell mass cell) @@ -41660,6 +43808,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000020") AnnotationAssertion(rdfs:label "inner cell mass cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sebaceous gland cell) @@ -41670,6 +43820,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sebaceous gland cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cardiac septum cell) @@ -41679,6 +43831,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000022") AnnotationAssertion(rdfs:label "cardiac septum cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (spinal cord ventral column interneuron) @@ -41688,6 +43842,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000023") AnnotationAssertion(rdfs:label "spinal cord ventral column interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (spinal cord medial motor column neuron) @@ -41697,6 +43853,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000024") AnnotationAssertion(rdfs:label "spinal cord medial motor column neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (spinal cord oligodendrocyte) @@ -41706,6 +43864,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000025") AnnotationAssertion(rdfs:label "spinal cord oligodendrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebellum basket cell) @@ -41715,6 +43875,9 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000027") AnnotationAssertion(rdfs:label "cerebellum basket cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (cerebellum glutamatergic neuron) @@ -41724,6 +43887,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000028") AnnotationAssertion(rdfs:label "cerebellum glutamatergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (central nervous system neuron) @@ -41733,6 +43898,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000029") AnnotationAssertion(rdfs:label "central nervous system neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hypothalamus cell) @@ -41742,6 +43909,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000030") AnnotationAssertion(rdfs:label "hypothalamus cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lateral line ganglion neuron) @@ -41751,6 +43920,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000031") AnnotationAssertion(rdfs:label "lateral line ganglion neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (peripheral nervous system neuron) @@ -41764,6 +43935,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peripheral nervous system neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (limb basal cell of epidermis) @@ -41773,6 +43946,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000033") AnnotationAssertion(rdfs:label "limb basal cell of epidermis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (anterior lateral line neuromast hair cell) @@ -41782,6 +43957,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000034") AnnotationAssertion(rdfs:label "anterior lateral line neuromast hair cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (posterior lateral line neuromast hair cell) @@ -41791,6 +43968,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000037") AnnotationAssertion(rdfs:label "posterior lateral line neuromast hair cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (bladder microvascular endothelial cell) @@ -41802,6 +43981,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bladder microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (dermis microvascular lymphatic vessel endothelial cell) @@ -41812,6 +43993,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dermis microvascular lymphatic vessel endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (embryonic fibroblast) @@ -41822,6 +44005,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "embryonic fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (brain pericyte) @@ -41832,6 +44017,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brain pericyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (brain microvascular endothelial cell) @@ -41841,6 +44028,9 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000044") AnnotationAssertion(rdfs:label "brain microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (foreskin melanocyte) @@ -41850,6 +44040,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000045") AnnotationAssertion(rdfs:label "foreskin melanocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ventricular cardiac muscle cell) @@ -41860,6 +44052,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ventricular cardiac muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (brainstem motor neuron) @@ -41869,6 +44063,9 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000047") AnnotationAssertion(rdfs:label "brainstem motor neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (primary motor cortex pyramidal cell) @@ -41879,6 +44076,8 @@ AnnotationAssertion( "http://www.ncbi.nlm.nih.gov/pubmed/12524689") AnnotationAssertion(rdfs:label "primary motor cortex pyramidal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (splenic fibroblast) @@ -41888,6 +44087,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000051") AnnotationAssertion(rdfs:label "splenic fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (umbilical artery endothelial cell) @@ -41898,6 +44099,9 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=8010") AnnotationAssertion(rdfs:label "umbilical artery endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (splenic endothelial cell) @@ -41910,6 +44114,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=5500") AnnotationAssertion(rdfs:label "splenic endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (liver dendritic cell) @@ -41922,6 +44128,8 @@ AnnotationAssertion( "http://www.jleukbio.org/content/66/2/322.abstract") AnnotationAssertion(rdfs:label "liver dendritic cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (femural osteoblast) @@ -41932,6 +44140,9 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=4610") AnnotationAssertion(rdfs:label "femural osteoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (calvarial osteoblast) @@ -41942,6 +44153,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=4600") AnnotationAssertion(rdfs:label "calvarial osteoblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (prostate gland microvascular endothelial cell) @@ -41953,6 +44166,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=4400") AnnotationAssertion(rdfs:label "prostate gland microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (placental villous trophoblast) @@ -41969,6 +44184,8 @@ AnnotationAssertion(rdfs:comment "Sa AnnotationAssertion(rdfs:label "placental villous trophoblast") AnnotationAssertion(rdfs:seeAlso "http://www.sciencellonline.com/site/productInformation.php?keyword=7120") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (placental amniotic mesenchymal stromal cell) @@ -41981,6 +44198,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=7140") AnnotationAssertion(rdfs:label "placental amniotic mesenchymal stromal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (placental villus capillary endothelial cell) @@ -41991,6 +44210,9 @@ AnnotationAssertion( "http://www.ncbi.nlm.nih.gov/books/NBK53245/") AnnotationAssertion(rdfs:label "placental villus capillary endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ovarian fibroblast) @@ -42001,6 +44223,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=7330") AnnotationAssertion(rdfs:label "ovarian fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ovarian surface epithelial cell) @@ -42012,6 +44236,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=7310") AnnotationAssertion(rdfs:label "ovarian surface epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ovarian microvascular endothelial cell) @@ -42022,6 +44248,9 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=7300") AnnotationAssertion(rdfs:label "ovarian microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cardiac ventricle fibroblast) @@ -42034,6 +44263,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=6310") AnnotationAssertion(rdfs:label "cardiac ventricle fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cardiac atrium fibroblast) @@ -42046,6 +44277,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=6320") AnnotationAssertion(rdfs:label "cardiac atrium fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pericardium fibroblast) @@ -42056,6 +44289,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=6430") AnnotationAssertion(rdfs:label "pericardium fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (gallbladder fibroblast) @@ -42066,6 +44301,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=5430") AnnotationAssertion(rdfs:label "gallbladder fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (optic choroid fibroblast) @@ -42076,6 +44313,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=6620") AnnotationAssertion(rdfs:label "optic choroid fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mammary microvascular endothelial cell) @@ -42086,6 +44325,8 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=7600") AnnotationAssertion(rdfs:label "mammary microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (adipose microvascular endothelial cell) @@ -42096,6 +44337,9 @@ AnnotationAssertion( "http://www.sciencellonline.com/site/productInformation.php?keyword=7200") AnnotationAssertion(rdfs:label "adipose microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (migratory cardiac neural crest cell) @@ -42106,6 +44350,8 @@ AnnotationAssertion(Annotation( "CL:2000073") AnnotationAssertion(rdfs:label "migratory cardiac neural crest cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (splenocyte) @@ -42116,6 +44362,8 @@ AnnotationAssertion( "Splenocytes is a vague term that refers to any one of the different white blood cell types in the spleen. This name is seen many references as such and is not explained further, necessitating a need for this terminology.") AnnotationAssertion(rdfs:label "splenocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (anterior visceral endoderm cell) @@ -42125,6 +44373,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000075") AnnotationAssertion(rdfs:label "anterior visceral endoderm cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hindlimb stylopod vein endothelial cell) @@ -42134,6 +44384,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000076") AnnotationAssertion(rdfs:label "hindlimb stylopod vein endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (skeletal muscle tissue of pectoralis major striated muscle cell) @@ -42143,6 +44395,9 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000077") AnnotationAssertion(rdfs:label "skeletal muscle tissue of pectoralis major striated muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (placental pericyte) @@ -42152,6 +44407,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000078") AnnotationAssertion(rdfs:label "placental pericyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesenchymal stem cell of femoral bone marrow) @@ -42161,6 +44418,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000079") AnnotationAssertion(rdfs:label "mesenchymal stem cell of femoral bone marrow") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mesenchymal stem cell of abdominal adipose tissue) @@ -42171,6 +44430,8 @@ AnnotationAssertion( "CL:2000080") AnnotationAssertion(rdfs:label "mesenchymal stem cell of abdominal adipose tissue") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (melanocyte of skin of face) @@ -42180,6 +44441,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000081") AnnotationAssertion(rdfs:label "melanocyte of skin of face") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (melanocyte of foreskin) @@ -42189,6 +44452,9 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000082") AnnotationAssertion(rdfs:label "melanocyte of foreskin") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hair follicle dermal papilla cell of scalp) @@ -42198,6 +44464,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000083") AnnotationAssertion(rdfs:label "hair follicle dermal papilla cell of scalp") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (conjunctiva goblet cell) @@ -42207,6 +44475,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000084") AnnotationAssertion(rdfs:label "conjunctiva goblet cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (mononuclear cell of umbilical cord) @@ -42216,6 +44486,9 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000085") AnnotationAssertion(rdfs:label "mononuclear cell of umbilical cord") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neocortex basket cell) @@ -42225,6 +44498,9 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000086") AnnotationAssertion(rdfs:label "neocortex basket cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dentate gyrus of hippocampal formation basket cell) @@ -42234,6 +44510,10 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000087") AnnotationAssertion(rdfs:label "dentate gyrus of hippocampal formation basket cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (Ammon's horn basket cell) @@ -42243,6 +44523,10 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000088") AnnotationAssertion(rdfs:label "Ammon's horn basket cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dentate gyrus granule cell) @@ -42254,6 +44538,9 @@ AnnotationAssertion( "PMID:17765709") rdfs:comment "As far as can be determined, all dentate granule cells appear to project to CA3 and the axon trajectory is partially correlated with the position of the parent cell body.") AnnotationAssertion(rdfs:label "dentate gyrus granule cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dentate gyrus of hippocampal formation stellate cell) @@ -42263,6 +44550,9 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000090") AnnotationAssertion(rdfs:label "dentate gyrus of hippocampal formation stellate cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) # Class: (endometrial microvascular endothelial cell) @@ -42274,6 +44564,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "endometrial microvascular endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (hair follicular keratinocyte) @@ -42284,6 +44577,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "hair follicular keratinocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (bronchus fibroblast of lung) @@ -42294,6 +44589,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bronchus fibroblast of lung") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cord blood hematopoietic stem cell) @@ -42304,6 +44601,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cord blood hematopoietic stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of the reticular layer of dermis) @@ -42313,6 +44613,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000096") AnnotationAssertion(rdfs:label "fibroblast of the reticular layer of dermis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (midbrain dopaminergic neuron) @@ -42322,6 +44624,9 @@ AnnotationAssertion( AnnotationAssertion( "CL:2000097") AnnotationAssertion(rdfs:label "midbrain dopaminergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ciliated epithelial cell of esophagus) @@ -42331,6 +44636,9 @@ AnnotationAssertion( AnnotationAssertion( "CL:3000000") AnnotationAssertion(rdfs:label "ciliated epithelial cell of esophagus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (sympathetic noradrenergic neuron) @@ -42342,6 +44650,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sympathetic noradrenergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (sympathetic cholinergic neuron) @@ -42351,6 +44661,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:3000003") AnnotationAssertion(rdfs:label "sympathetic cholinergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (peripheral sensory neuron) @@ -42360,6 +44672,8 @@ AnnotationAssertion( AnnotationAssertion( "CL:3000004") AnnotationAssertion(rdfs:label "peripheral sensory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (fibroblast of breast) @@ -42370,6 +44684,7 @@ AnnotationAssertion( "fibroblast of breast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (fibroblast of skin of scalp) @@ -42378,7 +44693,8 @@ AnnotationAssertion( "skin of scalp fibroblast") AnnotationAssertion(rdfs:label "fibroblast of skin of scalp") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lateral ganglionic eminence derived neuron) @@ -42388,6 +44704,8 @@ AnnotationAssertion( "PMID:10377350") "LGE-derived neuron") AnnotationAssertion(rdfs:label "lateral ganglionic eminence derived neuron"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (L6b glutamatergic cortical neuron) @@ -42398,6 +44716,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "L6b glutamatergic cortical neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (amygdala excitatory neuron) @@ -42407,6 +44728,9 @@ AnnotationAssertion( "DOI:10.1101/2022.10.12.511898") rdfs:comment "An excitatory neuron that is located in the amygdala.") AnnotationAssertion(rdfs:label "amygdala excitatory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebellar inhibitory GABAergic interneuron) @@ -42416,6 +44740,10 @@ AnnotationAssertion( "DOI:10.1101/2022.10.12.511898") rdfs:comment "A GABAergic interneuron whose soma is located in the cerebellar cortex.") AnnotationAssertion(rdfs:label "cerebellar inhibitory GABAergic interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dentate gyrus neuron) @@ -42425,6 +44753,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dentate gyrus neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (medial ganglionic eminence derived interneuron) @@ -42435,6 +44765,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "medial ganglionic eminence derived interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (caudal ganglionic eminence derived interneuron) @@ -42445,6 +44777,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "caudal ganglionic eminence derived interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (thalamic excitatory neuron) @@ -42454,6 +44788,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "thalamic excitatory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (medial ganglionic eminence derived GABAergic cortical interneuron) @@ -42462,6 +44799,8 @@ AnnotationAssertion( "MGE cortical interneuron") AnnotationAssertion(rdfs:label "medial ganglionic eminence derived GABAergic cortical interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (caudal ganglionic eminence derived GABAergic cortical interneuron) @@ -42471,6 +44810,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "caudal ganglionic eminence derived GABAergic cortical interneuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (brain vascular cell) @@ -42480,6 +44821,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brain vascular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mammillary body neuron) @@ -42489,6 +44832,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mammillary body neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (midbrain-derived inhibitory neuron) @@ -42498,6 +44843,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "midbrain-derived inhibitory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (reticulospinal neuron) @@ -42506,6 +44854,9 @@ AnnotationAssertion( "PMID:29720934") "RSN") AnnotationAssertion(rdfs:label "reticulospinal neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vasopressin-secreting magnocellular cell) @@ -42513,6 +44864,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "vasopressin-secreting magnocellular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (amygdala pyramidal neuron) @@ -42520,6 +44874,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "amygdala pyramidal neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (cerebral cortex pyramidal neuron) @@ -42527,6 +44884,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "cerebral cortex pyramidal neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (cochlea auditory hair cell) @@ -42536,6 +44895,9 @@ AnnotationAssertion( "cochlear hair cell") AnnotationAssertion(rdfs:label "cochlea auditory hair cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myelinating glial cell) @@ -42543,6 +44905,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "myelinating glial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (somatosensory neuron) @@ -42550,6 +44914,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "somatosensory neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (koniocellular cell) @@ -42560,6 +44926,8 @@ AnnotationAssertion(Annotation( "PMID:10845061") rdfs:comment "In adult monkeys, koniocellular cells can be distinguished from parvocellular and magnocellular of the LGN by their expression of calbindin, the alpha subunit of type II calmodulin-dependent protein kinase, and the gamma subunit of protein kinase C.") AnnotationAssertion(rdfs:label "koniocellular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pulmonary capillary endothelial cell) @@ -42569,6 +44937,7 @@ AnnotationAssertion( AnnotationAssertion( "lung capillary endothelial cell") AnnotationAssertion(rdfs:label "pulmonary capillary endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -42580,6 +44949,8 @@ AnnotationAssertion( "PMID:31819095") Annotation( "PMID:34082079") rdfs:comment "Cellular functions and extracellular interactions of choroidal melanocytes are distinct to skin melanocytes. They might have both neuroectodermal as well as mesectodermal origins.") AnnotationAssertion(rdfs:label "choroidal melanocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (stromal cell of thymus) @@ -42588,6 +44959,8 @@ AnnotationAssertion( "thymic stromal cell") AnnotationAssertion(rdfs:label "stromal cell of thymus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (pronephric podocyte) @@ -42597,6 +44970,7 @@ AnnotationAssertion(Annotation( "pronephric podocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney loop of Henle short descending thin limb epithelial cell) @@ -42608,6 +44982,7 @@ AnnotationAssertion( "kidney loop of Henle short descending thin limb epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of early distal convoluted tubule) @@ -42618,6 +44993,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "epithelial cell of early distal convoluted tubule") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (epithelial cell of late distal convoluted tubule) @@ -42629,6 +45006,8 @@ AnnotationAssertion( "PMID:24855283") rdfs:comment "Although mineralocorticoid receptors are expressed throughout the entire [distal convoluted tubule], the DCT2 is sensitive to the actions of aldosterone, because it expresses an enzyme called 11-β hydroxysteroid dehydrogenase 2 (11-βHSD2)") AnnotationAssertion(rdfs:label "epithelial cell of late distal convoluted tubule") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (kidney connecting tubule principal cell) @@ -42639,6 +45018,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "kidney connecting tubule principal cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) # Class: (renal medullary fibroblast) @@ -42651,6 +45031,8 @@ AnnotationAssertion( "PMID:10559635") rdfs:comment "It has been noted that inner medullary fibroblasts are involved in the regulation of water and electrolyte homeostasis.") AnnotationAssertion(rdfs:label "renal medullary fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (renal cortical fibroblast) @@ -42660,6 +45042,8 @@ AnnotationAssertion( "PMID:16230044") rdfs:comment "Renal cortical fibroblasts have key roles in mediating intercellular communication with neighboring/infiltrating cells and extracellular matrix and maintenance of renal tissue architecture. They additionally have an endocrine function in the production of epoetin.") AnnotationAssertion(rdfs:label "renal cortical fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (GABAergic amacrine cell) @@ -42669,6 +45053,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "GABAergic amacrine cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (blood lymphocyte) @@ -42677,6 +45063,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "blood lymphocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (interstitial cell) @@ -42684,6 +45072,8 @@ AnnotationAssertion(Annotation( "2022-11-30T14:35:08Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "interstitial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (valve interstitial cell) @@ -42697,6 +45087,9 @@ AnnotationAssertion( "PMID:25311230") rdfs:comment "Activated valve interstitial cells undergo continual turn over into deactivated fibroblasts and other cell fates (such as apoptosis).") AnnotationAssertion(rdfs:label "valve interstitial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (valve endothelial cell) @@ -42708,6 +45101,8 @@ AnnotationAssertion(Annotation( "PMID:25311230") rdfs:comment "At least in some mammalian species, a valve endothelial cell expresses CD31. Valve endothelial cells can undergo an endothelial to mesenchymal transition to acquire a fibroblast or myofibroblast phenotype that leads to changes in the microenvironmental signals and facilitates tissue regeneration.") AnnotationAssertion(rdfs:label "valve endothelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (respiratory ciliated cell) @@ -42716,7 +45111,8 @@ AnnotationAssertion( "ciliated cell of the respiratory tract") AnnotationAssertion(rdfs:label "respiratory ciliated cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (dental pulp stem cell) @@ -42725,6 +45121,7 @@ AnnotationAssertion( ) "DPSC") AnnotationAssertion(rdfs:label "dental pulp stem cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) # Class: (endometrial ciliated epithelial cell) @@ -42738,6 +45135,8 @@ AnnotationAssertion( "ttps://www.nature.com/articles/s41591-020-1040-z") rdfs:comment "In human samples, the expression of FOXJ1 protein, a regulator for motile cilia with epithelial lineage identity, has been noted.") AnnotationAssertion(rdfs:label "endometrial ciliated epithelial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (ureteric bud cell) @@ -42747,6 +45146,9 @@ AnnotationAssertion( "PMID:24183650") Annotation( ) "UB cell") AnnotationAssertion(rdfs:label "ureteric bud cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf(Annotation( "PMID:9374839") ObjectSomeValuesFrom( )) # Class: (endothelial cell of venule of lymph node) @@ -42755,6 +45157,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "endothelial cell of venule of lymph node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of arteriole of lymph node) @@ -42762,6 +45166,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "endothelial cell of arteriole of lymph node") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuroendocrine cell of epithelium of crypt of Lieberkuhn) @@ -42769,6 +45175,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "neuroendocrine cell of epithelium of crypt of Lieberkuhn") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myoepithelial cell of bronchus submucosal gland) @@ -42778,6 +45187,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "myoepithelial cell of bronchus submucosal gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of taenia coli) @@ -42785,6 +45197,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "smooth muscle cell of taenia coli") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (serous secreting cell of bronchus submucosal gland) @@ -42794,6 +45208,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "serous secreting cell of bronchus submucosal gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (endothelial cell of efferent lymphatic vessel) @@ -42801,6 +45218,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "endothelial cell of efferent lymphatic vessel") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (brush cell of epithelium of lobar bronchus) @@ -42810,6 +45229,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "brush cell of epithelium of lobar bronchus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (vein endothelial cell of respiratory system) @@ -42819,6 +45241,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vein endothelial cell of respiratory system") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (goblet cell of epithelium of lobar bronchus) @@ -42828,6 +45252,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "goblet cell of epithelium of lobar bronchus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (neuroendocrine cell of epithelium of lobar bronchus) @@ -42837,6 +45264,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "neuroendocrine cell of epithelium of lobar bronchus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of large intestine smooth muscle circular layer) @@ -42844,6 +45274,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "smooth muscle cell of large intestine smooth muscle circular layer") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (smooth muscle cell of large intestine smooth muscle longitudinal layer) @@ -42851,6 +45283,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "smooth muscle cell of large intestine smooth muscle longitudinal layer") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (suprabasal keratinocyte) @@ -42859,6 +45293,8 @@ AnnotationAssertion( "2023-02-02T11:17:04Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "suprabasal keratinocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (retinal astrocyte) @@ -42870,6 +45306,9 @@ AnnotationAssertion( "PMID:32555229") Annotation( "PMID:33796062") rdfs:comment "In response to elevated intraocular pressure, a retinal astrocyte may modulate extracellular matrix remodeling. In the human retina, a retinal astrocyte is GFAP-positive, SOD3-positive and GYPC-positive.") AnnotationAssertion(rdfs:label "retinal astrocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (bronchiolar smooth muscle cell) @@ -42881,6 +45320,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bronchiolar smooth muscle cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung megakaryocyte) @@ -42898,6 +45338,8 @@ AnnotationAssertion( "lung megakaryocyte") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mucus secreting cell of trachea gland) @@ -42910,6 +45352,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "mucus secreting cell of trachea gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (myoepithelial cell of trachea gland) @@ -42921,6 +45366,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "myoepithelial cell of trachea gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (mucus secreting cell of bronchus submucosal gland) @@ -42933,6 +45381,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "mucus secreting cell of bronchus submucosal gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (perichondrial fibroblast) @@ -42944,6 +45395,8 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "perichondrial fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (lung perichondrial fibroblast) @@ -42956,6 +45409,8 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion(rdfs:label "lung perichondrial fibroblast") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) # Class: (mucus secreting cell of tracheobronchial tree submucosal gland) @@ -42964,7 +45419,10 @@ AnnotationAssertion( "2023-04-20T10:55:50Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "mucus secreting cell of tracheobronchial tree submucosal gland") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (taste receptor cell of tongue) @@ -42974,6 +45432,10 @@ AnnotationAssertion( "DOI:10.1016/s0022-5320(69)80043-2") "gustatory cell of tongue") AnnotationAssertion(rdfs:label "taste receptor cell of tongue") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (catecholaminergic neuron) @@ -42983,6 +45445,9 @@ AnnotationAssertion( "PMID:10191060") Annotation( "PMID:12128258") Annotation( "PMID:34880760") Annotation( "https://orcid.org/0000-0002-2244-7917") rdfs:comment "Frequently used when describing the developing nervous system in zebrafish. A catecholaminergic neuron expresses tyrosine hydroxylase (TH), tyrosine hydroxylase 2 (TH2), aromatic amino acid decarboxylase (AADC), dopamine b-hydroxylase (DBH), and phenylethanolamine-N-methyl transferase (PEMT), which are enzymes necessary for catecholamine synthesis.") AnnotationAssertion(rdfs:label "catecholaminergic neuron") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (perivascular cell) @@ -42991,6 +45456,8 @@ AnnotationAssertion( "2023-08-22T13:40:28Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label "perivascular cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (airway submucosal gland duct ciliated cell) @@ -43002,6 +45469,9 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "airway submucosal gland duct ciliated cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (luminal adaptive secretory precursor cell of mammary gland) @@ -43022,7 +45492,7 @@ AnnotationAssertion(Annotation( "PMID:37380767") Annotation( ) "LumSec") AnnotationAssertion(rdfs:label "luminal adaptive secretory precursor cell of mammary gland") SubClassOf( ) -SubClassOf( ) +SubClassOf( ) # Class: (endothelial cell of central vein of liver) @@ -43031,6 +45501,8 @@ AnnotationAssertion( "PMID:28287163") "endothelial cell of central vein") AnnotationAssertion(rdfs:label "endothelial cell of central vein of liver") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (uterine resident macrophage) @@ -43041,6 +45513,8 @@ AnnotationAssertion(Annotation( "PMID:36113384") rdfs:comment "Uterine macrophages are reported to be evenly distributed throughout the endometrial stroma but with aggregations observed close to the lumen of superficial secretory glands.") AnnotationAssertion(rdfs:label "uterine resident macrophage") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (enteroglial cell) @@ -43051,6 +45525,8 @@ AnnotationAssertion(Annotation( "PMID:11169131") Annotation( ) "enteric glia") AnnotationAssertion(rdfs:label "enteroglial cell") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) # Class: (fetal pre-type II pneumocyte) @@ -43075,24 +45551,34 @@ AnnotationAssertion(Annotation( "PMID:31377878") "orbital adipose-derived mesenchymal stem cell") AnnotationAssertion(rdfs:label "mesenchymal stem cell of orbital adipose tissue") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (reproduction) - -AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:isa_complete") Annotation( "GOC:jl") Annotation( "ISBN:0198506732") "The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (border associated macrophage) + +AnnotationAssertion(Annotation( "PMID:37232741") Annotation( "PMID:37626977") "A central nervous system macrophage that is part of a choroid plexus, a meninx and a perivascular space. A border associated macrophage interacts with various components of the CNS vasculature and meninges, it participates in immune surveillance and in the regulation of the blood brain barrier.") +AnnotationAssertion( ) +AnnotationAssertion( "2024-03-26T16:39:56Z"^^xsd:dateTime) +AnnotationAssertion(Annotation( "PMID:36945367") Annotation( ) "BAM") +AnnotationAssertion(Annotation( "PMID:33556248") Annotation( ) "CAM") +AnnotationAssertion(Annotation( "PMID:37232741") "CNS-associated macrophage") +AnnotationAssertion(Annotation( "PMID:29426702") Annotation( "PMID:37232741") rdfs:comment "In humans, a border associate macrophage expresses CD45 and CD11B. This cell is also known to have the following molecular signature: CD206, CD38, LYVE1, CD163, CD169.") +AnnotationAssertion(rdfs:label "border associated macrophage"@en) +SubClassOf( ) + +# Class: (obsolete reproduction) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:isa_complete") Annotation( "GOC:jl") Annotation( "ISBN:0198506732") "OBSOLETE. The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27054"^^xsd:anyURI) +AnnotationAssertion( "GO:0022414") AnnotationAssertion( "GO:0019952") AnnotationAssertion( "GO:0050876") -AnnotationAssertion( "Wikipedia:Reproduction") AnnotationAssertion( "reproductive physiological process") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0000003") -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "reproduction") -SubClassOf( ) -DisjointClasses( ) +AnnotationAssertion(rdfs:comment "The reason for obsoletion is that this term is equivalent to reproductive process.") +AnnotationAssertion(rdfs:label "obsolete reproduction") +AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) # Class: (vacuole inheritance) @@ -43148,6 +45634,29 @@ AnnotationAssertion(rdfs:label "mito EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (negative regulation of transcription by RNA polymerase II) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.") +AnnotationAssertion( "GO:0010553") +AnnotationAssertion( "GO:0045816") +AnnotationAssertion( "down regulation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "down-regulation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "downregulation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "inhibition of transcription from RNA polymerase II promoter") +AnnotationAssertion( "negative regulation of transcription from Pol II promoter") +AnnotationAssertion( "negative regulation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "down regulation of global transcription from RNA polymerase II promoter") +AnnotationAssertion( "down-regulation of global transcription from RNA polymerase II promoter") +AnnotationAssertion( "downregulation of global transcription from RNA polymerase II promoter") +AnnotationAssertion( "inhibition of global transcription from RNA polymerase II promoter") +AnnotationAssertion( "negative regulation of gene-specific transcription from RNA polymerase II promoter") +AnnotationAssertion( "negative regulation of global transcription from Pol II promoter") +AnnotationAssertion( "negative regulation of transcription from RNA polymerase II promoter, global") +AnnotationAssertion( "GO:0000122") +AnnotationAssertion(rdfs:label "negative regulation of transcription by RNA polymerase II") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (Golgi membrane) AnnotationAssertion(Annotation( "GOC:mah") "The lipid bilayer surrounding any of the compartments of the Golgi apparatus.") @@ -43403,6 +45912,102 @@ AnnotationAssertion( "cell morphogenesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (transcription cis-regulatory region binding) + +AnnotationAssertion(Annotation( "GOC:txnOH") "Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19312"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20791"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2010-08-10T02:58:18Z") +AnnotationAssertion( "GO:0000975") +AnnotationAssertion( "GO:0000984") +AnnotationAssertion( "GO:0001017") +AnnotationAssertion( "GO:0044212") +AnnotationAssertion( "regulatory region DNA binding") +AnnotationAssertion( "transcription regulatory region sequence-specific DNA binding") +AnnotationAssertion( "bacterial-type RNA polymerase regulatory region DNA binding") +AnnotationAssertion( "bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding") +AnnotationAssertion( "eubacterial-type RNA polymerase regulatory region DNA binding") +AnnotationAssertion( "eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "transcription regulatory region DNA binding") +AnnotationAssertion( "GO:0000976") +AnnotationAssertion(rdfs:comment "Note that this term is meant to also capture non-specific binding to regulatory regions. Also, to minimize ambiguity in the use of the word \"promoter\" in GO, we have chosen the phrase \"transcription regulatory region\" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the \"core promoter\" where the basal transcription machinery binds, the \"core promoter proximal region\" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription.") +AnnotationAssertion(rdfs:label "transcription cis-regulatory region binding") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ) + +# Class: (RNA polymerase II transcription regulatory region sequence-specific DNA binding) + +AnnotationAssertion(Annotation( "GOC:txnOH") "Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/19312"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2010-08-10T11:05:36Z") +AnnotationAssertion( "GO:0001012") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "RNA polymerase II regulatory region DNA binding") +AnnotationAssertion( "GO:0000977") +AnnotationAssertion(rdfs:comment "To minimize ambiguity in the use of the word \"promoter\" in GO, we have chosen the phrase \"transcription regulatory region\" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the \"core promoter\" where the basal transcription machinery binds, the \"core promoter proximal region\" where regulatory factors other than the basal machinery bind. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription.") +AnnotationAssertion(rdfs:label "RNA polymerase II transcription regulatory region sequence-specific DNA binding") +SubClassOf( ) + +# Class: (DNA-binding transcription factor activity, RNA polymerase II-specific) + +AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that modulates the transcription of specific gene sets transcribed by RNA polymerase II.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/15530"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16131"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16152"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2010-08-10T02:37:21Z") +AnnotationAssertion( "GO:0000982") +AnnotationAssertion( "GO:0001133") +AnnotationAssertion( "GO:0001200") +AnnotationAssertion( "GO:0001201") +AnnotationAssertion( "GO:0001202") +AnnotationAssertion( "GO:0001203") +AnnotationAssertion( "GO:0003705") +AnnotationAssertion(Annotation( "GOC:vw") "transcription factor") +AnnotationAssertion( "RNA polymerase II transcription factor activity, sequence-specific DNA binding") +AnnotationAssertion( "RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding") +AnnotationAssertion( "sequence-specific DNA binding RNA polymerase II transcription factor activity") +AnnotationAssertion( "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity") +AnnotationAssertion( "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity") +AnnotationAssertion( "RNA polymerase II transcription factor activity, copper ion regulated core promoter proximal region sequence-specific binding") +AnnotationAssertion( "RNA polymerase II transcription factor activity, copper ion regulated proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "RNA polymerase II transcription factor activity, metal ion regulated core promoter proximal region sequence-specific binding") +AnnotationAssertion( "RNA polymerase II transcription factor activity, metal ion regulated proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "RNA polymerase II transcription factor activity, metal ion regulated sequence-specific DNA binding") +AnnotationAssertion( "RNA polymerase II transcription factor activity, zinc ion regulated core promoter proximal region sequence-specific DNA binding") +AnnotationAssertion( "RNA polymerase II transcription factor activity, zinc ion regulated proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity") +AnnotationAssertion( "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity") +AnnotationAssertion( "metal ion regulated sequence-specific DNA binding RNA polymerase II transcription factor activity") +AnnotationAssertion( "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity") +AnnotationAssertion( "transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding") +AnnotationAssertion( "transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding") +AnnotationAssertion( "transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity") +AnnotationAssertion( "GO:0000981") +AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") +AnnotationAssertion(rdfs:label "DNA-binding transcription factor activity, RNA polymerase II-specific") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (transcription regulatory region nucleic acid binding) + +AnnotationAssertion(Annotation( "GOC:txnOH") "Binding to a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20791"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2010-10-21T04:08:56Z") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "regulatory region nucleic acid binding") +AnnotationAssertion( "GO:0001067") +AnnotationAssertion(rdfs:label "transcription regulatory region nucleic acid binding") +SubClassOf( ) + # Class: (response to acid chemical) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:rn") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical may be in gaseous, liquid or solid form.") @@ -43411,11 +46016,150 @@ AnnotationAssertion( "response to acid anion") AnnotationAssertion( "response to oxoanion") AnnotationAssertion( "GO:0001101") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This term should be used to describe a response to a specific acid as a chemical. E.g., if an organism were responding to glutamate, then the response would be glutamate-specific; the organism is actually responding to the chemical structure of the anion portion of the dissociated acid. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. If annotating experiments where an acid is playing a role as a proton donor, please annotate to GO:0010447 'response to acidic pH' instead.") AnnotationAssertion(rdfs:label "response to acid chemical") SubClassOf( ) +# Class: (RNA-templated transcription) + +AnnotationAssertion(Annotation( "GOC:txnOH") "The synthesis of an RNA transcript from an RNA template.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22555"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2011-03-14T03:54:46Z") +AnnotationAssertion(Annotation( "GOC:txnOH") "transcription, RNA-dependent") +AnnotationAssertion( "transcription, RNA-templated") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0001172") +AnnotationAssertion(rdfs:label "RNA-templated transcription") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DNA-binding transcription activator activity) + +AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16736"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2011-01-26T03:09:27Z") +AnnotationAssertion( "GO:0001140") +AnnotationAssertion( "GO:0001215") +AnnotationAssertion( "bacterial-type RNA polymerase transcriptional activator activity, metal ion regulated sequence-specific DNA binding") +AnnotationAssertion( "bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding") +AnnotationAssertion( "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "GO:0001216") +AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") +AnnotationAssertion(rdfs:label "DNA-binding transcription activator activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + +# Class: (DNA-binding transcription repressor activity) + +AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16736"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2011-01-26T03:15:45Z") +AnnotationAssertion( "GO:0001141") +AnnotationAssertion( "GO:0001218") +AnnotationAssertion( "GO:0001219") +AnnotationAssertion( "GO:0001220") +AnnotationAssertion( "bacterial-type DNA binding transcription repressor activity") +AnnotationAssertion( "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, cadmium ion regulated sequence-specific DNA binding") +AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, copper ion regulated sequence-specific DNA binding") +AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, metal ion regulated sequence-specific DNA binding") +AnnotationAssertion( "bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding") +AnnotationAssertion( "cadmium ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "copper ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "transcriptional repressor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding") +AnnotationAssertion( "transcriptional repressor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0001217") +AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") +AnnotationAssertion(rdfs:label "DNA-binding transcription repressor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + +# Class: (DNA-binding transcription repressor activity, RNA polymerase II-specific) + +AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A DNA-binding transcription factor activity that represses or decreases the transcription of specific gene sets transcribed by RNA polymerase II.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16131"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16152"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2010-10-26T03:56:48Z") +AnnotationAssertion( "GO:0001078") +AnnotationAssertion( "GO:0001206") +AnnotationAssertion( "GO:0001210") +AnnotationAssertion( "GO:0001214") +AnnotationAssertion( "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding") +AnnotationAssertion( "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "RNA polymerase II transcriptional repressor activity, metal ion regulated core promoter proximal region sequence-specific binding") +AnnotationAssertion( "RNA polymerase II transcriptional repressor activity, metal ion regulated proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "distal enhancer DNA-binding transcription repressor activity, RNA polymerase II-specific") +AnnotationAssertion( "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "metal ion regulated sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific") +AnnotationAssertion( "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in negative regulation of transcription") +AnnotationAssertion( "transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding") +AnnotationAssertion( "transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "transcriptional repressor activity, metal ion regulated sequence-specific DNA binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0001227") +AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") +AnnotationAssertion(rdfs:label "DNA-binding transcription repressor activity, RNA polymerase II-specific") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + +# Class: (DNA-binding transcription activator activity, RNA polymerase II-specific) + +AnnotationAssertion(Annotation( "GOC:aruk") Annotation( "GOC:txnOH-2018") Annotation( "PMID:20737563") Annotation( "PMID:27145859") "A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets transcribed by RNA polymerase II.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16131"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16152"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2012-01-26T03:10:20Z") +AnnotationAssertion( "GO:0001077") +AnnotationAssertion( "GO:0001205") +AnnotationAssertion( "GO:0001209") +AnnotationAssertion( "GO:0001211") +AnnotationAssertion( "GO:0001212") +AnnotationAssertion( "GO:0001213") +AnnotationAssertion( "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding") +AnnotationAssertion( "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "RNA polymerase II transcriptional activator activity, copper ion regulated proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "RNA polymerase II transcriptional activator activity, metal ion regulated core promoter proximal region sequence-specific binding") +AnnotationAssertion( "RNA polymerase II transcriptional activator activity, metal ion regulated proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "RNA polymerase II transcriptional activator activity, zinc ion regulated core promoter proximal region sequence-specific binding") +AnnotationAssertion( "RNA polymerase II transcriptional activator activity, zinc ion regulated proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "distal enhancer DNA-binding transcription activator activity, RNA polymerase II-specific") +AnnotationAssertion( "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "metal ion regulated sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific") +AnnotationAssertion( "sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding") +AnnotationAssertion( "transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding") +AnnotationAssertion( "transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "transcriptional activator activity, metal ion regulated sequence-specific DNA binding") +AnnotationAssertion( "zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0001228") +AnnotationAssertion(rdfs:comment "For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.") +AnnotationAssertion(rdfs:label "DNA-binding transcription activator activity, RNA polymerase II-specific") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (skeletal system development) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:jid") Annotation( "GOC:tb") "The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).") @@ -43486,7 +46230,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "ciliary or bacterial-type flagellar motility") AnnotationAssertion( "GO:0001539") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent, while the bacterial- and archaeal-type flagella have a different structure. The former are microtubule-based structures that lash back and forth and are present only in eukaryotes, while the latter achieve motility by rotation. Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. These three structures never co-exist in the same organism. Therefore, GO:0001539 'cilium or flagellum-dependent cell motility' is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term. Direct annotations to GO:0001539 'cilium or flagellum-dependent cell motility' may be amended during annotation QC.") AnnotationAssertion(rdfs:label "cilium or flagellum-dependent cell motility") SubClassOf( ) @@ -43728,7 +46472,7 @@ AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0001653") AnnotationAssertion(rdfs:label "peptide receptor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -43903,7 +46647,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0001678") AnnotationAssertion(rdfs:label "intracellular glucose homeostasis") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (histamine metabolic process) @@ -44379,6 +47123,8 @@ SubClassOf( (regulation of cytokine production) AnnotationAssertion(Annotation( "GOC:add") Annotation( "ISBN:0781735149") "Any process that modulates the frequency, rate, or extent of production of a cytokine.") +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "GO:0042035") AnnotationAssertion( "GO:0050707") AnnotationAssertion( "regulation of cytokine anabolism") @@ -44391,6 +47137,12 @@ AnnotationAssertion( "GO:0001817") AnnotationAssertion(rdfs:label "regulation of cytokine production") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (negative regulation of cytokine production) @@ -48056,7 +50808,7 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0002790") AnnotationAssertion(rdfs:label "peptide secretion") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -48239,7 +50991,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:add") "Any process that modulates the frequency, rate, or extent of a response to biotic stimulus.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0002831") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "regulation of response to biotic stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -48253,7 +51005,7 @@ AnnotationAssertion( "inhibition of response to biotic stimulus") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0002832") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "negative regulation of response to biotic stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -48268,7 +51020,7 @@ AnnotationAssertion( "stimulation of response to biotic stimulus") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0002833") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "positive regulation of response to biotic stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -48527,7 +51279,7 @@ AnnotationAssertion( "GOC:dph") Annotation( "GOC:tb") "reproductive developmental process") AnnotationAssertion( "GO:0003006") AnnotationAssertion(rdfs:label "developmental process involved in reproduction") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( )) SubClassOf( ) SubClassOf( ) @@ -50483,7 +53235,7 @@ AnnotationAssertion( "GO:0003333") AnnotationAssertion(rdfs:comment "Note that this term is not intended for use in annotating lateral movement within membranes.") AnnotationAssertion(rdfs:label "amino acid transmembrane transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (keratinocyte development) @@ -50840,17 +53592,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (cell-cell signaling involved in amphid sensory organ development) - -AnnotationAssertion(Annotation( "GOC:ascb_2009") Annotation( "GOC:dph") Annotation( "GOC:tb") "Any process that mediates the transfer of information from one cell to another and contributes to the progression of an amphid sensory organ over time, from its formation to the mature state.") -AnnotationAssertion( "dph") -AnnotationAssertion( "2009-12-09T08:55:37Z") -AnnotationAssertion(Annotation( "GOC:mah") "cell-cell signalling involved in amphid sensory organ development") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0003385") -AnnotationAssertion(rdfs:label "cell-cell signaling involved in amphid sensory organ development") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (amphid sensory organ development) AnnotationAssertion(Annotation( "GOC:ascb_2009") Annotation( "GOC:dph") Annotation( "GOC:tb") "The progression of the amphid sensory organ over time, from its formation to the mature structure. Amphid sensory organs are the sensory organs of nematodes.") @@ -51163,11 +53904,14 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "DNA binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -51188,15 +53932,72 @@ AnnotationAssertion( "chromatin binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (double-stranded DNA binding) + +AnnotationAssertion(Annotation( "GOC:elh") Annotation( "GOC:vw") "Binding to double-stranded DNA.") +AnnotationAssertion(Annotation( "GOC:elh") "dsDNA binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0003690") +AnnotationAssertion(rdfs:label "double-stranded DNA binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (DNA-binding transcription factor activity) + +AnnotationAssertion(Annotation( "GOC:txnOH-2018") "A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/15704"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16534"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20253"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2010-10-21T04:37:54Z") +AnnotationAssertion( "GO:0000130") +AnnotationAssertion( "GO:0001071") +AnnotationAssertion( "GO:0001130") +AnnotationAssertion( "GO:0001131") +AnnotationAssertion( "GO:0001151") +AnnotationAssertion( "GO:0001199") +AnnotationAssertion( "GO:0001204") +AnnotationAssertion( "nucleic acid binding transcription factor activity") +AnnotationAssertion( "transcription factor activity") +AnnotationAssertion( "DNA binding transcription factor activity") +AnnotationAssertion( "gene-specific transcription factor activity") +AnnotationAssertion( "sequence-specific DNA binding transcription factor activity") +AnnotationAssertion( "bacterial-type DNA binding transcription factor activity") +AnnotationAssertion( "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity") +AnnotationAssertion( "bacterial-type RNA polymerase transcription enhancer sequence-specific DNA binding transcription factor activity") +AnnotationAssertion( "bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding") +AnnotationAssertion( "bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding") +AnnotationAssertion( "metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity") +AnnotationAssertion( "metal ion regulated sequence-specific DNA binding transcription factor activity") +AnnotationAssertion( "sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity") +AnnotationAssertion( "transcription factor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding") +AnnotationAssertion( "transcription factor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding") +AnnotationAssertion( "transcription factor activity, bacterial-type RNA polymerase transcription enhancer sequence-specific binding") +AnnotationAssertion( "transcription factor activity, metal ion regulated sequence-specific DNA binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0003700") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "Usage guidance: Most DNA-binding transcription factors do not have enzymatic activity. The presence of specific DNA-binding domains known to be present in DNA-binding transcription factors (HOX, GATA etc) should be used to help decide whether a protein is a DNA binding transcription factor or a coregulator. If a protein has an enzymatic activity (for example, ubiquitin ligase, histone acetyl transferase) and no known DNA binding domain, consider annotating to GO:0003712 transcription coregulator activity. Special care should be taken with proteins containing zinc fingers, Myb/SANT and ARID domains, since only a subset of proteins containing these domains directly and selectively bind to regulatory DNA motifs in cis-regulatory regions.") +AnnotationAssertion(rdfs:label "DNA-binding transcription factor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (nuclear steroid receptor activity) AnnotationAssertion(Annotation( "GOC:signaling") Annotation( "PMID:14708019") "Combining with a steroid hormone and transmitting the signal within the cell to initiate a change in cell activity or function.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16717"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26957"^^xsd:anyURI) AnnotationAssertion( "steroid hormone receptor activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0003707") AnnotationAssertion(rdfs:label "nuclear steroid receptor activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -51216,11 +54017,14 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "RNA binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -51235,11 +54039,14 @@ AnnotationAssertion( "GO:0003824") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "catalytic activity") SubClassOf( ) @@ -51280,7 +54087,21 @@ AnnotationAssertion(Annotation(rdfs:label "INF-gamma induced phosphorylation of AnnotationAssertion(Annotation(rdfs:label "IRAK1 phosphorylates Pellino") "Reactome:R-HSA-937034") AnnotationAssertion(Annotation(rdfs:label "Unknown kinase phosphorylates NICD4") "Reactome:R-HSA-9604606") AnnotationAssertion(Annotation(rdfs:label "GTP-bound RAC1 contributes to MAPK8 activation") "Reactome:R-HSA-9673284") +AnnotationAssertion(Annotation(rdfs:label "JAK1-activated RAF1 phosphorylates MAPKs") "Reactome:R-HSA-9732753") AnnotationAssertion(Annotation(rdfs:label "IRAK1 phosphorylates Pellino upon TLR7/8 or 9 activation") "Reactome:R-HSA-975139") +AnnotationAssertion(Annotation(rdfs:label "PKR dimer autophosphorylates") "Reactome:R-HSA-9833820") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates eIF2-alpha") "Reactome:R-HSA-9835885") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates DHX9") "Reactome:R-HSA-9836159") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates CDK1") "Reactome:R-HSA-9836184") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates MKK6") "Reactome:R-HSA-9836322") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates TP53 tetramer") "Reactome:R-HSA-9836362") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates ILF3:ILF2") "Reactome:R-HSA-9836383") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates MAPT") "Reactome:R-HSA-9836404") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates SNCA") "Reactome:R-HSA-9836435") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates HIV tat") "Reactome:R-HSA-9836449") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates PTPN2") "Reactome:R-HSA-9836515") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates SPHK1") "Reactome:R-HSA-9836617") +AnnotationAssertion(Annotation(rdfs:label "p-PKR dimer phosphorylates PPP2R5A") "Reactome:R-HSA-9836664") AnnotationAssertion( "protamine kinase activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0004672") @@ -51327,7 +54148,6 @@ AnnotationAssertion(Annotation(rdfs:label "Wee1-mediated phosphorylation of Cycl AnnotationAssertion(Annotation(rdfs:label "SRC-1 autophosphorylates") "Reactome:R-HSA-170991") AnnotationAssertion(Annotation(rdfs:label "Binding and activation of MAP Kinase") "Reactome:R-HSA-171011") AnnotationAssertion(Annotation(rdfs:label "Phosphorylation of Cyclin A:Cdk2 at Tyr 15") "Reactome:R-HSA-174164") -AnnotationAssertion(Annotation(rdfs:label "GAB1 phosphorylation by EGFR kinase") "Reactome:R-HSA-177930") AnnotationAssertion(Annotation(rdfs:label "EGFR autophosphorylation") "Reactome:R-HSA-177934") AnnotationAssertion(Annotation(rdfs:label "Phosphorylation of EGFR by SRC kinase") "Reactome:R-HSA-177937") AnnotationAssertion(Annotation(rdfs:label "Phosphorylation of CBL (EGFR:CBL)") "Reactome:R-HSA-182969") @@ -51355,7 +54175,7 @@ AnnotationAssertion(Annotation(rdfs:label "Ligand-independent phosphorylation of AnnotationAssertion(Annotation(rdfs:label "Autocatalytic phosphorylation of FGFR3c P250R mutant") "Reactome:R-HSA-2012073") AnnotationAssertion(Annotation(rdfs:label "Autocatalytic phosphorylation of FGFR3 cysteine mutants") "Reactome:R-HSA-2012082") AnnotationAssertion(Annotation(rdfs:label "Autocatalytic phosphorylation of FGFR4 Y367C mutant") "Reactome:R-HSA-2012087") -AnnotationAssertion(Annotation(rdfs:label "ALK autophosphorylation downstream of PTN and MDK") "Reactome:R-HSA-201521") +AnnotationAssertion(Annotation(rdfs:label "ALK autophosphorylation") "Reactome:R-HSA-201521") AnnotationAssertion(Annotation(rdfs:label "Phosphorylation of ITAM motifs in CD3 complexes") "Reactome:R-HSA-202165") AnnotationAssertion(Annotation(rdfs:label "Phosphorylation of ZAP-70 by Lck") "Reactome:R-HSA-202168") AnnotationAssertion(Annotation(rdfs:label "Activation of ZAP-70") "Reactome:R-HSA-202174") @@ -51477,7 +54297,7 @@ AnnotationAssertion(Annotation(rdfs:label "Src kinases phosphorylate VAV") "Reactome:R-HSA-5218828") AnnotationAssertion(Annotation(rdfs:label "SRC-1 phosphorylates PTK2-beta") "Reactome:R-HSA-5218830") AnnotationAssertion(Annotation(rdfs:label "p-Y402-PTK2B phosphorylates p-5Y,S732-PTK2 on Y407") "Reactome:R-HSA-5218851") -AnnotationAssertion(Annotation(rdfs:label "AXL autophosphorylates on Y772 and Y814") "Reactome:R-HSA-5357429") +AnnotationAssertion(Annotation(rdfs:label "AXL autophosphorylates on Y779 and Y821") "Reactome:R-HSA-5357429") AnnotationAssertion(Annotation(rdfs:label "1,3-beta-D-glucan:p-Y15-CLEC7A:SYK phosphorylates PLCG") "Reactome:R-HSA-5607745") AnnotationAssertion(Annotation(rdfs:label "SRC kinase phosphorylates CLEC7A:1,3-beta-D-glucan") "Reactome:R-HSA-5607750") AnnotationAssertion(Annotation(rdfs:label "LYN and FYN phosphorylate FCER1G in CLEC6A:FCERG and CLEC4E:FCERG") "Reactome:R-HSA-5621355") @@ -51572,8 +54392,8 @@ AnnotationAssertion(Annotation(rdfs:label "SRC,YES1 phosphorylate YAP1") "Reactome:R-HSA-8942607") AnnotationAssertion(Annotation(rdfs:label "p-S13, FUNDC1 is phosphorylated by CK2 at Tyr18") "Reactome:R-HSA-8948143") AnnotationAssertion(Annotation(rdfs:label "ABL1 phosphorylates YAP1") "Reactome:R-HSA-8956659") -AnnotationAssertion(Annotation(rdfs:label "G protein alpha (i)-SRC complex catalyzes SRC to p-Y416-SRC") "Reactome:R-HSA-8964242") -AnnotationAssertion(Annotation(rdfs:label "G alpha (s):GTP:SRC catalyzes SRC to p-Y416-SRC") "Reactome:R-HSA-8964252") +AnnotationAssertion(Annotation(rdfs:label "G protein alpha (i)-SRC complex catalyzes SRC to p-Y419-SRC") "Reactome:R-HSA-8964242") +AnnotationAssertion(Annotation(rdfs:label "G alpha (s):GTP:SRC catalyzes SRC to p-Y419-SRC") "Reactome:R-HSA-8964252") AnnotationAssertion(Annotation(rdfs:label "JAK2 bound to IL12RB2:IL12RB2 phosphorylate STAT4") "Reactome:R-HSA-8983872") AnnotationAssertion(Annotation(rdfs:label "Phospho-JAK2 phosphorylates EPOR") "Reactome:R-HSA-9006323") AnnotationAssertion(Annotation(rdfs:label "JAK2 transphosphorylates and is activated in response to Erythropoietin") "Reactome:R-HSA-9006332") @@ -51665,10 +54485,12 @@ AnnotationAssertion(Annotation(rdfs:label "ALK mutants phosphorylate STAT3") "Reactome:R-HSA-9712086") AnnotationAssertion(Annotation(rdfs:label "ALK fusions phosphorylate FRS") "Reactome:R-HSA-9712087") AnnotationAssertion(Annotation(rdfs:label "SRC phosphorylates RHOU") "Reactome:R-HSA-9726848") +AnnotationAssertion(Annotation(rdfs:label "JAK1-mediated phosphorylation of RAF1") "Reactome:R-HSA-9732738") AnnotationAssertion(Annotation(rdfs:label "CSF1R trans-autophosphorylates on tyrosine-561") "Reactome:R-HSA-9733314") AnnotationAssertion(Annotation(rdfs:label "Src family kinases phosphorylate CBL in CSF1 dimer:p-Y561-CSF1R dimer:CBL") "Reactome:R-HSA-9733323") -AnnotationAssertion(Annotation(rdfs:label "BACH1 is phosphorylated at tyrosine 486") "Reactome:R-HSA-9762209") +AnnotationAssertion(Annotation(rdfs:label "BACH1 is phosphorylated at tyrosine 483") "Reactome:R-HSA-9762209") AnnotationAssertion(Annotation(rdfs:label "JAK2 phosphorylation of GHR") "Reactome:R-HSA-982807") +AnnotationAssertion(Annotation(rdfs:label "SH pentamer is phosphorylated") "Reactome:R-HSA-9831136") AnnotationAssertion(Annotation(rdfs:label "p-6Y-SYK phosphorylates BLNK (SLP65)") "Reactome:R-HSA-983703") AnnotationAssertion(Annotation(rdfs:label "SYK autophosphorylates at the activated BCR") "Reactome:R-HSA-983707") AnnotationAssertion(Annotation(rdfs:label "LYN, FYN, BLK phosphorylate ITAMs of Ig-alpha (CD79A) and Ig-beta (CD79B)") "Reactome:R-HSA-983709") @@ -51692,6 +54514,7 @@ AnnotationAssertion(Annotation(rdfs:label "TrkA receptor autophosphorylates") "Reactome:R-HSA-167019") AnnotationAssertion(Annotation(rdfs:label "TrkA phosphorylates PLCG1") "Reactome:R-HSA-167683") AnnotationAssertion(Annotation(rdfs:label "ARMS is phosphorylated by active TrkA receptor") "Reactome:R-HSA-169905") +AnnotationAssertion(Annotation(rdfs:label "GAB1 phosphorylation by EGFR kinase") "Reactome:R-HSA-177930") AnnotationAssertion(Annotation(rdfs:label "SHC1 phosphorylation by phosphorylated EGFR") "Reactome:R-HSA-177933") AnnotationAssertion(Annotation(rdfs:label "TRKA phosphorylates IRS") "Reactome:R-HSA-198295") AnnotationAssertion(Annotation(rdfs:label "p-Y-JAK1,p-Y-TYK2 phosphorylate IL10RA") "Reactome:R-HSA-6784324") @@ -52003,8 +54826,6 @@ SubClassOf( "GOC:ai") Annotation( "GOC:dgf") "Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.") AnnotationAssertion( "GO:0005478") -AnnotationAssertion(Annotation(rdfs:label "Virion-associated M2 protein mediated ion infusion") "Reactome:R-HSA-168313") -AnnotationAssertion(Annotation(rdfs:label "SMAD7:SMURF1 complex is exported to the cytosol") "Reactome:R-HSA-178215") AnnotationAssertion( "molecular_function") AnnotationAssertion( "carrier") AnnotationAssertion( "GO:0005215") @@ -52012,13 +54833,16 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Some transporters, such as certain members of the SLC family, are referred to as 'carriers'; however GO uses carrier with a different meaning: a carrier binds to and transports the substance (see GO:0140104 molecular carrier activity), whereas a transporter forms some pore that allows the passing of molecules.") AnnotationAssertion(rdfs:label "transporter activity") SubClassOf( ) @@ -52082,6 +54906,21 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (phosphate transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:mtg_transport") "Enables the transfer of phosphate ions from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27121"^^xsd:anyURI) +AnnotationAssertion( "GO:0005317") +AnnotationAssertion( "GO:1901677") +AnnotationAssertion( "RHEA:32823") +AnnotationAssertion( "inorganic phosphate transmembrane transporter activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0005315") +AnnotationAssertion(rdfs:label "phosphate transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (lipid transporter activity) AnnotationAssertion(Annotation( "GOC:ai") "Enables the directed movement of lipids into, out of or within a cell, or between cells.") @@ -52191,7 +55030,7 @@ AnnotationAssertion( "galactose/glucose (methylgalactoside) porter activity") AnnotationAssertion( "GO:0005355") AnnotationAssertion(rdfs:label "glucose transmembrane transporter activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) # Class: (water transmembrane transporter activity) @@ -52299,9 +55138,12 @@ AnnotationAssertion( "GO:0005515") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "protein binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -52330,7 +55172,7 @@ AnnotationAssertion(Annotation( "molecular_function") AnnotationAssertion( "GO:0005536") AnnotationAssertion(rdfs:label "glucose binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (glycosaminoglycan binding) @@ -52408,13 +55250,16 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is intended to annotate gene products that are not attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular space ; GO:0005615'.") AnnotationAssertion(rdfs:label "extracellular region") @@ -52521,7 +55366,6 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that for multicellular organisms, the extracellular space refers to everything outside a cell, but still within the organism (excluding the extracellular matrix). Gene products from a multi-cellular organism that are secreted from a cell into the interstitial fluid or blood can therefore be annotated to this term.") AnnotationAssertion(rdfs:label "extracellular space") SubClassOf( ) @@ -52560,12 +55404,14 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nucleus") SubClassOf( ) @@ -52605,6 +55451,22 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (transcription regulator complex) + +AnnotationAssertion(Annotation( "GOC:jl") "A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.") +AnnotationAssertion( "jl") +AnnotationAssertion( "2013-08-28T12:11:37Z") +AnnotationAssertion( "GO:0044797") +AnnotationAssertion( "GO:0044798") +AnnotationAssertion( "cellular_component") +AnnotationAssertion( "cytoplasmic transcription factor complex") +AnnotationAssertion( "nuclear transcription factor complex") +AnnotationAssertion( "transcription factor complex") +AnnotationAssertion( "GO:0005667") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transcription regulator complex") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (chromosome) AnnotationAssertion(Annotation( "ISBN:0198547684") "A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.") @@ -52623,6 +55485,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Chromosomes include parts that are not part of the chromatin. Examples include the kinetochore.") AnnotationAssertion(rdfs:label "chromosome") @@ -52660,7 +55523,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cytoplasm") SubClassOf( ) @@ -52718,11 +55583,13 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vacuole") SubClassOf( ) @@ -52761,10 +55628,12 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that the Golgi apparatus can be located in various places in the cytoplasm. In plants and lower animal cells, the Golgi apparatus exists as many copies of discrete stacks dispersed throughout the cytoplasm, while the Golgi apparatus of interphase mammalian cells is a juxtanuclear, often pericentriolar reticulum, where the discrete Golgi stacks are stitched together to form a compact and interconnected ribbon, sometimes called the Golgi ribbon.") AnnotationAssertion(rdfs:label "Golgi apparatus") @@ -52796,6 +55665,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -52819,11 +55689,14 @@ AnnotationAssertion( "GO:0005840") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ribosome") SubClassOf( ) @@ -52841,11 +55714,13 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cytoskeleton") @@ -52951,11 +55826,14 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "plasma membrane") SubClassOf( ) @@ -53122,6 +56000,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -53158,7 +56037,10 @@ SubClassOf( (glycogen biosynthetic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27107"^^xsd:anyURI) AnnotationAssertion( "MetaCyc:GLYCOGENSYNTH-PWY") +AnnotationAssertion( "MetaCyc:PWY-5067") +AnnotationAssertion( "MetaCyc:PWY-7900") AnnotationAssertion( "glycogen anabolism") AnnotationAssertion( "glycogen biosynthesis") AnnotationAssertion( "glycogen formation") @@ -53187,7 +56069,10 @@ SubClassOf( (glycogen catabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27107"^^xsd:anyURI) AnnotationAssertion( "MetaCyc:GLYCOCAT-PWY") +AnnotationAssertion( "MetaCyc:PWY-5941") +AnnotationAssertion( "MetaCyc:PWY-7662") AnnotationAssertion( "glycogen breakdown") AnnotationAssertion( "glycogen catabolism") AnnotationAssertion( "glycogen degradation") @@ -53229,7 +56114,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006006") AnnotationAssertion(rdfs:label "glucose metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (glucose catabolic process) @@ -53241,7 +56126,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006007") AnnotationAssertion(rdfs:label "glucose catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (D-ribose metabolic process) @@ -53331,6 +56216,8 @@ EquivalentClasses( ObjectIntersection # Class: (chitin biosynthetic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27107"^^xsd:anyURI) +AnnotationAssertion( "MetaCyc:PWY-6981") AnnotationAssertion( "beta-1,4-linked N-acetylglucosamine biosynthesis") AnnotationAssertion( "beta-1,4-linked N-acetylglucosamine biosynthetic process") AnnotationAssertion( "chitin anabolism") @@ -53345,6 +56232,11 @@ EquivalentClasses( ObjectIntersection # Class: (chitin catabolic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27107"^^xsd:anyURI) +AnnotationAssertion( "MetaCyc:PWY-6855") +AnnotationAssertion( "MetaCyc:PWY-6902") +AnnotationAssertion( "MetaCyc:PWY-7118") +AnnotationAssertion( "MetaCyc:PWY-7822") AnnotationAssertion( "beta-1,4-linked N-acetylglucosamine catabolic process") AnnotationAssertion( "beta-1,4-linked N-acetylglucosamine catabolism") AnnotationAssertion( "chitin breakdown") @@ -53428,12 +56320,15 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "generation of precursor metabolites and energy") SubClassOf( ) @@ -53448,7 +56343,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006094") AnnotationAssertion(rdfs:label "gluconeogenesis") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (regulation of carbohydrate metabolic process) @@ -53653,9 +56548,10 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "DNA metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (DNA catabolic process) @@ -53693,6 +56589,7 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0006310") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -53731,6 +56628,96 @@ AnnotationAssertion( "chromatin organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (DNA-templated transcription) + +AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:txnOH") "The synthesis of an RNA transcript from a DNA template.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/14854"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/16737"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22258"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/22555"^^xsd:anyURI) +AnnotationAssertion( "GO:0001121") +AnnotationAssertion( "GO:0006350") +AnnotationAssertion( "GO:0061018") +AnnotationAssertion( "GO:0061022") +AnnotationAssertion( "cellular transcription") +AnnotationAssertion( "transcription") +AnnotationAssertion( "Wikipedia:Transcription_(genetics)") +AnnotationAssertion( "DNA-dependent transcription") +AnnotationAssertion(Annotation( "GOC:txnOH") "transcription, DNA-dependent") +AnnotationAssertion( "transcription, DNA-templated") +AnnotationAssertion( "bacterial transcription") +AnnotationAssertion( "transcription from bacterial-type RNA polymerase promoter") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0006351") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "DNA-templated transcription") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (regulation of DNA-templated transcription) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/25256"^^xsd:anyURI) +AnnotationAssertion( "GO:0032583") +AnnotationAssertion( "GO:0045449") +AnnotationAssertion( "GO:0061019") +AnnotationAssertion( "transcriptional control") +AnnotationAssertion( "regulation of cellular transcription, DNA-dependent") +AnnotationAssertion(Annotation( "GOC:txnOH") "regulation of transcription, DNA-dependent") +AnnotationAssertion( "regulation of transcription, DNA-templated") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "regulation of gene-specific transcription") +AnnotationAssertion( "GO:0006355") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "regulation of DNA-templated transcription") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (regulation of transcription by RNA polymerase II) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.") +AnnotationAssertion( "GO:0006358") +AnnotationAssertion( "GO:0010551") +AnnotationAssertion( "regulation of transcription from Pol II promoter") +AnnotationAssertion( "regulation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "global transcription regulation from Pol II promoter") +AnnotationAssertion( "regulation of gene-specific transcription from RNA polymerase II promoter") +AnnotationAssertion( "regulation of global transcription from Pol II promoter") +AnnotationAssertion( "regulation of transcription from RNA polymerase II promoter, global") +AnnotationAssertion( "GO:0006357") +AnnotationAssertion(rdfs:label "regulation of transcription by RNA polymerase II") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (transcription by RNA polymerase II) + +AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:txnOH") Annotation( "ISBN:0321000382") "The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/14854"^^xsd:anyURI) +AnnotationAssertion( "GO:0032568") +AnnotationAssertion( "GO:0032569") +AnnotationAssertion( "transcription from Pol II promoter") +AnnotationAssertion( "transcription from RNA polymerase II promoter") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "RNA polymerase II transcription factor activity") +AnnotationAssertion( "gene-specific transcription from RNA polymerase II promoter") +AnnotationAssertion( "general transcription from RNA polymerase II promoter") +AnnotationAssertion(Annotation( "GOC:mah") "specific transcription from RNA polymerase II promoter") +AnnotationAssertion( "GO:0006366") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transcription by RNA polymerase II") +SubClassOf( ) + # Class: (RNA catabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.") @@ -53796,12 +56783,14 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "translation") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -53957,7 +56946,7 @@ AnnotationAssertion( "GO:0006518") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peptide metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (amino acid metabolic process) @@ -53976,6 +56965,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "amino acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -54162,13 +57152,16 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lipid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -54619,7 +57612,7 @@ SubClassOf( (phosphorus metabolic process) -AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4).") +AnnotationAssertion(Annotation( "GOC:ai") "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus.") AnnotationAssertion( "phosphorus metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0006793") @@ -54669,7 +57662,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term, for e.g. to transmembrane transport, to microtubule-based transport or to vesicle-mediated transport.") AnnotationAssertion(rdfs:label "transport") SubClassOf( ) @@ -54729,12 +57724,12 @@ EquivalentClasses( ObjectIntersection # Class: (phosphate ion transport) -AnnotationAssertion(Annotation( "GOC:krc") "The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion(Annotation( "GOC:krc") "The directed movement of phosphate ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") AnnotationAssertion( "biological_process") AnnotationAssertion( "phosphate transport") AnnotationAssertion( "GO:0006817") AnnotationAssertion(rdfs:label "phosphate ion transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (iron ion transport) @@ -54862,7 +57857,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "amino acid transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (lipid transport) @@ -55247,12 +58242,12 @@ AnnotationAssertion( "response to abiotic stress") AnnotationAssertion( "response to biotic stress") AnnotationAssertion( "GO:0006950") -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "response to stress") SubClassOf( ) @@ -55550,6 +58545,7 @@ SubClassOf( (lysosome organization) AnnotationAssertion(Annotation( "GOC:mah") "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lysosome. A lysosome is a cytoplasmic, membrane-bounded organelle that is found in most animal cells and that contains a variety of hydrolases.") +AnnotationAssertion( ) AnnotationAssertion( "lysosome organisation") AnnotationAssertion( "biological_process") AnnotationAssertion(Annotation( "GOC:mah") "lysosome organization and biogenesis") @@ -55557,15 +58553,22 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lysosome organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (lysosomal transport) AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of substances into, out of or within a lysosome.") +AnnotationAssertion( ) AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0007041") AnnotationAssertion(rdfs:label "lysosomal transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (cell-cell junction assembly) @@ -55583,13 +58586,14 @@ AnnotationAssertion( "cell-division cycle") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0007049") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell cycle") SubClassOf( ) @@ -55763,6 +58767,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -55826,20 +58831,17 @@ AnnotationAssertion( "GO:0023033") AnnotationAssertion( "GO:0023045") AnnotationAssertion( "Wikipedia:Signal_transduction") -AnnotationAssertion( "signal transduction by cis-phosphorylation") -AnnotationAssertion( "signal transduction by conformational transition") -AnnotationAssertion( "signal transduction by protein phosphorylation") -AnnotationAssertion( "signal transduction by trans-phosphorylation") AnnotationAssertion( "signaling cascade") AnnotationAssertion( "signalling cascade") AnnotationAssertion( "biological_process") AnnotationAssertion( "signaling pathway") -AnnotationAssertion(Annotation( "GOC:mah") "signalling pathway") +AnnotationAssertion( "signalling pathway") AnnotationAssertion( "GO:0007165") AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not.") AnnotationAssertion(rdfs:label "signal transduction") SubClassOf( ) @@ -55850,7 +58852,8 @@ SubClassOf( ObjectSomeValuesFrom( (cell surface receptor signaling pathway) -AnnotationAssertion(Annotation( "GOC:bf") Annotation( "GOC:mah") Annotation( "GOC:pr") Annotation( "GOC:signaling") "The series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.") +AnnotationAssertion(Annotation( "GOC:signaling") "The series of molecular signals initiated by an extracellular ligand binding to a receptor located on the cell surface. The pathway ends with regulation of a downstream cellular process, e.g. transcription.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26960") AnnotationAssertion( "cell surface receptor linked signal transduction") AnnotationAssertion(Annotation( "GOC:bf") "cell surface receptor linked signaling pathway") AnnotationAssertion(Annotation( "GOC:mah") "cell surface receptor linked signalling pathway") @@ -55870,13 +58873,15 @@ AnnotationAssertion( "enzyme-linked receptor protein signaling pathway") SubClassOf( ) -# Class: (transmembrane receptor protein tyrosine kinase signaling pathway) +# Class: (cell surface receptor protein tyrosine kinase signaling pathway) AnnotationAssertion(Annotation( "GOC:ceb") Annotation( "GOC:signaling") "The series of molecular signals initiated by an extracellular ligand binding to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with the regulation of a downstream cellular process, e.g. transcription.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26955"^^xsd:anyURI) +AnnotationAssertion( "transmembrane receptor protein serine/threonine kinase signaling pathway") AnnotationAssertion( "transmembrane receptor protein tyrosine kinase signalling pathway") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0007169") -AnnotationAssertion(rdfs:label "transmembrane receptor protein tyrosine kinase signaling pathway") +AnnotationAssertion(rdfs:label "cell surface receptor protein tyrosine kinase signaling pathway") SubClassOf( ) # Class: (G protein-coupled receptor signaling pathway) @@ -56778,6 +59783,7 @@ SubClassOf( ObjectSomeValuesFrom( (heart development) AnnotationAssertion(Annotation( "GOC:jid") Annotation( "UBERON:0000948") "The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.") +AnnotationAssertion( ) AnnotationAssertion( "GO:0007511") AnnotationAssertion( "Wikipedia:Heart_development") AnnotationAssertion( "dorsal vessel development") @@ -57117,7 +60123,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "single-organism behavior") AnnotationAssertion( "GO:0007610") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews. @@ -57198,6 +60204,7 @@ AnnotationAssertion( "GO:0007623") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "circadian rhythm") SubClassOf( ) @@ -57483,6 +60490,7 @@ SubClassOf( (metabolic process) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0198547684") "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "jl") AnnotationAssertion( "2012-10-17T15:46:40Z") AnnotationAssertion( "GO:0044236") @@ -57495,11 +60503,13 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "single-organism metabolic process") AnnotationAssertion( "GO:0008152") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.") AnnotationAssertion(rdfs:label "metabolic process") SubClassOf( ) @@ -57630,6 +60640,17 @@ AnnotationAssertion( "G protein-coupled amine receptor activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (secondary active sulfate transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:mtg_transport") "Enables the secondary active transfer of sulfate from one side of a membrane to the other. Secondary active transport is the transfer of a solute across a membrane, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters.") +AnnotationAssertion( "secondary active sulphate transmembrane transporter activity") +AnnotationAssertion( "sulphate porter activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "sulfate porter activity") +AnnotationAssertion( "GO:0008271") +AnnotationAssertion(rdfs:label "secondary active sulfate transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (sulfate transport) AnnotationAssertion(Annotation( "GOC:krc") "The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") @@ -57736,12 +60757,15 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "lipid binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -57898,6 +60922,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:bf") Annotation( "GOC:jl") "The orderly movement of a cell specialized to produce haploid gametes through the embryo from its site of production to the place where the gonads will form.") AnnotationAssertion( "germ-cell migration") +AnnotationAssertion( "pole cell migration") AnnotationAssertion( "biological_process") AnnotationAssertion( "primordial germ cell migration") AnnotationAssertion( "GO:0008354") @@ -58141,6 +61166,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/17904"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27304"^^xsd:anyURI) AnnotationAssertion( "Wikipedia:Amino_acid_synthesis") AnnotationAssertion( "amino acid anabolism") AnnotationAssertion( "amino acid biosynthesis") @@ -58150,7 +61176,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0008652") AnnotationAssertion(rdfs:label "amino acid biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (phospholipid biosynthetic process) @@ -58185,6 +61211,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "catabolic process") SubClassOf( ) @@ -58226,6 +61253,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "biosynthetic process") SubClassOf( ) @@ -58273,7 +61301,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0009063") AnnotationAssertion(rdfs:label "amino acid catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (glutamine family amino acid metabolic process) @@ -59066,7 +62094,7 @@ AnnotationAssertion(Annotation( "response to environmental stimulus") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0009605") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") @@ -59079,7 +62107,7 @@ AnnotationAssertion(Annotation( "response to biotic stress") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0009607") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") @@ -59137,7 +62165,7 @@ AnnotationAssertion( "response to abiotic stress") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0009628") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") @@ -59209,7 +62237,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:sm") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0009719") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "response to endogenous stimulus") @@ -59218,6 +62246,7 @@ SubClassOf( (response to hormone) AnnotationAssertion(Annotation( "GOC:jl") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.") +AnnotationAssertion( ) AnnotationAssertion(Annotation( "GOC:dos") "response to hormone stimulus") AnnotationAssertion( "biological_process") AnnotationAssertion( "growth regulator") @@ -59225,6 +62254,9 @@ AnnotationAssertion( "response to hormone") SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (response to carbohydrate) @@ -59251,17 +62283,21 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0009749") AnnotationAssertion(rdfs:label "response to glucose") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (hormone-mediated signaling pathway) AnnotationAssertion(Annotation( "GOC:sm") "The series of molecular signals mediated by the detection of a hormone.") +AnnotationAssertion( ) AnnotationAssertion( "hormone mediated signalling") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0009755") AnnotationAssertion(rdfs:label "hormone-mediated signaling pathway") SubClassOf( ) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (regulation of asymmetric cell division) @@ -59281,7 +62317,7 @@ AnnotationAssertion( "embryonal development") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0009790") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "embryo development") @@ -59651,6 +62687,19 @@ SubClassOf( ) SubClassOf( ) +# Class: (proton motive force dependent protein transmembrane transporter activity) + +AnnotationAssertion(Annotation( "PMID:11526245") Annotation( "PMID:25494301") "Catalysis of the transfer of proteins from one side of a membrane to the other. Transportation is dependent on pH gradient across the membrane.") +AnnotationAssertion( "GO:0015557") +AnnotationAssertion( "arginine targeting transmembrane transporter activity") +AnnotationAssertion( "delta-pH-dependent protein transporter activity") +AnnotationAssertion( "pH-dependent protein transporter activity") +AnnotationAssertion( "twin-arginine targeting transmembrane transporter activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0009977") +AnnotationAssertion(rdfs:label "proton motive force dependent protein transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (cellular process) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:isa_complete") "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.") @@ -59805,6 +62854,14 @@ AnnotationAssertion( "zygote asymmetric cell division") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (regulation of proton transport) + +AnnotationAssertion(Annotation( "GOC:sm") "Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0010155") +AnnotationAssertion(rdfs:label "regulation of proton transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (formation of animal organ boundary) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:isa_complete") Annotation( "PMID:9611175") "The regionalization process that specifies animal organ primordium boundaries resulting in a restriction of organogenesis to a limited spatial domain and keeping the organ separate from surrounding tissues.") @@ -59955,6 +63012,8 @@ AnnotationAssertion( "GOC:cjm") "gene regulation") AnnotationAssertion( "regulation of gene product expression") AnnotationAssertion( "GO:0010468") +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This class covers any process that regulates the rate of production of a mature gene product, and so includes processes that regulate that rate by regulating the level, stability or availability of intermediates in the process of gene expression. For example, it covers any process that regulates the level, stability or availability of mRNA or circRNA for translation and thereby regulates the rate of production of the encoded protein via translation.") AnnotationAssertion(rdfs:label "regulation of gene expression") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -61187,9 +64246,11 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term should be used to annotate gene products in the organism undergoing the programmed cell death. To annotate genes in another organism whose products modulate programmed cell death in a host organism, consider the term 'modulation by symbiont of host programmed cell death ; GO:0052040'. Also, note that 'programmed cell death ; GO:0012501' should be used to refer to instances of caspase-independent cell death mechanisms, in the absence of further indications on the process taking place. At present, caspase-independent cell death is not yet represented in GO due to the lack of consensus and in-depth research on the topic. 'programmed cell death ; GO:0012501' may also be used to annotate gene products in taxa where apoptosis as defined in GO:0006915 does not occur, such as plants. You may also consider these specific children: GO:0097468 'programmed cell death in response to reactive oxygen species' (with descendants GO:0010421 'hydrogen peroxide-mediated programmed cell death' and GO:0010343 'singlet oxygen-mediated programmed cell death'), and GO:0009626 'plant-type hypersensitive response' and its children.") AnnotationAssertion(rdfs:label "programmed cell death") @@ -62258,6 +65319,23 @@ AnnotationAssertion(rdfs:label "mono EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (proton transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of a proton from one side of a membrane to the other.") +AnnotationAssertion(Annotation(rdfs:label "Intraphagosomal pH is lowered to 5 by V-ATPase") "Reactome:R-HSA-1222516") +AnnotationAssertion(Annotation(rdfs:label "Enzyme-bound ATP is released") "Reactome:R-HSA-164834") +AnnotationAssertion(Annotation(rdfs:label "Virion-associated M2 protein mediated ion infusion") "Reactome:R-HSA-168313") +AnnotationAssertion(Annotation(rdfs:label "Protons are translocated from the intermembrane space to the matrix") "Reactome:R-HSA-170026") +AnnotationAssertion(Annotation(rdfs:label "Endosome acidification") "Reactome:R-HSA-74723") +AnnotationAssertion(Annotation(rdfs:label "Acidification of Tf:TfR1 containing endosome") "Reactome:R-HSA-917841") +AnnotationAssertion( "hydrogen ion transmembrane transporter activity") +AnnotationAssertion( "proton transporter activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0015078") +AnnotationAssertion(rdfs:label "proton transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (sodium ion transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:ai") Annotation( "RHEA:34963") "Enables the transfer of sodium ions (Na+) from one side of a membrane to the other.") @@ -62275,6 +65353,8 @@ SubClassOf( ObjectSomeValuesFrom( (calcium ion transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:dgf") Annotation( "RHEA:29671") "Enables the transfer of calcium (Ca) ions from one side of a membrane to the other.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26941"^^xsd:anyURI) +AnnotationAssertion( "MetaCyc:TRANS-RXN-144") AnnotationAssertion( "RHEA:29671") AnnotationAssertion(Annotation(rdfs:label "CatSper Channel Mediated Calcium Transport") "Reactome:R-HSA-2534359") AnnotationAssertion( "molecular_function") @@ -62315,8 +65395,10 @@ SubClassOf( ObjectSomeValuesFrom( (bicarbonate transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of bicarbonate from one side of a membrane to the other. Bicarbonate is the hydrogencarbonate ion, HCO3-.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26780"^^xsd:anyURI) AnnotationAssertion( "RHEA:28695") AnnotationAssertion(Annotation(rdfs:label "BESTs transport cytosolic HCO3- to extracellular region") "Reactome:R-HSA-2752067") +AnnotationAssertion( "hydrogencarbonate transmembrane transporter activity") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0015106") AnnotationAssertion(rdfs:label "bicarbonate transmembrane transporter activity") @@ -62324,21 +65406,6 @@ EquivalentClasses( ObjectIntersection SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (phosphate ion transmembrane transporter activity) - -AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of phosphate (PO4 3-) ions from one side of a membrane to the other.") -AnnotationAssertion( "pr") -AnnotationAssertion( "2012-11-22T15:43:10Z") -AnnotationAssertion( "GO:1901677") -AnnotationAssertion( "RHEA:32823") -AnnotationAssertion( "molecular_function") -AnnotationAssertion(Annotation( "GOC:vw") "phosphate transmembrane transporter activity") -AnnotationAssertion( "GO:0015114") -AnnotationAssertion(rdfs:label "phosphate ion transmembrane transporter activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (sulfate transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other.") @@ -62382,6 +65449,7 @@ SubClassOf( ObjectSomeValuesFrom( (bilirubin transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "ISBN:0198547684") "Enables the transfer of bilirubin from one side of a membrane to the other. Bilirubin is a linear tetrapyrrole produced in the reticuloendothelial system from biliverdin and transported to the liver as a complex with serum albumin. In the liver, bilirubin is converted to bilirubin bisglucuronide, which is excreted in the bile.") +AnnotationAssertion( ) AnnotationAssertion(Annotation(rdfs:label "Defective ABCC2 does not transport BMG,BDG from cytosol to extracellular region") "Reactome:R-HSA-5679031") AnnotationAssertion(Annotation(rdfs:label "ABCC2 transports BMG,BDG from cytosol to extracellular region") "Reactome:R-HSA-5679041") AnnotationAssertion(Annotation(rdfs:label "ABCG2 tetramer transports BMG,BDG from cytosol to extracellular region") "Reactome:R-HSA-9661417") @@ -62389,7 +65457,10 @@ AnnotationAssertion( "GO:0015127") AnnotationAssertion(rdfs:label "bilirubin transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (carbohydrate transmembrane transporter activity) @@ -62500,7 +65571,7 @@ AnnotationAssertion( "hydroxy/aromatic amino acid permease activity") AnnotationAssertion( "GO:0015171") AnnotationAssertion(rdfs:label "amino acid transmembrane transporter activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) # Class: (acidic amino acid transmembrane transporter activity) @@ -62632,6 +65703,31 @@ AnnotationAssertion(rdfs:label "fatt EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (secondary active transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:mtg_transport") Annotation( "ISBN:0198506732") Annotation( "ISBN:0815340729") Annotation( "PMID:10839820") "Enables the transfer of a solute from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy, not direct ATP coupling. Secondary active transporters include symporters and antiporters.") +AnnotationAssertion( "GO:0015290") +AnnotationAssertion( "GO:0015353") +AnnotationAssertion( "GO:0015404") +AnnotationAssertion( "GO:0015570") +AnnotationAssertion( "active transporter") +AnnotationAssertion( "TC:2.A") +AnnotationAssertion( "coupled carrier") +AnnotationAssertion( "electrochemical potential-driven transporter activity") +AnnotationAssertion( "porter activity") +AnnotationAssertion( "porters") +AnnotationAssertion( "secondary carrier-type facilitators") +AnnotationAssertion( "energizer of outer membrane receptor-mediated transport activity") +AnnotationAssertion( "heavy metal ion porter activity") +AnnotationAssertion( "ion-gradient-driven energizer activity") +AnnotationAssertion( "multidrug endosomal transmembrane transporter activity") +AnnotationAssertion( "nitrite/nitrate porter activity") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "galactose/glucose (methylgalactoside) porter activity") +AnnotationAssertion( "GO:0015291") +AnnotationAssertion(rdfs:label "secondary active transmembrane transporter activity") +SubClassOf( ) + # Class: (inorganic molecular entity transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:mtg_transport") Annotation( "ISBN:0815340729") "Enables the transfer of an inorganic molecular entity from the outside of a cell to the inside of the cell across a membrane. An inorganic molecular entity is a molecular entity that contains no carbon.") @@ -62644,6 +65740,26 @@ AnnotationAssertion( "inorganic molecular entity transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (bilirubin secondary active transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:mtg_transport") "Enables the transfer of bilirubin from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters.") +AnnotationAssertion( "bilitranslocase") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "bilirubin porter activity") +AnnotationAssertion( "GO:0015351") +AnnotationAssertion(rdfs:label "bilirubin secondary active transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (secondary active monocarboxylate transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:bf") Annotation( "GOC:jl") "Catalysis of the movement of a monocarboxylate, any compound containing a single carboxyl group (COOH or COO-), by uniport, symport or antiport across a membrane by a carrier-mediated mechanism.") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "monocarboxylate porter activity") +AnnotationAssertion( "GO:0015355") +AnnotationAssertion(rdfs:label "secondary active monocarboxylate transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (acetylcholine receptor activity) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:signaling") "Combining with an acetylcholine receptor ligand and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.") @@ -62660,7 +65776,9 @@ SubClassOf( ObjectSomeValuesFrom( (formate transmembrane transporter activity) AnnotationAssertion(Annotation( "GOC:ai") "Enables the transfer of formate from one side of a membrane to the other. Formate is also known as methanoate, the anion HCOO- derived from methanoic (formic) acid.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26941"^^xsd:anyURI) AnnotationAssertion( "GO:0015659") +AnnotationAssertion( "MetaCyc:TRANS-RXN-1") AnnotationAssertion( "RHEA:29679") AnnotationAssertion( "formate uptake permease activity") AnnotationAssertion( "molecular_function") @@ -62814,6 +65932,8 @@ EquivalentClasses( ObjectIntersection # Class: (bicarbonate transport) AnnotationAssertion(Annotation( "GOC:krc") "The directed movement of bicarbonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26780"^^xsd:anyURI) +AnnotationAssertion( "hydrogencarbonate transport") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0015701") AnnotationAssertion(rdfs:label "bicarbonate transport") @@ -62852,10 +65972,14 @@ SubClassOf( (bilirubin transport) AnnotationAssertion(Annotation( "GOC:krc") "The directed movement of bilirubin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.") +AnnotationAssertion( ) AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0015723") AnnotationAssertion(rdfs:label "bilirubin transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (formate transport) @@ -62959,7 +66083,7 @@ AnnotationAssertion( "GO:0015833") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peptide transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ) @@ -63288,10 +66412,12 @@ AnnotationAssertion( "biological_process") AnnotationAssertion(Annotation( "GOC:mah") "cell organization and biogenesis") AnnotationAssertion( "GO:0016043") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cellular component organization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -63436,6 +66562,7 @@ AnnotationAssertion( "GO:0016070") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -63659,6 +66786,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -63687,6 +66815,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term.") AnnotationAssertion(rdfs:label "kinase activity") @@ -63696,9 +66825,11 @@ SubClassOf( ObjectHasSelf( (phosphorylation) AnnotationAssertion(Annotation( "ISBN:0198506732") "The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "Wikipedia:Phosphorylation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0016310") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "phosphorylation") @@ -63756,10 +66887,14 @@ SubClassOf( (somatic cell DNA recombination) AnnotationAssertion(Annotation( "GOC:ma") "Recombination occurring within or between DNA molecules in somatic cells.") +AnnotationAssertion( ) AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0016444") AnnotationAssertion(rdfs:label "somatic cell DNA recombination") SubClassOf( ) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (somatic diversification of immunoglobulins) @@ -63902,7 +67037,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "amino acid binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (transferase activity) @@ -64035,6 +67170,24 @@ AnnotationAssertion(rdfs:label "pept EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (transcription repressor complex) + +AnnotationAssertion(Annotation( "GOC:mah") "A protein complex that possesses activity that prevents or downregulates transcription.") +AnnotationAssertion( "tb") +AnnotationAssertion( "2014-05-09T13:23:51Z") +AnnotationAssertion( "GO:0090568") +AnnotationAssertion( "GO:0090569") +AnnotationAssertion(Annotation( "GOC:bhm") "transcription factor inhibitor complex") +AnnotationAssertion( "transcriptional repressor complex") +AnnotationAssertion( "cellular_component") +AnnotationAssertion( "cytoplasmic transcriptional repressor complex") +AnnotationAssertion( "nuclear transcriptional repressor complex") +AnnotationAssertion( "GO:0017053") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transcription repressor complex") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + # Class: (purine nucleotide binding) AnnotationAssertion(Annotation( "GOC:ai") "Binding to a purine nucleotide, a compound consisting of a purine nucleoside esterified with (ortho)phosphate.") @@ -64213,7 +67366,7 @@ AnnotationAssertion( "single-organism reproductive behavior") AnnotationAssertion( "GO:0019098") AnnotationAssertion(rdfs:label "reproductive behavior") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( )) # Class: (transmembrane receptor protein kinase activity) @@ -64580,6 +67733,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "protein metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -64627,9 +67781,11 @@ EquivalentClasses( ObjectIntersection # Class: (organophosphate metabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving organophosphates, any phosphate-containing organic compound.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26992"^^xsd:anyURI) AnnotationAssertion( "organophosphate metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0019637") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organophosphate metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -64716,6 +67872,7 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0019725") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cellular homeostasis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -64753,8 +67910,10 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0019748") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "secondary metabolic process") SubClassOf( ) @@ -64879,7 +68038,7 @@ AnnotationAssertion( "GO:0019953") AnnotationAssertion(rdfs:comment "Note that gametes may come from two organisms or from a single organism in the case of self-fertilizing hermaphrodites, e.g. C. elegans, or self-fertilization in plants. Note also that sexual reproduction may be seen as the regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times.") AnnotationAssertion(rdfs:label "sexual reproduction") -SubClassOf( ) +SubClassOf( ) # Class: (cytokine binding) @@ -68112,6 +71271,7 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0022402") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell cycle process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -68211,22 +71371,30 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0022412") AnnotationAssertion(rdfs:label "cellular process involved in reproduction in multicellular organism") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( )) SubClassOf( ) -SubClassOf( ) # Class: (reproductive process) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:isa_complete") "A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27054"^^xsd:anyURI) AnnotationAssertion( "jl") AnnotationAssertion( "2012-09-19T15:56:06Z") AnnotationAssertion( "GO:0044702") +AnnotationAssertion( "Wikipedia:Reproduction") AnnotationAssertion( "biological_process") AnnotationAssertion( "single organism reproductive process") AnnotationAssertion( "GO:0022414") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "reproductive process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) DisjointClasses( ) # Class: (digestive system process) @@ -68294,6 +71462,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0022607") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cellular component assembly") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -68392,6 +71561,7 @@ AnnotationAssertion( "GO:0022892") AnnotationAssertion(Annotation(rdfs:label "Egress of internalized antigen to the cytosol via sec61") "Reactome:R-HSA-1236947") AnnotationAssertion(Annotation(rdfs:label "SLC2A9 transports Fru, Glc, urate") "Reactome:R-HSA-429036") +AnnotationAssertion(Annotation(rdfs:label "MATEs mediate extrusion of xenobiotics") "Reactome:R-HSA-434650") AnnotationAssertion(Annotation(rdfs:label "Defective SLC2A9 does not transport Fru, Glc, urate") "Reactome:R-HSA-5638209") AnnotationAssertion(Annotation(rdfs:label "Fe3+ dissociates from SLC22A17:LCN2:2,5DHBA") "Reactome:R-HSA-5671707") AnnotationAssertion(Annotation(rdfs:label "An unknown carrier transports cytosolic glyoxylate to the peroxisome") "Reactome:R-HSA-6784434") @@ -68498,11 +71668,13 @@ AnnotationAssertion(Annotation( "single organism signaling") AnnotationAssertion( "GO:0023052") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change.") AnnotationAssertion(rdfs:label "signaling") @@ -68750,6 +71922,8 @@ AnnotationAssertion( "GO:0030097") AnnotationAssertion(rdfs:label "hemopoiesis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectAllValuesFrom( )) # Class: (lymphocyte differentiation) @@ -68864,6 +72038,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell differentiation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -69101,6 +72276,8 @@ SubClassOf( ObjectSomeValuesFrom( (chondroitin sulfate biosynthetic process) AnnotationAssertion(Annotation( "GOC:mah") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the formation of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27107"^^xsd:anyURI) +AnnotationAssertion( "MetaCyc:PWY-6567") AnnotationAssertion( "chondroitin sulfate anabolism") AnnotationAssertion( "chondroitin sulfate biosynthesis") AnnotationAssertion( "chondroitin sulfate formation") @@ -69116,6 +72293,9 @@ SubClassOf( ObjectSomeValuesFrom( (chondroitin sulfate catabolic process) AnnotationAssertion(Annotation( "GOC:mah") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of chondroitin sulfate, any member of a group of 10-60 kDa glycosaminoglycans, widely distributed in cartilage and other mammalian connective tissues, the repeat units of which consist of beta-(1,4)-linked D-glucuronyl beta-(1,3)-N-acetyl-D-galactosamine sulfate.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27107"^^xsd:anyURI) +AnnotationAssertion( "MetaCyc:PWY-6572") +AnnotationAssertion( "MetaCyc:PWY-6573") AnnotationAssertion( "chondroitin sulfate breakdown") AnnotationAssertion( "chondroitin sulfate catabolism") AnnotationAssertion( "chondroitin sulfate degradation") @@ -69150,6 +72330,8 @@ EquivalentClasses( ObjectIntersection # Class: (hyaluronan catabolic process) AnnotationAssertion(Annotation( "GOC:mah") Annotation( "ISBN:0198506732") "The chemical reactions and pathways resulting in the breakdown of hyaluronan, the naturally occurring anionic form of hyaluronic acid, any member of a group of glycosaminoglycans, the repeat units of which consist of beta-1,4 linked D-glucuronyl-beta-(1,3)-N-acetyl-D-glucosamine.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27107"^^xsd:anyURI) +AnnotationAssertion( "MetaCyc:PWY-7645") AnnotationAssertion( "hyaluronan breakdown") AnnotationAssertion( "hyaluronan catabolism") AnnotationAssertion( "hyaluronan degradation") @@ -69316,6 +72498,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "carbohydrate binding") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -69854,7 +73037,7 @@ AnnotationAssertion( "GO:0030643") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intracellular phosphate ion homeostasis") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (glucose catabolic process to butyrate) @@ -69864,7 +73047,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0030645") AnnotationAssertion(rdfs:label "glucose catabolic process to butyrate") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (transport vesicle membrane) @@ -70432,6 +73615,7 @@ AnnotationAssertion( "GO:0031012") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -71555,7 +74739,7 @@ AnnotationAssertion( "GO:0031967") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organelle envelope") -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -71579,15 +74763,6 @@ AnnotationAssertion(rdfs:label "memb SubClassOf( ) DisjointClasses( ) -# Class: (envelope) - -AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:pz") "A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers.") -AnnotationAssertion( "cellular_component") -AnnotationAssertion( "GO:0031975") -AnnotationAssertion(rdfs:label "envelope") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) - # Class: (nuclear lumen) AnnotationAssertion(Annotation( "GOC:mah") Annotation( "GOC:pz") "The volume enclosed by the nuclear inner membrane.") @@ -71822,7 +74997,7 @@ EquivalentClasses( ObjectIntersection AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of a response to an external stimulus.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032101") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "regulation of response to external stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -71837,7 +75012,7 @@ AnnotationAssertion( "inhibition of response to external stimulus") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032102") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "negative regulation of response to external stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -71854,7 +75029,7 @@ AnnotationAssertion( "stimulation of response to external stimulus") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032103") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "positive regulation of response to external stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -72916,16 +76091,6 @@ AnnotationAssertion(rdfs:label "deve SubClassOf( ) DisjointClasses( ) -# Class: (multicellular organism reproduction) - -AnnotationAssertion(Annotation( "GOC:isa_complete") Annotation( "GOC:jid") "The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0032504") -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "multicellular organism reproduction") -SubClassOf( ) -SubClassOf( ) - # Class: (maintenance of protein location in cell) AnnotationAssertion(Annotation( "GOC:isa_complete") Annotation( "GOC:mah") "Any process in which a protein is maintained in a specific location within, or in the membrane of, a cell, and is prevented from moving elsewhere.") @@ -73261,9 +76426,11 @@ EquivalentClasses( ObjectIntersection # Class: (regulation of localization) AnnotationAssertion(Annotation( "GOC:mah") "Any process that modulates the frequency, rate or extent of any process in which a cell, a substance, or a cellular entity is transported to, or maintained in, a specific location.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion(Annotation( "GOC:mah") "regulation of localisation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032879") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "regulation of localization") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -73535,7 +76702,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032973") AnnotationAssertion(rdfs:label "amino acid export across plasma membrane") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (amino acid transmembrane export from vacuole) @@ -73545,7 +76712,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032974") AnnotationAssertion(rdfs:label "amino acid transmembrane export from vacuole") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (amino acid transmembrane import into vacuole) @@ -73554,7 +76721,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0032975") AnnotationAssertion(rdfs:label "amino acid transmembrane import into vacuole") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (keratinocyte activation) @@ -73620,7 +76787,7 @@ AnnotationAssertion( "GO:0032989") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cellular anatomical entity morphogenesis") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) # Class: (protein-containing complex) @@ -73635,6 +76802,7 @@ AnnotationAssertion( "GO:0032991") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -75116,7 +78284,7 @@ AnnotationAssertion( "GO:0034487") AnnotationAssertion(rdfs:comment "Note that this term is not intended for use in annotating lateral movement within membranes.") AnnotationAssertion(rdfs:label "vacuolar amino acid transmembrane transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (protein localization to chromosome) @@ -75178,7 +78346,6 @@ AnnotationAssertion( "GO:0034654") AnnotationAssertion(rdfs:label "nucleobase-containing compound biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) # Class: (nucleobase-containing compound catabolic process) @@ -76105,7 +79272,7 @@ AnnotationAssertion( "GO:0035435") AnnotationAssertion(rdfs:comment "Note that this term is not intended for use in annotating lateral movement within membranes.") AnnotationAssertion(rdfs:label "phosphate ion transmembrane transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (cell migration involved in vasculogenesis) @@ -77278,7 +80445,10 @@ AnnotationAssertion( AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0036094") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides.") AnnotationAssertion(rdfs:label "small molecule binding") SubClassOf( ) @@ -77649,6 +80819,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "signaling receptor activity") SubClassOf( ) @@ -78637,11 +81808,12 @@ AnnotationAssertion(Annotation( "response to chemical substance") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042221") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "response to chemical") @@ -78676,6 +81848,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ribosome biogenesis") SubClassOf( ) @@ -78700,7 +81873,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "peptide binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (purine nucleoside metabolic process) @@ -78719,7 +81892,7 @@ AnnotationAssertion(Annotation( "molecular_function") AnnotationAssertion( "GO:0042301") AnnotationAssertion(rdfs:label "phosphate ion binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (molting cycle) @@ -79011,7 +82184,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042414") AnnotationAssertion(rdfs:label "epinephrine metabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (norepinephrine metabolic process) @@ -79041,11 +82214,15 @@ EquivalentClasses( ObjectIntersection # Class: (dopamine metabolic process) AnnotationAssertion(Annotation( "GOC:jl") Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline.") +AnnotationAssertion( ) AnnotationAssertion( "dopamine metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042417") AnnotationAssertion(rdfs:label "dopamine metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (epinephrine biosynthetic process) @@ -79059,7 +82236,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042418") AnnotationAssertion(rdfs:label "epinephrine biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (epinephrine catabolic process) @@ -79072,7 +82249,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0042419") AnnotationAssertion(rdfs:label "epinephrine catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (dopamine catabolic process) @@ -79677,14 +82854,14 @@ SubClassOf( ObjectSomeValuesFrom( (azurophil granule) -AnnotationAssertion(Annotation( "GOC:jl") Annotation( "PMID:17152095") "Primary lysosomal granule found in neutrophil granulocytes. Contains a wide range of hydrolytic enzymes and is released into the extracellular fluid.") +AnnotationAssertion(Annotation( "GOC:jl") Annotation( "PMID:17152095") Annotation( "PMID:28717070") Annotation( "PMID:5914694") Annotation( "WIKIPEDIA:Azurophilic_granule") "Primary lysosomal granule readily stainable with a Romanowsky stain.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27231"^^xsd:anyURI) AnnotationAssertion( "primary granule") AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0042582") AnnotationAssertion(rdfs:label "azurophil granule") SubClassOf( ) SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (germinal vesicle) @@ -79740,7 +82917,7 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0042593") AnnotationAssertion(rdfs:label "glucose homeostasis") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (egg chorion) @@ -80071,10 +83248,12 @@ AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0042995") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell projection") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -80277,7 +83456,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043043") AnnotationAssertion(rdfs:label "peptide biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (otic placode formation) @@ -80522,9 +83701,11 @@ SubClassOf( (ion binding) AnnotationAssertion(Annotation( "GOC:jl") "Binding to an ion, a charged atoms or groups of atoms.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "molecular_function") AnnotationAssertion( "atom binding") AnnotationAssertion( "GO:0043167") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -80576,7 +83757,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043171") AnnotationAssertion(rdfs:label "peptide catabolic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (amine binding) @@ -80637,7 +83818,7 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0043200") AnnotationAssertion(rdfs:label "response to amino acid") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (response to external biotic stimulus) @@ -80686,6 +83867,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organelle") SubClassOf( ) @@ -80910,17 +84092,20 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (contractile fiber) +# Class: (contractile muscle fiber) AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "ISBN:0815316194") "Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27281"^^xsd:anyURI) AnnotationAssertion( "contractile fibre") AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0043292") -AnnotationAssertion(rdfs:label "contractile fiber") +AnnotationAssertion(rdfs:label "contractile muscle fiber") SubClassOf( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectAllValuesFrom( )) # Class: (apical junction complex) @@ -81185,8 +84370,10 @@ SubClassOf( (macromolecule modification) AnnotationAssertion(Annotation( "GOC:go_curators") "The covalent alteration of one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule, resulting in a change in its properties.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0043412") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "macromolecule modification") SubClassOf( ) @@ -81227,6 +84414,27 @@ AnnotationAssertion(rdfs:label "nega EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (negative regulation of DNA-binding transcription factor activity) + +AnnotationAssertion(Annotation( "GOC:jl") "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.") +AnnotationAssertion( "2011-07-15T10:56:12Z") +AnnotationAssertion( "GO:1904168") +AnnotationAssertion( "GO:2000824") +AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "negative regulation of transcription factor activity") +AnnotationAssertion( "down regulation of transcription factor activity") +AnnotationAssertion( "down-regulation of transcription factor activity") +AnnotationAssertion( "downregulation of transcription factor activity") +AnnotationAssertion( "negative regulation of DNA binding transcription factor activity") +AnnotationAssertion( "negative regulation of sequence-specific DNA binding transcription factor activity") +AnnotationAssertion( "inhibition of transcription factor activity") +AnnotationAssertion( "negative regulation of androgen receptor activity") +AnnotationAssertion( "negative regulation of thyroid hormone receptor activity") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0043433") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "negative regulation of DNA-binding transcription factor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (response to peptide hormone) AnnotationAssertion(Annotation( "PMID:11027914") Annotation( "PMID:15134857") Annotation( "Wikipedia:Peptide_hormone") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.") @@ -81507,6 +84715,15 @@ SubClassOf( ObjectComplementOf(Object SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) DisjointClasses( ObjectSomeValuesFrom( )) +# Class: (sequence-specific DNA binding) + +AnnotationAssertion(Annotation( "GOC:jl") "Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.") +AnnotationAssertion( "sequence specific DNA binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0043565") +AnnotationAssertion(rdfs:label "sequence-specific DNA binding") +SubClassOf( ) + # Class: (regulation of respiratory gaseous exchange) AnnotationAssertion(Annotation( "GOC:jl") "Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment.") @@ -81914,7 +85131,10 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0044238") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "primary metabolic process") SubClassOf( ) @@ -81946,12 +85166,15 @@ SubClassOf( (cellular biosynthetic process) AnnotationAssertion(Annotation( "GOC:jl") "The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27052"^^xsd:anyURI) AnnotationAssertion( "cellular anabolism") AnnotationAssertion( "cellular biosynthesis") AnnotationAssertion( "cellular formation") AnnotationAssertion( "cellular synthesis") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0044249") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.") AnnotationAssertion(rdfs:label "cellular biosynthetic process") SubClassOf( ) SubClassOf( ) @@ -82069,6 +85292,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0044283") AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides.") AnnotationAssertion(rdfs:label "small molecule biosynthetic process") SubClassOf( ) @@ -82257,7 +85481,7 @@ AnnotationAssertion( "2014-07-16T13:12:40Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0044848") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that phases are is_a disjoint from other biological processes. happens_during relationships can operate between phases and other biological processes e.g. DNA replication happens_during S phase.") AnnotationAssertion(rdfs:label "biological phase") SubClassOf( ) @@ -82631,6 +85855,7 @@ AnnotationAssertion(Annotation( "GO:0045202") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -84688,6 +87913,56 @@ AnnotationAssertion(rdfs:label "posi EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (negative regulation of DNA-templated transcription) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.") +AnnotationAssertion( "GO:0016481") +AnnotationAssertion( "GO:0032582") +AnnotationAssertion( "GO:0061021") +AnnotationAssertion( "down regulation of transcription, DNA-dependent") +AnnotationAssertion( "down-regulation of transcription, DNA-dependent") +AnnotationAssertion( "downregulation of transcription, DNA-dependent") +AnnotationAssertion( "negative regulation of cellular transcription, DNA-dependent") +AnnotationAssertion(Annotation( "GOC:txnOH") "negative regulation of transcription, DNA-dependent") +AnnotationAssertion( "negative regulation of transcription, DNA-templated") +AnnotationAssertion( "inhibition of transcription, DNA-dependent") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "down regulation of gene-specific transcription") +AnnotationAssertion( "down-regulation of gene-specific transcription") +AnnotationAssertion( "downregulation of gene-specific transcription") +AnnotationAssertion( "inhibition of gene-specific transcription") +AnnotationAssertion( "negative regulation of gene-specific transcription") +AnnotationAssertion( "transcription repressor activity") +AnnotationAssertion( "GO:0045892") +AnnotationAssertion(rdfs:label "negative regulation of DNA-templated transcription") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of DNA-templated transcription) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.") +AnnotationAssertion( "GO:0043193") +AnnotationAssertion( "GO:0045941") +AnnotationAssertion( "GO:0061020") +AnnotationAssertion( "positive regulation of cellular transcription, DNA-dependent") +AnnotationAssertion(Annotation( "GOC:txnOH") "positive regulation of transcription, DNA-dependent") +AnnotationAssertion( "positive regulation of transcription, DNA-templated") +AnnotationAssertion( "up regulation of transcription, DNA-dependent") +AnnotationAssertion( "up-regulation of transcription, DNA-dependent") +AnnotationAssertion( "upregulation of transcription, DNA-dependent") +AnnotationAssertion( "activation of transcription, DNA-dependent") +AnnotationAssertion( "stimulation of gene-specific transcription") +AnnotationAssertion( "stimulation of transcription, DNA-dependent") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "activation of gene-specific transcription") +AnnotationAssertion( "positive regulation of gene-specific transcription") +AnnotationAssertion( "transcription activator activity") +AnnotationAssertion( "up regulation of gene-specific transcription") +AnnotationAssertion( "up-regulation of gene-specific transcription") +AnnotationAssertion( "upregulation of gene-specific transcription") +AnnotationAssertion( "GO:0045893") +AnnotationAssertion(rdfs:label "positive regulation of DNA-templated transcription") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (negative regulation of translational elongation) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of translational elongation.") @@ -85104,6 +88379,31 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) +# Class: (positive regulation of transcription by RNA polymerase II) + +AnnotationAssertion(Annotation( "GOC:go_curators") Annotation( "GOC:txnOH") "Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.") +AnnotationAssertion( "GO:0010552") +AnnotationAssertion( "GO:0045817") +AnnotationAssertion( "activation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "positive regulation of transcription from Pol II promoter") +AnnotationAssertion( "positive regulation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "stimulation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "up regulation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "up-regulation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "upregulation of transcription from RNA polymerase II promoter") +AnnotationAssertion( "stimulation of global transcription from RNA polymerase II promoter") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "activation of global transcription from RNA polymerase II promoter") +AnnotationAssertion( "positive regulation of gene-specific transcription from RNA polymerase II promoter") +AnnotationAssertion( "positive regulation of global transcription from Pol II promoter") +AnnotationAssertion( "positive regulation of transcription from RNA polymerase II promoter, global") +AnnotationAssertion( "up regulation of global transcription from RNA polymerase II promoter") +AnnotationAssertion( "up-regulation of global transcription from RNA polymerase II promoter") +AnnotationAssertion( "upregulation of global transcription from RNA polymerase II promoter") +AnnotationAssertion( "GO:0045944") +AnnotationAssertion(rdfs:label "positive regulation of transcription by RNA polymerase II") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (negative regulation of translational initiation) AnnotationAssertion(Annotation( "GOC:go_curators") "Any process that stops, prevents, or reduces the frequency, rate or extent of translational initiation.") @@ -85939,9 +89239,11 @@ EquivalentClasses( ObjectIntersection # Class: (heterocycle metabolic process) AnnotationAssertion(Annotation( "ISBN:0198506732") "The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "heterocycle metabolism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0046483") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "heterocycle metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -86107,7 +89409,8 @@ EquivalentClasses( ObjectIntersection # Class: (sphingolipid transporter activity) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "ISBN:0198506732") "Enables the directed movement of sphingolipids into, out of or within a cell, or between cells. Sphingolipids are a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).") -AnnotationAssertion(Annotation(rdfs:label "SPNS2 transports S1P from cytosol to extracellular region") "Reactome:R-HSA-9695890") +AnnotationAssertion(Annotation(rdfs:label "SPNS2,MFSD2B transport S1P from cytosol to extracellular region") "Reactome:R-HSA-9695890") +AnnotationAssertion(Annotation(rdfs:label "ABCC1,ABCG2 transport C18-S1P to extracellular region") "Reactome:R-HSA-9843721") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0046624") AnnotationAssertion(rdfs:label "sphingolipid transporter activity") @@ -86604,6 +89907,8 @@ AnnotationAssertion( "GO:0046850") AnnotationAssertion(rdfs:label "regulation of bone remodeling") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectAllValuesFrom( )) # Class: (negative regulation of bone remodeling) @@ -87218,7 +90523,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0048241") AnnotationAssertion(rdfs:label "epinephrine transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (epinephrine secretion) @@ -87227,7 +90532,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0048242") AnnotationAssertion(rdfs:label "epinephrine secretion") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (norepinephrine secretion) @@ -87967,7 +91272,7 @@ SubClassOf( "GOC:jid") "Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0048583") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "regulation of response to stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -87983,7 +91288,7 @@ AnnotationAssertion( "stimulation of response to stimulus") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0048584") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "positive regulation of response to stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -87999,7 +91304,7 @@ AnnotationAssertion( "inhibition of response to stimulus") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0048585") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "negative regulation of response to stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -88112,13 +91417,15 @@ SubClassOf( ObjectSomeValuesFrom( (multicellular organismal reproductive process) AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:jid") Annotation( "GOC:tb") "The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27054"^^xsd:anyURI) AnnotationAssertion( "organismal reproductive process") AnnotationAssertion( "reproductive process in a multicellular organism") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0048609") +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "multicellular organismal reproductive process") SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) # Class: (embryonic hindgut morphogenesis) @@ -89202,6 +92509,7 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "anatomical structure development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -89287,6 +92595,7 @@ AnnotationAssertion( "GO:0048870") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell motility") @@ -90624,6 +93933,8 @@ SubClassOf( (positive regulation of T cell activation) AnnotationAssertion(Annotation( "GOC:ai") "Any process that activates or increases the frequency, rate or extent of T cell activation.") +AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "positive regulation of T lymphocyte activation") AnnotationAssertion( "positive regulation of T-cell activation") AnnotationAssertion( "positive regulation of T-lymphocyte activation") @@ -90639,6 +93950,12 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) SubClassOf( ) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (positive regulation of B cell activation) @@ -90723,6 +94040,7 @@ SubClassOf( (musculoskeletal movement) AnnotationAssertion(Annotation( "GOC:dph") "The movement of an organism or part of an organism using mechanoreceptors, the nervous system, striated muscle and/or the skeletal system.") +AnnotationAssertion( ) AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0050881") AnnotationAssertion(rdfs:label "musculoskeletal movement") @@ -90790,12 +94108,13 @@ AnnotationAssertion( "physiological response to stimulus") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0050896") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "response to stimulus") SubClassOf( ) @@ -91092,6 +94411,9 @@ SubClassOf( ObjectSomeValuesFrom( "PMID:16005275") Annotation( "Wikipedia:Animal_echolocation") "Echolocation is the method used by some animals (e.g. bats, dolphins and some whales) to determine the location of something by measuring the time it takes for an echo to return from it. These animals emit sound waves and listen for the echo, calculating the distance to the object from the time lapse between sound emission and the echo returning.") AnnotationAssertion(Annotation( "PMID:34140356") ) AnnotationAssertion(Annotation( "PMID:34140356") ) +AnnotationAssertion(Annotation( "PMID:34140356") ) +AnnotationAssertion(Annotation( "PMID:34140356") ) +AnnotationAssertion(Annotation( "PMID:34140356") ) AnnotationAssertion( "Wikipedia:Echolocation") AnnotationAssertion(Annotation( "https://en.wikipedia.org/wiki/Animal_echolocation") "biological sonar") AnnotationAssertion( "perception of environment using reflected sound waves") @@ -91620,6 +94942,44 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (regulation of DNA-binding transcription factor activity) + +AnnotationAssertion(Annotation( "GOC:ai") "Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.") +AnnotationAssertion( "GO:1904167") +AnnotationAssertion( "GO:2000823") +AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "regulation of transcription factor activity") +AnnotationAssertion( "regulation of DNA binding transcription factor activity") +AnnotationAssertion( "regulation of sequence-specific DNA binding transcription factor activity") +AnnotationAssertion( "regulation of androgen receptor activity") +AnnotationAssertion( "regulation of thyroid hormone receptor activity") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0051090") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "regulation of DNA-binding transcription factor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (positive regulation of DNA-binding transcription factor activity) + +AnnotationAssertion(Annotation( "GOC:ai") "Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription.") +AnnotationAssertion( "rph") +AnnotationAssertion( "2015-04-22T12:22:16Z") +AnnotationAssertion( "GO:1904169") +AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "positive regulation of transcription factor activity") +AnnotationAssertion( "positive regulation of DNA binding transcription factor activity") +AnnotationAssertion( "positive regulation of sequence-specific DNA binding transcription factor activity") +AnnotationAssertion( "up regulation of transcription factor activity") +AnnotationAssertion( "up-regulation of transcription factor activity") +AnnotationAssertion( "upregulation of transcription factor activity") +AnnotationAssertion( "activation of transcription factor activity") +AnnotationAssertion( "positive regulation of thyroid hormone receptor activity") +AnnotationAssertion( "stimulation of transcription factor activity") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0051091") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "positive regulation of DNA-binding transcription factor activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (negative regulation of developmental process) AnnotationAssertion(Annotation( "GOC:ai") "Any process that stops, prevents or reduces the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).") @@ -91996,6 +95356,7 @@ EquivalentClasses( ObjectIntersection # Class: (localization) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:dos") "Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27052"^^xsd:anyURI) AnnotationAssertion( "jl") AnnotationAssertion( "2013-12-18T13:51:04Z") AnnotationAssertion( "GO:1902578") @@ -92009,6 +95370,7 @@ AnnotationAssertion( "GOC:TermGenie") "single organism localization") AnnotationAssertion( "single-organism localization") AnnotationAssertion( "GO:0051179") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "localization") SubClassOf( ) @@ -92029,7 +95391,7 @@ AnnotationAssertion( "negative regulation of calcium ion (Ca2+) transport") AnnotationAssertion( "GO:0051208") AnnotationAssertion(rdfs:label "sequestering of calcium ion") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ObjectSomeValuesFrom( )) # Class: (release of sequestered calcium ion into cytosol) @@ -92561,7 +95923,6 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051338") AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead.") AnnotationAssertion(rdfs:label "regulation of transferase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -92607,7 +95968,6 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051347") AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead.") AnnotationAssertion(rdfs:label "positive regulation of transferase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -92623,7 +95983,6 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051348") AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead.") AnnotationAssertion(rdfs:label "negative regulation of transferase activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -92670,7 +96029,7 @@ AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0051379") AnnotationAssertion(rdfs:label "epinephrine binding") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (norepinephrine binding) @@ -93248,56 +96607,6 @@ AnnotationAssertion( "positive regulation of norepinephrine uptake") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (epinephrine uptake) - -AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of epinephrine into a cell, typically presynaptic neurons or glial cells. Epinephrine is a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine.") -AnnotationAssertion( "adrenaline reuptake") -AnnotationAssertion( "adrenaline uptake") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "epinephrine import") -AnnotationAssertion( "epinephrine reuptake") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0051625") -AnnotationAssertion(rdfs:label "epinephrine uptake") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (regulation of epinephrine uptake) - -AnnotationAssertion(Annotation( "GOC:ai") "Any process that modulates the frequency, rate or extent of the directed movement of the neurotransmitter epinephrine into a cell.") -AnnotationAssertion( "regulation of adrenaline uptake") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "regulation of epinephrine import") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0051626") -AnnotationAssertion(rdfs:label "regulation of epinephrine uptake") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (negative regulation of epinephrine uptake) - -AnnotationAssertion(Annotation( "GOC:ai") "Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of epinephrine into a cell.") -AnnotationAssertion( "down regulation of epinephrine uptake") -AnnotationAssertion( "down-regulation of epinephrine uptake") -AnnotationAssertion( "downregulation of epinephrine uptake") -AnnotationAssertion( "negative regulation of adrenaline uptake") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "negative regulation of epinephrine import") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0051627") -AnnotationAssertion(rdfs:label "negative regulation of epinephrine uptake") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (positive regulation of epinephrine uptake) - -AnnotationAssertion(Annotation( "GOC:ai") "Any process that activates or increases the frequency, rate or extent of the directed movement of epinephrine into a cell.") -AnnotationAssertion( "positive regulation of adrenaline uptake") -AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "positive regulation of epinephrine import") -AnnotationAssertion( "up regulation of epinephrine uptake") -AnnotationAssertion( "up-regulation of epinephrine uptake") -AnnotationAssertion( "upregulation of epinephrine uptake") -AnnotationAssertion( "activation of epinephrine uptake") -AnnotationAssertion( "stimulation of epinephrine uptake") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0051628") -AnnotationAssertion(rdfs:label "positive regulation of epinephrine uptake") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (acetylcholine uptake) AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of acetylcholine into a cell, typically presynaptic neurons or glial cells. Acetylcholine is a major neurotransmitter and neuromodulator both in the central and peripheral nervous systems. It also acts as a paracrine signal in various non-neural tissues.") @@ -93585,7 +96894,7 @@ SubClassOf( "GOC:bf") Annotation( "GOC:jl") "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0051716") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "cellular response to stimulus") SubClassOf( ) @@ -94488,6 +97797,23 @@ AnnotationAssertion( "negative regulation of cardiac muscle tissue development") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (D-glucose transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:jid") Annotation( "GOC:jsg") Annotation( "GOC:mah") "Enables the transfer of the D-enantiomer of the hexose monosaccharide glucose from one side of a membrane to the other.") +AnnotationAssertion(Annotation(rdfs:label "SLC2A6,8,10,12 transport Glc from extracellular region to cytosol") "Reactome:R-HSA-429094") +AnnotationAssertion(Annotation(rdfs:label "GLUT2 (SLC2A2) transports Glc from cytosol to extracellular region") "Reactome:R-HSA-450095") +AnnotationAssertion(Annotation(rdfs:label "GLUT1 (SLC2A1) tetramer transports Glc from extracellular region to cytosol") "Reactome:R-HSA-5339524") +AnnotationAssertion(Annotation(rdfs:label "SLC2A1 tetramer does not transport Glc from extracellular region to cytosol") "Reactome:R-HSA-5632804") +AnnotationAssertion(Annotation(rdfs:label "Defective SLC2A10 does not transport Glc from extracellular region to cytosol") "Reactome:R-HSA-5632871") +AnnotationAssertion(Annotation(rdfs:label "GLUT14 (SLC2A14) tetramer transports Glc from extracellular region to cytosol") "Reactome:R-HSA-8981553") +AnnotationAssertion(Annotation(rdfs:label "GLUT3 (SLC2A3) tetramer transports Glc from extracellular region to cytosol") "Reactome:R-HSA-8981564") +AnnotationAssertion(Annotation(rdfs:label "GLUT4 (SLC2A4) tetramer transports Glc from extracellular region to cytosol") "Reactome:R-HSA-8981570") +AnnotationAssertion(Annotation(rdfs:label "GLUT2 (SLC2A2) tetramer transports Glc from extracellular region to cytosol") "Reactome:R-HSA-8981574") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0055056") +AnnotationAssertion(rdfs:label "D-glucose transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (neuroblast division) AnnotationAssertion(Annotation( "PMID:11163136") Annotation( "PMID:11250167") "The process resulting in the physical partitioning and separation of a neuroblast into daughter cells. A neuroblast is any cell that will divide and give rise to a neuron.") @@ -94516,7 +97842,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0055062") AnnotationAssertion(rdfs:label "phosphate ion homeostasis") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (sulfate ion homeostasis) @@ -94578,6 +97904,7 @@ AnnotationAssertion( "GO:0055085") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -95110,7 +98437,7 @@ SubClassOf( "GOC:dos") Annotation( "GOC:pdt") "A compound molecular function in which an effector function is controlled by one or more regulatory components.") AnnotationAssertion( "molecular_function") AnnotationAssertion( "GO:0060089") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) @@ -101578,19 +104905,6 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (epinephrine secretion, neurotransmission) - -AnnotationAssertion(Annotation( "GOC:dph") "The regulated release of epinephrine by a cell in which the epinephrine acts as a neurotransmitter.") -AnnotationAssertion( "dph") -AnnotationAssertion( "2013-06-21T15:47:22Z") -AnnotationAssertion(Annotation( "GOC:dph") "adrenaline secretion, neurotransmission") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0061529") -AnnotationAssertion(rdfs:label "epinephrine secretion, neurotransmission") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ) - # Class: (norepinephrine secretion, neurotransmission) AnnotationAssertion(Annotation( "GOC:dph") "The regulated release of norepinephrine by a cell, in which the norepinephrine acts as a neurotransmitter.") @@ -103574,7 +106888,7 @@ AnnotationAssertion( "2009-08-27T04:41:45Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0070887") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "cellular response to chemical stimulus") SubClassOf( ) @@ -103699,7 +107013,7 @@ AnnotationAssertion( AnnotationAssertion(Annotation( "GOC:mah") "cellular response to abiotic stress") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0071214") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "cellular response to abiotic stimulus") SubClassOf( ) @@ -103714,7 +107028,7 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0071230") AnnotationAssertion(rdfs:label "cellular response to amino acid stimulus") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (cellular response to inorganic substance) @@ -103772,7 +107086,7 @@ AnnotationAssertion(Annotation( "biological_process") AnnotationAssertion( "GO:0071277") AnnotationAssertion(rdfs:label "cellular response to calcium ion") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (cellular response to iron ion) @@ -103879,7 +107193,7 @@ AnnotationAssertion( AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0071333") AnnotationAssertion(rdfs:label "cellular response to glucose stimulus") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (cellular response to cytokine stimulus) @@ -104071,7 +107385,7 @@ AnnotationAssertion( "2009-12-18T02:25:40Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0071495") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "cellular response to endogenous stimulus") SubClassOf( ) @@ -104415,6 +107729,7 @@ AnnotationAssertion( "2010-03-08T03:56:28Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0071705") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nitrogen compound transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -104709,31 +108024,6 @@ AnnotationAssertion( "cellular response to catecholamine stimulus") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (response to epinephrine) - -AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:mah") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an epinephrine stimulus. Epinephrine is a catecholamine that has the formula C9H13NO3; it is secreted by the adrenal medulla to act as a hormone, and released by certain neurons to act as a neurotransmitter active in the central nervous system.") -AnnotationAssertion( "mah") -AnnotationAssertion( "2010-09-13T03:27:48Z") -AnnotationAssertion(Annotation( "GOC:mah") "response to adrenaline stimulus") -AnnotationAssertion(Annotation( "GOC:dos") "response to epinephrine stimulus") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0071871") -AnnotationAssertion(rdfs:comment "Note that epinephrine and norepinephrine are ligands for the same receptors, and there are multiple adrenergic receptors.") -AnnotationAssertion(rdfs:label "response to epinephrine") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - -# Class: (cellular response to epinephrine stimulus) - -AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:mah") "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an epinephrine stimulus. Epinephrine is a catecholamine that has the formula C9H13NO3; it is secreted by the adrenal medulla to act as a hormone, and released by certain neurons to act as a neurotransmitter active in the central nervous system.") -AnnotationAssertion( "mah") -AnnotationAssertion( "2010-09-13T03:31:40Z") -AnnotationAssertion(Annotation( "GOC:mah") "cellular response to adrenaline stimulus") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0071872") -AnnotationAssertion(rdfs:comment "Note that epinephrine and norepinephrine are ligands for the same receptors, and there are multiple adrenergic receptors.") -AnnotationAssertion(rdfs:label "cellular response to epinephrine stimulus") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) - # Class: (response to norepinephrine) AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:mah") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a norepinephrine stimulus. Norepinephrine is a catecholamine that has the formula C8H11NO3; it acts as a hormone, and as a neurotransmitter in most of the sympathetic nervous system.") @@ -107493,6 +110783,7 @@ AnnotationAssertion( AnnotationAssertion( "amino acid derivative transport") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0072337") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "modified amino acid transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -107921,7 +111212,7 @@ AnnotationAssertion( "2009-05-06T04:51:28Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0080134") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "regulation of response to stress") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -107937,7 +111228,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0080144") AnnotationAssertion(rdfs:label "intracellular amino acid homeostasis") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (regulation of fertilization) @@ -108221,7 +111512,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0089718") AnnotationAssertion(rdfs:label "amino acid import across plasma membrane") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (hypoblast development) @@ -108964,10 +112255,13 @@ SubClassOf( "GOC:dph") Annotation( "GOC:tb") "Any cellular metabolic process involving nucleic acids.") AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26133"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27052"^^xsd:anyURI) AnnotationAssertion( "tb") AnnotationAssertion( "2010-04-07T10:18:47Z") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0090304") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.") AnnotationAssertion(rdfs:label "nucleic acid metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -109389,7 +112683,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0097054") AnnotationAssertion(rdfs:label "L-glutamate biosynthetic process") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (synaptic membrane) @@ -110383,7 +113677,7 @@ AnnotationAssertion( AnnotationAssertion( "region of plasma membrane") AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0098590") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass.") AnnotationAssertion(rdfs:label "plasma membrane region") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -110698,7 +113992,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0098708") AnnotationAssertion(rdfs:label "glucose import across plasma membrane") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (iron ion import across plasma membrane) @@ -110816,9 +114110,11 @@ SubClassOf( ObjectSomeValuesFrom( "GOC:dos") "Any process that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0098754") +AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "detoxification") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -110901,7 +114197,7 @@ SubClassOf( "GOC:dos") "Any protein complex that is part of the plasma membrane and which functions as a signaling receptor.") AnnotationAssertion( "cellular_component") AnnotationAssertion( "GO:0098802") -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.") AnnotationAssertion(rdfs:label "plasma membrane signaling receptor complex") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) @@ -111436,7 +114732,7 @@ AnnotationAssertion( "GO:0099082") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "retrograde trans-synaptic signaling by neuropeptide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission) @@ -111446,7 +114742,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.") AnnotationAssertion(rdfs:label "retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (microtubule polymerization based movement) @@ -111898,7 +115194,7 @@ AnnotationAssertion( "GO:0099538") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "synaptic signaling via neuropeptide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (trans-synaptic signaling by neuropeptide) @@ -111907,7 +115203,7 @@ AnnotationAssertion( "GO:0099540") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "trans-synaptic signaling by neuropeptide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (trans-synaptic signaling by lipid) @@ -111960,7 +115256,7 @@ AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.") AnnotationAssertion(rdfs:label "trans-synaptic signaling by neuropeptide, modulating synaptic transmission") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (trans-synaptic signaling by lipid, modulating synaptic transmission) @@ -112477,6 +115773,7 @@ AnnotationAssertion(Annotation( "kmv") AnnotationAssertion( "2018-01-29T14:46:52Z") AnnotationAssertion( "biological_process") +AnnotationAssertion( "endosomal trafficking") AnnotationAssertion( "GO:0110077") AnnotationAssertion(rdfs:label "vesicle-mediated intercellular transport") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -112802,6 +116099,20 @@ AnnotationAssertion( "plasma membrane bounded cell projection") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (proton export across plasma membrane) + +AnnotationAssertion(Annotation( "GOC:mah") Annotation( "PMID:9762918") "The directed movement of hydrogen ions (protons) from inside a cell, across the plasma membrane and into the extracellular region.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/13271"^^xsd:anyURI) +AnnotationAssertion( "krc") +AnnotationAssertion( "2017-03-31T17:39:03Z") +AnnotationAssertion( "hydrogen ion export from cell") +AnnotationAssertion( "proton export from cell") +AnnotationAssertion( "hydrogen ion export across plasma membrane") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0120029") +AnnotationAssertion(rdfs:label "proton export across plasma membrane") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (plasma membrane bounded cell projection assembly) AnnotationAssertion(Annotation( "GOC:krc") "Formation of a prolongation or process extending and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon.") @@ -113410,6 +116721,26 @@ AnnotationAssertion( "catalytic activity, acting on a glycoprotein") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (transcription regulator activity) + +AnnotationAssertion(Annotation( "GOC:pg") Annotation( "GOC:txnOH-2018") Annotation( "Wikipedia:Transcription_factor") "A molecular function that controls the rate, timing and/or magnitude of gene transcription. The function of transcriptional regulators is to modulate gene expression at the transcription step so that they are expressed in the right cell at the right time and in the right amount throughout the life of the cell and the organism. Genes are transcriptional units, and include bacterial operons.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/13588"^^xsd:anyURI) +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/23609"^^xsd:anyURI) +AnnotationAssertion( "pg") +AnnotationAssertion( "2017-10-18T07:05:44Z") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0140110") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transcription regulator activity") +SubClassOf( ) + # Class: (extracellular vesicle biogenesis) AnnotationAssertion(Annotation( "PMID:28736435") "The assembly and secretion a set of components to form an extracellular vesicule, a membrane-bounded vesicle that is released into the extracellular region. Extracellular vesicles include exosomes, microvesicles and apoptotic bodies, based on the mechanism by which they are released from cells and differentiated based on their size and content.") @@ -113725,6 +117056,7 @@ AnnotationAssertion(Annotation( "https://github.com/geneontology/go-ontology/issues/17073"^^xsd:anyURI) AnnotationAssertion( "pg") AnnotationAssertion( "2019-04-01T10:41:38Z") +AnnotationAssertion(Annotation(rdfs:label "M6PR transports activated ARSA to the lysosome") "Reactome:R-HSA-2248891") AnnotationAssertion(Annotation(rdfs:label "iRHOM2 transports ADAM17 from ER to the Golgi-network") "Reactome:R-HSA-9662747") AnnotationAssertion(Annotation(rdfs:label "iRHOM2 transports ADAM17:Zn2+ from Golgi to the plasma membrane") "Reactome:R-HSA-9662818") AnnotationAssertion( "molecular_function") @@ -113936,18 +117268,31 @@ AnnotationAssertion( "intracellular nucleoside homeostasis") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (intracellular nitrogen homeostasis) - -AnnotationAssertion(Annotation( "GOC:tb") "A homeostatic process involved in the maintenance of a steady state level of nitrogen within a cell.") -AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/25558"^^xsd:anyURI) -AnnotationAssertion( "pg") -AnnotationAssertion( "2023-06-15T08:56:16Z") -AnnotationAssertion( "cellular nitrogen homeostasis") -AnnotationAssertion( "nitrogen homeostasis") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:0141067") -AnnotationAssertion(rdfs:label "intracellular nitrogen homeostasis") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (nucleic acid biosynthetic process) + +AnnotationAssertion(Annotation( "GOC:dph") Annotation( "GOC:tb") "The biosynthetic process resulting in the formation of a nucleic acid.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27408"^^xsd:anyURI) +AnnotationAssertion( "pg") +AnnotationAssertion( "2024-03-25T07:33:40Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0141187") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.") +AnnotationAssertion(rdfs:label "nucleic acid biosynthetic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (nucleic acid catabolic process) + +AnnotationAssertion(Annotation( "GOC:curators") "The cellular DNA metabolic process resulting in the breakdown of a nucleic acid.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27408"^^xsd:anyURI) +AnnotationAssertion( "pg") +AnnotationAssertion( "2024-03-25T07:35:06Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0141188") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.") +AnnotationAssertion(rdfs:label "nucleic acid catabolic process") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (regulation of protein localization to lysosome) @@ -114301,7 +117646,18 @@ AnnotationAssertion( AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:0160095") AnnotationAssertion(rdfs:label "insect pharynx development") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (histamine transmembrane transporter activity) + +AnnotationAssertion(Annotation( "PMID:36288320") "Enables the transfer of histamine from one side of a membrane to the other.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27277"^^xsd:anyURI) +AnnotationAssertion( "rynl") +AnnotationAssertion( "2024-03-15T16:40:36Z") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0160173") +AnnotationAssertion(rdfs:label "histamine transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (L-amino acid metabolic process) @@ -114432,6 +117788,18 @@ AnnotationAssertion( "non-proteinogenic amino acid catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (lipid transmembrane transporter activity) + +AnnotationAssertion(Annotation( "GOC:curators") "Enables the transfer of a lipid from one side of a membrane to the other.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/27252"^^xsd:anyURI) +AnnotationAssertion( "ew") +AnnotationAssertion( "2024-03-15T18:47:58Z") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:0170055") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lipid transmembrane transporter activity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (positive regulation of dendrite development) AnnotationAssertion(Annotation( "GOC:TermGenie") "Any process that activates or increases the frequency, rate or extent of dendrite development.") @@ -117770,6 +121138,7 @@ SubClassOf( (organonitrogen compound catabolic process) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "The chemical reactions and pathways resulting in the breakdown of organonitrogen compound.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "pr") AnnotationAssertion( "2012-11-04T15:17:56Z") AnnotationAssertion(Annotation( "GOC:TermGenie") "organonitrogen compound breakdown") @@ -117777,12 +121146,14 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "organonitrogen compound degradation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1901565") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organonitrogen compound catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (organonitrogen compound biosynthetic process) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "The chemical reactions and pathways resulting in the formation of organonitrogen compound.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "pr") AnnotationAssertion( "2012-11-04T15:18:00Z") AnnotationAssertion(Annotation( "GOC:TermGenie") "organonitrogen compound anabolism") @@ -117791,6 +121162,7 @@ AnnotationAssertion(Annotation( "GOC:TermGenie") "organonitrogen compound synthesis") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1901566") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organonitrogen compound biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -117799,17 +121171,16 @@ SubClassOf( (organic substance catabolic process) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "The chemical reactions and pathways resulting in the breakdown of an organic substance, any molecular entity containing carbon.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "pr") AnnotationAssertion( "2012-11-05T11:04:36Z") -AnnotationAssertion(Annotation( "GOC:TermGenie") "organic molecular entity breakdown") AnnotationAssertion( "organic molecular entity catabolic process") -AnnotationAssertion(Annotation( "GOC:TermGenie") "organic molecular entity catabolism") -AnnotationAssertion(Annotation( "GOC:TermGenie") "organic molecular entity degradation") AnnotationAssertion( "organic substance breakdown") AnnotationAssertion( "organic substance catabolism") AnnotationAssertion( "organic substance degradation") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1901575") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organic substance catabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -117818,6 +121189,7 @@ SubClassOf( (organic substance biosynthetic process) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") "The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/26424"^^xsd:anyURI) AnnotationAssertion( "pr") AnnotationAssertion( "2012-11-05T11:04:40Z") AnnotationAssertion(Annotation( "GOC:TermGenie") "organic molecular entity anabolism") @@ -117831,6 +121203,7 @@ AnnotationAssertion( "organic substance synthesis") AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1901576") +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organic substance biosynthetic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -118221,7 +121594,7 @@ AnnotationAssertion( AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1901652") AnnotationAssertion(rdfs:label "response to peptide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (cellular response to peptide) @@ -118231,7 +121604,7 @@ AnnotationAssertion( AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1901653") AnnotationAssertion(rdfs:label "cellular response to peptide") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (response to ketone) @@ -118328,6 +121701,17 @@ AnnotationAssertion( "sulfur compound transmembrane transporter activity") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (proton binding) + +AnnotationAssertion(Annotation( "GOC:TermGenie") "Binding to proton.") +AnnotationAssertion( "al") +AnnotationAssertion( "2012-12-07T13:50:53Z") +AnnotationAssertion(Annotation( "GOC:bm") "hydrogen ion binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:1901691") +AnnotationAssertion(rdfs:label "proton binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of compound eye retinal cell apoptotic process) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:mtg_apoptosis") Annotation( "PMID:12021768") "Any process that modulates the frequency, rate or extent of compound eye retinal cell apoptotic process.") @@ -119023,6 +122407,7 @@ EquivalentClasses( ObjectIntersection # Class: (regulation of cilium assembly) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:cilia") Annotation( "GOC:dph") Annotation( "PMID:17719545") "Any process that modulates the frequency, rate or extent of cilium assembly.") +AnnotationAssertion( ) AnnotationAssertion( "dph") AnnotationAssertion( "2013-03-26T18:10:51Z") AnnotationAssertion(Annotation( "GOC:TermGenie") "regulation of ciliogenesis") @@ -119031,6 +122416,9 @@ AnnotationAssertion(Annotation( "GO:1902017") AnnotationAssertion(rdfs:label "regulation of cilium assembly") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (negative regulation of cilium assembly) @@ -120420,6 +123808,27 @@ EquivalentClasses( ObjectIntersection SubClassOf( ) SubClassOf( ) +# Class: (proton transmembrane transport) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:pr") Annotation( "GO_REF:0000069") "The directed movement of a proton across a membrane.") +AnnotationAssertion( "pr") +AnnotationAssertion( "2013-12-20T11:08:37Z") +AnnotationAssertion( "GO:0006818") +AnnotationAssertion( "GO:0015991") +AnnotationAssertion( "GO:0015992") +AnnotationAssertion( "hydrogen transport") +AnnotationAssertion( "proton transport") +AnnotationAssertion( "hydrogen ion transmembrane transport") +AnnotationAssertion( "hydrogen transmembrane transport") +AnnotationAssertion( "ATP hydrolysis coupled proton transport") +AnnotationAssertion( "passive proton transport, down the electrochemical gradient") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "hydrogen ion transport") +AnnotationAssertion( "GO:1902600") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "proton transmembrane transport") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) + # Class: (regulation of neutrophil migration) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GO_REF:0000058") Annotation( "PMID:1826836") "Any process that modulates the frequency, rate or extent of neutrophil migration.") @@ -120631,36 +124040,6 @@ AnnotationAssertion( "regulation of neuroblast proliferation") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -# Class: (pentose catabolic process to butyrate) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:mengo_curators") Annotation( "GO_REF:0000093") Annotation( "PMID:18727018") Annotation( "PMID:19539744") "The chemical reactions and pathways resulting in the breakdown of pentose to butyrate.") -AnnotationAssertion( "tb") -AnnotationAssertion( "2014-02-19T18:28:28Z") -AnnotationAssertion( "GO:1990288") -AnnotationAssertion(Annotation( "GOC:tt") "acidogenesis") -AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose breakdown to butyrate") -AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose catabolism to butyrate") -AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose degradation to butyrate") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1902698") -AnnotationAssertion(rdfs:label "pentose catabolic process to butyrate") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - -# Class: (pentose catabolic process to acetate) - -AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:mengo_curators") Annotation( "GO_REF:0000093") Annotation( "PMID:18727018") Annotation( "PMID:19539744") "The chemical reactions and pathways resulting in the breakdown of pentose to acetate.") -AnnotationAssertion( "tb") -AnnotationAssertion( "2014-02-19T18:28:38Z") -AnnotationAssertion( "GO:1990289") -AnnotationAssertion(Annotation( "GOC:tt") "acidogenesis") -AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose breakdown to acetate") -AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose catabolism to acetate") -AnnotationAssertion(Annotation( "GOC:TermGenie") "pentose degradation to acetate") -AnnotationAssertion( "biological_process") -AnnotationAssertion( "GO:1902699") -AnnotationAssertion(rdfs:label "pentose catabolic process to acetate") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) - # Class: (GABA receptor complex) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:bhm") Annotation( "GO_REF:0000088") Annotation( "PMID:18790874") "A protein complex which is capable of GABA receptor activity. Upon binding of gamma-aminobutyric acid (GABA) it transmits the signal from one side of the membrane to the other to initiate a change in cell activity. Major inhibitory receptor in vertebrate brain. Also found in other vertebrate tissues, invertebrates and possibly in plants. Effective benzodiazepine receptor.") @@ -121804,6 +125183,32 @@ AnnotationAssertion(rdfs:comment "hu AnnotationAssertion(rdfs:label "positive regulation of glycoprotein metabolic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (regulation of RNA polymerase II regulatory region sequence-specific DNA binding) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:dph") Annotation( "GOC:krc") Annotation( "GO_REF:0000059") Annotation( "PMID:20026326") "Any process that modulates the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding.") +AnnotationAssertion( "dph") +AnnotationAssertion( "2014-05-15T17:55:54Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1903025") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "regulation of RNA polymerase II regulatory region sequence-specific DNA binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding) + +AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:dph") Annotation( "GOC:krc") Annotation( "GO_REF:0000059") Annotation( "PMID:20026326") "Any process that stops, prevents or reduces the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding.") +AnnotationAssertion( "dph") +AnnotationAssertion( "2014-05-15T17:56:00Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down regulation of RNA polymerase II regulatory region sequence-specific DNA binding") +AnnotationAssertion(Annotation( "GOC:TermGenie") "down-regulation of RNA polymerase II regulatory region sequence-specific DNA binding") +AnnotationAssertion(Annotation( "GOC:TermGenie") "downregulation of RNA polymerase II regulatory region sequence-specific DNA binding") +AnnotationAssertion(Annotation( "GOC:TermGenie") "inhibition of RNA polymerase II regulatory region sequence-specific DNA binding") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1903026") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of response to wounding) AnnotationAssertion(Annotation( "GOC:TermGenie") Annotation( "GOC:kmv") Annotation( "GO_REF:0000058") Annotation( "PMID:19164535") "Any process that modulates the frequency, rate or extent of response to wounding.") @@ -126911,7 +130316,7 @@ AnnotationAssertion( "glucose transport") AnnotationAssertion( "GO:1904659") AnnotationAssertion(rdfs:label "glucose transmembrane transport") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (negative regulation of cell differentiation involved in stem cell population maintenance) @@ -127032,7 +130437,7 @@ AnnotationAssertion( "peptide uptake permease activity") AnnotationAssertion( "GO:1904680") AnnotationAssertion(rdfs:label "peptide transmembrane transporter activity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (regulation of cytoplasmic translational initiation) @@ -128624,7 +132029,7 @@ AnnotationAssertion( "biological_process") AnnotationAssertion( "GO:1905011") AnnotationAssertion(rdfs:label "transmembrane phosphate ion transport from cytosol to vacuole") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (regulation of membrane lipid metabolic process) @@ -130947,6 +134352,21 @@ AnnotationAssertion( "regulation of protein localization to chromatin") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding) + +AnnotationAssertion(Annotation( "GOC:PARL") Annotation( "GOC:TermGenie") Annotation( "GOC:bc") Annotation( "GO_REF:0000059") Annotation( "PMID:23675531") "Any process that activates or increases the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding.") +AnnotationAssertion( "bc") +AnnotationAssertion( "2016-11-03T12:03:07Z") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up regulation of RNA polymerase II regulatory region sequence-specific DNA binding") +AnnotationAssertion(Annotation( "GOC:TermGenie") "up-regulation of RNA polymerase II regulatory region sequence-specific DNA binding") +AnnotationAssertion(Annotation( "GOC:TermGenie") "upregulation of RNA polymerase II regulatory region sequence-specific DNA binding") +AnnotationAssertion(Annotation( "GOC:TermGenie") "activation of RNA polymerase II regulatory region sequence-specific DNA binding") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1905636") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of artery morphogenesis) AnnotationAssertion(Annotation( "GOC:BHF") Annotation( "GOC:BHF_miRNA") Annotation( "GOC:TermGenie") Annotation( "GOC:rph") Annotation( "GO_REF:0000058") Annotation( "PMID:27389411") "Any process that modulates the frequency, rate or extent of artery morphogenesis.") @@ -132454,6 +135874,29 @@ AnnotationAssertion(rdfs:label "prot EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (response to dsDNA) + +AnnotationAssertion(Annotation( "PMID:10051633") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus.") +AnnotationAssertion( "sl") +AnnotationAssertion( "2015-06-24T17:54:13Z") +AnnotationAssertion( "response to double-stranded DNA") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1990784") +AnnotationAssertion(rdfs:label "response to dsDNA") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + +# Class: (cellular response to dsDNA) + +AnnotationAssertion(Annotation( "PMID:10051633") "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus.") +AnnotationAssertion( "sl") +AnnotationAssertion( "2015-06-24T22:48:25Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:1990786") +AnnotationAssertion(rdfs:label "cellular response to dsDNA") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) + # Class: (dorsal root ganglion development) AnnotationAssertion(Annotation( "PMID:18583150") "The process whose specific outcome is the progression of a dorsal root ganglion over time, from its formation to the mature structure.") @@ -132466,6 +135909,18 @@ AnnotationAssertion(rdfs:label "dors EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (sequence-specific double-stranded DNA binding) + +AnnotationAssertion(Annotation( "GOC:dos") Annotation( "GOC:sl") "Binding to double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding.") +AnnotationAssertion( "sl") +AnnotationAssertion( "2015-08-25T17:30:06Z") +AnnotationAssertion( "sequence-specific dsDNA binding") +AnnotationAssertion( "molecular_function") +AnnotationAssertion( "GO:1990837") +AnnotationAssertion(rdfs:label "sequence-specific double-stranded DNA binding") +SubClassOf( ) +SubClassOf( ) + # Class: (adaptive thermogenesis) AnnotationAssertion(Annotation( "PMID:17260010") Annotation( "PMID:20363363") "The regulated production of heat in response to short term environmental changes, such as stress, diet or reduced temperature.") @@ -132683,6 +136138,7 @@ SubClassOf( (regulation of stem cell population maintenance) AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of stem cell population maintenance.") +AnnotationAssertion( ) AnnotationAssertion( "tb") AnnotationAssertion( "2010-08-05T11:35:25Z") AnnotationAssertion( "biological_process") @@ -132690,6 +136146,9 @@ AnnotationAssertion(Annotation( "GO:2000036") AnnotationAssertion(rdfs:label "regulation of stem cell population maintenance") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ObjectComplementOf(ObjectSomeValuesFrom( ))) +SubClassOf( ObjectSomeValuesFrom( ObjectComplementOf())) +DisjointClasses( ObjectSomeValuesFrom( )) # Class: (regulation of ureter smooth muscle cell differentiation) @@ -134788,6 +138247,39 @@ AnnotationAssertion( "positive regulation of type B pancreatic cell apoptotic process") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (regulation of transcription regulatory region DNA binding) + +AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of transcription regulatory region DNA binding.") +AnnotationAssertion( "yaf") +AnnotationAssertion( "2011-05-09T03:28:11Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:2000677") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "regulation of transcription regulatory region DNA binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (negative regulation of transcription regulatory region DNA binding) + +AnnotationAssertion(Annotation( "GOC:obol") "Any process that stops, prevents or reduces the frequency, rate or extent of transcription regulatory region DNA binding.") +AnnotationAssertion( "yaf") +AnnotationAssertion( "2011-05-09T03:28:14Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:2000678") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "negative regulation of transcription regulatory region DNA binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + +# Class: (positive regulation of transcription regulatory region DNA binding) + +AnnotationAssertion(Annotation( "GOC:obol") "Any process that activates or increases the frequency, rate or extent of transcription regulatory region DNA binding.") +AnnotationAssertion( "yaf") +AnnotationAssertion( "2011-05-09T03:28:17Z") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:2000679") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "positive regulation of transcription regulatory region DNA binding") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (regulation of cardiac muscle cell myoblast differentiation) AnnotationAssertion(Annotation( "GOC:obol") "Any process that modulates the frequency, rate or extent of cardiac muscle cell myoblast differentiation.") @@ -136580,7 +140072,7 @@ SubClassOf( "GC_ID:1") AnnotationAssertion(Annotation( ) "Mus") -AnnotationAssertion(Annotation( ) "mice") +AnnotationAssertion(Annotation( ) "mice") AnnotationAssertion(Annotation( ) "mouse") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:10088") diff --git a/src/ontology/imports/orcidio_import.owl b/src/ontology/imports/orcidio_import.owl new file mode 100644 index 0000000000..f81e753777 --- /dev/null +++ b/src/ontology/imports/orcidio_import.owl @@ -0,0 +1,367 @@ +Prefix(:=) +Prefix(owl:=) +Prefix(rdf:=) +Prefix(xml:=) +Prefix(xsd:=) +Prefix(rdfs:=) + + +Ontology( + +Annotation(owl:versionInfo "2024-04-18") + +Declaration(Class()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(NamedIndividual()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) + + + +############################ +# Named Individuals +############################ + +# Individual: (Nicole Vasilevsky) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Nicole Vasilevsky") +ClassAssertion( ) + +# Individual: (Nizar Ibrahim) + +AnnotationAssertion(Annotation( ) "German-Moroccan paleontologist and anatomist") +AnnotationAssertion(Annotation( ) rdfs:label "Nizar Ibrahim") +ClassAssertion( ) + +# Individual: (Mark Engelstad) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Mark Engelstad") +ClassAssertion( ) + +# Individual: (Aleix Puig-Barbé) + +AnnotationAssertion(Annotation( ) "Researcher ORCID=0000-0001-6677-8489") +AnnotationAssertion(Annotation( ) rdfs:label "Aleix Puig-Barbé") +ClassAssertion( ) + +# Individual: (Shawn Zheng Kai Tan) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Shawn Zheng Kai Tan") +ClassAssertion( ) + +# Individual: (David P Hill) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "David P Hill") +ClassAssertion( ) + +# Individual: (Ellen Quardokus) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Ellen Quardokus") +ClassAssertion( ) + +# Individual: (Sarah Whitcher Kansa) + +AnnotationAssertion(Annotation( ) "researcher ORCID ID = 0000-0001-7920-5321") +AnnotationAssertion(Annotation( ) rdfs:label "Sarah Whitcher Kansa") +ClassAssertion( ) + +# Individual: (T Alexander Dececchi) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "T Alexander Dececchi") +ClassAssertion( ) + +# Individual: (Raymund Stefancsik) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Raymund Stefancsik") +ClassAssertion( ) + +# Individual: (Helena Machado) + +AnnotationAssertion(Annotation( ) "Researcher ORCID=0000-0001-8415-4848") +AnnotationAssertion(Annotation( ) rdfs:label "Helena Machado") +ClassAssertion( ) + +# Individual: (Hilmar Lapp) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Hilmar Lapp") +ClassAssertion( ) + +# Individual: (Melissa Haendel) + +AnnotationAssertion(Annotation( ) "American epidemiologist and ontologist") +AnnotationAssertion(Annotation( ) rdfs:label "Melissa Haendel") +ClassAssertion( ) + +# Individual: (Bonita R Lam) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Bonita R Lam") +ClassAssertion( ) + +# Individual: (Alexander D Diehl) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Alexander D Diehl") +ClassAssertion( ) + +# Individual: (Paula Duek Roggli) + +AnnotationAssertion(Annotation( ) "researcher (ORCID 0000-0002-0819-0473)") +AnnotationAssertion(Annotation( ) rdfs:label "Paula Duek Roggli") +ClassAssertion( ) + +# Individual: (Terry Hayamizu) + +AnnotationAssertion(Annotation( ) "Researcher ORCID = 0000-0002-0956-8634") +AnnotationAssertion(Annotation( ) rdfs:label "Terry Hayamizu") +ClassAssertion( ) + +# Individual: (Stephen D Van Hooser) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Stephen D Van Hooser") +ClassAssertion( ) + +# Individual: (Robert Druzinsky) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Robert Druzinsky") +ClassAssertion( ) + +# Individual: (Alan Ruttenberg) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Alan Ruttenberg") +ClassAssertion( ) + +# Individual: (James Malone) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "James Malone") +ClassAssertion( ) + +# Individual: (David C. Blackburn) + +AnnotationAssertion(Annotation( ) "herpetologist") +AnnotationAssertion(Annotation( ) rdfs:label "David C. Blackburn") +ClassAssertion( ) + +# Individual: (Georgios V. Gkoutos) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Georgios V. Gkoutos") +ClassAssertion( ) + +# Individual: (Ceri E Van Slyke) + +AnnotationAssertion(Annotation( ) "researcher, ORCID id # 0000-0002-2244-7917") +AnnotationAssertion(Annotation( ) rdfs:label "Ceri E Van Slyke") +ClassAssertion( ) + +# Individual: (Paola Roncaglia) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Paola Roncaglia") +ClassAssertion( ) + +# Individual: (Anne Thessen) + +AnnotationAssertion(Annotation( ) "data scientist") +AnnotationAssertion(Annotation( ) rdfs:label "Anne Thessen") +ClassAssertion( ) + +# Individual: (Carlo Tornial) + +AnnotationAssertion(Annotation( ) "Researcher ORCID = 0000-0002-3734-1859") +AnnotationAssertion(Annotation( ) rdfs:label "Carlo Tornial") +ClassAssertion( ) + +# Individual: (Paul N. Schofield) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Paul N. Schofield") +ClassAssertion( ) + +# Individual: (Laura M Jackson) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Laura M Jackson") +ClassAssertion( ) + +# Individual: (Danielle Scafidi) + +AnnotationAssertion(Annotation( ) "Researcher ORCID=0000-0002-5480-427X") +AnnotationAssertion(Annotation( ) rdfs:label "Danielle Scafidi") +ClassAssertion( ) + +# Individual: (Damien Goutte-Gattat) + +AnnotationAssertion(Annotation( ) "researcher ORCID ID = 0000-0002-6095-8718") +AnnotationAssertion(Annotation( ) rdfs:label "Damien Goutte-Gattat") +ClassAssertion( ) + +# Individual: (Jennifer R. Smith) + +AnnotationAssertion(Annotation( ) "Researcher ORCID = 0000-0002-6443-9376") +AnnotationAssertion(Annotation( ) rdfs:label "Jennifer R. Smith") +ClassAssertion( ) + +# Individual: (Anna V. Anagnostopoulos) + +AnnotationAssertion(Annotation( ) "Researcher ORCID = 0000-0002-6490-7723") +AnnotationAssertion(Annotation( ) rdfs:label "Anna V. Anagnostopoulos") +ClassAssertion( ) + +# Individual: (Christopher J. Mungall) + +AnnotationAssertion(Annotation( ) "bioinformatics researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Christopher J. Mungall") +ClassAssertion( ) + +# Individual: (David Osumi-Sutherland) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "David Osumi-Sutherland") +ClassAssertion( ) + +# Individual: (Maryann E. Martone) + +AnnotationAssertion(Annotation( ) "San Diego researcher with interests in neuroinformatics") +AnnotationAssertion(Annotation( ) rdfs:label "Maryann E. Martone") +ClassAssertion( ) + +# Individual: (James P. Balhoff) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "James P. Balhoff") +ClassAssertion( ) + +# Individual: (Gloria S Pryhuber) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Gloria S Pryhuber") +ClassAssertion( ) + +# Individual: (Frederic B Bastian) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Frederic B Bastian") +ClassAssertion( ) + +# Individual: (Erik Segerdell) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Erik Segerdell") +ClassAssertion( ) + +# Individual: (Yvonne Bradford) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Yvonne Bradford") +ClassAssertion( ) + +# Individual: (Terrence F Meehan) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Terrence F Meehan") +ClassAssertion( ) + +# Individual: (Maria C Keays) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Maria C Keays") +ClassAssertion( ) + +# Individual: (Shahim Essaid) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Shahim Essaid") +ClassAssertion( ) + +# Individual: (Meghan Balk) + +AnnotationAssertion(Annotation( ) "ecologist") +AnnotationAssertion(Annotation( ) rdfs:label "Meghan Balk") +ClassAssertion( ) + +# Individual: (Sanjay Jain) + +AnnotationAssertion(Annotation( ) "researcher (ORCID 0000-0003-2804-127X)") +AnnotationAssertion(Annotation( ) rdfs:label "Sanjay Jain") +ClassAssertion( ) + +# Individual: (Wasila M Dahdul) + +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Wasila M Dahdul") +ClassAssertion( ) + +# Individual: (Cynthia L Smith) + +AnnotationAssertion(Annotation( ) "researcher on mouse genome informatics") +AnnotationAssertion(Annotation( ) rdfs:label "Cynthia L Smith") +ClassAssertion( ) + +# Individual: (Charles Tapley Hoyt) + +AnnotationAssertion(Annotation( ) "American chemist") +AnnotationAssertion(Annotation( ) rdfs:label "Charles Tapley Hoyt") +ClassAssertion( ) + + +) \ No newline at end of file diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 599c78aecd..c3d358eccf 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -63,6 +63,7 @@ import: http://purl.obolibrary.org/obo/uberon/components/in-subset.owl import: http://purl.obolibrary.org/obo/uberon/components/mappings.owl import: http://purl.obolibrary.org/obo/uberon/components/vasculature_class.owl import: http://purl.obolibrary.org/obo/uberon/imports/merged_import.owl +import: http://purl.obolibrary.org/obo/uberon/imports/orcidio_import.owl import: http://purl.obolibrary.org/obo/uberon/patterns/definitions.owl ontology: uberon/core property_value: dc-contributor https://github.com/orgs/pato-ontology/teams/pato-community diff --git a/src/ontology/uberon-odk.yaml b/src/ontology/uberon-odk.yaml index 66f6c3e393..2ca0a62e13 100644 --- a/src/ontology/uberon-odk.yaml +++ b/src/ontology/uberon-odk.yaml @@ -73,6 +73,7 @@ import_group: mirror_from: https://w3id.org/orcidio/orcidio.owl base_iris: - https://orcid.org/ + module_type: custom - id: omo module_type: mirror subset_group: diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile index 220b35dcc9..6325a805de 100644 --- a/src/ontology/uberon.Makefile +++ b/src/ontology/uberon.Makefile @@ -437,6 +437,20 @@ all_local_imports: endif +# ---------------------------------------- +# EXTRACT ORCIDs INDIVIDUALS +# ---------------------------------------- + +# Extract ORCID from dcterms:contributor annotations +$(IMPORTDIR)/orcidio_terms_combined.txt: $(SRC) + $(ROBOT) query -f csv -i $< --query ../sparql/orcids.sparql $@.tmp &&\ + cat $@.tmp | sort | uniq > $@ + +# Create orcidio_import.owl to extract individuals excluded in the merged_import.owl +$(IMPORTDIR)/orcidio_import.owl: $(MIRRORDIR)/orcidio.owl $(IMPORTDIR)/orcidio_terms_combined.txt + if [ $(IMP) = true ]; then $(ROBOT) filter -i $< -T $(IMPORTDIR)/orcidio_terms_combined.txt --trim false \ + $(ANNOTATE_CONVERT_FILE); fi + # ---------------------------------------- # UNRELEASED PRODUCTS diff --git a/src/sparql/orcids.sparql b/src/sparql/orcids.sparql new file mode 100644 index 0000000000..5e8be78227 --- /dev/null +++ b/src/sparql/orcids.sparql @@ -0,0 +1,7 @@ +PREFIX rdf: +prefix owl: +SELECT DISTINCT ?orcid +WHERE { + ?term ?orcid . + FILTER(isIRI(?term)) +} \ No newline at end of file