-
Notifications
You must be signed in to change notification settings - Fork 30
/
Copy path.gitignore
456 lines (455 loc) · 13.7 KB
/
.gitignore
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
.DS_Store
aminoacid.owl
basic-allcycles
basic-orphans
basic-orphans.tmp
basic.json
basic.obo.tmp1
basic.owl
bfo-check.owl
bfo-check.txt
bridge-check-caro.owl
bridge-check-caro.txt
bridge-check-caro.txt.tmp
bridge-check-wbbt.owl
bridge-check-wbbt.txt
bridge-check-wbls.owl
bridge-check-wbls.txt
bridge/bridges
bridge/uberon-bridge-to-nifstd.obo.tmp
bridge/uberon-bridge-to-vhog.owl.ofn
bspo.owl
chebi.obo
chebi.owl
chebi_import.obo
cl-core.obo
cl-with-xrefs.obo
cl-with-xrefs.obo.tmp
cl_import.obo
composite-metazoan-basic.obo
composite-metazoan-dv.txt
composite-metazoan-dv.txt.tmp
composite-metazoan.obo
composite-metazoan.owl
composite-stages.obo
composite-vertebrate.obo
core.owl
depictions.omn
depictions.owl
ext-obscheck.txt
ext-weak.owl
ext.json
ext.obo
ext.owl
ext.owl.LOG
ext2.owl
external-disjoints.owl
extra-full-bridge-check-caro.txt
extra-full-bridge-check-caro.txt.tmp
full-bridge-check-caro.txt
full-bridge-check-caro.txt.tmp
full-bridge-check-wbbt.txt
full-bridge-check-wbbt.txt.tmp
full-bridge-check-wbls.txt
full-bridge-check-wbls.txt.tmp
go.owl
GO.xrf_abbs
go_import.obo
is_ok
m1.owl
materialized.owl
materialized.owl.LOG
merged-cycles
merged-orphans
merged-orphans.tmp
merged-stages-xrefs.obo
merged-stages-xrefs.obo.tmp
merged.obo
merged.owl
metazoan-view.owl
mirror-caro.owl
mirror-wbbt.owl
mirror-wbls.owl
ncbitaxon.obo
ncbitaxon_import.obo
pato.owl
pato_import.obo
phenoscape-ext-noimports.owl
phenoscape-ext.owl
pr.owl
pr_import.obo
quick-bridge-check-caro.txt
quick-bridge-check-wbbt.txt
quick-bridge-check-wbls.txt
reports/stages-metazoan-report.tsv
reports/uberon_edit-object-properties.csv
ro.owl
ro_import.obo
ro_import.owl.tmp.owl
run.sh
seed.obo
seed.obo.tmp
seed.owl
taxon-constraint-check.txt
trunk/basic.json
trunk/basic.obo
trunk/basic.owl
trunk/bridge/aba.owl
trunk/bridge/cl-bridge-to-aao.obo
trunk/bridge/cl-bridge-to-aao.owl
trunk/bridge/cl-bridge-to-bila.obo
trunk/bridge/cl-bridge-to-bila.owl
trunk/bridge/cl-bridge-to-bspo.obo
trunk/bridge/cl-bridge-to-bspo.owl
trunk/bridge/cl-bridge-to-caro.obo
trunk/bridge/cl-bridge-to-caro.owl
trunk/bridge/cl-bridge-to-ehdaa.obo
trunk/bridge/cl-bridge-to-ehdaa.owl
trunk/bridge/cl-bridge-to-ehdaa2.obo
trunk/bridge/cl-bridge-to-ehdaa2.owl
trunk/bridge/cl-bridge-to-emapa.obo
trunk/bridge/cl-bridge-to-emapa.owl
trunk/bridge/cl-bridge-to-fbbt.obo
trunk/bridge/cl-bridge-to-fbbt.owl
trunk/bridge/cl-bridge-to-fma.obo
trunk/bridge/cl-bridge-to-fma.owl
trunk/bridge/cl-bridge-to-go.obo
trunk/bridge/cl-bridge-to-go.owl
trunk/bridge/cl-bridge-to-hao.obo
trunk/bridge/cl-bridge-to-hao.owl
trunk/bridge/cl-bridge-to-kupo.obo
trunk/bridge/cl-bridge-to-kupo.owl
trunk/bridge/cl-bridge-to-ma.obo
trunk/bridge/cl-bridge-to-ma.owl
trunk/bridge/cl-bridge-to-mfo.obo
trunk/bridge/cl-bridge-to-mfo.owl
trunk/bridge/cl-bridge-to-nif_grossanatomy.obo
trunk/bridge/cl-bridge-to-nif_grossanatomy.owl
trunk/bridge/cl-bridge-to-og.obo
trunk/bridge/cl-bridge-to-og.owl
trunk/bridge/cl-bridge-to-spd.obo
trunk/bridge/cl-bridge-to-spd.owl
trunk/bridge/cl-bridge-to-tads.obo
trunk/bridge/cl-bridge-to-tads.owl
trunk/bridge/cl-bridge-to-tao.obo
trunk/bridge/cl-bridge-to-tao.owl
trunk/bridge/cl-bridge-to-tgma.obo
trunk/bridge/cl-bridge-to-tgma.owl
trunk/bridge/cl-bridge-to-vsao.obo
trunk/bridge/cl-bridge-to-vsao.owl
trunk/bridge/cl-bridge-to-wbbt.obo
trunk/bridge/cl-bridge-to-wbbt.owl
trunk/bridge/cl-bridge-to-wbls.obo
trunk/bridge/cl-bridge-to-wbls.owl
trunk/bridge/cl-bridge-to-xao.obo
trunk/bridge/cl-bridge-to-xao.owl
trunk/bridge/cl-bridge-to-zfa.obo
trunk/bridge/cl-bridge-to-zfa.owl
trunk/bridge/collected-adult-mammal.owl
trunk/bridge/collected-amniote.owl
trunk/bridge/collected-anamniote.owl
trunk/bridge/collected-drosophila.owl
trunk/bridge/collected-embryonic-mammal.owl
trunk/bridge/collected-eukaryote.owl
trunk/bridge/collected-fma.owl
trunk/bridge/collected-human.owl
trunk/bridge/collected-mammal.owl
trunk/bridge/collected-metazoan.owl
trunk/bridge/collected-mouse-with-stages.owl
trunk/bridge/collected-mouse.owl
trunk/bridge/collected-opisthokont.owl
trunk/bridge/collected-teleost.owl
trunk/bridge/collected-tetrapod.owl
trunk/bridge/collected-vertebrate.owl
trunk/bridge/collected-vhog.owl
trunk/bridge/collected-xenopus.owl
trunk/bridge/collected-zebrafish.owl
trunk/bridge/collected-zfa-plus-mammal.owl
trunk/bridge/ext-xref.obo
trunk/bridge/external-disjoints.obo
trunk/bridge/external-disjoints.owl
trunk/bridge/hdr-cl-bridge-to-aao.obo
trunk/bridge/hdr-cl-bridge-to-ehdaa2.obo
trunk/bridge/hdr-cl-bridge-to-emapa.obo
trunk/bridge/hdr-cl-bridge-to-fbbt.obo
trunk/bridge/hdr-cl-bridge-to-fma.obo
trunk/bridge/hdr-cl-bridge-to-ma.obo
trunk/bridge/hdr-cl-bridge-to-sctid.obo
trunk/bridge/hdr-cl-bridge-to-tao.obo
trunk/bridge/hdr-cl-bridge-to-vhog.obo
trunk/bridge/hdr-cl-bridge-to-vsao.obo
trunk/bridge/hdr-cl-bridge-to-xao.obo
trunk/bridge/hdr-cl-bridge-to-zfa.obo
trunk/bridge/hdr-cl-ext-bridge-to-zfa.obo
trunk/bridge/hdr-uberon-bridge-to-aao.obo
trunk/bridge/hdr-uberon-bridge-to-ehdaa2.obo
trunk/bridge/hdr-uberon-bridge-to-emapa.obo
trunk/bridge/hdr-uberon-bridge-to-fbbt.obo
trunk/bridge/hdr-uberon-bridge-to-fma.obo
trunk/bridge/hdr-uberon-bridge-to-ma.obo
trunk/bridge/hdr-uberon-bridge-to-sctid.obo
trunk/bridge/hdr-uberon-bridge-to-tao.obo
trunk/bridge/hdr-uberon-bridge-to-vhog.obo
trunk/bridge/hdr-uberon-bridge-to-vsao.obo
trunk/bridge/hdr-uberon-bridge-to-xao.obo
trunk/bridge/hdr-uberon-bridge-to-zfa.obo
trunk/bridge/hdr-uberon-ext-bridge-to-zfa.obo
trunk/bridge/uberon-bridge-to-aao.obo
trunk/bridge/uberon-bridge-to-aao.owl
trunk/bridge/uberon-bridge-to-aba.obo
trunk/bridge/uberon-bridge-to-aba.owl
trunk/bridge/uberon-bridge-to-aeo.obo
trunk/bridge/uberon-bridge-to-aeo.owl
trunk/bridge/uberon-bridge-to-bfo.obo
trunk/bridge/uberon-bridge-to-bfo.owl
trunk/bridge/uberon-bridge-to-bila.obo
trunk/bridge/uberon-bridge-to-bila.owl
trunk/bridge/uberon-bridge-to-bsd.obo
trunk/bridge/uberon-bridge-to-bspo.obo
trunk/bridge/uberon-bridge-to-bspo.owl
trunk/bridge/uberon-bridge-to-caro.obo
trunk/bridge/uberon-bridge-to-caro.owl
trunk/bridge/uberon-bridge-to-dhba.obo
trunk/bridge/uberon-bridge-to-dhba.owl
trunk/bridge/uberon-bridge-to-dmba.obo
trunk/bridge/uberon-bridge-to-dmba.owl
trunk/bridge/uberon-bridge-to-efo.obo
trunk/bridge/uberon-bridge-to-efo.owl
trunk/bridge/uberon-bridge-to-ehdaa.obo
trunk/bridge/uberon-bridge-to-ehdaa.owl
trunk/bridge/uberon-bridge-to-ehdaa2.obo
trunk/bridge/uberon-bridge-to-ehdaa2.owl
trunk/bridge/uberon-bridge-to-emap.obo
trunk/bridge/uberon-bridge-to-emapa.obo
trunk/bridge/uberon-bridge-to-emapa.owl
trunk/bridge/uberon-bridge-to-ev.obo
trunk/bridge/uberon-bridge-to-ev.owl
trunk/bridge/uberon-bridge-to-fbbt.obo
trunk/bridge/uberon-bridge-to-fbbt.owl
trunk/bridge/uberon-bridge-to-fbdv.obo
trunk/bridge/uberon-bridge-to-fbdv.owl
trunk/bridge/uberon-bridge-to-fma.obo
trunk/bridge/uberon-bridge-to-fma.owl
trunk/bridge/uberon-bridge-to-go.obo
trunk/bridge/uberon-bridge-to-go.owl
trunk/bridge/uberon-bridge-to-hao.obo
trunk/bridge/uberon-bridge-to-hao.owl
trunk/bridge/uberon-bridge-to-hba.obo
trunk/bridge/uberon-bridge-to-hba.owl
trunk/bridge/uberon-bridge-to-hsapdv.obo
trunk/bridge/uberon-bridge-to-hsapdv.owl
trunk/bridge/uberon-bridge-to-ma.obo
trunk/bridge/uberon-bridge-to-ma.owl
trunk/bridge/uberon-bridge-to-mba.obo
trunk/bridge/uberon-bridge-to-mba.owl
trunk/bridge/uberon-bridge-to-mfo.obo
trunk/bridge/uberon-bridge-to-mfo.owl
trunk/bridge/uberon-bridge-to-mmusdv.obo
trunk/bridge/uberon-bridge-to-mmusdv.owl
trunk/bridge/uberon-bridge-to-ncit.obo
trunk/bridge/uberon-bridge-to-ncit.owl
trunk/bridge/uberon-bridge-to-nifstd.obo
trunk/bridge/uberon-bridge-to-nifstd.owl
trunk/bridge/uberon-bridge-to-og.obo
trunk/bridge/uberon-bridge-to-og.owl
trunk/bridge/uberon-bridge-to-oges.obo
trunk/bridge/uberon-bridge-to-oges.owl
trunk/bridge/uberon-bridge-to-olatdv.obo
trunk/bridge/uberon-bridge-to-olatdv.owl
trunk/bridge/uberon-bridge-to-pba.obo
trunk/bridge/uberon-bridge-to-pba.owl
trunk/bridge/uberon-bridge-to-sctid.obo
trunk/bridge/uberon-bridge-to-sctid.owl
trunk/bridge/uberon-bridge-to-spd.obo
trunk/bridge/uberon-bridge-to-spd.owl
trunk/bridge/uberon-bridge-to-tads.obo
trunk/bridge/uberon-bridge-to-tads.owl
trunk/bridge/uberon-bridge-to-tao.obo
trunk/bridge/uberon-bridge-to-tao.owl
trunk/bridge/uberon-bridge-to-tgma.obo
trunk/bridge/uberon-bridge-to-tgma.owl
trunk/bridge/uberon-bridge-to-vao.obo
trunk/bridge/uberon-bridge-to-vhog.obo
trunk/bridge/uberon-bridge-to-vhog.owl
trunk/bridge/uberon-bridge-to-vsao.obo
trunk/bridge/uberon-bridge-to-vsao.owl
trunk/bridge/uberon-bridge-to-wbbt.obo
trunk/bridge/uberon-bridge-to-wbbt.owl
trunk/bridge/uberon-bridge-to-wbls.obo
trunk/bridge/uberon-bridge-to-wbls.owl
trunk/bridge/uberon-bridge-to-xao.obo
trunk/bridge/uberon-bridge-to-xao.owl
trunk/bridge/uberon-bridge-to-zfa.obo
trunk/bridge/uberon-bridge-to-zfa.owl
trunk/bridge/uberon-bridge-to-zfs.obo
trunk/bridge/uberon-bridge-to-zfs.owl
trunk/bridge/uberon-combined-adult-mammal.owl
trunk/bridge/uberon-combined-amniote.owl
trunk/bridge/uberon-combined-embryonic-mammal.owl
trunk/bridge/uberon-combined-eukaryote.owl
trunk/bridge/uberon-combined-mammal.owl
trunk/bridge/uberon-combined-metazoa.owl
trunk/bridge/uberon-combined-opisthokont.owl
trunk/bridge/uberon-combined-vertebrate.owl
trunk/bridge/uberon-combined-zfa-plus-mammal.owl
trunk/bridge/uberon-ext-bridge-to-zfa.obo
trunk/bridge/uberon-ext-bridge-to-zfa.owl
trunk/chebi_import.owl
trunk/cl_import.owl
trunk/composite-metazoan-basic.obo
trunk/composite-metazoan.obo
trunk/composite-metazoan.owl
trunk/composite-vertebrate.obo
trunk/core.obo
trunk/core.owl
trunk/depictions.owl
trunk/diffs/def_diffs.rss
trunk/diffs/Makefile
trunk/diffs/new_term.rss
trunk/diffs/obs_term.rss
trunk/diffs/uberon-combined-diff.txt
trunk/diffs/uberon-diff.md
trunk/diffs/uberon-lastbuild.owl
trunk/envo_import.owl
trunk/ext.json
trunk/ext.obo
trunk/ext.owl
trunk/external-disjoints.obo
trunk/external-disjoints.owl
trunk/go_import.owl
trunk/homology.owl
trunk/merged.obo
trunk/merged.owl
trunk/nbo_import.owl
trunk/ncbitaxon_import.owl
trunk/pato_import.owl
trunk/pr_import.owl
trunk/reference/all-combined.md
trunk/reference/all.md
trunk/reference/index.md
trunk/reference/README-editors.md
trunk/reference/README.md
trunk/reference/reference_0000000.md
trunk/reference/reference_0000001.md
trunk/reference/reference_0000002.md
trunk/reference/reference_0000003.md
trunk/reference/reference_0000004.md
trunk/reference/reference_0000006.md
trunk/reference/reference_0000007.md
trunk/reference/reference_0000008.md
trunk/reference/reference_0000009.md
trunk/reference/reference_0000010.md
trunk/reference/reference_0000014.md
trunk/reference/reference_0000015.md
trunk/reference/reference_0000016.md
trunk/reference/reference_0000017.md
trunk/reference/reference_0000018.md
trunk/reference/reference_0000019.md
trunk/reference/reference_0000021.md
trunk/reference/reference_0000022.md
trunk/reference/reference_0000023.md
trunk/reference/reference_0000024.md
trunk/reference/reference_0000025.md
trunk/reference/reference_0000026.md
trunk/reference/reference_0000027.md
trunk/reference/reference_0000028.md
trunk/reference/reference_0000030.md
trunk/reference/reference_0000032.md
trunk/reference/reference_0000034.md
trunk/reference/reference_0000035.md
trunk/reference/reference_0000036.md
trunk/reference/reference_0000038.md
trunk/reference/reference_0000039.md
trunk/reference/references.md
trunk/reference/test.md
trunk/reference/top.md
trunk/reference/uberonref-idranges.owl
trunk/reference/z.md
trunk/reports/stages-human-report.tsv
trunk/reports/stages-metazoan-report.tsv
trunk/reports/stages-mouse-report.tsv
trunk/reports/stages-xenopus-report.tsv
trunk/ro_import.owl
trunk/subsets/amniote-basic.obo
trunk/subsets/amniote-basic.owl
trunk/subsets/appendicular-minimal.obo
trunk/subsets/appendicular-minimal.owl
trunk/subsets/circulatory-minimal.obo
trunk/subsets/circulatory-minimal.owl
trunk/subsets/cranial-minimal.obo
trunk/subsets/cranial-minimal.owl
trunk/subsets/cumbo.obo
trunk/subsets/cumbo.owl
trunk/subsets/digestive-minimal.obo
trunk/subsets/digestive-minimal.owl
trunk/subsets/efo-slim.obo
trunk/subsets/efo-slim.owl
trunk/subsets/euarchontoglires-basic.obo
trunk/subsets/euarchontoglires-basic.owl
trunk/subsets/excretory-minimal.obo
trunk/subsets/excretory-minimal.owl
trunk/subsets/human-view.obo
trunk/subsets/human-view.owl
trunk/subsets/immune-minimal.obo
trunk/subsets/immune-minimal.owl
trunk/subsets/life-stages-composite.obo
trunk/subsets/life-stages-core.obo
trunk/subsets/life-stages-core.owl
trunk/subsets/merged-partonomy.owl
trunk/subsets/mouse-view.obo
trunk/subsets/mouse-view.owl
trunk/subsets/musculoskeletal-minimal.obo
trunk/subsets/musculoskeletal-minimal.owl
trunk/subsets/nephron-minimal.obo
trunk/subsets/nephron-minimal.owl
trunk/subsets/nervous-minimal.obo
trunk/subsets/nervous-minimal.owl
trunk/subsets/pulmonary-minimal.obo
trunk/subsets/pulmonary-minimal.owl
trunk/subsets/renal-minimal.obo
trunk/subsets/renal-minimal.owl
trunk/subsets/reproductive-minimal.obo
trunk/subsets/reproductive-minimal.owl
trunk/subsets/sensory-minimal.obo
trunk/subsets/sensory-minimal.owl
trunk/subsets/taxon-constraints.owl
trunk/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo
trunk/subsets/vertebrate-head.obo
trunk/uberon-base.owl
trunk/uberon.json
trunk/uberon.obo
trunk/uberon.owl
uberon-base.owl
uberon-cycles
uberon-discv.txt
uberon-dv.txt
uberon-dv.txt.tmp
uberon-obscheck.txt
uberon-orphans
uberon-orphans.tmp
uberon-qc
uberon-synclash
uberon-taxmod-314146.owl
uberon-taxmod-314146.owl.log
uberon-taxmod-32524.owl
uberon-taxmod-32524.owl.log
uberon-taxmod-amniote.obo.tmp
uberon-taxmod-amniote.owl
uberon-taxmod-euarchontoglires.obo
uberon-taxmod-euarchontoglires.obo.tmp
uberon-taxmod-euarchontoglires.owl
uberon.obo.tmp1
uberon.owl
uberon_edit-cycles
uberon_edit-obscheck.txt
uberon_edit-plus-tax-equivs.owl
uberon_edit-xp-check
uberon_edit-xp-check.err
uberon_edit.obo-gocheck
uberon_edit.obo-iconv
uberon_edit.owl
uberon_edit.owl.tmp
unreasoned.owl
update-stages
tmp/
robot_main_diff.md