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EFO-OBA mapping (multiple attribute labels) #236

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ar-ibrahim opened this issue Mar 31, 2023 · 1 comment
Open

EFO-OBA mapping (multiple attribute labels) #236

ar-ibrahim opened this issue Mar 31, 2023 · 1 comment
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@ar-ibrahim
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ar-ibrahim commented Mar 31, 2023

  • will map terms from oba-efo-unreviewed.dosdp.tsv
  • filtered by attribute_labels: atrium, breast, collagen, eyelid, fat body, foot muscle, kidney, liver, lung, pancreas, parathyroid, pericardial adipose tissue, pituitary, prostate, seminal fluid, skin, spleen, thymus, thyroid, tissue
subject_id subject_label quality quality_label attribute attribute_label
EFO:0600035 heart left atrium capacity PATO:0000366 left UBERON:0002081 atrium
EFO:0009393 breast pressure measurement PATO:0001025 pressure UBERON:0000310 breast
EFO:0009092 breast milk measurement PATO:0000001 quality UBERON:0000310 breast
EFO:0008040 breast cancer anti-estrogen resistance protein 3 measurement PATO:0001046 resistance UBERON:0000310 breast
EFO:0020269 collagen alpha-1(viii) chain measurement PATO:0000001 quality GO:0005202 collagen
EFO:0020270 collagen alpha-1(xxiii) chain measurement PATO:0000001 quality GO:0005202 collagen
EFO:0009360 eyelid sagging measurement PATO:0002165 sagging UBERON:0001711 eyelid
EFO:0005409 fat body mass PATO:0000125 mass UBERON:0003917 fat body
EFO:0009890 lean mass-adjusted fat body mass PATO:0000125 mass UBERON:0003917 fat body
EFO:0009699 foot muscle strength measurement PATO:0001230 strength UBERON:0001498 foot muscle
EFO:0010917 kidney injury molecule 1 measurement PATO:0000001 quality UBERON:0002113 kidney
EFO:0008371 kidney amyloid deposition measurement PATO:0000001 quality UBERON:0002113 kidney
EFO:0008374 liver amyloid deposition measurement PATO:0000001 quality UBERON:0002107 liver
EFO:0004582 liver enzyme measurement PATO:0000001 quality UBERON:0002107 liver
EFO:0010056 liver iron measurement PATO:0000001 quality UBERON:0002107 liver
EFO:0600046 lung volume PATO:0000918 volume UBERON:0002048 lung
EFO:0600049 pancreas fat measurement PATO:0000001 quality UBERON:0001264 pancreas
EFO:0004752 parathyroid hormone measurement PATO:0000001 quality UBERON:0001132 parathyroid
EFO:0020622 parathyroid hormone-related protein measurement PATO:0000001 quality UBERON:0001132 parathyroid
EFO:0007890 pericardial adipose tissue measurement PATO:0000001 quality UBERON:0015129 pericardial adipose tissue
EFO:0020640 pituitary adenylate cyclase-activating polypeptide 27 measurement PATO:0000001 quality UBERON:0000007 pituitary
EFO:0020641 pituitary adenylate cyclase-activating polypeptide 38 measurement PATO:0000001 quality UBERON:0000007 pituitary
EFO:0004624 prostate specific antigen measurement PATO:0000001 quality UBERON:0002367 prostate
EFO:0010745 seminal fluid measurement PATO:0000001 quality UBERON:0006530 seminal fluid
EFO:0006868 skin conductance response amplitude PATO:0000080 amplitude UBERON:0000014 skin
EFO:0600094 skin roughness measurement PATO:0000001 quality UBERON:0000014 skin
EFO:0008006 skin aging measurement PATO:0000001 quality UBERON:0000014 skin
EFO:0005766 skin fluorescence measurement PATO:0000018 fluorescence UBERON:0000014 skin
EFO:0009586 skin hydration measurement PATO:0000001 quality UBERON:0000014 skin
EFO:0007009 skin pigmentation measurement PATO:0000001 quality UBERON:0000014 skin
EFO:0006866 galvanic skin response measurement PATO:0000001 quality UBERON:0000014 skin
EFO:0600047 spleen volume PATO:0000918 volume UBERON:0002106 spleen
EFO:0009414 thymus and activation regulated chemokine measurement PATO:0000001 quality UBERON:0002370 thymus
EFO:0004748 thyroid stimulating hormone measurement PATO:0000001 quality UBERON:0002046 thyroid
EFO:0020775 thyroid peroxidase measurement PATO:0000001 quality UBERON:0002046 thyroid
EFO:0004865 thyroid volume PATO:0000918 volume UBERON:0002046 thyroid
EFO:0005666 thyroid peroxidase antibody measurement PATO:0000001 quality UBERON:0002046 thyroid
EFO:0009778 thyroid t3 measurement PATO:0000001 quality UBERON:0002046 thyroid
EFO:0004791 tissue plasminogen activator measurement PATO:0000001 quality UBERON:0000479 tissue
EFO:0007968 tissue factor pathway inhibitor measurement PATO:0000001 quality UBERON:0000479 tissue
@ar-ibrahim ar-ibrahim self-assigned this Mar 31, 2023
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ar-ibrahim commented May 5, 2023

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