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dire need: BIDSFile helper #452
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... to help parse entities from BIDS filenames, as suggested in nipy#452. It adds one use case (in `get_key_info_for_fmap_assignment`), and the corresponding unit tests. TO DO: RF the code using BIDSFile whenever we need to parse a BIDS filename.
@pvelasco -- ha, I started to RF to address this issue and I see that you have implemented BIDSFile helper already in cbinyu@2886525 etc. So that I neither have to "steal" nor "duplicate" your work, could you please add your code (submit a PR from the top of that branch) to https://github.com/nipy/heudiconv/tree/enh-bids to replace my initial class https://github.com/nipy/heudiconv/blob/enh-bids/heudiconv/bids/schema.py#L18 -- just keep that loading of entities from files (could even make it into a lazy property which would load only after first asked for values). If you have no time, no problem -- let me know. I will "steal" and tune your code then into a PR. |
To be used in https://github.com/nipy/heudiconv/pull/441/files#diff-a48009f9efe6cc64ffdb74d06e831296R370 and in code introduced in #424 (number of locations like https://github.com/nipy/heudiconv/pull/424/files#diff-a48009f9efe6cc64ffdb74d06e831296R284). We need some lightweight (not yet full pybids) parsing of BIDS filenames, so we could
_key-value
pairs),_suffix
, and possibly.extension
(everything after '.`) tune upSo I envision a dict like interface (but probably not a sub-class of dict), alike
d'oh -- got carried away and almost coded it all up... so - as you can see - it should be a simple thing , just a few lines missing + tests ;) but it would provide super-powers at many points in the code ;)
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