diff --git a/modules.json b/modules.json index c57ffae7..b99a590e 100644 --- a/modules.json +++ b/modules.json @@ -399,7 +399,7 @@ }, "samtools/view": { "branch": "master", - "git_sha": "669eb24fd82a9d3cb18ad0e73673ecb26827f683", + "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208", "installed_by": ["modules"] }, "sentieon/bwaindex": { diff --git a/modules/nf-core/samtools/view/environment.yml b/modules/nf-core/samtools/view/environment.yml index 02cda6e6..62054fc9 100644 --- a/modules/nf-core/samtools/view/environment.yml +++ b/modules/nf-core/samtools/view/environment.yml @@ -4,7 +4,5 @@ channels: - conda-forge - bioconda dependencies: - # renovate: datasource=conda depName=bioconda/htslib - bioconda::htslib=1.21 - # renovate: datasource=conda depName=bioconda/samtools - bioconda::samtools=1.21 diff --git a/modules/nf-core/samtools/view/main.nf b/modules/nf-core/samtools/view/main.nf index 41fa3d6a..37e05cec 100644 --- a/modules/nf-core/samtools/view/main.nf +++ b/modules/nf-core/samtools/view/main.nf @@ -4,8 +4,8 @@ process SAMTOOLS_VIEW { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/9e/9edc2564215d5cd137a8b25ca8a311600987186d406b092022444adf3c4447f7/data' : - 'community​.wave​.seqera​.io/library/htslib_samtools:1​.21--6cb89bfd40cbaabf' }" + 'https://depot.galaxyproject.org/singularity/samtools:1.21--h50ea8bc_0' : + 'biocontainers/samtools:1.21--h50ea8bc_0' }" input: tuple val(meta), path(input), path(index)