From ec961c5125065d895cb36e29759a8043e390396c Mon Sep 17 00:00:00 2001 From: Eugenia Fontecha Date: Tue, 19 Mar 2024 15:01:41 +0000 Subject: [PATCH] fix github urls in csv files --- tests/csv/panel.csv | 2 +- tests/csv/sample_bam.csv | 6 +++--- tests/csv/sample_vcf.csv | 6 +++--- 3 files changed, 7 insertions(+), 7 deletions(-) diff --git a/tests/csv/panel.csv b/tests/csv/panel.csv index b78d677b..91f70d1d 100644 --- a/tests/csv/panel.csv +++ b/tests/csv/panel.csv @@ -1,2 +1,2 @@ panel,vcf,index,sites,tsv,legend,phased -1000GP.s.norel,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.bcf.csi,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.sites.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.tsv.gz,,TRUE +1000GP.s.norel,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.bcf.csi,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.sites.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.tsv.gz,,TRUE diff --git a/tests/csv/sample_bam.csv b/tests/csv/sample_bam.csv index 05970e33..78269414 100644 --- a/tests/csv/sample_bam.csv +++ b/tests/csv/sample_bam.csv @@ -1,4 +1,4 @@ sample,bam,bai -NA12878,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bam,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bam.bai -NA19401,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bam,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bam.bai -NA20359,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bam,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bam.bai +NA12878,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bam,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bam.bai +NA19401,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bam,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bam.bai +NA20359,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bam,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bam.bai diff --git a/tests/csv/sample_vcf.csv b/tests/csv/sample_vcf.csv index 856af18d..14558dc1 100644 --- a/tests/csv/sample_vcf.csv +++ b/tests/csv/sample_vcf.csv @@ -1,4 +1,4 @@ sample,vcf,csi -NA12878,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bcf.csi -NA19401,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bcf.csi -NA20359,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/blob/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bcf.csi +NA12878,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bcf.csi +NA19401,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bcf.csi +NA20359,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bcf.csi