diff --git a/CHANGELOG.md b/CHANGELOG.md index 6ef061e9..2583ba67 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,10 @@ Initial release of nf-core/phaseimpute, created with the [nf-core](https://nf-co ### `Added` +### `Changed` + +- [#16](https://github.com/nf-core/phaseimpute/pull/16) - Removed outdir from test config files + ### `Fixed` ### `Dependencies` diff --git a/README.md b/README.md index bc0384fb..a049c1a4 100644 --- a/README.md +++ b/README.md @@ -90,8 +90,9 @@ nf-core/phaseimpute was originally written by Louis Le Nézet. We thank the following people for their extensive assistance in the development of this pipeline: -- Anabella Trigilla +- Anabella Trigila - Saul Pierotti +- Matias Romero Victorica ## Contributions and Support diff --git a/conf/test.config b/conf/test.config index e81ac0b4..297d318a 100644 --- a/conf/test.config +++ b/conf/test.config @@ -20,8 +20,6 @@ params { max_time = '6.h' // Input data - // TODO nf-core: Specify the paths to your test data on nf-core/test-datasets - // TODO nf-core: Give any required params for the test so that command line flags are not needed input = "${projectDir}/tests/csv/bam.csv" // Genome references diff --git a/conf/test_full.config b/conf/test_full.config index 2e95f899..1d7f521f 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -32,6 +32,5 @@ params { input = "tests/csv/sample_sim.csv" panel = "tests/csv/panel.csv" input_region_string = "all" - outdir = "results/test_full" step = "simulate" } diff --git a/conf/test_sim.config b/conf/test_sim.config index b8312420..a773b4b8 100644 --- a/conf/test_sim.config +++ b/conf/test_sim.config @@ -23,7 +23,6 @@ params { input = "tests/csv/sample_sim.csv" input_region_file = "tests/csv/regionsheet.csv" depth = [1, 2] - outdir = "results/test_sim" genome = "GRCh38" map = "/groups/dog/llenezet/test-datasets/data/genetic_maps.b38/chr21.b38.gmap.gz"