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DESCRIPTION
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DESCRIPTION
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Package: RNeXML
Type: Package
Title: Implement semantically rich I/O for NeXML format
Version: 1.1.3.99
Authors@R: c(person("Carl", "Boettiger", role = c("cre", "aut"),
email="[email protected]"), person("Scott", "Chamberlain", role =
"aut"), person("Hilmar", "Lapp", role = "aut"), person("Kseniia",
"Shumelchyk", role = "aut"), person("Rutger", "Vos", role = "aut"))
Description: R package that allows access to phyloinformatic data in NeXML
format. The package should add new functionality to R such as the
possibility to manipulate NeXML objects in more various and refined way and
compatibility with 'ape' objects. Note that the Sxslt package suggested can
be installed from the Omegahat repository, though it can also be obtained
from https://github.com/cboettig/Sxslt
License: BSD_3_clause + file LICENSE
Additional_repositories: http://www.omegahat.org/R
VignetteBuilder: knitr
Suggests:
rrdf (>= 2.0.2),
geiger (>= 2.0),
phytools (>= 0.3.93),
knitr (>= 1.5),
rfigshare (>= 0.3.0),
knitcitations (>= 1.0.1),
testthat (>= 0.8.1),
phylobase,
Sxslt
Depends:
R (>= 3.0.0),
ape (>= 3.1),
methods (>= 3.0.0)
Imports:
XML (>= 3.95),
plyr (>= 1.8),
taxize (>= 0.2.2),
reshape2 (>= 1.2.2),
httr (>= 0.3),
uuid (>= 0.1-1)
Collate:
'classes.R'
'add_basic_meta.R'
'add_characters.R'
'add_meta.R'
'add_namespaces.R'
'add_trees.R'
'character_classes.R'
'concatenate_nexml.R'
'get_basic_metadata.R'
'get_characters.R'
'get_metadata.R'
'get_namespaces.R'
'get_rdf.R'
'get_taxa.R'
'get_taxa_meta.R'
'get_trees.R'
'internal_get_node_maps.R'
'internal_isEmpty.R'
'internal_name_by_id.R'
'internal_nexml_id.R'
'meta.R'
'nexmlTree.R'
'nexml_add.R'
'nexml_get.R'
'nexml_methods.R'
'nexml_publish.R'
'nexml_read.R'
'nexml_validate.R'
'nexml_write.R'
'simmap.R'
'taxize_nexml.R'