From 3c114a068b0e2b433d04bd121831062233dc175a Mon Sep 17 00:00:00 2001 From: Julien Cohen-Adad Date: Tue, 12 Dec 2023 14:54:16 -0500 Subject: [PATCH] Update dataset-curation.md context: https://github.com/neuropoly/data-management/issues/282#issuecomment-1852709053 --- data/dataset-curation.md | 29 ++++++++++++++++++----------- 1 file changed, 18 insertions(+), 11 deletions(-) diff --git a/data/dataset-curation.md b/data/dataset-curation.md index fa1255b4..f806510e 100644 --- a/data/dataset-curation.md +++ b/data/dataset-curation.md @@ -535,22 +535,29 @@ sci-bordeaux ├── sub-001 │ └── anat │ └──sub-001_acq-sag_T1w.nii.gz - │ └──sub-001_acq-sag_T2w.nii.gz + │ ├──sub-001_acq-sag_T1w.json + │ ├──sub-001_acq-sag_T2w.nii.gz + │ └──sub-001_acq-sag_T2w.json │ └── derivatives - ├── clinical-labels + ├── labels │ ├── dataset_description.json │ ├── README.md │ └── sub-001 - │ └── anat - │ ├── sub-001_acq-sag_label-SCI_desc-T1w_mask.nii.gz - │ ├── sub-001_acq-sag_label-SCI_desc-T1w_mask.json - │ ├── sub-001_acq-sag_label-compression_desc-T1w_blabel.nii.gz - │ ├── sub-001_acq-sag_label-compression_desc-T1w_blabel.json - │ ├── sub-001_acq-sag_label-SCI_desc-T2w_mask.nii.gz - │ ├── sub-001_acq-sag_label-SCI_desc-T2w_mask.json - │ ├── sub-001_acq-sag_label-compression_desc-T2w_blabel.nii.gz - │ └── sub-001_acq-sag_label-compression_desc-T2w_blabel.json + │ └── anat + │ ├── sub-001_acq-sag_T1w_label-SC_seg.nii.gz # SC seg binary + │ ├── sub-001_acq-sag_T1w_label-SC_softseg.nii.gz # SC seg soft + │ ├── sub-001_acq-sag_T1w_label-vertebrae_dseg # segmentation of vertebrae discrete (each value refers to the vertebral level) + │ ├── sub-001_acq-sag_T1w_label-rootlets_dseg # segmentation of nerve rootlets discrete (each value refers to the spinal level) + │ ├── sub-001_acq-sag_label-SCI_desc-T1w_mask.nii.gz + │ ├── sub-001_acq-sag_label-SCI_desc-T1w_mask.nii.gz + │ ├── sub-001_acq-sag_label-SCI_desc-T1w_mask.json + │ ├── sub-001_acq-sag_label-compression_desc-T1w_blabel.nii.gz + │ ├── sub-001_acq-sag_label-compression_desc-T1w_blabel.json + │ ├── sub-001_acq-sag_label-SCI_desc-T2w_mask.nii.gz + │ ├── sub-001_acq-sag_label-SCI_desc-T2w_mask.json + │ ├── sub-001_acq-sag_label-compression_desc-T2w_blabel.nii.gz + │ └── sub-001_acq-sag_label-compression_desc-T2w_blabel.json │ ├── SC-masks │ ├── dataset_description.json