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Updated Installation (markdown)
Included sample code for cloning from Github; clarified that 'base_check.sh' is the only install script required to install dependencies; noted the potential need to provide user input when running 'base_check.sh'.
Updated Step 3. Interpreting results (markdown)
Updated Troubleshooting (markdown)
Updated Step 2. Running SSUnique (markdown)
Updated Step 1. Setting up a sample analysis (markdown)
Destroyed Step 4. Next steps (markdown)
Updated Step 3. Interpreting reults (markdown)