setup.py

#Taken from https://wiki.python.org/moin/Distutils/Tutorial

import os, sys, glob, fnmatch

## Added 10 Jan 2008
from distutils.core import setup, Extension
import distutils.command.install_data

## Code borrowed from wxPython's setup and config files
## Thanks to Robin Dunn for the suggestion.
## I am not 100% sure what's going on, but it works!
def opj(*args):
    path = os.path.join(*args)
    return os.path.normpath(path)

## Added 10 Jan 2008
# Specializations of some distutils command classes
class wx_smart_install_data(distutils.command.install_data.install_data):
    """need to change self.install_dir to the actual library dir"""
    def run(self):
        install_cmd = self.get_finalized_command('install')
        self.install_dir = getattr(install_cmd, 'install_lib')
        return distutils.command.install_data.install_data.run(self)

def find_data_files(srcdir, *wildcards, **kw):
    # get a list of all files under the srcdir matching wildcards,
    # returned in a format to be used for install_data
    def walk_helper(arg, dirname, files):
        if '.svn' in dirname:
            return
        names = []
        lst, wildcards = arg
        for wc in wildcards:
            wc_name = opj(dirname, wc)
            for f in files:
                filename = opj(dirname, f)

                if fnmatch.fnmatch(filename, wc_name) and not os.path.isdir(filename):
                    names.append(filename)
        if names:
            lst.append( (dirname, names ) )

    file_list = []
    recursive = kw.get('recursive', True)
    if recursive:
        os.path.walk(srcdir, walk_helper, (file_list, wildcards))
    else:
        walk_helper((file_list, wildcards),
                    srcdir,
                    [os.path.basename(f) for f in glob.glob(opj(srcdir, '*'))])
    return file_list

## This is a list of files to install, and where:
## Make sure the MANIFEST.in file points to all the right 
## directories too.
files = find_data_files('axiome/', '*.*')

from setuptools import setup

setup(name='axiome',
	version='2.0.4',
	description='AXIOME2: Automation Extension and Integration of Microbial Ecology',
	url='https://github.com/neufeld/AXIOME2',
	author='Michael Hall',
        author_email='hallm2533@gmail.com',
	classifiers=['Development Status :: 4 - Beta',
	'Environment :: Console',
	'Intended Audience :: Science/Research',
	'License :: OSI Approved :: MIT License',
	'Natural Language :: English',
	'Operating System :: POSIX :: Linux',
	'Topic :: Scientific/Engineering :: Bio-Informatics'],
        license='MIT',
	packages=['axiome'],
	install_requires=['npyscreen'],
	entry_points = {
        'console_scripts': ['axiome=axiome.axiome:main'],
    },
	data_files=files,
	## Borrowed from wxPython too:
	## Causes the data_files to be installed into the modules directory.
	## Override some of the default distutils command classes with my own.
	cmdclass = { 'install_data':    wx_smart_install_data },
	zip_safe=False)