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3.1.2 (2022-11-22)

Fix missing property rooted_tree.sampled_leafs

The sampled_leafs property of rooted_tree is now correctly exposed to Python bindings.

Internal improvements

  • cleanup C++ global namespace
  • run C++ tests in CI
  • run subset of Python examples in CI
  • improve and cleanup CI

3.1.0 (2022-11-22)

Add support to track genealogies with samples from multiple time points

Previously, all sampled taxa in the tree had to be from the last generation. When studying viral evolution one often wants to sample over time. At each generation, a certain number randomly chosen nodes are marked as sampled and not pruned from the tree as evolution proceeds. the final tree will then contain these samples and store their sequences. This functionality was implemented a long time ago and was new resurrected.

3.0.0 (2022-11-22)

Port to Python 3

Port to Python 3 and update to SWIG 4

2.0 (2013-01-25)

Genealogies of loci

1.2.1 (2013-01-11)

Bugfix release

1.2 (2013-01-10)

New functions, better interface files, more docs.

1.1.1 (2012-10-31)

Bugfix release: fixed a bug in haploid_highd::provide_at_least

1.1RC3 (2012-09-21)

  • Single crossover implemented

  • Python documentation expanded

1.0 (2012-07-17)

First stable release