v0.2.12

Fixed

• Update defaults in pairs_from_summary to --min_qscore 7 --max_abs_seqlen_diff 1000

v0.2.11

Fixed

• Passed --trim_start and --trim_end from cli to main function for split_on_adapter

v0.2.10

Added

• Flags --trim_start and --trim_end for split_on_adapter (#13)

v0.2.9

Added

• Flag to allow splitting multiple times for reads with multiple adapters
• Moving debug output and edited reads to the main output directory

v0.2.7

Fixed

• split_on_adapter also defaults to both .fastq and fastq.gz from cli

Added

• Options --min_qscore and --max_abs_seqlen_diff to find duplex reads
• Default filtering on min_qscore (12) and maximum length difference in pairs_from_summary for duplex reads

v0.2.6

Fixed

• Surprising behaviour in split_on_adapter to only work on gzipped fastqs by default

v0.2.5

Added

• Arguments --max_length and --min_length in filter_pairs

v0.2.4

Changed

• Fixeda argument bug in split_on_adapter. sample_type is now positional

v0.2.3

Changed

• Corrected documentation for fillet.md.
• Enabled multiprocessing for fastq extraction in filter_pairs.

v0.2.1

Changed

• Documentation for read splitting