-
Notifications
You must be signed in to change notification settings - Fork 1
/
base_info.py
179 lines (165 loc) · 6.41 KB
/
base_info.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Configuration file for assimilation
"""
__author__ = "Saeed Moghimi"
__copyright__ = "Copyright 2014, Oregon State University"
__license__ = "GPL"
__version__ = "0.1"
__email__ = "[email protected]"
### 2D >>>>>
base_dir = '/home/shusin3/shared/assim/dah_test2_saeed2'
run_type = '2D'
################################################################################
inp_dir='/home/nmg/nmg/assimilation/set6_python_test_case/inp'
scr_dir='/home/nmg/nmg/assimilation/set6_python_test_case/pysimHonegger'
################################################################################
###################### BASIC DATA #############################################
# number of iterations
nstart = 0
nend = 1
############ List of available servers >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
servers=[#'irarum',
#'rimus',
#'nanum',
'tirigan',
#'criss',
#'stanley',
#'dudu',
#'gudea',
#'hablum',
#'kurum',
]
########### Type of operation (TWIN test or Real data assimilation) >>>
real_data = False # False: use synthetic data True: use read observation
uv_curv = False # always false <<<<<<<< to use curvilinear grid to exteract align curve velocity
############ Which model is going to be assimilated >>>>>>>>>>>>>>>>>>>>>>>>
#Only one of the below options could be TRUE
#Here starts different arrangements
asim_sar = True # 2. ROMS alone assimilation (waves=False)
asim_wav = True # 3. SWAN alone assimilation (change the option in
# matlab code to not include velocity in assimilation
# but ROMS still needs to run for getting current into
# SWAN
############ In case of assimilating a SWIFT data >>>>>>>>>>>>>>>>>>>>
asim_swf = False #assimilate swift data
############ In case of assimilating a second SAR image >>>>>>>>>>>>>>>>>>>>
asim_sar2 = False # always False <<<<<< not working at this point
################################################################################
###### Name of the scripts will be used by main script to treat the files ####
################################################################################
#scripts name
#ROMS
main_scr = '00-run_assim_noIter.py'
mk_bathy = '01-make_bathy_bumps.m'
adj_bathy = '02-adjust_bathy_dh.py'
do_run = '03-doRuns.sh'
adj_mem = '04-simplify_roms.py'
########################################
do_assim_python = '05-py-assimilate.py'
do_pre_assim_sar = '05-pre_asim_cur.py'
do_pre_assim_wav = '05-pre_asim_wav.py'
do_pre_assim_swf = '05-pre_asim_swf.py'
#######################################
mat2prior ='06-posterior2prior.py'
#SWAN
pre_wav_scr ='04-roms2swan.py'
adj_wav_scr ='04-simplify_swan.py'
#SWIFT
pre_swf_scr ='04-roms2swift.py'
################################################################################
#### Generating ensemble members (bathymetry) >>>>>>>>>>>>>>>>>>>>
#making members bathymetry
N = 10 #number of members
###########################################################################
equal_space = True
# perturbation scales
if equal_space:
#Radius equal to LixLj times number of grid point perturbations
Li = 300;
Lj = 300;
else:
Li = 25;
Lj = 25;
# depth of bumps
Lz = 0.5,0.3,0.2,
cov_hh_limit = 1.5,1.5,1.5, # consistent with ebb case
jump_wav = 2 #jump over data points (every other data points for j=2)
jump_cur = 2
Localize_len = 400 # in meter
###########
increase_sar_err_when_waves = False
if increase_sar_err_when_waves:
wav_cur_data_min_dist = 40 #[m]
cur_data_err_increase_coef = 5
########################################
increase_swf_err_when_sar = False
if increase_swf_err_when_sar:
swf_cur_data_min_dist = 5 #[m]
swf_data_err_increase_coef = 5
########################################
sar_const_err = 0.2 #[ms-1]
########################################
## Define assimilation window ###
# [0,-1] is full domain (default)
ix=0,-1
jy=0,-1
if real_data:
########## Real STUFF ######################################
# which data set to assimilate in each assimilation iteration
obs_flood = 'XXXX20120513_132446_stitched_ks.nc'
obs_ebb = '20120510_182231_stitched.nc'
##
sar_err_reduction = 1.0,1.0,1.0,1.0
radar_err_reduction = 1.0,1.0,1.0,1.0
swift_err_reduction = 0.05,0.05,0.05,0.05
else:
########## SYN STUFF ######################################
obs_flood = 'obs_syn1nri_flood.nc'
obs_ebb = 'obs_syn1nri_ebb.nc'
sar_err_reduction = 1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
radar_err_reduction = 1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0,1.0
swift_err_reduction = 0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05,0.05 # this makes swift error 5 cm/s
############################################################
e='ebb'
f='flood'
#choose_tide = f,f,f,f,f,f
#choose_tide = e,f,e,f,e,f
choose_tide = e,e,e,e,e,e
## Wave model info
wave_exe = '/swan/' + 'swan_ser'
wave_inp_file = '/swan/' + 'input_rect_local.swn'
## ROMS info
# Forcing files
prior = 'new_prior.nc'
if run_type == '3D':
ocean_exe = '/roms_3d/' + '30_roms'
roms_inp = '/roms_3d/' + 'romsInput_3d.in'
grd = '/roms_3d/' + 'nri_regional_grd_roms_20120510_not_smooth.nc'
bry = '/roms_3d/' + 'bry_local_v0_3d_from_wl_obs_ver0.nc'
initial = '/roms_3d/' + 'clm_init_nri_his_0009_last_ini.nc'
varinfo = '/roms_3d/' + 'varinfo.dat'
##### METEO stuff ##
meteo_dir = '/roms_3d/' + '/meteo/'
cloud = meteo_dir + 'cloud.nc'
Qair = meteo_dir + 'Qair.nc'
Uwind = meteo_dir + 'Uwind.nc'
Vwind = meteo_dir + 'Vwind.nc'
lwrad_down = meteo_dir + 'lwrad_down.nc'
net_swrad = meteo_dir + 'net_swrad0.8.nc'
rain = meteo_dir + 'rain.nc'
Tair = meteo_dir + 'Tair.nc'
Pair = meteo_dir + 'Pair.nc'
#
hisfile_name = 'nri_his_0001.nc'
################
else:
ocean_exe = '/roms_2d/' + 'coawstS'
roms_inp = '/roms_2d/' + 'romsInput_3d_4_2d.in'
grd = '/roms_2d/' + 'grd_local_20120510.nc'
bry = '/roms_2d/' + 'bry_local_v0_3d_from_wl_obs_ver0.nc'
initial = '/roms_2d/' + 'clm_init_nri_his_0009_last_ini.nc'
varinfo = '/roms_2d/' + 'varinfo.dat'
#
hisfile_name = 'nri_his_0001.nc'