Trouble collecting stats #333
anishshriram
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What is L48 for inputDir = os.path.normpath(args.modelDir) You might be running an older version of GaNDLF, perhaps? |
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GaNDLF Version
0.0.14-dev
Desktop (please complete the following information):
How did you install GaNDLF
Followed instructions on documentation website:
Dataset description
I am using the BraTS 2021 dataset.
Description from website:
Routine clinically-acquired multi-parametric MRI (mpMRI) scans of glioma, with pathologically confirmed diagnosis and available MGMT promoter methylation status (for the glioblastoma cases with such associated data). All BraTS mpMRI scans are available as NIfTI files (.nii.gz) for Segmentation, which is the use in this issue. These mpMRI scans describe a) native (T1) and b) post-contrast T1-weighted (T1Gd), c) T2-weighted (T2), and d) T2 Fluid Attenuated Inversion Recovery (T2-FLAIR) volumes.
Describe your question/problem
I have finished testing and validation, with my models saved at:
/cbica/home/shrirama/comp_space/project/meningioma/models_2
It finished without errors.
I am trying to collect statistics from the final models, but the following error is presented.
I followed the instructions on the docs website to collect stats:
Am I doing something wrong when calling
gandlf_collectStats
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