From 14c3e03d2c7f035dfe305d0988a331b2382fb85c Mon Sep 17 00:00:00 2001 From: Mahesh Binzer-Panchal Date: Fri, 8 Nov 2024 13:40:32 +0000 Subject: [PATCH 1/4] Update Gitpod to use Miniforge instead of Miniconda --- nf_core/gitpod/gitpod.Dockerfile | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/nf_core/gitpod/gitpod.Dockerfile b/nf_core/gitpod/gitpod.Dockerfile index 2a9fbb0ed6..78a528c19d 100644 --- a/nf_core/gitpod/gitpod.Dockerfile +++ b/nf_core/gitpod/gitpod.Dockerfile @@ -23,9 +23,9 @@ RUN apt-get update --quiet && \ add-apt-repository -y ppa:apptainer/ppa && \ apt-get update --quiet && \ apt-get install --quiet --yes apptainer && \ - wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \ - bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda && \ - rm Miniconda3-latest-Linux-x86_64.sh && \ + wget --quiet https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh && \ + bash Miniforge3-Linux-x86_64.sh -b -p /opt/conda && \ + rm Miniforge3-Linux-x86_64.sh && \ apt-get clean && \ rm -rf /var/lib/apt/lists/* From f410310b4da481d8c64a64ad1ba2564ee388458c Mon Sep 17 00:00:00 2001 From: Mahesh Binzer-Panchal Date: Fri, 8 Nov 2024 13:44:25 +0000 Subject: [PATCH 2/4] Update Changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 61d8dbf518..27534ed62c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -35,6 +35,7 @@ - Update GitHub Actions ([#3237](https://github.com/nf-core/tools/pull/3237)) - add `--dir/-d` option to schema commands ([#3247](https://github.com/nf-core/tools/pull/3247)) - Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.1 ([#3250](https://github.com/nf-core/tools/pull/3250)) +- Update Gitpod image to use Miniforge instead of Miniconda([#3274](https://github.com/nf-core/tools/pull/3274)) ## [v3.0.2 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.2) - [2024-10-11] From 5f900fd8680dee855c8be001cb75318ebf35f2fa Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Fri, 8 Nov 2024 20:46:55 +0000 Subject: [PATCH 3/4] Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.3 --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index ec1ad5b430..5e98d76d05 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,6 +1,6 @@ repos: - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.7.1 + rev: v0.7.3 hooks: - id: ruff # linter args: [--fix, --exit-non-zero-on-fix] # sort imports and fix From ab2fbed2dc77eb243d8588cc54b319ceda8bb3d7 Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Fri, 8 Nov 2024 20:47:51 +0000 Subject: [PATCH 4/4] [automated] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 27534ed62c..6e85830775 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -36,6 +36,7 @@ - add `--dir/-d` option to schema commands ([#3247](https://github.com/nf-core/tools/pull/3247)) - Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.1 ([#3250](https://github.com/nf-core/tools/pull/3250)) - Update Gitpod image to use Miniforge instead of Miniconda([#3274](https://github.com/nf-core/tools/pull/3274)) +- Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.3 ([#3275](https://github.com/nf-core/tools/pull/3275)) ## [v3.0.2 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.2) - [2024-10-11]