diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index ec1ad5b430..5e98d76d05 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,6 +1,6 @@ repos: - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.7.1 + rev: v0.7.3 hooks: - id: ruff # linter args: [--fix, --exit-non-zero-on-fix] # sort imports and fix diff --git a/CHANGELOG.md b/CHANGELOG.md index 82c8180d93..a449cf681f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -36,6 +36,8 @@ - add `--dir/-d` option to schema commands ([#3247](https://github.com/nf-core/tools/pull/3247)) - Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.1 ([#3250](https://github.com/nf-core/tools/pull/3250)) - handle new schema structure in `nf-core pipelines create-params-file` ([#3276](https://github.com/nf-core/tools/pull/3276)) +- Update Gitpod image to use Miniforge instead of Miniconda([#3274](https://github.com/nf-core/tools/pull/3274)) +- Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.3 ([#3275](https://github.com/nf-core/tools/pull/3275)) ## [v3.0.2 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.2) - [2024-10-11] diff --git a/nf_core/gitpod/gitpod.Dockerfile b/nf_core/gitpod/gitpod.Dockerfile index 2a9fbb0ed6..78a528c19d 100644 --- a/nf_core/gitpod/gitpod.Dockerfile +++ b/nf_core/gitpod/gitpod.Dockerfile @@ -23,9 +23,9 @@ RUN apt-get update --quiet && \ add-apt-repository -y ppa:apptainer/ppa && \ apt-get update --quiet && \ apt-get install --quiet --yes apptainer && \ - wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \ - bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda && \ - rm Miniconda3-latest-Linux-x86_64.sh && \ + wget --quiet https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh && \ + bash Miniforge3-Linux-x86_64.sh -b -p /opt/conda && \ + rm Miniforge3-Linux-x86_64.sh && \ apt-get clean && \ rm -rf /var/lib/apt/lists/*