Issues with floating point exception

[ebutoto]

Hi,

I am trying to run ngsStats to get Ho and He for two maize subpopulations.
I keep running into 236622 Floating point exception(core dumped) issues.
I have been following this example: https://github.com/mfumagalli/ngsPopGen/blob/9ee3a6d5e733c1e248e81bfc21514b0527da967b/examples/test.sh. I am using a common set of sites and only testing chr 10 before moving on to the rest of the genome. However, the file thread jumps to chr1, which is not in my -sites file even after pointing to chr10 as the chromosome of interest. I checked the .fai file and the chr format matches what I put in the argument.

I apologize in advance, I am new to angsd and ngsTools so it might be a simple mistake. If you have any suggestions on how to address this, I would appreciate it.

[mfumagalli]

Hi, if you wish to learn from some working examples, then I suggest this tutorial https://github.com/mfumagalli/ngsTools/blob/master/TUTORIAL.md Also, ngsTools is now largely overcome by ANGSD and you should use ANGSD for estimating those quantities.

…

________________________________ From: ebutoto ***@***.***> Sent: 10 October 2024 7:52 PM To: mfumagalli/ngsPopGen ***@***.***> Cc: Subscribed ***@***.***> Subject: [mfumagalli/ngsPopGen] Issues with floating point exception (Issue #12) Hi, I am trying to run ngsStats to get Ho and He for two maize subpopulations. I keep running into 236622 Floating point exception(core dumped) issues. I have been following this example: https://github.com/mfumagalli/ngsPopGen/blob/9ee3a6d5e733c1e248e81bfc21514b0527da967b/examples/test.sh. I am using a common set of sites and only testing chr 10 before moving on to the rest of the genome. However, the file thread jumps to chr1, which is not in my -sites file even after pointing to chr10 as the chromosome of interest. I checked the .fai file and the chr format matches what I put in the argument. I apologize in advance, I am new to angsd and ngsTools so it might be a simple mistake. If you have any suggestions on how to address this, I would appreciate it. — Reply to this email directly, view it on GitHub<#12>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AAQ26CLP6M3PHMNZMCX7UCTZ23EIVAVCNFSM6AAAAABPXNH2QKVHI2DSMVQWIX3LMV43ASLTON2WKOZSGU3TSNJZGU3TSOI>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>