DESCRIPTION

Package: CrispRVariants
Type: Package
Title: Tools for counting and visualising mutations in a target location
Version: 0.99.7
Authors@R: c(person(given = "Helen", family = "Lindsay", role = c("aut", "cre"), email =
          "helen.lindsay@uzh.ch"))
Author: Helen Lindsay [aut, cre]
Maintainer: Helen Lindsay <helen.lindsay@uzh.ch>
Description: CrispRVariants provides tools for analysing the results of a
    CRISPR-Cas9 mutagenesis sequencing experiment, or other sequencing experiments
    where variants within a given region are of interest. These tools allow users to
    localize variant allele combinations with respect to any genomic location (e.g.
    the Cas9 cut site), plot allele combinations and calculate mutation rates with
    flexible filtering of unrelated variants.
biocViews: GenomicVariation, VariantDetection, GeneticVariability,
    DataRepresentation, Visualization
LazyData: true
Depends:
    R (>= 3.3),
    ggplot2
License: GPL-2
Imports:
    AnnotationDbi,
    BiocParallel,
    Biostrings,
    methods,
    GenomeInfoDb,
    GenomicAlignments,
    GenomicRanges,
    grid,
    gridExtra,
    IRanges,
    reshape2,
    Rsamtools,
    S4Vectors (>= 0.9.38),
Suggests:
    BiocStyle,
    gdata,
    GenomicFeatures,
    knitr,
    rmarkdown,
    rtracklayer,
    sangerseqR,
    testthat,
    VariantAnnotation
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 5.0.1