From 134ada76dbb4b77aa78549cfb3d98f95c1337d0f Mon Sep 17 00:00:00 2001
From: Pascal Sauer <156898545+pascal-sauer@users.noreply.github.com>
Date: Tue, 24 Sep 2024 12:07:51 +0200
Subject: [PATCH 1/3] pkgType

---
 .Rprofile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.Rprofile b/.Rprofile
index 43d47c62c..bc514ec1f 100644
--- a/.Rprofile
+++ b/.Rprofile
@@ -37,5 +37,5 @@ if (isTRUE(rownames(installed.packages(priority = "NA")) == "renv")) {
 
 # in case bootstrapping fails halfway, install piamenv and rely on requirement auto-fixing
 if (tryCatch(utils::packageVersion("piamenv") < "0.5.5", error = function(error) TRUE)) {
-  renv::install("piamenv", type = getOption("pkgType"), prompt = FALSE)
+  renv::install("piamenv", prompt = FALSE)
 }

From f3bea2e8729086cb3a45a72dd4f2d2078317c3c9 Mon Sep 17 00:00:00 2001
From: Pascal Sauer <156898545+pascal-sauer@users.noreply.github.com>
Date: Wed, 16 Oct 2024 10:23:42 +0200
Subject: [PATCH 2/3] renv 1.0.11

---
 renv/activate.R | 10 ++++------
 1 file changed, 4 insertions(+), 6 deletions(-)

diff --git a/renv/activate.R b/renv/activate.R
index c360bf296..0eb51088a 100644
--- a/renv/activate.R
+++ b/renv/activate.R
@@ -2,7 +2,7 @@
 local({
 
   # the requested version of renv
-  version <- "1.0.9"
+  version <- "1.0.11"
   attr(version, "sha") <- NULL
 
   # the project directory
@@ -368,8 +368,7 @@ local({
       quiet    = TRUE
     )
   
-    if ("headers" %in% names(formals(utils::download.file)))
-    {
+    if ("headers" %in% names(formals(utils::download.file))) {
       headers <- renv_bootstrap_download_custom_headers(url)
       if (length(headers) && is.character(headers))
         args$headers <- headers
@@ -457,9 +456,8 @@ local({
   
         # add custom headers if available -- note that
         # utils::available.packages() will pass this to download.file()
-        if ("headers" %in% names(formals(utils::download.file)))
-        {
-          headers <- renv_bootstrap_download_custom_headers(url)
+        if ("headers" %in% names(formals(utils::download.file))) {
+          headers <- renv_bootstrap_download_custom_headers(repos)
           if (length(headers) && is.character(headers))
             args$headers <- headers
         }

From 408062ec202279c879aaa06a11f2cfb664052407 Mon Sep 17 00:00:00 2001
From: Pascal Sauer <156898545+pascal-sauer@users.noreply.github.com>
Date: Wed, 16 Oct 2024 10:33:43 +0200
Subject: [PATCH 3/3] prevent warning by installing rmarkdown

---
 .Rprofile | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.Rprofile b/.Rprofile
index bc514ec1f..049e1ce91 100644
--- a/.Rprofile
+++ b/.Rprofile
@@ -27,6 +27,7 @@ if (!"https://rse.pik-potsdam.de/r/packages" %in% getOption("repos")) {
 # bootstrapping, will only run once after this repo is freshly cloned
 if (isTRUE(rownames(installed.packages(priority = "NA")) == "renv")) {
   message("R package dependencies are not installed in this renv, installing now...")
+  renv::install("rmarkdown", prompt = FALSE) # rmarkdown is required to find dependencies in Rmd files
   renv::hydrate(prompt = FALSE, report = FALSE) # auto-detect and install all dependencies
   message("Finished installing R package dependencies.")
   if (!("upstream" %in% gert::git_remote_list()$name)) {