From 006e0efd02bf2415e52c381adf89ca65a7d3a2b1 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Fri, 30 Aug 2024 13:55:57 +0800 Subject: [PATCH 01/28] R-archivist: update to 2.3.8 --- R/R-archivist/Portfile | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/R/R-archivist/Portfile b/R/R-archivist/Portfile index ae88f2a5c279a..0d4bbecc6facb 100644 --- a/R/R-archivist/Portfile +++ b/R/R-archivist/Portfile @@ -4,19 +4,19 @@ PortSystem 1.0 PortGroup R 1.0 # GutHub version is old. -R.setup cran pbiecek archivist 2.3.6 -revision 2 +R.setup cran pbiecek archivist 2.3.8 +revision 0 categories-append sysutils +platforms {darwin any} maintainers {@barracuda156 gmail.com:vital.had} openmaintainer license GPL-2 description Tools for storing, restoring and searching for R objects long_description {*}${description} homepage https://pbiecek.github.io/archivist -checksums rmd160 7d312448d2a1003c6fdea7276727759df62e00f0 \ - sha256 8991cc711e749d38c1c94953f888d4b0a07c663625eebd5aff1d8cc994f63860 \ - 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sha256 18e8fef85c26c0011719b5b74d5837f2dfb05f61daf005fa67dda99fe4883325 \ - size 1907322 +checksums rmd160 16144cc954dcbacd4233a19323f9aa191f37dbea \ + sha256 9d21c310d5e70ab81dc2585eef2c8fa714e6533f74b0000fad3106f93ebbdccf \ + size 1940554 supported_archs noarch depends_lib-append port:R-generics \ port:R-sf \ port:R-tibble -depends_test-append port:R-ggplot2 \ +depends_test-append port:R-emmeans \ + port:R-estimability \ + port:R-ggplot2 \ port:R-knitr \ port:R-pROC \ port:R-ranger \ From acf1d4b1661e1aa12144a50684193c049b5a52b9 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Fri, 30 Aug 2024 14:32:01 +0800 Subject: [PATCH 21/28] R-startupmsg: update to 0.9.7 --- R/R-startupmsg/Portfile | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/R/R-startupmsg/Portfile b/R/R-startupmsg/Portfile index 52c25f05ad65f..6c07bab0cfe8d 100644 --- a/R/R-startupmsg/Portfile +++ b/R/R-startupmsg/Portfile @@ -3,16 +3,16 @@ PortSystem 1.0 PortGroup R 1.0 -R.setup cran peter.ruckdeschel startupmsg 0.9.6.1 -revision 1 +R.setup cran peter.ruckdeschel startupmsg 0.9.7 +revision 0 +platforms {darwin any} maintainers nomaintainer license LGPL-3 description Utilities for start-up messages long_description {*}${description} -checksums rmd160 fb7eb9a06111c63fcf3a6a420f73b3d3f82856f2 \ - 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Output may be in LaTeX, HTML, plain text or an R matrix \ for further processing. homepage https://dmurdoch.github.io/tables -checksums rmd160 7e6db0f150520d5b50ec683e2ff27efecff0ec59 \ - sha256 ccd2cf3c490af14e424feda39ffc445d74cabc0c2c920765eab44b26515fb329 \ - size 339300 +checksums rmd160 88b5cf368ccdb0ba44a4c91f2c9159ba468dd427 \ + sha256 b81acf193e30a259afc273888d833fd7b4954b3a184bd4de44d798e08d9ce88c \ + size 339840 supported_archs noarch depends_lib-append port:R-htmltools \ From 75d191e8226471068be7f51e3a8a3cca979c95c2 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Fri, 30 Aug 2024 14:34:11 +0800 Subject: [PATCH 23/28] R-telescope: new port --- R/R-telescope/Portfile | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 R/R-telescope/Portfile diff --git a/R/R-telescope/Portfile b/R/R-telescope/Portfile new file mode 100644 index 0000000000000..f55b218e833bb --- /dev/null +++ b/R/R-telescope/Portfile @@ -0,0 +1,33 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup cran Gertraud.Malsiner-Walli telescope 0.1-0 +revision 0 +categories-append math +platforms {darwin any} +maintainers {@barracuda156 gmail.com:vital.had} openmaintainer +license GPL-2 +description Bayesian mixtures with an unknown number of components +long_description Fits Bayesian finite mixtures with an unknown number of components \ + using the telescoping sampler and different component distributions. +checksums rmd160 acf682918af95673869db6dae222b60f0cebb0c4 \ + sha256 908dfa970c6c15bb8076e22f7719cea7dc436bd80f4ab120f9c74b117c8ccce4 \ + size 743910 +supported_archs noarch + +depends_lib-append port:R-abind \ + port:R-bayesm \ + port:R-DirichletReg \ + port:R-extraDistr \ + port:R-MCMCpack \ + port:R-mvtnorm + +depends_test-append port:R-klaR \ + port:R-knitr \ + port:R-mclust \ + port:R-poLCA \ + port:R-rmarkdown + +test.run yes From 886f384a8800311ff2805fc03c51671de7235f20 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Fri, 30 Aug 2024 14:34:37 +0800 Subject: [PATCH 24/28] R-Ternary: update to 2.3.3 --- R/R-Ternary/Portfile | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/R/R-Ternary/Portfile b/R/R-Ternary/Portfile index faf88e0de30c3..d8db0b1a726c2 100644 --- a/R/R-Ternary/Portfile +++ b/R/R-Ternary/Portfile @@ -3,7 +3,7 @@ PortSystem 1.0 PortGroup R 1.0 -R.setup github ms609 Ternary 2.3.2 +R.setup github ms609 Ternary 2.3.3 revision 0 categories-append graphics platforms {darwin any} @@ -12,17 +12,16 @@ license GPL-2+ description Create Ternary and Holdridge plots long_description {*}${description} homepage https://ms609.github.io/Ternary -checksums rmd160 69cf2ee75a80be94404cc2fe45eb77c0f86e290b \ - sha256 aa802e75fce339b81223659d25894052db4ccb6b216637fdf6a77baa5b81ae7c \ - size 778639 +checksums rmd160 e82066a31131b8eed3e083e31972d4aa7affb3ec \ + sha256 70a4a486ae4dca4ffbcf0b3aa6f05a1c77bc05602c71d7efba124e6ea621915e \ + size 778302 github.tarball_from archive supported_archs noarch depends_lib-append port:R-PlotTools \ port:R-RcppHungarian \ port:R-shiny \ - port:R-sp \ - port:R-viridisLite + port:R-sp # FIXME: one test fails: # https://github.com/ms609/Ternary/issues/87 From 3f33b756274daf00da7c971b371f12bd805baccb Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Fri, 30 Aug 2024 14:35:05 +0800 Subject: [PATCH 25/28] R-unmarked: update to 1.4.2 --- R/R-unmarked/Portfile | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/R/R-unmarked/Portfile b/R/R-unmarked/Portfile index cb9cbeb3ed73f..6896f07ba58a2 100644 --- a/R/R-unmarked/Portfile +++ b/R/R-unmarked/Portfile @@ -4,16 +4,16 @@ PortSystem 1.0 PortGroup R 1.0 # GitHub version is archaic. -R.setup cran kaskr unmarked 1.4.1 -revision 1 +R.setup cran kaskr unmarked 1.4.2 +revision 0 maintainers nomaintainer license GPL-3+ description Models for data from unmarked animals long_description {*}${description} homepage https://rbchan.github.io/unmarked -checksums rmd160 963fcdde80b1341d362b89321bdac859e1f6a419 \ - sha256 1c277248ad00122f404aabd0f0bbdeaf1cd69c58b65faaf23e36ee39f1e750c7 \ - size 1558102 +checksums rmd160 4039754a3e0218c222a13afc0b1192b8c3692e11 \ + sha256 f097660b6a0867f2cbe84dd359c4adc4f0c217a25d2072333166ccca015aa8d5 \ + size 1234259 depends_lib-append port:R-lme4 \ port:R-Rcpp \ From 6857c9fb3075a73d4ecb345d40e1ef55b9b7bd75 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Fri, 30 Aug 2024 14:57:28 +0800 Subject: [PATCH 26/28] R-walker: update to 1.0.10 --- R/R-walker/Portfile | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/R/R-walker/Portfile b/R/R-walker/Portfile index 455896725d321..09d05b5651188 100644 --- a/R/R-walker/Portfile +++ b/R/R-walker/Portfile @@ -4,16 +4,17 @@ PortSystem 1.0 PortGroup R 1.0 # GitHub version is archaic. -R.setup cran helske walker 1.0.8 -revision 2 +R.setup cran helske walker 1.0.10 +revision 0 categories-append math maintainers {@barracuda156 gmail.com:vital.had} openmaintainer license GPL-3+ description Bayesian generalized linear models with time-varying coefficients long_description {*}${description} -checksums rmd160 6b241d2fffce9daaf4a2039f9f986dc22c93d362 \ - sha256 99b89959be9e0d9def1e51c2bd1a5a9ea53595651a4435f3e03373e4e69012f9 \ - size 2199249 +homepage https://github.com/helske/walker +checksums rmd160 7e81b8cf069ddd2f50a45fd876293e3eff45f9c3 \ + sha256 2b220cfdccb4ac36432b33dd72fc9a8f50a0468dc80be972e9216de87dd4b78c \ + size 2203130 depends_lib-append port:R-bayesplot \ port:R-BH \ From d2aef3a40383bc2f8e30a5a9b40a9cc43c8d0174 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Fri, 30 Aug 2024 14:35:29 +0800 Subject: [PATCH 27/28] R-WH: update to 1.1.2 --- R/R-WH/Portfile | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/R/R-WH/Portfile b/R/R-WH/Portfile index cd1a9eaa36b63..fc59e7c6b452c 100644 --- a/R/R-WH/Portfile +++ b/R/R-WH/Portfile @@ -4,19 +4,19 @@ PortSystem 1.0 PortGroup R 1.0 # Revert to GitHub once updated there. -R.setup cran GuillaumeBiessy WH 1.1.1 -revision 1 +R.setup cran GuillaumeBiessy WH 1.1.2 +revision 0 categories-append math +platforms {darwin any} maintainers nomaintainer license GPL-3+ description Enhanced implementation of Whittaker–Henderson smoothing long_description {*}${description} homepage https://github.com/GuillaumeBiessy/WH -checksums rmd160 328c4040dab55fb814d1f96af910c3e4986cca24 \ - sha256 3598f5659c2ccbe5d169ee556e7f90ecccdab33df0c4528ae569df132aaac2b5 \ - size 193077 +checksums rmd160 73739d38861ae3043190e2749b1e1c4d5127fdbd \ + sha256 9eec032f23600f803cc4315a469b435d167d810748e26dac269392b5c7f27443 \ + size 193511 supported_archs noarch -platforms {darwin any} depends_test-append port:R-knitr \ port:R-rmarkdown \ From 6dbd219aae6fbe8a75b6619d06469cd29f0695d4 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Fri, 30 Aug 2024 14:11:54 +0800 Subject: [PATCH 28/28] R-distr*: update family of packages --- R/R-ROptEst/Portfile | 29 +++++++++++++++++++++++++++++ R/R-RobAStBase/Portfile | 30 ++++++++++++++++++++++++++++++ R/R-RobAStRDA/Portfile | 21 +++++++++++++++++++++ R/R-RobExtremes/Portfile | 34 ++++++++++++++++++++++++++++++++++ R/R-RobLox/Portfile | 28 ++++++++++++++++++++++++++++ R/R-distr/Portfile | 19 ++++++++++++++----- R/R-distrEllipse/Portfile | 15 ++++++++------- R/R-distrMod/Portfile | 16 +++++++--------- R/R-distrSim/Portfile | 16 +++++++++------- 9 files changed, 180 insertions(+), 28 deletions(-) create mode 100644 R/R-ROptEst/Portfile create mode 100644 R/R-RobAStBase/Portfile create mode 100644 R/R-RobAStRDA/Portfile create mode 100644 R/R-RobExtremes/Portfile create mode 100644 R/R-RobLox/Portfile diff --git a/R/R-ROptEst/Portfile b/R/R-ROptEst/Portfile new file mode 100644 index 0000000000000..a15bdccd5967a --- /dev/null +++ b/R/R-ROptEst/Portfile @@ -0,0 +1,29 @@ +# -*- coding: utf-8; mode: tcl; 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coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup cran r-project RobAStRDA 1.2.1 +revision 0 +categories-append math +platforms {darwin any} +maintainers nomaintainer +license LGPL-3 +description Interpolation grids for the R-RobASt \ + family of packages +long_description {*}${description} +homepage https://r-forge.r-project.org/projects/robast +checksums rmd160 3d32a64c13003e7e6cf7bb52fc7e6211c374e9fe \ + sha256 bc9827e848e413f10b8efec8e3b6b020570d2759cece619562ace041456fcc94 \ + size 3545051 +supported_archs noarch + +test.run yes diff --git a/R/R-RobExtremes/Portfile b/R/R-RobExtremes/Portfile new file mode 100644 index 0000000000000..6da68c984b3a9 --- /dev/null +++ b/R/R-RobExtremes/Portfile @@ -0,0 +1,34 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup cran r-project RobExtremes 1.3.0 +revision 0 +categories-append math +maintainers {@barracuda156 gmail.com:vital.had} openmaintainer +license LGPL-3 +description Optimally robust estimation for extreme value distributions +long_description {*}${description} +homepage https://r-forge.r-project.org/projects/robast +checksums rmd160 cf8a46692028865ac28b90a24c0ad61013266009 \ + sha256 a46b54edd956d619841e94d7d9e7f88bca9e6ea1bc5f80978cc8439ba757f137 \ + size 135534 + +depends_lib-append port:R-actuar \ + port:R-evd \ + port:R-distr \ + port:R-distrEx \ + port:R-distrMod \ + port:R-RandVar \ + port:R-RobAStBase \ + port:R-RobAStRDA \ + port:R-robustbase \ + port:R-ROptEst \ + port:R-startupmsg + +depends_test-append port:R-fitdistrplus \ + port:R-ismev \ + port:R-RUnit + +test.run yes diff --git a/R/R-RobLox/Portfile b/R/R-RobLox/Portfile new file mode 100644 index 0000000000000..f72984b23454b --- /dev/null +++ b/R/R-RobLox/Portfile @@ -0,0 +1,28 @@ +# -*- coding: 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--- a/R/R-distrMod/Portfile +++ b/R/R-distrMod/Portfile @@ -3,8 +3,8 @@ PortSystem 1.0 PortGroup R 1.0 -R.setup r-forge r-project distrMod 2.9.1 -revision 2 +R.setup r-forge r-project distrMod 2.9.3 +revision 0 platforms {darwin any} categories-append math maintainers nomaintainer @@ -13,14 +13,11 @@ description Implements S4 classes for probability models \ based on packages R-distr and R-distrEx long_description {*}${description} homepage https://distr.r-forge.r-project.org -checksums rmd160 c1c3a2c21261e3e70ce79b3118eea2004737403a \ - sha256 e6fefa907e784bf894e5ea500739a1d9abdfed904c25f2b10555f3fac86da0fc \ - size 780028 +checksums rmd160 df744b717b2fa3bcbae8b04418a7f057de762245 \ + sha256 af82e2ef5333bbe5f11a4a06b8af285783e9c96b0f7828567dfbfaed113b2e66 \ + size 780146 supported_archs noarch -# Remove with the next update: -dist_subdir ${name}/${version}_1 - depends_lib-append port:R-distr \ port:R-distrEx \ port:R-RandVar \ @@ -28,6 +25,7 @@ depends_lib-append port:R-distr \ 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