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Add PLS-DA to Statistical Analysis #25

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XinsongDu opened this issue Mar 30, 2020 · 0 comments
Open

Add PLS-DA to Statistical Analysis #25

XinsongDu opened this issue Mar 30, 2020 · 0 comments
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enhancement New feature or request level_1 difficulty level of resolving this issue is 1 (need to add new code)

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@XinsongDu
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XinsongDu commented Mar 30, 2020

Add PLS-DA (first check online what PLS-DA) to the pipeline. Sample data can be used to test your code. Steps:

  • Google the term and learn about what PLS-DA is.
  • Write code to create PLS-DA for Sample data.
  • Analyze input and output of your code, add argument parser for Python or argument parser for R.
  • Check code qualify using pylint (if using Python) or lintr (if using R) and improve code quality based on checking results.
  • Modify main.nf to integrate your new code to RUMP and test your code.
  • Make a pull request and wait for review.

Using MetaboAnalyst and their sample data to do PLS-DA and observe what the results look like might be helpful.

@XinsongDu XinsongDu added the enhancement New feature or request label Mar 30, 2020
@XinsongDu XinsongDu changed the title PLS-DA Add PLS-DA to Statistical Analysis Mar 30, 2020
@XinsongDu XinsongDu added the level_1 difficulty level of resolving this issue is 1 (need to add new code) label Jun 1, 2020
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enhancement New feature or request level_1 difficulty level of resolving this issue is 1 (need to add new code)
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