Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Record parent attribute invalid #170

Open
svengato opened this issue Aug 16, 2024 · 0 comments
Open

Record parent attribute invalid #170

svengato opened this issue Aug 16, 2024 · 0 comments

Comments

@svengato
Copy link

This error comes up during validation in TrifoliumMine. Similar to #163 which also asks about sorting?

[convertFile] ## Validating tripr collection MilvusB.gnm2.ann1.DFgp
[convertFile]  - tripr.MilvusB.gnm2.ann1.DFgp.gene_models_main.gff3.gz
[convertFile] ## INVALID: tripr.MilvusB.gnm2.ann1.DFgp.gene_models_main.gff3.gz record parent attribute is invalid; does the file need sorting?
[convertFile] ## INVALID: tripr.MilvusB.gnm2.Tp1     ensembl five_prime_UTR  6545    6812    0.0     .       ID=tripr.MilvusB.gnm2.ann1.mRNA2509.utr1;Parent=tripr.MilvusB.gnm2.ann1.mRNA2509;Name=tripr.mRNA2509.utr1
[convertFile] ## INVALID: {Parent=tripr.MilvusB.gnm2.ann1.mRNA2509, ID=tripr.MilvusB.gnm2.ann1.mRNA2509.utr1, Name=tripr.mRNA2509.utr1}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant