diff --git a/Glycine/max/studies/glyma.Cheng_Wang_2013.yml b/Glycine/max/studies/glyma.Cheng_Wang_2013.yml index 4c0b0ff..aa853bb 100644 --- a/Glycine/max/studies/glyma.Cheng_Wang_2013.yml +++ b/Glycine/max/studies/glyma.Cheng_Wang_2013.yml @@ -2,15 +2,16 @@ scientific_name: Glycine max gene_symbols: GmIFS1 gene_symbol_long: Isoflavone Synthase 1 -gene_model_pub_name: IFS1 -gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.07G202300 +gene_model_pub_name: EU391460.1 +gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.07G202300 confidence: 4 curators: - Ella Townsend - Jacqueline Campbell - Scott Kalberer + - Steven Cannon comments: - - GmIFS1 is a duplicate of GmIFS2. ### What is meant by "duplicate" here? + - A cytochrome P450 superfamily protein phenotype_synopsis: Involved in producing soybean isoflavonoids, isoflavonoids involved in health benefits for soybean consumption, and more importantly, involved with soybean environmental stress response. @@ -31,19 +32,24 @@ references: - citation: Cheng, Wang, et al., 2013 doi: 10.1371/journal.pone.0054154 pmid: 23342093 + - citation: Jung, Yu, et al. 2013 + doi: 10.1038/72671 + pmid: 10657130 --- scientific_name: Glycine max gene_symbols: GmIFS2 gene_symbol_long: Isoflavone Synthase 2 -gene_model_pub_name: IFS2 -gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.13G173500 +gene_model_pub_name: EU391493.1 +gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.13G173500 confidence: 4 curators: - Ella Townsend - Jacqueline Campbell - Scott Kalberer + - Steven Cannon comments: - - GmIFS2 is a duplicate of GmISF1. ### What is meant by "duplicate" here? + - A cytochrome P450 superfamily protein + - glyma.Wm82.gnm4.ann1.Glyma.13G173401 is a second equally good match to EU391493, close to the other GmIFS2 gene on chromosome 13 phenotype_synopsis: Involved in producing soybean isoflavonoids, isoflavonoids involved in health benefits for soybean consumption, and more importantly, involved with soybean environmental stress response. @@ -64,19 +70,25 @@ references: - citation: Cheng, Wang, et al., 2013 doi: 10.1371/journal.pone.0054154 pmid: 23342093 + - citation: Jung, Yu, et al. 2013 + doi: 10.1038/72671 + pmid: 10657130 --- scientific_name: Glycine max gene_symbols: GmF3H2 gene_symbol_long: Flavanone 3-Hydroxylase 2 -gene_model_pub_name: F3H2 -gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.02G048400 +gene_model_pub_name: EU391427.1 +gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.02G048600 confidence: 4 curators: - Ella Townsend - Scott Kalberer + - Jacqueline Campbell + - Steven Cannon comments: + - A cytochrome P450 superfamily protein + - glyma.Wm82.gnm4.ann1.Glyma.02G048400 is also a very strong match to EU391427 - GmF3H2 is under more selective pressure than GmIFS1 & GmIFS2. - - Only shows GmF3H name and not GmF3H2. ### Not sure what this means? phenotype_synopsis: Involved in flavone 3-hydroxylase synthase and involved in environmental stress responses. traits: @@ -96,3 +108,6 @@ references: - citation: Cheng, Wang, et al., 2013 doi: 10.1371/journal.pone.0054154 pmid: 23342093 + - citation: Jung, Yu, et al. 2013 + doi: 10.1038/72671 + pmid: 10657130