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Add genome and annotations for Phytozome Glycine max Wm82 gnm6 ann1 #198

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StevenCannon-USDA opened this issue Feb 21, 2024 · 2 comments
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@StevenCannon-USDA
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StevenCannon-USDA commented Feb 21, 2024

Main steps for adding new genome and annotation collections

Genus/species/collection names:

  • Glycine/max/genomes/Wm82.gnm6.S97D

  • Glycine/max/annotations/Wm82.gnm6.ann1.PKSW

  • Add collection(s) to the Data Store, including commits to datastore-metadata

  • Validate the README(s)

  • Update about_this_collection.yml

  • Calculate AHRD functional annotations

  • Calculate gene family assignments (.gfa)

  • Add to pan-gene set

  • Load relevant mine

  • Add BLAST targets

  • Incorporate into GCV

  • Update the jekyll collections listing

  • Update browser configs

  • run BUSCO

  • Update DSCensor

  • Add LINKOUTS to datastore, refresh linkout service

@adf-ncgr
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adf-ncgr commented Mar 4, 2024

@StevenCannon-USDA I've put the AHRD/GFA/BUSCO updates for this one into the annex folders. If you want to give them a quick look before I move them into the data store proper, let me know otherwise I will probably just go ahead with this in a day or two.

@StevenCannon-USDA
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Looks good to me. Thanks for handling this -

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