cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.gff3.gz has 153 genes w/o Note and 13,429 w/o GO terms

[sammyjava]

Right now I'm limiting the number of allowable no-Note genes to 100. Maybe 153 is fine, but there are also a lot of GO terms missing in this GFF (16,993 gene records DO have GO terms, though).

[convertFile] ## Validating cicar collection ICC4958.gnm2.ann1.LCVX
[convertFile] - cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.gff3.gz
[convertFile] ## INVALID: cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.gff3.gz 153 gene records are missing the Note attribute.
[convertFile] x cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.gff3.gz 13428 gene record Note attributes are missing GO terms.

[sammyjava]

(I'll increase the no-Note limit to 250 for now so I can get MiniMine 5.1.0.4 loaded.)

[adf-ncgr]

OK, I just took a somewhat closer look at this; my impression is that we may have not actually run the full AHRD protocol on this one, which probably explains why it is a little peculiar. Looks like we had to do a fair amount of wrangling back in the day to get it to behave at the then-current set of standards. Not sure it is worth revisiting, but I'll keep it on my todo list for the time being.