diff --git a/demo-dep-output.yaml b/demo-dep-output.yaml
index 5281fc1d..64b83b00 100644
--- a/demo-dep-output.yaml
+++ b/demo-dep-output.yaml
@@ -66,11 +66,6 @@
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/modern-go/reflect2
-    version: v1.0.2
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: golang.org/x/net
     version: v0.0.0-20220127200216-cd36cc0744dd
     labels:
@@ -91,11 +86,6 @@
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: golang.org/x/text
-    version: v0.3.7
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: golang.org/x/tools
     version: v0.0.0-20180917221912-90fa682c2a6e
     labels:
@@ -126,11 +116,6 @@
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/gogo/protobuf
-    version: v1.3.2
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: github.com/google/cel-go
     version: v0.10.1
     labels:
@@ -146,11 +131,6 @@
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/google/gofuzz
-    version: v1.1.0
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: github.com/google/uuid
     version: v1.1.2
     labels:
@@ -201,11 +181,6 @@
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: gopkg.in/yaml.v2
-    version: v2.4.0
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: k8s.io/api
     version: v0.24.4
     labels:
@@ -266,21 +241,11 @@
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: k8s.io/apimachinery
-    version: v0.24.4
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: github.com/armon/go-socks5
     version: v0.0.0-20160902184237-e75332964ef5
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/davecgh/go-spew
-    version: v1.1.1
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: github.com/elazarl/goproxy
     version: v0.0.0-20180725130230-947c36da3153
     labels:
@@ -291,41 +256,11 @@
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/gogo/protobuf
-    version: v1.3.2
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: github.com/golang/protobuf
     version: v1.5.2
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/google/gnostic
-    version: v0.5.7-v3refs
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: github.com/google/go-cmp
-    version: v0.5.5
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: github.com/google/gofuzz
-    version: v1.1.0
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: github.com/google/uuid
-    version: v1.1.2
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: github.com/json-iterator/go
-    version: v1.1.12
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: github.com/kr/text
     version: v0.2.0
     labels:
@@ -356,151 +291,41 @@
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/spf13/pflag
-    version: v1.0.5
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: github.com/stretchr/testify
-    version: v1.7.0
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: golang.org/x/net
-    version: v0.0.0-20220127200216-cd36cc0744dd
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: golang.org/x/sys
     version: v0.0.0-20220209214540-3681064d5158
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: google.golang.org/protobuf
-    version: v1.27.1
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: gopkg.in/check.v1
     version: v1.0.0-20200227125254-8fa46927fb4f
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: gopkg.in/inf.v0
-    version: v0.9.1
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: gopkg.in/yaml.v2
-    version: v2.4.0
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: k8s.io/klog/v2
-    version: v2.60.1
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: k8s.io/kube-openapi
-    version: v0.0.0-20220328201542-3ee0da9b0b42
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: k8s.io/utils
-    version: v0.0.0-20220210201930-3a6ce19ff2f9
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: sigs.k8s.io/json
-    version: v0.0.0-20211208200746-9f7c6b3444d2
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: sigs.k8s.io/structured-merge-diff/v4
-    version: v4.2.1
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: sigs.k8s.io/yaml
-    version: v1.2.0
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: k8s.io/klog/v2
-    version: v2.60.1
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: github.com/go-logr/logr
-    version: v1.2.0
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: k8s.io/utils
-    version: v0.0.0-20220210201930-3a6ce19ff2f9
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: github.com/davecgh/go-spew
-    version: v1.1.1
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: github.com/spf13/afero
     version: v1.2.2
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/stretchr/testify
-    version: v1.3.0
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: k8s.io/klog/v2
     version: v2.0.0
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: sigs.k8s.io/json
-    version: v0.0.0-20211208200746-9f7c6b3444d2
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
-  - name: sigs.k8s.io/structured-merge-diff/v4
-    version: v4.2.1
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: gopkg.in/yaml.v2
     version: v2.2.8
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/google/gofuzz
-    version: v1.0.0
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: github.com/json-iterator/go
     version: v1.1.6
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/modern-go/concurrent
-    version: v0.0.0-20180306012644-bacd9c7ef1dd
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
   - name: github.com/modern-go/reflect2
     version: v1.0.1
     labels:
     - konveyor.io/dep-source=downloadable
     - konveyor.io/language=go
-  - name: github.com/stretchr/testify
-    version: v1.3.0
-    labels:
-    - konveyor.io/dep-source=downloadable
-    - konveyor.io/language=go
 - fileURI: file:///analyzer-lsp/examples/customers-tomcat-legacy/pom.xml
   provider: java
   dependencies:
diff --git a/provider/provider.go b/provider/provider.go
index f4f263f1..346a731d 100644
--- a/provider/provider.go
+++ b/provider/provider.go
@@ -244,6 +244,7 @@ func FullDepsResponse(clients []ServiceClient) (map[uri.URI][]*Dep, error) {
 		for k, v := range r {
 			deps[k] = v
 		}
+		deps = deduplicateDependencies(deps)
 	}
 	return deps, nil
 }
@@ -373,6 +374,7 @@ func (p *ProviderCondition) Evaluate(ctx context.Context, log logr.Logger, condC
 		if err != nil {
 			return engine.ConditionResponse{}, err
 		}
+		deps = deduplicateDependencies(deps)
 	}
 
 	incidents := []engine.IncidentContext{}
@@ -620,3 +622,38 @@ func ConvertDagItemsToList(items []DepDAGItem) []*Dep {
 	}
 	return deps
 }
+
+func deduplicateDependencies(dependencies map[uri.URI][]*Dep) map[uri.URI][]*Dep {
+	// Just need this so I can differentiate between dependencies that aren't found
+	// and dependencies that are at index 0
+	intPtr := func(i int) *int {
+		return &i
+	}
+	deduped := map[uri.URI][]*Dep{}
+	for uri, deps := range dependencies {
+		deduped[uri] = []*Dep{}
+		depSeen := map[string]*int{}
+		for _, dep := range deps {
+			id := dep.Name + dep.Version + dep.ResolvedIdentifier
+			if depSeen[id+"direct"] != nil {
+				// We've already seen it and it's direct, nothing to do
+				continue
+			} else if depSeen[id+"indirect"] != nil && !dep.Indirect {
+				// We've seen it as an indirect, need to update the dep in
+				// the list to reflect that it's actually a direct dependency
+				deduped[uri][*depSeen[id+"indirect"]].Indirect = false
+				depSeen[id+"direct"] = depSeen[id+"indirect"]
+			} else {
+				// We haven't seen this before and need to update the dedup
+				// list and mark that we've seen it
+				deduped[uri] = append(deduped[uri], dep)
+				if dep.Indirect {
+					depSeen[id+"indirect"] = intPtr(len(deduped) - 1)
+				} else {
+					depSeen[id+"direct"] = intPtr(len(deduped) - 1)
+				}
+			}
+		}
+	}
+	return deduped
+}
diff --git a/provider/provider_test.go b/provider/provider_test.go
index e943e45f..c02ff56c 100644
--- a/provider/provider_test.go
+++ b/provider/provider_test.go
@@ -2,6 +2,7 @@ package provider
 
 import (
 	"context"
+	"reflect"
 	"testing"
 
 	"github.com/go-logr/logr"
@@ -241,3 +242,96 @@ func Test_matchDepLabelSelector(t *testing.T) {
 		})
 	}
 }
+
+func Test_deduplication(t *testing.T) {
+	tests := []struct {
+		title        string
+		dependencies map[uri.URI][]*Dep
+		expected     map[uri.URI][]*Dep
+	}{
+		{
+			title: "no duplicates within a file should result in an unchanged list",
+			dependencies: map[uri.URI][]*Dep{
+				uri.URI("file1"): []*Dep{
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+					{Name: "dep2", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+				},
+				uri.URI("file2"): []*Dep{
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+					{Name: "dep2", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+				},
+			},
+			expected: map[uri.URI][]*Dep{
+				uri.URI("file1"): []*Dep{
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+					{Name: "dep2", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+				},
+				uri.URI("file2"): []*Dep{
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+					{Name: "dep2", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+				},
+			},
+		},
+		{
+			title: "different versions or shas of the same dependency should not be deduped",
+			dependencies: map[uri.URI][]*Dep{
+				uri.URI("file1"): []*Dep{
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+					{Name: "dep1", Version: "v2.0.0", ResolvedIdentifier: "abcd"},
+					{Name: "dep2", Version: "v1.0.0", ResolvedIdentifier: "abcde"},
+					{Name: "dep2", Version: "v1.0.0", ResolvedIdentifier: "abcdf"},
+				},
+			},
+			expected: map[uri.URI][]*Dep{
+				uri.URI("file1"): []*Dep{
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+					{Name: "dep1", Version: "v2.0.0", ResolvedIdentifier: "abcd"},
+					{Name: "dep2", Version: "v1.0.0", ResolvedIdentifier: "abcde"},
+					{Name: "dep2", Version: "v1.0.0", ResolvedIdentifier: "abcdf"},
+				},
+			},
+		},
+		{
+			title: "duplicates within a file should be removed",
+			dependencies: map[uri.URI][]*Dep{
+				uri.URI("file1"): []*Dep{
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+				},
+			},
+			expected: map[uri.URI][]*Dep{
+				uri.URI("file1"): []*Dep{
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+				},
+			},
+		},
+		{
+			title: "direct dependencies should be preferred over indirect",
+			dependencies: map[uri.URI][]*Dep{
+				uri.URI("file1"): []*Dep{
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd", Indirect: true},
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+				},
+			},
+			expected: map[uri.URI][]*Dep{
+				uri.URI("file1"): []*Dep{
+					{Name: "dep1", Version: "v1.0.0", ResolvedIdentifier: "abcd"},
+				},
+			},
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.title, func(t *testing.T) {
+			deduped := deduplicateDependencies(tt.dependencies)
+			for uri, deps := range tt.expected {
+				for i, dep := range deps {
+					if !reflect.DeepEqual(deduped[uri][i], dep) {
+						t.Errorf("Expected '%+v', got '%+v'", tt.expected, deduped)
+					}
+				}
+			}
+		})
+	}
+
+}