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I am trying to use getmlst.py to perform the step below for Neisseria Gonorrhoeae while following the description in the example on this repo but i get No species matched your query
(ii) a fasta sequence database to match to. For MLST, this means a fasta file of all allele sequences. If you want to assign STs, you also need a tab-delim file which defines the ST profiles as a combination of alleles. You can retrieve these files automatically from pubmlst.org/data/ using the script provided:
I am trying to use getmlst.py to perform the step below for Neisseria Gonorrhoeae while following the description in the example on this repo but i get
No species matched your query
(ii) a fasta sequence database to match to. For MLST, this means a fasta file of all allele sequences. If you want to assign STs, you also need a tab-delim file which defines the ST profiles as a combination of alleles. You can retrieve these files automatically from pubmlst.org/data/ using the script provided:
Command used:
getmlst.py --species "Neisseria Gonorrhoeae"
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